ID:

dps_644

 Coordinate:

2:18326775-18326925 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-22.4 -22.4 -22.3

Flybase annnotation

exon [Dpse\GA27324:9]; CDS [Dpse\GA27324-cds]; intron [Dpse\GA27324-in]

Repeatable elements

NameClassFamilyStrand
(T)nSimple_repeatSimple_repeat+
mature
  1. XL_group1e:4841121-4841138 +
  2. Unknown_singleton_1492:25014-25031 +
  3. 2:6485440-6485457 +
  4. 2:13592165-13592182 +
  5. dps_644  2:18326900-18326917 +
  6. 2:30510433-30510450 +
  7. 2:30591276-30591293 +
  8. XR_group8:5790613-5790630 +
  9. 4_group1:2847400-2847417 +
  10. 4_group4:5053872-5053889 +
  11. 4_group4:5501816-5501833 +
  12. XR_group6:2163933-2163950 +
  13. XR_group6:2656673-2656690 +
  14. XR_group6:5186542-5186559 +
  15. XR_group6:5186658-5186675 +
  16. XR_group6:9772223-9772240 +
  17. XR_group6:11805737-11805754 +
  18. XR_group6:12238176-12238193 +
  19. XL_group1a:6385745-6385762 +
  20. Unknown_group_647:2365-2382 +
  21. XL_group1e:11895508-11895525 +
  22. 4_group5:168684-168701 +
  23. 4_group5:2349116-2349133 +
  24. XL_group3b:242992-243009 +
  25. Unknown_group_343:4625-4642 +
  26. 2:6602763-6602780 +
  27. 2:30079342-30079359 +
  28. XL_group3a:2438343-2438360 +
  29. Unknown_group_389:5976-5993 +
  30. Unknown_group_248:1551-1568 +
  31. XR_group8:2862021-2862038 +
  32. XR_group8:4618838-4618855 +
  33. 4_group1:839548-839565 +
  34. 4_group3:6287057-6287074 +
  35. XR_group6:3832163-3832180 +
  36. XR_group6:10300967-10300984 +
  37. XL_group1a:1123443-1123460 +
  38. XL_group1a:8718552-8718569 +
  39. Unknown_singleton_2400:148-165 +
  40. Unknown_singleton_3251:2176-2193 +
  41. XL_group1e:2308184-2308201 +
  42. XR_group8:2054774-2054791 +
  43. 4_group1:1924030-1924047 +
  44. 4_group3:11151096-11151113 +
  45. XR_group6:11888202-11888219 +
star

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ACCTGGATCAGATCGGTGGATATATTTTTTTCTCCCACGTAAAAATGATAAGCAGACACTAATTTTTCACGTAGGCAGACCAGTGACACAATCGTCGCGAGTTAATCGATTTCTCTGAATATGTTTAATTTGGGTCTTGTAGCTTTATAAAGTCGAAAATATAACAAAAAAACATTTTTTTTTTTTTTTTTTTTTTTTCAGAGCCAGGGTTCTATAAGGATGGGGAATTTGGAATACGCATTGAAGACATT
**************************************************(((((((.((((.((...(((((..((((...(((((......)))))(((((....))))).))))..)))))..)).))))))))....)))..........(((((...((.(((((((........))))))).))....)))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 GSM343916
embryo
 M059
embryo
 M062
head
 SRR902010
ovaries
 SRR902011
testis
 SRR902012
CNS imaginal disc
 V112
male body
...............................................................................................................................................................................TTTTTTTTTTTTTTTTTT.......................................................... 18 0 20 5.40 108 108 0 0 0 0 0 0 0
.............................................................................................................................................................................ATTTTTTTTTTTTTTTTTT........................................................... 19 0 20 2.00 40 40 0 0 0 0 0 0 0
..............................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTT........................................................ 21 0 20 1.60 32 0 0 32 0 0 0 0 0
.................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTT...................................................... 20 0 20 1.15 23 0 0 0 23 0 0 0 0
...................................................................................................................................................................................................................CTATAAGGATGGGGAATTTGGA.................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TAAGGATGGGGAATTTGGA.................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TCTATAAGGATGGGGAATTTGGA.................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................GGGGAATTTGGAATACGC............ 18 0 1 1.00 1 0 0 0 0 0 0 1 0
............................................................................................................................................................................................................................TGGGGAATTTGGAATACGCATTGAAG..... 26 0 1 1.00 1 0 0 0 0 0 1 0 0
.......................................................................................................................................................................AGAAAAATCTTTTTTTTTTTTTTTTTTTTTTC.................................................... 32 3 1 1.00 1 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................GTTCTATAAGGATGGGGA......................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................TTGATGAGCCAGGGTTCTATAAG................................. 23 3 1 1.00 1 0 0 0 0 0 0 0 1
..........................................................................................................................................................................................................................GATGGGGAATTTGGAATACGC............ 21 0 1 1.00 1 1 0 0 0 0 0 0 0
.......TCAGATCGGTGGATATATTT................................................................................................................................................................................................................................ 20 0 1 1.00 1 0 0 0 0 1 0 0 0
..................................................................................................................................................................................................................TCTATAAGGATGGGGAATTTGGAAT................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTTT........................................................ 22 0 20 0.40 8 8 0 0 0 0 0 0 0
...................................................................................................................................................................AAAAAAAAATATTTTTTTTTTTTTTTTTTTTTTTTT.................................................... 36 3 3 0.33 1 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................ATGAGCCAGGGTTCTATAA.................................. 19 2 3 0.33 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................GGAATTTGGAATAAGCGTTGT....... 21 3 3 0.33 1 1 0 0 0 0 0 0 0
...................................................................................................................................................................AAAAAAAAACATTTTTTTTTTGTTTTTATTTT........................................................ 32 3 3 0.33 1 0 1 0 0 0 0 0 0
..................................................................................................................................................................AAAAAAAAAATTTTTTTTTTTTTTTTTTTTTTTTTT..................................................... 36 3 3 0.33 1 0 1 0 0 0 0 0 0
................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTT..................................................... 22 0 20 0.30 6 0 0 0 6 0 0 0 0
..................................................................................................................................................................AAAAAAAATAAATTTTTTTTTTTTTTTTTTTTTTTT..................................................... 36 3 4 0.25 1 0 1 0 0 0 0 0 0
.............................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTTTTT...................................................... 24 0 20 0.20 4 2 0 2 0 0 0 0 0
.............................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTT......................................................... 21 0 20 0.20 4 0 0 0 4 0 0 0 0
...............................................................................................................................................................................................................................GGAATTTGGAATAAGCGTT......... 19 2 6 0.17 1 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................ATTAGGATGGGGAACTTG.................... 18 2 6 0.17 1 1 0 0 0 0 0 0 0
........................................................................................................................................................................AAAACATTTTTTTTTTTTTTCTC............................................................ 23 2 7 0.14 1 0 1 0 0 0 0 0 0
...............................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTT....................................................... 21 0 20 0.10 2 0 0 0 0 2 0 0 0
.............................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTTTTTT..................................................... 25 0 20 0.10 2 1 0 1 0 0 0 0 0
.............................................................................................................................................................................ATTTTTTGTTTTTTTTTTTTTTTTT..................................................... 25 1 20 0.05 1 0 1 0 0 0 0 0 0
.............................................................................................................................................................................ATTTTTTTTTTTTTTTTTTT.......................................................... 20 0 20 0.05 1 0 0 0 0 1 0 0 0
............................................................................................................................................................................CATCTTTTTTTTTTTTTTTTTTT........................................................ 23 1 20 0.05 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................TTTTTTTTTTTTTTTTT........................................................... 17 0 20 0.05 1 0 0 0 0 0 1 0 0
............................................................................................................................................................................CATTTTTTTTTTTTTTTTTTT.......................................................... 21 0 20 0.05 1 0 0 0 1 0 0 0 0
............................................................................................................................................................................CATTTTTTTTTTTTTTTTTT........................................................... 20 0 20 0.05 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTGTTTT..................................................... 25 1 20 0.05 1 0 1 0 0 0 0 0 0

Anti-sense strand reads

TGGACCTAGTCTAGCCACCTATATAAAAAAAGAGGGTGCATTTTTACTATTCGTCTGTGATTAAAAAGTGCATCCGTCTGGTCACTGTGTTAGCAGCGCTCAATTAGCTAAAGAGACTTATACAAATTAAACCCAGAACATCGAAATATTTCAGCTTTTATATTGTTTTTTTGTAAAAAAAAAAAAAAAAAAAAAAAAGTCTCGGTCCCAAGATATTCCTACCCCTTAAACCTTATGCGTAACTTCTGTAA
**************************************************(((((((.((((.((...(((((..((((...(((((......)))))(((((....))))).))))..)))))..)).))))))))....)))..........(((((...((.(((((((........))))))).))....)))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902011
testis
 GSM343916
embryo
 SRR902010
ovaries
 V112
male body		 M059
embryo
 M062
head
 SRR902012
CNS imaginal disc
 GSM444067
head
.................................................................................................................................................................GTTGTTTTTTTGGGAAAAAAAAAAAAAAAAAAA......................................................... 33 3 1 1.00 1 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAGGCTTGGT............................................. 29 2 1 1.00 1 0 1 0 0 0 0 0 0 0
