ID:

dps_640

 Coordinate:

2:18275468-18275618 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-8.1 -8.1 -8.0

Flybase annnotation

exon [Dpse\GA11933:3]; CDS [Dpse\GA11933-cds]; intron [Dpse\GA11933-in]

Repeatable elements

NameClassFamilyStrand
DMCR1ALINECR1+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ATGAAAAAAATCCCGATGTTGTACCGGAAACTATTGATTCAGATGATCAGGTAAGAGTCGAGTCATTTAAGTATTAATTATATCTAGAGAAATCGGCTCGATCACTAACCATACAGTATATAGATGTGGCAGTTCATTCAACGAACATGTTGCACAGCGATGGGAGTTTCACACGCGCATCCTAGTCAAGGCCCCGCAGAGCAAAGAGTAAGAAGTTTTTGTACTTTGTACGGAGGGCACCATACACAGGA
***************************************************************************************************************.............(((((((((((.......)))).))))))).............************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 V112
male body		 GSM343916
embryo
 M059
embryo
 GSM444067
head
 M022
male body
...............................................................................................................................................................................CGCATTCTAGTCAAGACCCGG....................................................... 21 3 2 34.50 69 55 13 0 0 0 1
................................................................................................................................................................................GCATTCTAGTCAAGACCCGG....................................................... 20 3 5 2.60 13 12 1 0 0 0 0
..................................................................................................................................................................................................................................TGTACGGAGGGCACCATACACAGGA 25 0 1 2.00 2 0 0 2 0 0 0
...............................................................................................................................................................................CGCATTCTAGTCAAGACCC......................................................... 19 2 2 1.50 3 3 0 0 0 0 0
................................................................................................................................................................................GCATTCTAGTCAAGACCCGGC...................................................... 21 3 4 1.25 5 5 0 0 0 0 0
.................................................................................................................................................................................................................................TTGTACGGAGGGCACCATACACAGGA 26 0 1 1.00 1 0 0 1 0 0 0
.............................................................................................................................................................................................................................TACTTTGTACGGAGGGCACCATACAC.... 26 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................................................................CATCCTGGTCAAGGCCCCA....................................................... 19 2 1 1.00 1 0 0 0 0 1 0
.................................................................................................................................................................................CATTCTAGTCAAGACCCGG....................................................... 19 3 12 1.00 12 9 1 0 0 0 2
.............................................................................................................................................................................................................................TACTTTGTACGGAGGGCAC........... 19 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................TGTTGCACAGCGATGGGAGT.................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................................................................................................................TGTACTTTGTACGGGGGGC............. 19 1 1 1.00 1 1 0 0 0 0 0
..................................................................................................................................................................................................................................TGTACGGAGGGCACCATACACAG.. 23 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................................................................CGCATTCTAGTCAAGACCCGGC...................................................... 22 3 1 1.00 1 0 1 0 0 0 0
...............................................................................................................TACAGTATATAGATGTGGCAGTTCATT................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0
..................................................................................................................................................................................................................................GGTACGCAGGGCACCATACACAGGA 25 2 2 0.50 1 0 0 1 0 0 0
.......................................................................................................................................................................................AGTCAAGGCCCCGCAGAGCAAAGAG........................................... 25 0 4 0.50 2 1 0 0 1 0 0
..............................................................................................................................................................................GCGCATTCTAGTCAAGACCCG........................................................ 21 3 2 0.50 1 1 0 0 0 0 0
...............................................................................................................................................................................CGCATTCTTGTCAAGACCC......................................................... 19 3 11 0.45 5 4 0 0 0 0 1
..............................................................................................................................................................................ACGCATTCTAGTCAAGACCCC........................................................ 21 3 3 0.33 1 1 0 0 0 0 0
.........................................................................................................................................................................................TCAAGGCCCCGCAGAGCAAAGAG........................................... 23 0 4 0.25 1 1 0 0 0 0 0
.........................................................................................................................................................................................TCAAGGCCCCGCAGAGCAAAGAGT.......................................... 24 0 4 0.25 1 1 0 0 0 0 0
.....................................................................................................................................................................................................................................ACGGAGGGCGCCATGCGCAGG. 21 3 4 0.25 1 1 0 0 0 0 0
.........................................................................................................................................................................................TCAAGGCCCCGCAGAGCAAAGAGTAA........................................ 26 0 4 0.25 1 1 0 0 0 0 0
..........................................................................................................................................................................................CAAGGCCCCGCAGAGCAAAGAG........................................... 22 0 4 0.25 1 1 0 0 0 0 0
.....................................................................................................................................................................................CGAGTCAAGGCCCCGCAGAGCAAAGAG........................................... 27 1 4 0.25 1 0 0 0 1 0 0
...............................................................................................................................................................................CGCATTCTTGTCAAGACCCC........................................................ 20 3 4 0.25 1 1 0 0 0 0 0
...............................................................................................................................................................................CGCATCCTGGTCACGGCACC........................................................ 20 3 8 0.25 2 0 0 0 2 0 0
.........................................................................................................................................................................................TCAAGGCCCCGCAGAGCAAAG............................................. 21 0 5 0.20 1 0 0 1 0 0 0
.........................................................................................................................................................................................TCAAGGCCCCGCAGAGCAAAGA............................................ 22 0 5 0.20 1 1 0 0 0 0 0
.....................................................................................................................................................................................CGAGTCAAGGCCCCGCAGAGC................................................. 21 1 5 0.20 1 0 0 0 1 0 0
................................................................................................................................................................................GCATTCTAGTCAAGACCC......................................................... 18 2 7 0.14 1 1 0 0 0 0 0
.........................................................................................................................................................................................TCAAGGCCCCGCAAAGCAAGGAG........................................... 23 2 8 0.13 1 0 0 0 1 0 0
........................................................................................................................................................................................................................................GAGGGCACCATACACAGG. 18 0 20 0.10 2 2 0 0 0 0 0
...........................................................................................................................................................................................AAGGTCCCGCAGAGCACAGAGTAA........................................ 24 2 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

TACTTTTTTTAGGGCTACAACATGGCCTTTGATAACTAAGTCTACTAGTCCATTCTCAGCTCAGTAAATTCATAATTAATATAGATCTCTTTAGCCGAGCTAGTGATTGGTATGTCATATATCTACACCGTCAAGTAAGTTGCTTGTACAACGTGTCGCTACCCTCAAAGTGTGCGCGTAGGATCAGTTCCGGGGCGTCTCGTTTCTCATTCTTCAAAAACATGAAACATGCCTCCCGTGGTATGTGTCCT
************************************************************************************.............(((((((((((.......)))).))))))).............*************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 V112
male body		 SRR902011
testis
 SRR902010
ovaries
 M022
male body		 M062
head
 M059
embryo
 GSM444067
head
...............................................................................................................................................................................GCGTAAGATCAGTTCTGGGCC....................................................... 21 3 2 38.00 76 72 3 0 0 1 0 0 0
...............................................................................................................................................................................GCGTAAGATCAGTTCTGGG......................................................... 19 2 2 8.00 16 16 0 0 0 0 0 0 0
..............................................................................................................................................................................CGCGTAAGATCAGTTCTGGGC........................................................ 21 3 2 4.50 9 9 0 0 0 0 0 0 0
................................................................................................................................................................................CGTAAGATCAGTTCTGGGCC....................................................... 20 3 5 4.00 20 18 1 0 0 1 0 0 0
................................................................................................................................................................................................GGGCGTCTCGTTTCTCATTCT...................................... 21 0 3 2.00 6 3 1 2 0 0 0 0 0
......................................................................................................................................................................................AACAGTTCCGGGGCGTCTCGT................................................ 21 1 1 2.00 2 2 0 0 0 0 0 0 0
...............................................................................................................................................................................GCGTAAGAACAGTTCTGGG......................................................... 19 3 11 1.36 15 15 0 0 0 0 0 0 0
...........................................................................................................................................................................GTGCGCGTAGGAAGAGTCC............................................................. 19 3 14 1.21 17 16 1 0 0 0 0 0 0
..............................................................................................................................................................................TGCGTAAGATCAGTTCCGGG......................................................... 20 2 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................................TGCTTGTACAACGTGTCGCTACCCT...................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................................CGAGCTAGTGATTGGTATGTCATATA.................................................................................................................................. 26 0 1 1.00 1 0 0 0 1 0 0 0 0
...................................................................................................................................................................................................CGTCTCGTTTCTCATTCTTCA................................... 21 0 4 0.75 3 1 0 2 0 0 0 0 0
................................................................................................................................................................................CGTAAGATCAGTTCTGGG......................................................... 18 2 7 0.71 5 5 0 0 0 0 0 0 0
...............................................................................................................................................................................GCGTAAGAACAGTTCCGGGCC....................................................... 21 3 2 0.50 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................................TGCGTAGGATCAGTTCTGGGC........................................................ 21 3 2 0.50 1 1 0 0 0 0 0 0 0
.................................................................................................................................................................................GTAAGATCAGTTCTGGGCC....................................................... 19 3 12 0.42 5 5 0 0 0 0 0 0 0
..............................................................................................................................................................................................CGGGGCGTCTCGTTTCTCA.......................................... 19 0 20 0.40 8 8 0 0 0 0 0 0 0
..............................................................................................................................................................................CGCGTAAGAACAGTTCTGGG......................................................... 20 3 5 0.40 2 2 0 0 0 0 0 0 0
...............................................................................................................................................................................................GGGGCGTCTCGTTTCTCATTC....................................... 21 0 3 0.33 1 1 0 0 0 0 0 0 0
............................................................................................................................................................................................TCCGGGGCGTCTCGTTTCTCATAC....................................... 24 1 3 0.33 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................GGGGCGTCTCGTTTCTCAT......................................... 19 0 20 0.30 6 6 0 0 0 0 0 0 0
..................................................................................................................................................................................................GCGTCTCGTTTCTCATTCTTC.................................... 21 0 4 0.25 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................TCCGGGCGTCTCGTTTCTCATTCTTC.................................... 26 2 4 0.25 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................CTCGTTTCTCATTCTTCAAAA................................ 21 0 4 0.25 1 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................GGCGTCTCGTTTCTCATTCTT..................................... 21 0 4 0.25 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................GTTCCGGGGCGTCTCGTTTC............................................. 20 0 5 0.20 1 1 0 0 0 0 0 0 0
................................................................................................................................................................................................GGGCGTCTCGTTTCTCGTTCT...................................... 21 1 5 0.20 1 0 0 1 0 0 0 0 0
...............................................................................................................................................................................................GGGGCGTCTCGTTTTTCATTC....................................... 21 1 5 0.20 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................GTTCCGGGGCGTCTCGTTT.............................................. 19 0 5 0.20 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................TCAGTTCCGGGGCGTCTCGT................................................ 20 0 5 0.20 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................ACAGTTCCGGGGCGTCTCG................................................. 19 1 5 0.20 1 1 0 0 0 0 0 0 0
............................................................................................................................................................................................TCCGGGGCGTCTCGTTTCTCATT........................................ 23 0 20 0.15 3 3 0 0 0 0 0 0 0
............................................................................................................GGTATGTCATATATCTACAC........................................................................................................................... 20 0 20 0.15 3 0 0 3 0 0 0 0 0
............................................................................................................................................................................TGCGCGTAGGAAGAGTCC............................................................. 18 3 20 0.15 3 3 0 0 0 0 0 0 0
.................................................................................................................................................................................................TGCGTCTCGTTTCTCATTCTTC.................................... 22 1 7 0.14 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................AGTTCCGGGTCGTCTCGTTT.............................................. 20 1 7 0.14 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................TGTCGCTCCCATCATAGTG............................................................................... 19 3 7 0.14 1 0 0 0 0 0 1 0 0
..............................................................................................TCAAGCTAGTGATTGGTATGTCATATA.................................................................................................................................. 27 2 9 0.11 1 1 0 0 0 0 0 0 0
......................................................................................................GTGATTGGTATGTCATATA.................................................................................................................................. 19 0 20 0.10 2 2 0 0 0 0 0 0 0
...........................................................................................................TGGTATGTCATATATCTAC............................................................................................................................. 19 0 20 0.10 2 0 0 2 0 0 0 0 0
...........................................................................................................................................................................GTGCGCGTAGGAAGAGTC.............................................................. 18 3 20 0.10 2 2 0 0 0 0 0 0 0
.............................................................................................................................................................................................CCGGGGCGTCTCGTTTGTCAT......................................... 21 1 20 0.05 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................GGGGCGTCTCGTTTCTCA.......................................... 18 0 20 0.05 1 1 0 0 0 0 0 0 0
.....................................................................................................AGTGATTGGTATGTCATATATCTAC............................................................................................................................. 25 0 20 0.05 1 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................CGGGGCGTCTCGTTTCTCATT........................................ 21 0 20 0.05 1 0 0 0 0 0 1 0 0
............................................................................................................................................................................................TCCGGGGCGTCTCGTTTCTCAT......................................... 22 0 20 0.05 1 0 0 0 0 0 0 1 0
.............................................................................................................................................................................................CCGGGGCGTCTCGTTTCTCA.......................................... 20 0 20 0.05 1 0 0 0 0 0 0 0 1
.............................................................................................................................................................................................CCGGGGCGTCTCGTATCTCA.......................................... 20 1 20 0.05 1 1 0 0 0 0 0 0 0
.............................................................................................GTCGAGCGATTGATTGGT............................................................................................................................................ 18 3 20 0.05 1 1 0 0 0 0 0 0 0
...........................................................................................................TGGTATGTCATATATCTACA............................................................................................................................ 20 0 20 0.05 1 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................TTCCGGGGCGTCTCGTTTTTCAT......................................... 23 1 20 0.05 1 1 0 0 0 0 0 0 0
...................................................................................................................CATATATCTACATCGTCAAGTATGTT.............................................................................................................. 26 2 20 0.05 1 0 0 1 0 0 0 0 0
................................................................................................................................................................................................GGGCGTCTCGTTTCTCAT......................................... 18 0 20 0.05 1 0 0 1 0 0 0 0 0
................................................................................................................................................................................................GGGCGTCTCGTTTGTCAT......................................... 18 1 20 0.05 1 0 0 1 0 0 0 0 0
............................................................................................................GGTATGTCATATATCTACA............................................................................................................................ 19 0 20 0.05 1 0 0 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 2:18275418-18275668 - dps_640 ATGAAAAAAATCCCGATGT-TGTACCGGAAACTATTGATTCAGATGATCAGGTAAGAGTCGAGTCATTTAAGTATTAATTATATCTAGAGAAATCGGCTCGATCACTAACCA---------------------------------TACAGTATATAGA-TGTGGCA-GTTCA------------------TTCA-ACGAACATGTT-GCACAGCGATGGGAGTTTCACACGCGCATCCT-AGTCAAGGCCCCGCAGAGCAAAGAGTAA---GAAGTTTTT----------------------------GTACTTTGTACGGAGGGCACCATACACAGGA------
droPer2 scaffold_3:637230-637479 - ATGAAAAAAATCCCGATGT-TGTACCGGAAACTATTGATTCAGATGATCAGGTAAGAGTCGAGTCATTTAAGTATTAATTATATCTAGAGAAATCGGTTCGATCACTAACCA---------------------------------TACAGTATATAGA-TGTGGCA-GTTCA------------------TTCA-ACGAACATGTT-GCACATCGATGGGAGTCTCACACCCGCATCCC-AGTCAAGGC-CCGCAGAGCAAAGAGTAA---GAAGTTTTT----------------------------GTACTTTGTACGGAGGGCACCATACACAGGA------
droWil2 scf2_1100000004762:197609-197889 + AGAATAAAATTTCTGGTATGTCTACGGGGTATAGATGTTTCAATAGCTCAGGA--GAGTC-----------------------------------TATTTTACCTATTAAAAGTTTGTGAATAAAGATAGCACCAATCATTACTCTACGATTAATTAAAGAAGGAAGATTGA------------------TTAAAAGAAGCCTACT-GGAGTATGATGGCAAATTGACATTGCGATCCCGAATCACAACCGCGAAGAGCAAAACGCAGAGCAGAATGCTTTTGAACAGAT--TCAAATTTACTTTGGCGCGTCTCATATTGAGGTCACCATATGCACGA------
droVir3 scaffold_12954:1781739-1781953 - TAGTC--------------------------------------------TAGTAGGAATAAAGAAATTTAATTGGCTAAACAATATAGAAGATTCAATTTCACCAGTAATTATTTTATGAATAAATATTATACCTAACATGGTTCTACGAATT------------------------------------------AGAAGTCTGCT-GGAGTATGACGGTACCCACACGCAAGGATCCC-AATTTAAGCCACGGAGGGCAAACAACAA---TTATTGTTTCTGAACCGAT--TCAATTCTGTCCTGGT-------------------------------------
droMoj3 scaffold_6121:303-461 + TAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------GATGGCAGATCAA------------------TTAGCTGGAGCCTACT-ATGATAAGACGGTAATCTTAAATTACTGTCCC-ATCTAAGGTCTCTTAAGGCAAAGAGAAG---AAACTGTTTTTGGACCGAT--TCGATACGATCCTGATACAGTTTATGTTGCGGAGACCATACGGCAGA------
droGri2 scaffold_14906:13566278-13566365 - ACGAAAGAAACCCGGATGT-GGTCCCCGAAATTATTGATTTCGATGATCAAGT----------------------------------------------------------------------------------------------------------------AAGTTA-------------------ACATAGATAAGTTGTT-TCAA---------------------------------------------------------------------------TAAT--TTTATC-----------------------------------------------
droAna3 scaffold_13260:1930768-1930955 - ATTAA--------------------------------------------------------------------------------------------------------TTAGATTATATAGAAAAACGACACCCAGCATCGTTCTACGGTTTGTTAATGAAGGTAAGTTCA------------------GTTAAAAAAGTCACTATGTGTTAAGAGGGAAGGTGAAGATTTGCATCCC-AATTAAGTTCTCTAAGGGCGAAAATGAG---GTGCTTTTTTTGTACAGATCGTGATTTCGGTC-------------------------CGTATTGAGAA------
droBip1 scf7180000393437:3270-3449 + ATTAA--------------------------------------------------------------------------------------------------------TTAGGCTATGTAGAAAAACTACACCGAGCATTGTCCTACAATTTGTTAAGCGAGGTAAGTTTA------------------TAAGTAAGAGTATTTT-ATTATAAAATGGAAGGTGAAGATGTGCATCCC-AGTTTAGACCTCTAATAGAAAAAATTAC---GAAATTCTTTTGCACGG--------------------------------GGGGACTCTAGACACATGA------
droKik1 scf7180000302785:88258-88388 + TAGCT-----------------------------------------------------------------------------------------------------------------------------------------------------------ATGGAG-GGTAAGTTAACGAAGTTAAGTAAGTTATAGAAGTCTACT-AC----------------------AGCATCCC-AGGGTAGGCTACGGAGGGCGAAAAATAA---AATATTCTTTTGTACAGAT--TCAATAT-----------------------GGACTCCAAATTGAGGA------
droFic1 scf7180000454104:1286349-1286431 + ACGAAAAGAATCCGGATGT-TGTCCCAGAATCGGTTGAAGCTGATGAACAGGT------------------------------------------------------------------------------------------------------------------------------------------AATTAGATA-----------------------------------------------------------------------------TTTATAAATATAT--TTAGG--------------------------------------AGAA------
droEle1 scf7180000491046:4350866-4351001 + GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTCTATC-CAACTAAGATGGTAGGTGACGATGGGTATCCC-AGTTTAAACCACGTAGAGCAAACAAAAA---GAACTGTTTCTGTTCCGAT--TTTATAAGATCCTGATAATTGGTATATTTGAGAGACCAAACACACGA------