.............................................................................CTGGTCACTGTGTTAGCAGCGCTC...................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................ATCGAAATACTTCAGCTT.............................................................................................. 18 1 2 0.50 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAGT................................................... 24 0 2 0.50 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................CCAAGTTTTTCCAACCCCTTAA...................... 22 3 2 0.50 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAGT................................................... 25 0 2 0.50 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAG.................................................... 25 0 5 0.40 2 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAGGTC.................................................. 27 1 3 0.33 1 0 0 0 0 0 1 0 0 0
................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAGGCT................................................. 26 1 3 0.33 1 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAGAAGTC.................................................. 26 1 3 0.33 1 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAGAAGTC.................................................. 25 1 3 0.33 1 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAGT................................................... 22 0 3 0.33 1 1 0 0 0 0 0 0 0 0
........................AAAAAAAGAGAGTGCAGTTT............................................................................................................................................................................................................... 20 2 3 0.33 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAA..................................................... 21 0 20 0.25 5 0 0 0 0 0 0 5 0 0
.................................................................................................ACTCAATTAGCTAAAGCGACG..................................................................................................................................... 21 3 4 0.25 1 1 0 0 0 0 0 0 0 0
........................AAAAAAAGAGGGTACACTTT............................................................................................................................................................................................................... 20 2 4 0.25 1 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................................GAAAAACAAAAAAAAAAAAAGTCTC................................................ 25 2 4 0.25 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................AAAAAAAAAAAAAAAAAAGTATC................................................ 23 1 4 0.25 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................ATTCCGACCCCTTACACGTTAT............... 22 3 4 0.25 1 0 0 1 0 0 0 0 0 0
........................AAAAAAAGAGGGCGCACTGT............................................................................................................................................................................................................... 20 3 20 0.20 4 4 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TAGGTCCCAAGACATTTCTA.............................. 20 3 6 0.17 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................AAAAAAAAAAAAAAAAACACAAGTCT................................................. 26 2 6 0.17 1 1 0 0 0 0 0 0 0 0
........................AAAAAAAGAGGGCGCACT................................................................................................................................................................................................................. 18 2 12 0.17 2 2 0 0 0 0 0 0 0 0
..............................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAA..................................................... 24 0 20 0.15 3 0 0 0 0 3 0 0 0 0
...............................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAG.................................................... 24 0 7 0.14 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAGAGT................................................... 26 1 7 0.14 1 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAGTAT................................................. 26 1 8 0.13 1 0 1 0 0 0 0 0 0 0
........................AAAAAAAAACGGTGCATTTT............................................................................................................................................................................................................... 20 2 9 0.11 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................TAAAAAAAAAAAAAAAAAAA.......................................................... 20 0 20 0.10 2 2 0 0 0 0 0 0 0 0
......................................................................................................................................................................................AAAAAAAAAAAAAAAAGGCTAGGTT............................................ 25 3 10 0.10 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAGGCTT................................................ 29 2 11 0.09 1 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................AAAAAAAAAGTCTGCGTCCCT......................................... 21 3 11 0.09 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAATGTCTGAG.............................................. 28 3 11 0.09 1 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................AAAAAAAAAAAATGTCTCCG.............................................. 20 2 12 0.08 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAG.................................................... 23 0 12 0.08 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAGTGT................................................. 23 1 14 0.07 1 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAGACT................................................. 25 1 17 0.06 1 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAGCC.................................................. 27 1 19 0.05 1 0 0 0 1 0 0 0 0 0
........................AAAAAAAGAGGGCGCACTG................................................................................................................................................................................................................ 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0
...........................................TTAATCTTCGTCTATGATTA............................................................................................................................................................................................ 20 3 20 0.05 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................AAAAAAAAAAAAAAAAAATAAAAGTT.................................................. 26 2 20 0.05 1 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................AAAAAAAAAAAAAAAAGTCC................................................. 20 1 20 0.05 1 0 0 0 0 0 1 0 0 0
...............................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAATTC.................................................. 26 1 20 0.05 1 0 0 0 0 0 0 0 1 0
............................................................................................................................................................................GTAAAAAAAAAAAAAAAAAAA.......................................................... 21 0 20 0.05 1 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................TAAAAAAAAAAAAAAAAA............................................................ 18 0 20 0.05 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................AAAAAAAAAAAAAAAAAAATAAAAGTT.................................................. 27 2 20 0.05 1 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................TAAAAAAAAAAAAAAAAAAAAAAAA..................................................... 25 0 20 0.05 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................AAAAAAAAAAAAAAGTCGC................................................ 19 1 20 0.05 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................GTAAAAAAAAAAATAAAAAAAA......................................................... 22 1 20 0.05 1 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAGT................................................... 27 1 20 0.05 1 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................AAAAAAATAAAAAAAAAAGAAAGT................................................... 24 2 20 0.05 1 0 0 0 0 0 0 0 0 1
.........................AACGAGGAGGGTGCATTT................................................................................................................................................................................................................ 18 3 20 0.05 1 1 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 2:18326725-18326975 + dps_644 ACCTGGAT------------CAGATCG--GTGGATATATTTTTTT-CTCCCACGTAAAAATGATAAGCAGACACTAATTTTTCACGTA---------------------------------------------------------------------GGCAGACCAGTGACACAATCG-TCGCGAGTTAATCGATTTCTCTGAATA---TG----------------------------------------------------------------------------------------------------TTTAATTT---------GG-------------------------------------------------------------------------------------------GTCTTGTAGCTTTATAAAGT-----------------CGAAAAT-------------A-TAACA--AAAAAACA-------TTTTT--TTTTTTT---TTTTTTTTTTTTC----AGAGCCAGGGT-TC-----------TA-----------TAAGGATGG--GGAATTTGGAATACGCATTGAAGACATT
droPer2 scaffold_3:699252-699500 + dpe_1349 ACCTGGAT------------CAGATCG--GTGGATATATTTTTTT-CTCCCACGTAAAAATGATAAGCAGACACTAATTTTTCACGTA---------------------------------------------------------------------GGCAGACCAGTGAGACAATCG-TCGCGAGTTAATCGATTTCTCTGAATA---TG----------------------------------------------------------------------------------------------------TTTAATTT---------GG-------------------------------------------------------------------------------------------GTCTTGTAGCTTTATAAAGT-----------------CGAAAAT-------------A-TAACA--AAAAAACA-------TTTTT--TTTTTTT---TTTTTTTTTT--C----AGAGCCAGGGT-TC-----------TA-----------TAAGGATGG--GGAATTTGGAATACGCATTGAAGACATT
droWil2 scf2_1100000004967:3607353-3607553 - ATTTGATT------------GAAATCG--------------------------------------------CACTA------------GACACATGCAAAATATACGTATGAACGTATTTTGCTACACGCTCC--------------------------------------------------------------------------------------------------------------------------------------------ATAAGGGCAGA---------------------------ATAGAATA--------TGAGGCATAT-TAAAAC-------------------------------------------A-----------ATTTAATATACATTTAATATACATTTGG---TTTTAGAAATTTGAAATAGTTGTTTCACC------------TGATAT-A-CAAAA--AAA-AAAA-------TTTGT--TTTTTTT---TTCGTTTTTT--C--------------------------------------------------------------------------------C
droVir3 scaffold_12970:3474756-3474882 + TGATTATTTATGA------------------------------------------------------------------------------------------------------------------------------------------------GACAAACGAGCGAGACGACTGGCCCCCAGCCAGGCAATTCAGTTGGCCA---AA----------------------------------------------------------------------------------------------------GTTTGTTT---------AGGCCGTATTTAAGAC-------------------------------------------A------------------------------------------------------------------------------------------A-TGCCA--AGAAAATA-------TTTTT--TTTCTTT---TGTTTTATAT--T--------------------------------------------------------------------------------T
droMoj3 scaffold_6540:12652914-12653087 - AAAATAAT--------------------------------------------------------AAACAGACACAAATG---------AAAACATATCAAATATGCAAACAAACGAAAAATAGTAAAAAGTCA--------------------------------------------------------------------------------------------------------------------------------------------CAAATAGCTAATTGTTA--------AAGA----GATTT---------------------------------TAAAAACTAGCAACT-----------------------------------------------------------------------------------------------------------------------G-TTTCA--AATAAA-A-------TTTTT--TTTTTTT---TTTT---TTT--TCA--ATAA-----TT-TA-----------T----------------TTTA-------TTTGAAAC----TTTGA---AGCT
droGri2 scaffold_235:3058-3202 - TAAATATA------------------------------TTTTTT----------------------------AT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCGATTTTGCTATGT-----------------CGAAAATTAAAGTTAACCAACGTAATT--ATGAAA-------TTTTTTT----TTTTT---TTTTTTGTAT--TT---------AAGATTTTTCTCTTTCGAC-T-----------GAGGGATAGTCGAAATTTAGAAT----TTTAAAAATATT
droAna3 scaffold_13228:189509-189619 + CACTAACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACCG-TCGCAAGCAACTCCTTTTTTTTGAATA---TA----------------------------------------------------------------------------------------------------TATACGTT---ATATA---------------------------------------TATTGTTTATATATGTTATGTG----------------------------------------------------T-----------------CACTG-----------------------------TCA-------CTATT--TTTTGTT---GCTTTTTTAT--T--------------------------------------------------------------------------------T
droBip1 scf7180000391645:52969-53058 + TTGCGAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAGCACGG---------------------------------------------------------------------------------AAATTGTTTGATTC-----------------------T---------AA-------------------------------------------------------------------------------------------TTCTTGGACCTTTGCCAAAT-----------------C---------------------TAGTT--GG----TA-------TTTTTTTTTTTTTT---TTTTTTTTTT--T--------------------------------------------------------------------------------A
droKik1 scf7180000300150:21328-21480 + TAAAAAAA------------------------------------------------------ATTAGT---TATAA----------------------------------------------------------------ACAATATTTTACAAAATGGCGGACCTATGGAACATATG---------------------------------CCGCAGCGCCTCGAGCTT-------TAAGTTGCCCTGCTATG----------------------------------------------------------GACACGAT---------GG-------------------------------------------------------------------------------------------AGCTCGTAATTT----GTGT-----------------CGGAAAT-------------C-CGCCA--ACAAAA-A------TTTTTT---------------TTTTTTT--T--------------------------------------------------------------------------------T
droFic1 scf7180000453973:144598-144714 + GGGTTTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------G--------------------AATTGTCTGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTACAATAGAT-----------------------------------------A--------------GGGT-A-CAAAAAAAAAAAACA-------ATTTT--TTCATTTT--TATTTTCTG-----------------TT-TA-----------TA-----------TGAAAATGA--CAATAATAAAATACGAGCTTAAAAAAAC
droEle1 scf7180000490970:529550-529646 - ACAATTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAAAT-------------T-TGATT--ATAAAA-------TTTTGTT--TCTTTTT---TTTTTGGTTTTTT----AGAG-----T--TC------------T-----------TTACAGTCC--GAAACCTGAAATAGAAATGAAATATA-T
droRho1 scf7180000779739:46319-46532 + GGCCTGTA------------------------AATGTAATCCCTT-CTCTCACACAAAA---------------CAAAGTTTCAAGTA-----------------------GTCGCCAAGAGGAAAAGAATCGCTAATAAACTATATTAGCGAACAACGTAAA----------------------------------------------------------------------------------------------------------------------------------------------------TTTATATT---ATAGA-------------------------------------------------------------------------------------------------------CTTTATTTATT-----------------CAA-----------------A-TTACA--AAAAAT---------TTGGT--TGTCTTT---TATTTT--GT--T----AAATTAAGGGT-ACTCCCAGTTGTATATAATAA--------GGCTA-------GTGAAAGC----CGTTT---TATT
droBia1 scf7180000301698:22316-22476 + CACCAATTTTC----------------------------------------------------------------------------------------------CGATCGTTCCTATGACAGCTA---------------------------------------AATGTTATAGTCG-T----------CCGATTT---TGATAA---AA----------------------------------------------------------------------------------------------------TTTAATTCGAAATTTA---------------------------------------AAACCAATTAATATGTTAAAAA------------------------------------------------------------------------------------------A-CACCA--AAGATATA-------ATTTT--TTTTTTT---AATTTTTTCC--CCG--AGAG-----TT-TC-----------TA--TGGGAGCTATAA-----------------------------------G
droTak1 scf7180000415778:153617-153803 - AGAAATTTTTTAA------------------------------------------------------------------------------------------------------------------------------------------------ATCGGACCATTCGTTAAAAAG---------------------------------TTACGGCGGATCAAAGTT-------TTTCTCCATCTCCTTCGCACTCCCTTTAGCTGAGTAACGGGTATCTGATAGTCG--------GGGCACCCGACTA---------------------------------TA-GCGTTCTCTCTTGTTTTTT----------------------------------------------------------------ATTAAT----------------------T---------------------TATTT--ATTAAT-------TTTTTTT----TTATT---TTTTTTTTAT--TT-TTAG--------------------------------------------------------------------------A
droEug1 scf7180000409548:705550-705680 - AGCCGATT------------G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGCTCTGTAAAATATTTTTAAGTGCCTCACAATTAGTCAGGTCTATTTGT-------------------------------------CATA-------------------------AAGTATGA---------AAAC--------------------------------------------------------A--ACCAAAAGCCAT---------------------------------------------------------------------------------A--AGAAATCATTATATTTTGTT----TTTTTTTTTTTGG---------------------AT-TC-----------TA-------------------------------------------------T
dm3 chr3R:13120787-13120898 - GCCGA--------------------------------------------------------------------------------------------------------------------------------------------------------------CCAATGAAGTAGTCA-GAGGGAACGGGTTAAGATCGC---------------------------------------------------------------------------------AGTTTATTTAATCG------G----GATTT---------------------------------TA--------------------AGATTTTC----------------------------------------------------------TTATAAATT-----------------CAGTG-----------------------------ACT-------TTTTT--TTTTTTT---TTTTTTTTTT--T--------------------------------------------------------------------------------A
droSim2 3l:22597138-22597351 - ACAGATC--------------AGTTCTATGTGCATATAATTCATTATTTTCATAAAACCATAATGAGAAGGCACTACTT--TCATTTG---------------------------------------------------------------------TGCA-CTTAATG-------CA-TCGCTCAGAAATAAATTTTTTTATACA---CA----------------------------------------------------------------------------------------------------TTTGTTTT---------TTATTATTTTTAAAAC-------------------------------------------CATTTTCGAAAACTTTAATGTGTATTTTGC---------AAATTTTTCTCACGT-----------------CGCAA-----------------------------G-C-------TTTTT--TTTTTTT---TTTTTTTTTT--T--------------------------------------------------------------------------------T
droSec2 scaffold_40:19551-19638 + CGAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAATCGACTT---------------------------------------------------------------------------------------------------------------------------------------------------TA-GAATTTTTTCTTGTTTTGG----------------------------------------------------------------CTTAAA----------------------T------------TGATCAAA-GAAAT--AAAAATCA-------TTGTT--TTTTTTT---TTTTTTTTTT--T--------------------------------------------------------------------------------T
droYak3 3R:579651-579743 + TTATTTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCTCTGAAAA---TGCTAATATGATACATATTTAATAAAATAAATTAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------------T-TAAAG--AAAAAAAA-------TTT----TTATTTT---TTTTTATTTT--T--------------------------------------------------------------------------------T
droEre2 scaffold_4512:285361-285528 + TAACATTTTATGTGATAGACCAGT-CAAAAAGCTTTCGGGTCGTTGATTTCA----------------------------------------------------------------------------AATTGATTACTAATTATATTAACAGAAAAAGCATC----------------------------------------------------------TAAGCC-----------------------------------TTGTTGAGTAGTGCATTTTTTATAAATG-----CAAAAGCAGAGAAGCA---------------------------------TA-A---------------------------------------------------------------------------------------------------------------ACTT-----------------------------TCC-------ATA----CTTTTTT---TTTTTTTTTT--A--------------------------------------------------------------------------------G

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
ACCTGGAT------------CAGATCG--GTGGATATATTTTTTT-CTCCCACGTAAAAATGATAAGCAGACACTAATTTTTCACGTA---------------------------------------------------------------------GGCAGACCAGTGACACAATCG-TCGCGAGTTAATCGATTTCTCTGAATA---TG----------------------------------------------------------------------------------------------------TTTAATTT---------GG-------------------------------------------------------------------------------------------GTCTTGTAGCTTTATAAAGT-----------------CGAAAAT-------------A-TAACA--AAAAAACA-------TTTTT--TTTTTTT---TTTTTTTTTTTTC----AGAGCCAGGGT-TC-----------TA-----------TAAGGATGG--GGAATTTGGAATACGCATTGAAGACATTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTT--TTTTTTT---TTTTTTT.......................................................................................18205.40108010800000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------TTTTT--TTTTTTT---TTTTTT........................................................................................19202.004004000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTT--TTTTTTT---TTTTTTTTT.....................................................................................21201.603200320000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT--TTTTTTT---TTTTTTTTTTT...................................................................................20201.152300023000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-----------TA-----------TAAGGATGG--GGAATTTGGA..................2211.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGGATGG--GGAATTTGGA..................1911.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC-----------TA-----------TAAGGATGG--GGAATTTGGA..................2311.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GG--GGAATTTGGAATACGC............1811.0010000000001
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGG--GGAATTTGGAATACGCATTGAAG.....2611.0010000000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT-TC-----------TA-----------TAAGGATGG--GGA.........................1811.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGG--GGAATTTGGAATACGC............2111.0010100000000
.......T------------CAGATCG--GTGGATATATTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC-----------TA-----------TAAGGATGG--GGAATTTGGAAT................2511.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------TTTTT--TTTTTTT---TTTTTTTTT.....................................................................................22200.4080800000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT--TTTTTTT---TTTTTTTTTTTT..................................................................................22200.3060006000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------TTTTT--TTTTTTT---TTTTTTTTTTT...................................................................................24200.2040220000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------TTTTT--TTTTTTT---TTTTTTTT......................................................................................21200.2040004000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTT--TTTTTTT---TTTTTTTTTT....................................................................................21200.1020000000200