droRho1 scf7180000772536:10965-11171 + ATTAA-----------------------------------------------------------------------------------------------------------GTTTATAAATAAAAATTGTGCCAAGCATCGTTCTACGGTTTAATAAAGATGGTAGATTAA------------------TTAGGAGAAGTCTACT-AGAGAAGGATGGTAAAATAAGGCTTGCATTCC-AGTTAAGGCCCCGTAAAGCAAATAATTA---AAAGTTATTTTGCACAGAC--TCTATCCGGTCTATATGTACACCATACTGAGGACTCCAAACTGCTGA------
droBia1 scf7180000301438:6723-6907 + TTTATAATATT-------------------------------------------------------------------------------------------------------------ATAAAAATAGTATCAAGCATTGTTCTACGATTTACAAGTGTAGGTA-ATTAA------------------GCAATTGTAATTTACT-CCGGTAGGAAGGTAGCCTTACGTTTTGATCCC-AGTTCAAACGACGCAGTGCAAATAAAA----GACATTTTTTCGTACTGAC--TCAATACGGTCAATGTGCACTA------------------CAATACA------
droTak1 scf7180000415021:28478-28676 + TATGC-------------------------------------------------------------------------------------------------------------------ATAAAAATAGTACCGAGCATTATTCTACGATTTGCAAGTGTTGGTAAATTAT------------------GCAATAATAATCTACA-TTGGTAGGAAGGTAGCATTACGTTTTGATCCC-AGTTCAAACTACGAAGAGCAAAAAGAAG---GAATTTTTCTTGTACCGAC--TTTATACGGTGAATGTGCACTTGGTATTGTGGGCTCCAAACCGAAGA------
droEug1 scf7180000409380:2008-2182 + CACTA-------------------------------------------------------------------------------------------------------ATAAGATTGTTAATAAA-----------------------------------AAGGTAAGTTTA------------------TTA-GAATAGTCTGCT-TTTATAGGAGGGAAGATGTAAGTTTGCATCCC-AATTTTGGCCGCGAAGAGCAAATAAGAG---AAAGCTTTTTTGAATTGAT--TCTATACGGTCTTGGTGGACCGCGTACTGGGGGTTCCAGACGCAAGA------
dm3 chr4:953494-953653 + GA---------------------------------------------------------------------------------------------------------------------------------------------------------------CGGTAAATTAA------------------ATTAACGTAGTGTACT-GGAATAAGGAGGTAATATACGGTTTGCATCCC-ACTTTAGGCGCCGCA-AGCAAAACGTAA---TAAGTTTTTTTGGACCGAT--TCAATGCGGTCCGAGTGGACTGCGTATTGTGGACTCCAAACAGGTGATAGTGA
droSim2 3l:23594567-23594723 - GTG-------------------------------------------------------------------------------------------------------------------------------------------------------------ACGGTAAATTAA------------------ATAAAAGTAGTCTACT-GGAATAAGAAGGTAATATACGGCTTGCATCCC-AATTTAGGCGCCGCAAGGCAAAAAGTAA---AAAGTTTTTTTAGACCGAT--TCAATGCGGTCCGAGTGGACTGCGTATTGTGGACTCCAAACAGGTGA------
droSec2 scaffold_111:67643-67785 - AA----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAA------------------TTAAACGTAGTCTACT-GGAATATGAAGGTAGTA-----TCCCAATCAC-AATTTAGGCGCCACAAGGCAAACAGTAA---GAAGTTTTATTGTACCGAT--TCAATTTGGTCCGAGTAAACTACATATTGAGGACTCCAAACTGGTGA------
droYak3 2L:21930178-21930340 + TAGC-------------------------------------------------------------------------------------------------------------------------------------------------------TAAGGAGGGTAAGTTAA------------------TTAACATGAGTCTACT-TGAATAAAGAGGTAATCTAAGGTTTGCATCCC-AATTAAGGCGCCGTAAGGCAAAAAGTAA---GAAGTTCTTTTGAACCGAT--TCAATTCGGTCCGAGTAAACTTCATATTGTGGACTCCAAACAGGTGA------
droEre2 scaffold_4784:23449194-23449273 - ATG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAATGTTAATTTCGCATCCC-AATTTAGGCGCCGTACGGCAAACAGTAA---AAAGCTTCTTTGAACCGAT--TCCATGCGA--------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
ATGAAAAAAATCCCGATGT-TGTACCGGAAACTATTGATTCAGATGATCAGGTAAGAGTCGAGTCATTTAAGTATTAATTATATCTAGAGAAATCGGCTCGATCACTAACCA---------------------------------TACAGTATATAGA-TGTGGCA-GTTCA------------------TTCA-ACGAACATGTT-GCACAGCGATGGGAGTTTCACACGCGCATCCT-AGTCAAGGCCCCGCAGAGCAAAGAGTAA---GAAGTTTTT----------------------------GTACTTTGTACGGAGGGCACCATACACAGGA------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................................................................................................................................................................................................................................................................................................................TGTACGGAGGGCACCATACACAGGA------2512.0020000200000
.........................................................................................................................................................................................................................................................................................................................TTGTACGGAGGGCACCATACACAGGA------2611.0010000100000
.....................................................................................................................................................................................................................................................................................................................TACTTTGTACGGAGGGCACCATACAC..........2611.0010100000000
.....................................................................................................................................................................................................................................................................................................................TACTTTGTACGGAGGGCAC.................1911.0010100000000
..........................................................................................................................................................................................................TGTT-GCACAGCGATGGGAGT..........................................................................................................................2011.0010100000000
..........................................................................................................................................................................................................................................................................................................................TGTACGGAGGGCACCATACACAG........2311.0010100000000
.................................................................................................................................................TACAGTATATAGA-TGTGGCA-GTTCA------------------TT.........................................................................................................................................................2711.0010100000000
................................................................................................................................................................................................................................................AGTCAAGGCCCCGCAGAGCAAAGAG................................................................................2540.5020110000000
..................................................................................................................................................................................................................................................TCAAGGCCCCGCAGAGCAAAGAG................................................................................2340.2510100000000
..................................................................................................................................................................................................................................................TCAAGGCCCCGCAGAGCAAAGAGT...............................................................................2440.2510100000000
..................................................................................................................................................................................................................................................TCAAGGCCCCGCAGAGCAAAGAGTAA---..........................................................................2640.2510100000000
...................................................................................................................................................................................................................................................CAAGGCCCCGCAGAGCAAAGAG................................................................................2240.2510100000000
..................................................................................................................................................................................................................................................TCAAGGCCCCGCAGAGCAAAG..................................................................................2150.2010000100000
..................................................................................................................................................................................................................................................TCAAGGCCCCGCAGAGCAAAGA.................................................................................2250.2010100000000
................................................................................................................................................................................................................................................................................................................................GAGGGCACCATACACAGG.......18200.1020200000000
droPer2
ATGAAAAAAATCCCGATGT-TGTACCGGAAACTATTGATTCAGATGATCAGGTAAGAGTCGAGTCATTTAAGTATTAATTATATCTAGAGAAATCGGTTCGATCACTAACCA---------------------------------TACAGTATATAGA-TGTGGCA-GTTCA------------------TTCA-ACGAACATGTT-GCACATCGATGGGAGTCTCACACCCGCATCCC-AGTCAAGGC-CCGCAGAGCAAAGAGTAA---GAAGTTTTT----------------------------GTACTTTGTACGGAGGGCACCATACACAGGA------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..........................................................................................................TAACCA---------------------------------TACAGTATATAGA-TGTG......................................................................................................................................................................................23200.051010000
droWil2
AGAATAAAATTTCTGGTATGTCTACGGGGTATAGATGTTTCAATAGCTCAGGA--GAGTC-----------------------------------TATTTTACCTATTAAAAGTTTGTGAATAAAGATAGCACCAATCATTACTCTACGATTAATTAAAGAAGGAAGATTGA------------------TTAAAAGAAGCCTACT-GGAGTATGATGGCAAATTGACATTGCGATCCCGAATCACAACCGCGAAGAGCAAAACGCAGAGCAGAATGCTTTTGAACAGAT--TCAAATTTACTTTGGCGCGTCTCATATTGAGGTCACCATATGCACGA------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.............................................................................................................................................................................................................T-GGAGTATGATGGCAAATTGACATTG.................................................................................................................26200.651307060
..........................................................................................................................AAAGATAGCACCAATCATTACTCTACGAT..................................................................................................................................................................................................2920.50101000
...............................................................................................................................................................................................TAAAAGAAGCCTACT-GGAGTATGATGG..............................................................................................................................27200.45908100
....................................................................................................................................................GATTAATTAAAGAAGGAAGATTGA------------------T..........................................................................................................................................................25200.40800170
...............................................................................................................................................................................................TAAAAGAAGCCTACT-GGAGTATGAT................................................................................................................................25200.25500050
.........................................................................................................................................................................................................................GGCAAATTGACATTGCGATCCCG.........................................................................................................2340.25101000
..........................................................................................................................................................................................................TACT-GGAGTATGATGGCAAATTGAC.....................................................................................................................25200.20400040
................................................................................................................................................CTACGATTAATTAAAGAAGGAAGATTG..............................................................................................................................................................................27200.15300030
................................................................................................................................................CTACGATTAATTAAAGAAGGAAGAT................................................................................................................................................................................25200.15303000
........................................................................................................TATTAAAAGTTTGTGAATAAAGATAGC......................................................................................................................................................................................................................27200.10200020
........................................................................................................................................................................TTGA------------------TTAAAAGAAGCCTACT-GGAG......................................................................................................................................24200.10200020
...............................................................................................................................................................GAAGGAAGATTGA------------------TTAAAAGAAGCC...............................................................................................................................................25200.10220000