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------TTTTT--TTTTTTT---TTTTTTTTTTTT..................................................................................25200.1020110000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------TTTTT--TTTTTTT---TTTTTTT.......................................................................................20200.0510000000100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTT--TTTTTTT---TTTTTT........................................................................................17200.0510000000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-------TTTTT--TTTTTTT---TTTTTTT.......................................................................................21200.0510001000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-------TTTTT--TTTTTTT---TTTTTT........................................................................................20200.0510100000000
droPer2
ACCTGGAT------------CAGATCG--GTGGATATATTTTTTT-CTCCCACGTAAAAATGATAAGCAGACACTAATTTTTCACGTA---------------------------------------------------------------------GGCAGACCAGTGAGACAATCG-TCGCGAGTTAATCGATTTCTCTGAATA---TG----------------------------------------------------------------------------------------------------TTTAATTT---------GG-------------------------------------------------------------------------------------------GTCTTGTAGCTTTATAAAGT-----------------CGAAAAT-------------A-TAACA--AAAAAACA-------TTTTT--TTTTTTT---TTTTTTTTTT--C----AGAGCCAGGGT-TC-----------TA-----------TAAGGATGG--GGAATTTGGAATACGCATTGAAGACATTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...............................................................................................................................................................CAGACCAGTGAGACAATCG-TCGCGAGTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................2812.002200000
...........................................................................................................................................................................................TAATCGATTTCTCTGAAT........................................................................................................................................................................................................................................................................................................................................................................................................................1812.002200000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----------TAAGGATGG--GGAATTTGG...................1911.001000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT-TC-----------TA-----------TAAGGATGG--GGAATTTGGA..................2511.001000001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-----------TA-----------TAAGGATGG--GGAATTTGGAA.................2311.001000001
droWil2
ATTTGATT------------GAAATCG--------------------------------------------CACTA------------GACACATGCAAAATATACGTATGAACGTATTTTGCTACACGCTCC--------------------------------------------------------------------------------------------------------------------------------------------ATAAGGGCAGA---------------------------ATAGAATA--------TGAGGCATAT-TAAAAC-------------------------------------------A-----------ATTTAATATACATTTAATATACATTTGG---TTTTAGAAATTTGAAATAGTTGTTTCACC------------TGATAT-A-CAAAA--AAA-AAAA-------TTTGT--TTTTTTT---TTCGTTTTTT--C--------------------------------------------------------------------------------CSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
TGATTATTTATGA------------------------------------------------------------------------------------------------------------------------------------------------GACAAACGAGCGAGACGACTGGCCCCCAGCCAGGCAATTCAGTTGGCCA---AA----------------------------------------------------------------------------------------------------GTTTGTTT---------AGGCCGTATTTAAGAC-------------------------------------------A------------------------------------------------------------------------------------------A-TGCCA--AGAAAATA-------TTTTT--TTTCTTT---TGTTTTATAT--T--------------------------------------------------------------------------------TSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
AAAATAAT--------------------------------------------------------AAACAGACACAAATG---------AAAACATATCAAATATGCAAACAAACGAAAAATAGTAAAAAGTCA--------------------------------------------------------------------------------------------------------------------------------------------CAAATAGCTAATTGTTA--------AAGA----GATTT---------------------------------TAAAAACTAGCAACT-----------------------------------------------------------------------------------------------------------------------G-TTTCA--AATAAA-A-------TTTTT--TTTTTTT---TTTT---TTT--TCA--ATAA-----TT-TA-----------T----------------TTTA-------TTTGAAAC----TTTGA---AGCTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
TAAATATA------------------------------TTTTTT----------------------------AT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCGATTTTGCTATGT-----------------CGAAAATTAAAGTTAACCAACGTAATT--ATGAAA-------TTTTTTT----TTTTT---TTTTTTGTAT--TT---------AAGATTTTTCTCTTTCGAC-T-----------GAGGGATAGTCGAAATTTAGAAT----TTTAAAAATATTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
CACTAACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACCG-TCGCAAGCAACTCCTTTTTTTTGAATA---TA----------------------------------------------------------------------------------------------------TATACGTT---ATATA---------------------------------------TATTGTTTATATATGTTATGTG----------------------------------------------------T-----------------CACTG-----------------------------TCA-------CTATT--TTTTGTT---GCTTTTTTAT--T--------------------------------------------------------------------------------TSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....ACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACCG-TCGCAAGCAACTCCTTT.................................................................................................................................................................................................................................................................................................................................................................................................................................2621.002020000
.....ACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACCG-TCGCAAGCAACTCCTTTT................................................................................................................................................................................................................................................................................................................................................................................................................................2721.002110000
...TAACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACCG-TCGCAAGCAACTCCTT..................................................................................................................................................................................................................................................................................................................................................................................................................................2720.501100000
............................................................................................................................................................................CAACCG-TCGCAAGCAACTCCTTTTT...............................................................................................................................................................................................................................................................................................................................................................................................................................2520.501100000
......CA--------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACCG-TCGCAAGCAACTCCTTT.................................................................................................................................................................................................................................................................................................................................................................................................................................2520.501100000
...................................................................................................................................................................................................................................................................................................................................................................................TTTATATATGTTATGTG----------------------------------------------------T-----------------CACTG-----------------------------TCA-------CT.............................................................................................................28200.051010000
................................................................................................................................................................................................................................................................................................................................................................................................TGTG----------------------------------------------------T-----------------CACTG-----------------------------TCA-------CTATT--TTTTGC..................................................................................................24200.051010000
droBip1
TTGCGAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAGCACGG---------------------------------------------------------------------------------AAATTGTTTGATTC-----------------------T---------AA-------------------------------------------------------------------------------------------TTCTTGGACCTTTGCCAAAT-----------------C---------------------TAGTT--GG----TA-------TTTTTTTTTTTTTT---TTTTTTTTTT--T--------------------------------------------------------------------------------ASizeHit CountTotal NormTotal
No Reads
droKik1
TAAAAAAA------------------------------------------------------ATTAGT---TATAA----------------------------------------------------------------ACAATATTTTACAAAATGGCGGACCTATGGAACATATG---------------------------------CCGCAGCGCCTCGAGCTT-------TAAGTTGCCCTGCTATG----------------------------------------------------------GACACGAT---------GG-------------------------------------------------------------------------------------------AGCTCGTAATTT----GTGT-----------------CGGAAAT-------------C-CGCCA--ACAAAA-A------TTTTTT---------------TTTTTTT--T--------------------------------------------------------------------------------TSizeHit CountTotal NormTotal
No Reads
droFic1
GGGTTTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------G--------------------AATTGTCTGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTACAATAGAT-----------------------------------------A--------------GGGT-A-CAAAAAAAAAAAACA-------ATTTT--TTCATTTT--TATTTTCTG-----------------TT-TA-----------TA-----------TGAAAATGA--CAATAATAAAATACGAGCTTAAAAAAACSizeHit CountTotal NormTotal
No Reads
droEle1
ACAATTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAAAT-------------T-TGATT--ATAAAA-------TTTTGTT--TCTTTTT---TTTTTGGTTTTTT----AGAG-----T--TC------------T-----------TTACAGTCC--GAAACCTGAAATAGAAATGAAATATA-TSizeHit CountTotal NormTotal
No Reads
droRho1
GGCCTGTA------------------------AATGTAATCCCTT-CTCTCACACAAAA---------------CAAAGTTTCAAGTA-----------------------GTCGCCAAGAGGAAAAGAATCGCTAATAAACTATATTAGCGAACAACGTAAA----------------------------------------------------------------------------------------------------------------------------------------------------TTTATATT---ATAGA-------------------------------------------------------------------------------------------------------CTTTATTTATT-----------------CAA-----------------A-TTACA--AAAAAT---------TTGGT--TGTCTTT---TATTTT--GT--T----AAATTAAGGGT-ACTCCCAGTTGTATATAATAA--------GGCTA-------GTGAAAGC----CGTTT---TATTSizeHit CountTotal NormTotal
No Reads
droBia1
CACCAATTTTC----------------------------------------------------------------------------------------------CGATCGTTCCTATGACAGCTA---------------------------------------AATGTTATAGTCG-T----------CCGATTT---TGATAA---AA----------------------------------------------------------------------------------------------------TTTAATTCGAAATTTA---------------------------------------AAACCAATTAATATGTTAAAAA------------------------------------------------------------------------------------------A-CACCA--AAGATATA-------ATTTT--TTTTTTT---AATTTTTTCC--CCG--AGAG-----TT-TC-----------TA--TGGGAGCTATAA-----------------------------------GSizeHit CountTotal NormTotal
No Reads
droTak1
AGAAATTTTTTAA------------------------------------------------------------------------------------------------------------------------------------------------ATCGGACCATTCGTTAAAAAG---------------------------------TTACGGCGGATCAAAGTT-------TTTCTCCATCTCCTTCGCACTCCCTTTAGCTGAGTAACGGGTATCTGATAGTCG--------GGGCACCCGACTA---------------------------------TA-GCGTTCTCTCTTGTTTTTT----------------------------------------------------------------ATTAAT----------------------T---------------------TATTT--ATTAAT-------TTTTTTT----TTATT---TTTTTTTTAT--TT-TTAG--------------------------------------------------------------------------ASizeHit CountTotal NormTotal
No Reads
droEug1
AGCCGATT------------G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGCTCTGTAAAATATTTTTAAGTGCCTCACAATTAGTCAGGTCTATTTGT-------------------------------------CATA-------------------------AAGTATGA---------AAAC--------------------------------------------------------A--ACCAAAAGCCAT---------------------------------------------------------------------------------A--AGAAATCATTATATTTTGTT----TTTTTTTTTTTGG---------------------AT-TC-----------TA-------------------------------------------------TSizeHit CountTotal NormTotal
No Reads
dm3
GCCGA--------------------------------------------------------------------------------------------------------------------------------------------------------------CCAATGAAGTAGTCA-GAGGGAACGGGTTAAGATCGC---------------------------------------------------------------------------------AGTTTATTTAATCG------G----GATTT---------------------------------TA--------------------AGATTTTC----------------------------------------------------------TTATAAATT-----------------CAGTG-----------------------------ACT-------TTTTT--TTTTTTT---TTTTTTTTTT--T--------------------------------------------------------------------------------ASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....A--------------------------------------------------------------------------------------------------------------------------------------------------------------CCAATGAAGTAGTCA-GAGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................2218.0080000000000000000000000000000000000000000000000000000000000530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....A--------------------------------------------------------------------------------------------------------------------------------------------------------------CCAATGAAGTAGTCA-GAGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000004010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....A--------------------------------------------------------------------------------------------------------------------------------------------------------------CCAATGAAGTAGTCA-GAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................1914.0040000000000000000000000000000000000000000000000000000000002200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....A--------------------------------------------------------------------------------------------------------------------------------------------------------------CCAATGAAGTAGTCA-GAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-----------------------------ACT-------TTTTT--TTTTTTT---TTTTTTTT......................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT-------TTTTT--TTTTTTT---TTTTTTT.......................................................................................21200.55110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000290000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------TTTTT--TTTTTTT---TTTTTTTTTT--..................................................................................23200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT-------TTTTT--TTTTTTT---TTTTTTTT......................................................................................22200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACT-------TTTTT--TTTTTTT---TTTTTTTTT.....................................................................................24200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACT-------TTTTT--TTTTTTT---TTTTTTTTTT--T--------------------------------------------------------------------------------.26200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACT-------TTTTT--TTTTTTT---TTTTTT........................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT--TTTTTTT---TTTTTTTTTT--..................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTT--TTTTTTT---TTTTTTTTTT--T--------------------------------------------------------------------------------A24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACT-------TTTTT--TTTTTTT---TTTTTTTT......................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT-------TTTTT--TTTTTTT---TTTTTTTTTT--T--------------------------------------------------------------------------------.25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--TTTTTTT---TTTTTTTTTT--T--------------------------------------------------------------------------------A20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
ACAGATC--------------AGTTCTATGTGCATATAATTCATTATTTTCATAAAACCATAATGAGAAGGCACTACTT--TCATTTG---------------------------------------------------------------------TGCA-CTTAATG-------CA-TCGCTCAGAAATAAATTTTTTTATACA---CA----------------------------------------------------------------------------------------------------TTTGTTTT---------TTATTATTTTTAAAAC-------------------------------------------CATTTTCGAAAACTTTAATGTGTATTTTGC---------AAATTTTTCTCACGT-----------------CGCAA-----------------------------G-C-------TTTTT--TTTTTTT---TTTTTTTTTT--T--------------------------------------------------------------------------------TSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................AACCATAATGAGAAGGCACTACTT--....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................241435.144920000208030132514601177000
.......................................................AACCATAATGAGAAGGCACTACTT--T...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................251430.1442201005202814112184019111000
.......................................................AACCATAATGAGAAGGCACTACTT--TC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................261321.1527500011691310906150349000
.......................................................AACCATAATGAGAAGGCACTACTT--TCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................271310.311340001130142533340239000
.......................................................AACCATAATGAGAAGGCACTACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23168.381340000160921101553019000
.......................................................................CACTACTT--TCATTTG---------------------------------------------------------------------TGCA-C..................................................................................................................................................................................................................................................................................................................................................................................................................................................................20208.051610000161000000000000
.......................................................AACCATAATGAGAAGGCACTAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22177.8813400001120000112018000
.......................................................AACCATAATGAGAAGGCACTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21175.18880000340010020051000
.......................................................................CACTACTT--TCATTTG---------------------------------------------------------------------TGCA-CT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................21204.6593000092010000000000
....................................................TAAAACCATAATGAGAAGGCACTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24173.8866000000000000561000
.......................................................AACCATAATGAGAAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................17173.7163000000000063000000
.......................................................AACCATAATGAGAAGGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18173.35570000340230117000000
.......................................................AACCATAATGAGAAGGCACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20173.18540000000133320015000
.......................................................................CACTACTT--TCATTTG---------------------------------------------------------------------TGCA-CTTAAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................25202.9058000057100000000000
.......................................................................CACTACTT--TCATTTG---------------------------------------------------------------------TGCA-CTTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................23202.3547000146000000000000
.......................................................AACCATAATGAGAAGGCAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19172.1837000034000003000000
.......................................TTCATTATTTTCATAAAACCATAATGAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29132.15280000004112100001000
............................................TATTTTCATAAAACCATA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18161.88300000151500000000000
...............................................................TGAGAAGGCACTACTT--TCATTTG---------------------------------------------------------------------T.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................24101.4014000000000113000000
..............................................................ATGAGAAGGCACTACTT--T...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18141.2918000000000018000000