..................................................................................................................................................ACGATTAATTAAAGAAGGAAGAT................................................................................................................................................................................23200.10202000
..................................................................................................................................................ACGATTAATTAAAGAAGGAAGATTGA------------------T..........................................................................................................................................................27200.10200020
.....................................................................................................................................................................................................................TGATGGCAAATTGACATTGC................................................................................................................20200.05101000
................................................................................................................................................................................................AAAAGAAGCCTACT-GGAGTATGATGGC.............................................................................................................................27200.05100010
......................................................................................................................................................................................................AGCCTACT-GGAGTATGATGGC.............................................................................................................................21200.05100010
......................................................................................................................................................................................................AGCCTACT-GGAGTATGATGGCAAATTGA......................................................................................................................28200.05101000
..................................................................................................................................................................................................AAGAAGCCTACT-GGAGTATGATGG..............................................................................................................................24200.05100010
........................................................................................................................................................................TTGA------------------TTAAAAGAAGCCTACT-GGAGTA....................................................................................................................................26200.05101000
..........................................................................................................................................................................GA------------------TTAAAAGAAGCCTACT-GGA.......................................................................................................................................21200.05101000
.........................................................................................................................................................................................................CTACT-GGAGTATGATGGCAAA..........................................................................................................................21200.05101000
...................................................................................................................................................................GAAGATTGA------------------TTAAAAGAAGCC...............................................................................................................................................21200.05101000
.................................................................................................................................................TACGATTAATTAAAGAAGGAAGATTG..............................................................................................................................................................................26200.05100010
............................................................................................................................................TACTCTACGATTAATTAAAGAAGGAAG..................................................................................................................................................................................27200.05101000
..........................................................................................................................................................................................................TACT-GGAGTATGATGGCAAATTG.......................................................................................................................23200.05101000
................................................................................................................................................................................................AAAAGAAGCCTACT-GGAGTATGATGG..............................................................................................................................26200.05101000
.....................................................................................................................................................................................................AAGCCTACT-GGAGTATGATGG..............................................................................................................................21200.05100001
................................................................................................................................................CTACGATTAATTAAAGAAGGAAGA.................................................................................................................................................................................24200.05101000
................................................................................................................................................CTACGATTAATTAAAGAAGGAA...................................................................................................................................................................................22200.05100010
.............................................................................................................................................ACTCTACGATTAATTAAAGAAGGAAGA.................................................................................................................................................................................27200.05101000
................................................................................................................................................CTACGATTAATTAAAGAAGGAAGATT...............................................................................................................................................................................26200.05101000
.......................................................................................................................................................TAATTAAAGAAGGAAGATTGA------------------TTAAAAG....................................................................................................................................................28200.05101000
.............................................................................................................................................................................................................T-GGAGTATGATGGCAAATTGACATT..................................................................................................................25200.05100010
....................................................................................................................................................GATTAATTAAAGAAGGAAGATT...............................................................................................................................................................................22200.05100010
.........................................................................................................................................................................TGA------------------TTAAAAGAAGCCTACT-GGAGTAT...................................................................................................................................26200.05101000
...................................................................................................................................................................................................AGAAGCCTACT-GGAGTATGATGGC.............................................................................................................................24200.05100010
.................................................................................................................................................................................................................AGTATGATGGCAAATTGACA....................................................................................................................20200.05100001
.......................................................................................................................................................................................................GCCTACT-GGAGTATGATGGC.............................................................................................................................20200.05101000
droVir3
TAGTC--------------------------------------------TAGTAGGAATAAAGAAATTTAATTGGCTAAACAATATAGAAGATTCAATTTCACCAGTAATTATTTTATGAATAAATATTATACCTAACATGGTTCTACGAATT------------------------------------------AGAAGTCTGCT-GGAGTATGACGGTACCCACACGCAAGGATCCC-AATTTAAGCCACGGAGGGCAAACAACAA---TTATTGTTTCTGAACCGAT--TCAATTCTGTCCTGGT-------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................................................................................................TAACATGGTTCTACGAATT------------------------------------------AGAAGTC...............................................................................................................................................2611.001000000000000000000000000010000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................TCTGAACCGAT--TCAATTCTGTCC.........................................2311.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................ACCCACACGCAAGGATCCC-AAC......................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000001
..........................................................................................................................................................................................................................................................ACGGAGGGCAAACAACAA---TTATTGTT..................................................................2611.001000000000000000000000000000100000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................TGTTTCTGAACCGAT--TCAATTCTGTC..........................................2611.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................TGTTTCTGAACCGAT--TCAATTCTGTCC.........................................2711.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................AGGATCCC-AATTTAAGCCACGGAGGGC......................................................................................2711.001000000000000000000000000000000000001000000000000000000000000000
............................................................................................................................................GGTTCTACGAATT------------------------------------------AGAAGTCTGCT-GG........................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................TCACCAGTAATTATTTTATGAATAAATA..........................................................................................................................................................................................................................2820.501001000000000000000000000000000000000000000000000000000000000000
...................................................................................................TCACCAGTAATTATTTTATGAATA..............................................................................................................................................................................................................................2420.501001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................TCTGAACCGAT--TCAATTCTGT...........................................2120.501000000000000000000000000100000000000000000000000000000000000000
........................................................................................................................................................T------------------------------------------AGAAGTCTGCT-GGAGTATGACGG..............................................................................................................................2460.171000010000000000000000000000000000000000000000000000000000000000
droMoj3
TAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------GATGGCAGATCAA------------------TTAGCTGGAGCCTACT-ATGATAAGACGGTAATCTTAAATTACTGTCCC-ATCTAAGGTCTCTTAAGGCAAAGAGAAG---AAACTGTTTTTGGACCGAT--TCGATACGATCCTGATACAGTTTATGTTGCGGAGACCATACGGCAGA------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................................................................................................................................................................................................................................................................................................T--TCGATACGATCCTGATACAGTTTATG...........................272069.00138010650003069