.......................................................AACCATAATGAGAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................16191.2624000000221118000000
...........................................................ATAATGAGAAGGCACTACTT--T...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21141.0014000000000014000000
...........................................................................ACTT--TCATTTG---------------------------------------------------------------------TGCA-CTTAATG-------CA-..................................................................................................................................................................................................................................................................................................................................................................................................................................................24190.9518000018000000000000
................................................TTCATAAAACCATAATGAGAAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24160.9415000015000000000000
............................................TATTTTCATAAAACCATAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21160.9415000015000000000000
.................................................TCATAAAACCATAATGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18160.9415000015000000000000
............................................................TAATGAGAAGGCACTACTT--TCATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24120.921100000000102017000
....................................................TAAAACCATAATGAGAAGGCACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23170.8815000000000000015000
............................................TATTTTCATAAAACCATAATGAGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26160.8814000001400000000000
...........................................................ATAATGAGAAGGCACTACTT--....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20140.8612000000000012000000
......................................................AAACCATAATGAGAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................17180.8315000000000015000000
.....................................................................................................................................................................................................TTTTATACA---CA----------------------------------------------------------------------------------------------------TTTGTTTT---------TTATTATT.....................................................................................................................................................................................................................................................................................27200.801600000006200008000
............................................................TAATGAGAAGGCACTACTT--TCATTTG---------------------------------------------------------------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................26120.75900000000002007000
...............................................................TGAGAAGGCACTACTT--TCATTTG---------------------------------------------------------------------TG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................25100.60600000000005001000
............................................................TAATGAGAAGGCACTACTT--....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19140.57800000000008000000
...............................................................TGAGAAGGCACTACTT--TCATTTG---------------------------------------------------------------------TGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2690.56500000000011300000
........................................TCATTATTTTCATAAAACCATAATGAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28130.54700000000430000000
............................................................TAATGAGAAGGCACTACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18170.53900000000009000000
............................................................TAATGAGAAGGCACTACTT--TCATTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25120.42500000000000005000
.......................................................AACCATAATGAGAAGGCACTACTT--TCAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28130.38500000010010003000
.................................................TCATAAAACCATAATGAGAAGGCACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26160.38600000004020000000
.......................................................AACCATAATGAGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15190.37700000000007000000
................................................................GAGAAGGCACTACTT--T...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................16140.36500000000005000000
....................................................TAAAACCATAATGAGAAGGCACTACTT--....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27140.36500000001000004000
.......................................................AACCATAATGAGAAGGCACTACTT--TA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26140.36500000010000004000
....................................................TAAAACCATAATGAGAAGGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21170.35600000000000006000
...........................................................ATAATGAGAAGGCACTACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19170.35600000000006000000
....................................................TAAAACCATAATGAGAAGGCAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22170.35600000000000006000
............................................................................................................................................................................................................................................................................................................................................................................................................................TTTGC---------AAATTTTTCTCACGT-----------------CGCAA-----------------------------G-C-------...............................................................................................................2760.33200000000200000000
............................................................................................................................................................................................................................................................................................................................................TATTTTTAAAAC-------------------------------------------CATTTTCGAAAACTT...................................................................................................................................................................................................................2730.33100010000000000000
....................................................................................................................................................................TAATG-------CA-TCGCTCAGAAATAAATTT................................................................................................................................................................................................................................................................................................................................................................................................................................2530.33100000010000000000
....................................................................................................................................................................TAATG-------CA-TCGCTCAGAAATAAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................2330.33100000010000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................AATGTGTATTTTGC---------AAATTTTTCTCA...............................................................................................................................................................................2660.33200000000200000000
................................................................................................................................................................................................................................................................................................................................................TTTAAAAC-------------------------------------------CATTTTCGAAAACTTTAA................................................................................................................................................................................................................2630.33100000000100000000
................................................TTCATAAAACCATAATGAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20160.31500000000022100000
................................................TTCATAAAACCATAATGAGAAGGCAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26160.31500000000000023000
...........................................................ATAATGAGAAGGCACTACTT--TCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23130.31400000000004000000
...................................................................AAGGCACTACTT--TCATTTG---------------------------------------------------------------------T.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................20100.30300000000003000000
.............................................................AATGAGAAGGCACTACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................17170.29500000000005000000
.............................................................AATGAGAAGGCACTACTT--T...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19140.29400000000004000000
..............................................................ATGAGAAGGCACTACTT--....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................17140.29400000000004000000
.......................................................AACCATAATGAGAAGGCACTACTT--TCATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29120.25300000021000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTCTCACGT-----------------CGCAA-----------------------------G-C-------T..............................................................................................................19200.25500000000005000000
......................................................AAACCATAATGAGAAGGCACTACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24160.25400000010002001000
.......................................................................CACTACTT--TCATTTG---------------------------------------------------------------------TGCA-CTTAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.25500030000002000000
.....................................................................................................................................................................................................TTTTATACA---CA----------------------------------------------------------------------------------------------------TTTGTTTT---------TTATTA.......................................................................................................................................................................................................................................................................................25200.25500000023000000000