.................................................................................................................................................................................................................................................................................................T--TCGATACGATCCTGATACAGTTTATGT..........................282019.7039439400000
..............................................................................................................................................................................................................................................................................................CGAT--TCGATACGATCCTGATACAGT................................25201.20242400000
...............................................................................................................................................................................................................................CTTAAATTACTGTCCC-ATCTAAGGTC...............................................................................................2611.001000010
..............................................................................................................................................................................................................................TCTTAAATTACTGTCCC-ATCTAAGGTC...............................................................................................2711.001100000
.....................................................................................................................................................................................................................................................................................................CGATACGATCCTGATACAGTTTATG...........................25200.60121200000
..........................................................................................................................................................................................................................................................TCTTAAGGCAAAGAGAAG---AAACTGTT..................................................................26200.60121200000
.................................................................................................................................................................................................................................................................................................T--TCGATACGATCCTGATACAGT................................22200.50101000000
..............................................................................................................................................................................................................................................................................................CGAT--TCGATACGATCCTGATACAGTT...............................26200.459000090
....................................................................................................................................................................................................................................................................................................TCGATACGATCCTGATACAGTTT..............................23200.357700000
....................................................................................................................................................................................................................................................................................................TCGATACGATCCTGATACAGTTTATGTT.........................28200.204400000
.....................................................................................................................................................................................................................................................................................................CGATACGATCCTGATACAGTTTATGT..........................26200.204400000
.................................................................................................................................................................................................................................................................................................T--TCGATACGATCCTGATA....................................18200.204400000
.............................................................................................................................................................................................................................................................................................CCGAT--TCGATACGATCCTGATACAGT................................26200.204000040
..........................................................................................................................................................................................................................................................TCTTAAGGCAAAGAGAAG---AAACTGT...................................................................25200.204000040
....................................................................................................................................................................................................................................................................AAGAGAAG---AAACTGTTTTTGGACCG.........................................................25200.204400000
......................................................................................................................................................................................................................................TACTGTCCC-ATCTAAGGTC...............................................................................................19200.204400000
....................................................................................................................................................................................................................................................................................................TCGATACGATCCTGATACAGT................................21200.153210000
......................................................................................................................................................................................................................................TACTGTCCC-ATCTAAGGTCTCTTA..........................................................................................24200.153300000
.................................................................................................................................................................................................................................................................................................T--TCGATACGATCCTGATAC...................................19200.153000030
....................................................................................................................................................................................................................................................................................................TCGATACGATCCTGATACAGTTTATG...........................26200.153030000
..............................................................................................................................................................................................................................................................................................CGAT--TCGATACGATCCTGATACAGTC...............................26200.102000020
...................................................................................................................................................................................................................................................................................................................TACAGTTTATGTTGCGGAGAC.................21200.102000002
..........................................................................................................................................................................AA------------------TTAGCTGGAGCCTACT-ATGATA....................................................................................................................................24200.102200000
.........................................................................................................................................................................................................................................................................................................ACGATCCTGATACAGTTTATG...........................21200.102000020
............................................................................................................................................................................................................................................................................................................ATCCTGATACAGTTTATGTTGCGG.....................24200.051100000
..........................................................................................................................................................................................................................................................................AG---AAACTGTTTTTGGACCGAT--.....................................................21200.051100000
.................................................................................................................................................................................................................................................................................................T--TCGATACGATCCTGATACAGTTTATGGC.........................29200.051100000
........................................................................................................................................................................................................................................................................................................TACGATCCTGATACAGTTTATG...........................22200.051100000
.........................................................................................................................................................................CAA------------------TTAGCTGGAGCCTACT-ATGATATA..................................................................................................................................27200.051000010
...............................................................................................................................................................................................TAGCTGGAGCCTACT-ATGATAAGACGT..............................................................................................................................27200.051100000
......................................................................................................................................................................................................................................................................................................GATACGATCCTGATACAGTTTATG...........................24200.051000010
....................................................................................................................................................................................................................................................................AAGAGAAG---AAACTGTTTTTGG.............................................................21200.051100000
......................................................................................................................................................................................................................................TACTGTCCC-ATCTAAGGT................................................................................................18200.051100000
...................................................................................................................................................................................................................................................................................................................TACAGTTTATGTTGCGGAGACCATAC............26200.051100000
.............................................................................................................................................................................................................................................................TAAGGCAAAGAGAAG---AAACTGTTT.................................................................24200.051100000
........................................................................................................................................................................................................................................................................................................TACGATCCTGATACAGTTTATGT..........................23200.051000010
.................................................................................................................................................................................................................................TAAATTACTGTCCC-ATCTAAGGTC...............................................................................................24200.051100000
........................................................................................................................................................................................................................................................................................TTGGACCGAT--TCGATACGATCCTG.......................................24200.051100000
...........................................................................................................................................................................................................................................................................................GACCGAT--TCGATACGATCCTGATACA..................................26200.051100000
...................................................................................................................................................................................................................................................................................................................TACAGTTTATGTTGCGGAGACCAT..............24200.051100000
....................................................................................................................................................................................................................................................................................................................ACAGTTTATGTTGCGGAGACCATA.............24200.051100000
............................................................................................................................................................................................................................................................................................ACCGAT--TCGATACGATCCTGATACAGTTT..............................29200.051100000
...........................................................................................................................................................................................................................................................................................................GATCCTGATACAGTTTATG...........................19200.051100000
.....................................................................................................................................................................................................................................................................AGAGAAG---AAACTGTTTTTGGACC..........................................................23200.051000010
.......................................................................................................................................................................ATCAA------------------TTAGCTGGAGCCTACT-ATGA......................................................................................................................................25200.051100000
...........................................................................................................................................................................A------------------TTAGCTGGAGCCTACT-ATGATAAGAC................................................................................................................................27200.051100000
...............................................................................................................................................................................................TAGCTGGAGCCTACT-ATGATAAGACGGT.............................................................................................................................28200.051000010
.................................................................................................................................................................................................................................................................GCAAAGAGAAG---AAACTGTTTTTGGACC..........................................................27200.051100000
.....................................................................................................................................................................................................................................................................................................CGATACGATCCTGATACAGTTT..............................22200.051100000
.......................................................................................................................................................................................................................................................................AGAAG---AAACTGTTTTTGGACC..........................................................21200.051100000
.....................................................................................................................................................................................................................................TTACTGTCCC-ATCTAAGGTC...............................................................................................20200.051100000
...................................................................................................................................................................................................................................................................AAAGAGAAG---AAACTGTTTTTGGACCGAA--.....................................................28200.051100000
..............................................................................................................................................................................................TTAGCTGGAGCCTACT-ATGATAAGACGT..............................................................................................................................28200.051100000
...............................................................................................................................................................................................................................................................................................GAT--TCGATACGATCCTGATACAGTT...............................25200.051000010
....................................................................................................................................................................................................................................................................................................TCGATACGATCCTGATACAGTTTAT............................25200.051000010
..................................................................................................................................................................................................................................................................................................................ATACAGTTTATGTTGCGGAGACCATA.............26200.051000001
droGri2
ACGAAAGAAACCCGGATGT-GGTCCCCGAAATTATTGATTTCGATGATCAAGT----------------------------------------------------------------------------------------------------------------AAGTTA-------------------ACATAGATAAGTTGTT-TCAA---------------------------------------------------------------------------TAAT--TTTATC-----------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
ATTAA--------------------------------------------------------------------------------------------------------TTAGATTATATAGAAAAACGACACCCAGCATCGTTCTACGGTTTGTTAATGAAGGTAAGTTCA------------------GTTAAAAAAGTCACTATGTGTTAAGAGGGAAGGTGAAGATTTGCATCCC-AATTAAGTTCTCTAAGGGCGAAAATGAG---GTGCTTTTTTTGTACAGATCGTGATTTCGGTC-------------------------CGTATTGAGAA------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................................................................................................................................................................................................AAGAGGGAAGGTGAAGATTTGCATCC...........................................................................................................26120.081010000
......................................................................................................................................................................................................................GAGGGAAGGTGAAGATTTGCATCC...........................................................................................................24160.061010000
droBip1
ATTAA--------------------------------------------------------------------------------------------------------TTAGGCTATGTAGAAAAACTACACCGAGCATTGTCCTACAATTTGTTAAGCGAGGTAAGTTTA------------------TAAGTAAGAGTATTTT-ATTATAAAATGGAAGGTGAAGATGTGCATCCC-AGTTTAGACCTCTAATAGAAAAAATTAC---GAAATTCTTTTGCACGG--------------------------------GGGGACTCTAGACACATGA------SizeHit CountTotal NormTotal
No Reads
droKik1
TAGCT-----------------------------------------------------------------------------------------------------------------------------------------------------------ATGGAG-GGTAAGTTAACGAAGTTAAGTAAGTTATAGAAGTCTACT-AC----------------------AGCATCCC-AGGGTAGGCTACGGAGGGCGAAAAATAA---AATATTCTTTTGTACAGAT--TCAATAT-----------------------GGACTCCAAATTGAGGA------SizeHit CountTotal NormTotal
No Reads
droFic1
ACGAAAAGAATCCGGATGT-TGTCCCAGAATCGGTTGAAGCTGATGAACAGGT------------------------------------------------------------------------------------------------------------------------------------------AATTAGATA-----------------------------------------------------------------------------TTTATAAATATAT--TTAGG--------------------------------------AGAA------SizeHit CountTotal NormTotal
No Reads
droEle1
GC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTCTATC-CAACTAAGATGGTAGGTGACGATGGGTATCCC-AGTTTAAACCACGTAGAGCAAACAAAAA---GAACTGTTTCTGTTCCGAT--TTTATAAGATCCTGATAATTGGTATATTTGAGAGACCAAACACACGA------SizeHit CountTotal NormTotal
No Reads
droRho1
ATTAA-----------------------------------------------------------------------------------------------------------GTTTATAAATAAAAATTGTGCCAAGCATCGTTCTACGGTTTAATAAAGATGGTAGATTAA------------------TTAGGAGAAGTCTACT-AGAGAAGGATGGTAAAATAAGGCTTGCATTCC-AGTTAAGGCCCCGTAAAGCAAATAATTA---AAAGTTATTTTGCACAGAC--TCTATCCGGTCTATATGTACACCATACTGAGGACTCCAAACTGCTGA------SizeHit CountTotal NormTotal
No Reads
droBia1
TTTATAATATT-------------------------------------------------------------------------------------------------------------ATAAAAATAGTATCAAGCATTGTTCTACGATTTACAAGTGTAGGTA-ATTAA------------------GCAATTGTAATTTACT-CCGGTAGGAAGGTAGCCTTACGTTTTGATCCC-AGTTCAAACGACGCAGTGCAAATAAAA----GACATTTTTTCGTACTGAC--TCAATACGGTCAATGTGCACTA------------------CAATACA------SizeHit CountTotal NormTotal
No Reads
droTak1
TATGC-------------------------------------------------------------------------------------------------------------------ATAAAAATAGTACCGAGCATTATTCTACGATTTGCAAGTGTTGGTAAATTAT------------------GCAATAATAATCTACA-TTGGTAGGAAGGTAGCATTACGTTTTGATCCC-AGTTCAAACTACGAAGAGCAAAAAGAAG---GAATTTTTCTTGTACCGAC--TTTATACGGTGAATGTGCACTTGGTATTGTGGGCTCCAAACCGAAGA------SizeHit CountTotal NormTotal
No Reads
droEug1
CACTA-------------------------------------------------------------------------------------------------------ATAAGATTGTTAATAAA-----------------------------------AAGGTAAGTTTA------------------TTA-GAATAGTCTGCT-TTTATAGGAGGGAAGATGTAAGTTTGCATCCC-AATTTTGGCCGCGAAGAGCAAATAAGAG---AAAGCTTTTTTGAATTGAT--TCTATACGGTCTTGGTGGACCGCGTACTGGGGGTTCCAGACGCAAGA------SizeHit CountTotal NormTotal
No Reads
dm3
GA---------------------------------------------------------------------------------------------------------------------------------------------------------------CGGTAAATTAA------------------ATTAACGTAGTGTACT-GGAATAAGGAGGTAATATACGGTTTGCATCCC-ACTTTAGGCGCCGCA-AGCAAAACGTAA---TAAGTTTTTTTGGACCGAT--TCAATGCGGTCCGAGTGGACTGCGTATTGTGGACTCCAAACAGGTGATAGTGASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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.....................................................................................................................................................................................................................................................................................................................GACTGCGTATTGTGGACTCCAAA.............23200.2550000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................CCGAGTGGACTGCGTATTGTG......................21200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000100000000000000
...........................................................................................................................................................................................................................................................................................................................GTATTGTGGACTCCAAACAGG.........21200.2550000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000200000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................TATTGTGGACTCCAAACAGGTGAT.....24200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000120000000
....................................................................................................................................................................................................................................................................................................TCAATGCGGTCCGAGTGGA..................................19200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000002000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................AGTTTTTTTGGACCGAT--TCAATGCGG............................................26200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000211100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................GTGGACTGCGTATTGTGGACTCC................23200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................CGAGTGGACTGCGTATTGTGGACTCC................26200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................GGAATAAGGAGGTAATATACG.....................................................................................................................21200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000001000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................ACTGCGTATTGTGGACTCCAAACAGGTGA......29200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................GTATTGTGGACTCCAAACAGGTGA......24200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................GAGTGGACTGCGTATTGTGGA....................21200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000100000000000000000000001000000000000000000000000000001000
.........................................................................................................................................................................................................................GGTAATATACGGTTTGCAT.............................................................................................................19200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................TACT-GGAATAAGGAGGTAATATA.......................................................................................................................23200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000001000000010000000000000000000000000