.......................................................AACCATAATGAGAAGGCACTAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22170.24400000000000004000
.................................................................AGAAGGCACTACTT--TCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................17130.23300000000003000000
.......................................TTCATTATTTTCATAAAACCATAATGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27130.23300000000010011000
....................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCGAAAACTTTAATGTGTATT........................................................................................................................................................................................................2590.22200000000200000000
...............................................................TGAGAAGGCACTACTT--T...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................17140.21300000000003000000
.............................................................AATGAGAAGGCACTACTT--....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18140.21300000000003000000
....................................................TAAAACCATAATGAGAAGGCACTACTT--T...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28140.21300000000000003000
......................................................................................................................................................................................................................................................................................................................................................................................................TTTCGAAAACTTTAATGTGTATTT.......................................................................................................................................................................................................24100.20200000000200000000
.......................................................AACCATAATGAGAAGGCACTACTA--....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24160.19300000000001002000
................................................TTCATAAAACCATAATGAGAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23160.19300000000102000000
.......................................................AACCATAATGAGAAGGCACTAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22170.18300000000000003000
..............................................................ATGAGAAGGCACTACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................16170.18300000000003000000
...............................................................TGAGAAGGCACTACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15180.17300000000003000000
...............................................................TGAGAAGGCACTACTT--TCATTTG---------------------------------------------------------------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................23120.17200000000001001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGC---------AAATTTTTCTCACGT-----------------CGCA.......................................................................................................................................................2560.17100000000100000000
.......................................................AACCATAATGAGAAGGCACTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21190.16300000000000003000
..........................................................................TACTT--TCATTTG---------------------------------------------------------------------TGCA-CTTAATG-------CA-..................................................................................................................................................................................................................................................................................................................................................................................................................................................25190.16300000020100000000
..............................................................ATGAGAAGGCACTACTT--TCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20130.15200000000002000000
.......................................................AACCATAATGAGAAGGCACTACTT--TCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27130.15200000000000002000
............................................................TAATGAGAAGGCACTACTT--TCAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23130.15200000000000011000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTCTCACGT-----------------CGCAA-----------------------------.........................................................................................................................17200.15300000010002000000
..........................................................CATAATGAGAAGGCACTACTT--....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21140.14200000000002000000
................................................................GAGAAGGCACTACTT--....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15140.14200000000002000000
.....................................................................................................................................................................................................................................................................................................................................................................................................TTTTCGAAAACTTTAATGTGTATTT.......................................................................................................................................................................................................2580.13100000000100000000
.................................................TCATAAAACCATAATGAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19160.13200000001010000000
....................................................TAAAACCATAATGAGAAGGCACTAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25170.12200000000000002000
....................................................TAAAACCATAATGAGAAGGCACTAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25170.12200000000000002000
................................................TTCATAAAACCATAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................16170.12200000011000000000
....................................................TAAAACCATAATGAGAAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20170.12200000000001001000
...................................................ATAAAACCATAATGAGAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20170.12200000000002000000
....................................................................................................................................................................................................TTTTTATACA---CA----------------------------------------------------------------------------------------------------TTTGTTTT---------TTATTA.......................................................................................................................................................................................................................................................................................26200.10200000020000000000
.......................................................................CACTACTT--TCATTTG---------------------------------------------------------------------TGCA-CTTAACA-------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.10200002000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTATTTTGC---------AAAT.......................................................................................................................................................................................16200.10200000000002000000
......................................................AAACCATAATGAGAAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................17200.10200000000002000000
.......................................................................CACTACTT--TCATTTG---------------------------------------------------------------------T.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................16200.10200000000002000000
..............................................................ATGAGAAGGCACTACTT--TCATTTG---------------------------------------------------------------------T.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................25100.10100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTATTTTGC---------AAA........................................................................................................................................................................................15200.10200000000002000000
..................................................................................................................................................................................................TTTTTTTATACA---CA----------------------------------------------------------------------------------------------------TTTGTTTT---------TTA..........................................................................................................................................................................................................................................................................................25200.10200000000200000000
...............................................................TGAGAAGGCACTACTT--TCATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21120.08100000000001000000
.............................................................AATGAGAAGGCACTACTT--TCATTTG---------------------------------------------------------------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................25120.08100000000001000000
................................................................GAGAAGGCACTACTT--TCATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20120.08100000000001000000
........................................................ACCATAATGAGAAGGCACTACTT--TC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25130.08100010000000000000
.......................................TTCATTATTTTCATAAAACCATAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24130.08100000000000001000
.......................................................AACCATAATGAGAAGGCACTACTT--TCAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29130.08100000000000001000
.......................................................AACCATAATGAGAAGGCACTACTT--TCAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28130.08100000000000010000
..........................................................CATAATGAGAAGGCACTACTT--TCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24130.08100000000001000000
................................................................GAGAAGGCACTACTT--TCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18130.08100000000001000000
.........................................CATTATTTTCATAAAACCATAATGAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27130.08100000000010000000
..............................................................ATGAGAAGGCACTACTT--TC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19130.08100000000001000000
............................................................TAATGAGAAGGCACTACTT--TC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21130.08100000000001000000
.......................................................AACCATAATGAGAAGGCACTACTT--TCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27130.08100000000001000000
........................................TCATTATTTTCATAAAACCATAATGAGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29130.08100000000010000000
..........................................................CATAATGAGAAGGCACTACTT--T...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22140.07100000000001000000
...............................................................................................................................................................................................................................................................................................................................................................................................................CTTTAATGTGTATTTTGC---------...........................................................................................................................................................................................18140.07100000000001000000
......................................................AAACCATAATGAGAAGGCACTACTT--....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25140.07100000000001000000
.......................................................AACCATAATGAGAAGGCACTACTT--C...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25140.07100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................................................TTCGAAAACTTTAATGTGTATTT.......................................................................................................................................................................................................23140.07100000000001000000
...............................................................TGAGAAGGCACTACTT--....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................16140.07100000000001000000
.................................................................AGAAGGCACTACTT--T...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15140.07100000000001000000
......................................................AAACCATAATGAGAAGGCACTACTT--T...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26140.07100000000000001000
.......................................................AACCATAATGAGAAGGCACTACTT--A...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25140.07100000000000001000
.....................................................AAAACCATAATGAGAAGGCACTACTT--A...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27140.07100000000000001000
............................................................TAATGAGAAGGCACTACTT--T...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20140.07100000000001000000
....................................................TAAAACCATAATGAGAAGGCACTACTT--A...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28140.07100000000000001000
.................................................TCATAAAACCATAATGAGAAGGCACTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27160.06100000000010000000
............................................TATTTTCATAAAACCATAATGAGAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27160.06100000010000000000
....................................................TAAAACCATAATGAGAAGGCACTACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26160.06100000000000001000
...........................................TTATTTTCATAAAACCATAATGAGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26160.06100000000100000000
................................................TTCATAAAACCATAATGAGAAGGATT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26160.06100000000001000000
..............................................TTTTCATAAAACCATAATGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20160.06100000000001000000
.................................................TCATAAAACCATAATGAGAAGGCAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25160.06100000000000001000
............................................TATTTTCATAAAACCATAATGAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24160.06100000000100000000
...........................................TTATTTTCATAAAACCATAATGAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25160.06100000000010000000
.......................................................AACCATAATGAGAAGGCACTACTG--....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24160.06100000000001000000
...................................................ATAAAACCATAATGAGAAGGCACTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25170.06100000000000001000
.......................................................AACCATAATGAGAAGGCACTACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23170.06100000000001000000
....................................................TAAAACCATAATGAGAAGGCACTATA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26170.06100000000000001000
....................................................TAAAACCATAATGAGAAGGCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22170.06100000000000001000
.....................................................AAAACCATAATGAGAAGGCACTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23170.06100000000000001000
....................................................TAAAACCATAATGAGAAGGCACTAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25170.06100000000000001000
......................................................AAACCATAATGAGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................16180.06100000000001000000
.............................................................AATGAGAAGGCACTAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................16180.06100000000001000000
..............................................................ATGAGAAGGCACTAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15180.06100000000001000000
...........................................................ATAATGAGAAGGCACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................16180.06100000000001000000
.......................................................AACCATAATGAGAAGGCACACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22180.06100000000010000000
..........................................................................TACTT--TCATTTG---------------------------------------------------------------------TGCA-CTTAATG-------CA-T.................................................................................................................................................................................................................................................................................................................................................................................................................................................26190.05100000000000001000
...............................................................TGAGAAGGCACTACG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15200.05100000000001000000
........................................................................ACTACTT--TCATTTG---------------------------------------------------------------------TGCA-CTTAAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100001000000000000
......................................................................................................................................................................................................TTTATACA---CA----------------------------------------------------------------------------------------------------TTTGTTTT---------TTATTA.......................................................................................................................................................................................................................................................................................24200.05100000010000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTCTCACGT-----------------CGCAA-----------------------------G-.......................................................................................................................18200.05100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--TTTTTTT---TTTTTTTT......................................................................................16200.05100000010000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----------------------------G-C-------TTTTT--TTTTTTT---..............................................................................................15200.05100000000010000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTT--TTTTTTT---TTTTTTTTTT--T--------------------------------------------------------------------------------.22200.05100000010000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTTTCTCACGT-----------------CGCAA-----------------------------G-C-------C..............................................................................................................22200.05110000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTCTCACGT-----------------CGCAA-----------------------------G-C-------...............................................................................................................18200.05100000000001000000
droSec2
CGAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAATCGACTT---------------------------------------------------------------------------------------------------------------------------------------------------TA-GAATTTTTTCTTGTTTTGG----------------------------------------------------------------CTTAAA----------------------T------------TGATCAAA-GAAAT--AAAAATCA-------TTGTT--TTTTTTT---TTTTTTTTTT--T--------------------------------------------------------------------------------TSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
TTATTTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCTCTGAAAA---TGCTAATATGATACATATTTAATAAAATAAATTAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------------T-TAAAG--AAAAAAAA-------TTT----TTATTTT---TTTTTATTTT--T--------------------------------------------------------------------------------TSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...................................................................................................................................................................................................TTCTCTGAAAA---TGCTAATATGATACA.....................................................................................................................................................................................................................................................................................................................................................................................................2612.00202000000000
droEre2
TAACATTTTATGTGATAGACCAGT-CAAAAAGCTTTCGGGTCGTTGATTTCA----------------------------------------------------------------------------AATTGATTACTAATTATATTAACAGAAAAAGCATC----------------------------------------------------------TAAGCC-----------------------------------TTGTTGAGTAGTGCATTTTTTATAAATG-----CAAAAGCAGAGAAGCA---------------------------------TA-A---------------------------------------------------------------------------------------------------------------ACTT-----------------------------TCC-------ATA----CTTTTTT---TTTTTTTTTT--A--------------------------------------------------------------------------------GSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/17/2015 at 10:57 PM