.....................................................................................................................................................................................................................................................................................TTTTTGGACCGAT--TCAATGCGG............................................22200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010002001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................CCGAT--TCAATGCGGTCCGAGTGGAC.................................25200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................CGTATTGTGGACTCCAAACAGGTGA......25200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000100000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................TTGTGGACTCCAAACAGGT........19200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................GTCCGAGTGGACTGCGTATTGTGGA....................25200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................GAT--TCAATGCGGTCCGAGTGGACT................................24200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000002000000001000000000000000000000000
..................................................................................................................................................................................................................ATAAGGAGGTAATATACGGTTTGCA..............................................................................................................25200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000001000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
......................................................................................................................................................................................................................................................................................................................ACTGCGTATTGTGGACTCCAAACA...........24200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................GAGTGGACTGCGTATTGTGGACTCCA...............26200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................TTGTGGACTCCAAACAGGTGAT.....22200.2040000000000000000000001000000000000000001000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................TGGACTCCAAACAGGTGAT.....19200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................ATAAGGAGGTAATATACGGTTTGCAT.............................................................................................................26200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000001000000
................................................................................................................................................................................................................................................................................................................GAGTGGACTGCGTATTGTGGACTCCAAA.............28200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................ATTGTGGACTCCAAACAGGTGT......22200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000100000000000
...................................................................................................................................................................................................................................................................................................................TGGACTGCGTATTGTGGACTCCAAACAG..........28200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000100000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................GTCCGAGTGGACTGCGTATTGTGG.....................24200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................TGGACTGCGTATTGTGGT....................18200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................CGTATTGTGGACTCCAAACAG..........21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................AGTTTTTTTGGACCGAT--TCAA.................................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................TGGACTGCGTATTGTGGACT..................20200.1530000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...........................................................................................................................................................................................................ACT-GGAATAAGGAGGTAATATACGG....................................................................................................................25200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
...............................................................................................................................................................................................................................................................................................................CGAGTGGACTGCGTATTGTGGACT..................24200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................GGAATAAGGAGGTAATATACGGTT..................................................................................................................24200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................TAAGGAGGTAATATACGG....................................................................................................................18200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................GAT--TCAATGCGGTCCGAGTGGACTG...............................25200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
........................................................................................................................................................................................................................AGGTAATATACGGTTTGCATCC...........................................................................................................22200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................CTGCGTATTGTGGACTCCAAA.............21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000010
.............................................................................................................................................................................................................................................................................................................TCCGAGTGGACTGCGTATTGTGG.....................23200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.............................................................................................................................................................................................................................................................................................CCGAT--TCAATGCGGTCCGAGTGGACT................................26200.1530000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................TGCGGTCCGAGTGGACTGCGTATTG........................25200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................GTCCGAGTGGACTGCGTATTG........................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000100000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................T--TCAATGCGGTCCGAGTGGACTGCG.............................25200.1530000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................AAGTTTTTTTGGACCGAT--TCA..................................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................GTATTGTGGACTCCAAACAGGTG.......23200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................TCAATGCGGTCCGAGTGGAA.................................20200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................TTTTTTGGACCGAT--TCAATGCG.............................................22200.1530000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................ACT-GGAATAAGGAGGTAATAT........................................................................................................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002001000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................TTTTTTTGGACCGAT--TCAATGCG.............................................23200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................GTGGACTGCGTATTGTGGACTCCAAAC............27200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.................................................................................................................................................................................................................................................................................AGTTTTTTTGGACCGAT--TCA..................................................20200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
droSim2
GTG-------------------------------------------------------------------------------------------------------------------------------------------------------------ACGGTAAATTAA------------------ATAAAAGTAGTCTACT-GGAATAAGAAGGTAATATACGGCTTGCATCCC-AATTTAGGCGCCGCAAGGCAAAAAGTAA---AAAGTTTTTTTAGACCGAT--TCAATGCGGTCCGAGTGGACTGCGTATTGTGGACTCCAAACAGGTGA------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................................................................................................................................................................................................................................................................................................................TGCGTATTGTGGACTCCAAACAGGTGA------272015.75315000000001390001760000
....................................................................................................................................................................................................................................................TAGGCGCCGCAAGGCAAAA..................................................................................19205.251050000105000000000000
...........................................................................................................................................................................................................................................TCCC-AATTTAGGCGCCGCAAGGCAAAA..................................................................................27204.2084000000000822000000
..................................................................................................................................................................................................AAGTAGTCTACT-GGAATAAGAAGGTA............................................................................................................................2643.7515000040000011000000
..................................................................................................................................................................................................AAGTAGTCTACT-GGAATAAGAAGG..............................................................................................................................2443.7515000020000013000000
..................................................................................................................................................................................................AAGTAGTCTACT-GGAATA....................................................................................................................................18203.4068000000000068000000
.............................................................................................................................................................................................................................................................................................................TCCGAGTGGACTGCGTATTGTGGACTC.................27203.10620000000035027000000
..........................................................................................................................................................................................................TACT-GGAATAAGAAGGTAATATACGGC...................................................................................................................2733.00900000004050000000
.......................................................................................................................................................................................................................................TGCATCCC-AATTTAGGCGCCGCA..........................................................................................23202.8056000000000560000000
..................................................................................................................................................................................................AAGTAGTCTACT-GGAATAAGAAGGTAA...........................................................................................................................2742.7511000000000011000000
..........................................................................................................................................................................................................TACT-GGAATAAGAAGGTAATATACGGCT..................................................................................................................2832.67800000005030000000
..................................................................................................................................................................................................AAGTAGTCTACT-GGAATAAGAAGGT.............................................................................................................................2542.501000004000006000000
..................................................................................................................................................................................................................................................................................................................GTGGACTGCGTATTGTGGACT..................21202.45490000003712000000000
.......................................................................................................................................................................................................................................TGCATCCC-AATTTAGGCGCCGCAAGGCAAAA..................................................................................31202.25450000004193190000000
.............................................................................................................................................................................................................................................................................................................TCCGAGTGGACTGCGTATTGTGGA....................24202.1042000000802905000000
.............................................................................................................................................................................................................................................................................................................TCCGAGTGGACTGCGTATTGTGGACT..................26202.10420026100150000000000
.......................................................................................................................................................................................................................................TGCATCCC-AATTTAGGCGCCGCAAGGCAAA...................................................................................30201.6533000000300300000000
...............................................................................................................................................................................................TAAAAGTAGTCTACT-GGAATA....................................................................................................................................21201.3026000000002400002000
......................................................................................................................................................................................................................................TTGCATCCC-AATTTAGGCGCCGCAAGG.......................................................................................27201.2525000000025000000000
..................................................................................................................................................................................................AAGTAGTCTACT-GGAAT.....................................................................................................................................17201.2024000000000024000000
.............................................................................................................................................................................................................................................................................................................TCCGAGTGGACTGCGTATTG........................20201.0521002000000010180000
................................................................................................................................................................................................................................TACGGCTTGCATCCC-AATTTAGGCGC..............................................................................................2631.00300020000001000000
...................................................................................................................................................................................................................................................................................................................TGGACTGCGTATTGTGGACTCCAAA.............25200.9018000000000180000000
.............................................................................................................................................................................................................................................................................................................TCCGAGTGGACTGCGTATTGTGGTA...................25200.8517000000100700000000
..................................................................................................................................................................................................................................................TTTAGGCGCCGCAAGGCAAAAAG................................................................................23200.8016000000000016000000
.............................................................................................................................................................................................................................................................................................................TCCGAGTGGACTGCGTATTGTG......................22200.8016000000000040120000
...............................................................................................................................................................................................TAAAAGTAGTCTACT-GGAATAAGAAGG..............................................................................................................................2740.75300000001200000000
..............................................................................................................................................................................................................................................................................................................................TTGTGGACTCCAAACAGGTGA------21200.7515000000000000015000
..........................................................................................................................................................................................................................................ATCCC-AATTTAGGCGCCGCAAGGCAAAA..................................................................................28200.7515000000010050000000
..........................................................................................................................................................................................................TACT-GGAATAAGAAGGTAATATACGG....................................................................................................................2640.75300000000030000000
...............................................................................................................................................................................................TAAAAGTAGTCTACT-GGAA......................................................................................................................................19200.7014000000000140000000
.............................................................................................................................................................................................................T-GGAATAAGAAGGTAATATACGGCT..................................................................................................................2530.67200000000011000000
.........................................................................................................................................................................................................................................................................................TAGACCGAT--TCAATGCGGTCCGAGTGGA..................................2830.67200000001001000000
.....................................................................................................................................................................................................................................................................................................................GACTGCGTATTGTGGACTCCAAACA...........25200.6012000000000120000000
...............................................................................................................................................................................................TAAAAGTAGTCTACT-GGAATAAG..................................................................................................................................23200.6012000000011010000000
.............................................................................................................................................................................................................................................................................................................TCCGAGTGGACTGCGTATTGTGGAAA..................26200.6012000000000000120000
..................................................................................................................................................................................................AAGTAGTCTACT-GGAATAAA..................................................................................................................................20200.5511000000000011000000
...........................................................................................................................................................................................................................................TCCC-AATTTAGGCGCCGCAAGGCAAAAA.................................................................................28200.551100000008300000000
..................................................................................................................................................................................................AAGTAGTCTACT-GGAA......................................................................................................................................16200.551100000002009000000
........................................................................................................................................................................TTAA------------------ATAAAAGTAGTCTACT-GGA.......................................................................................................................................2340.50200000000200000000
..................................................................................................................................................................................................AAGTAGTCTACT-GGAATAAGA.................................................................................................................................2140.50200000000002000000
............................................................................................................................................................................................................................................................................................................................TATTGTGGACTCCAAACAGGTGA------23200.5010000000000000010000
.................................................................................................................................................................................................AAAGTAGTCTACT-GGAATAAGAAGG..............................................................................................................................2540.50200000000002000000
.....................................................................................................................................................................................................TAGTCTACT-GGAATAAGAAGGT.............................................................................................................................2240.50200002000000000000
.........................................................................................................................................................................TAA------------------ATAAAAGTAGTCTACT-GGAAT.....................................................................................................................................2440.50200000200000000000
..................................................................................................................................................................................................AAGTAGTCTACT-GGAATAAGAAGGTAAT..........................................................................................................................2840.50200000000002000000
.............................................................................................................................................................................................................................................................................................................TCCGAGTGGACTGCGTATTGTGGACTCC................28200.45900000006003000000
...........................................................................................................................................................................................................................................................................................................................GTATTGTGGACTCCAAACAGGTGA------24200.40800000005020001000
.........................................................................................................................................................................................................................................................................................................................GCGTATTGTGGACTCCAAACAGGTGA------26200.40800000005300000000
..................................................................................................................................................................................................AAGTAGTCTACT-GGAAA.....................................................................................................................................17200.40800000000008000000
........................................................................................................................................................................................................................................................................................................................TGCGTATTGTGGACTCCAAACAGGTG.......26200.40800000020000060000
........................................................................................................................................................................................................................................................................................................................TGCGTATTGTGGACTCCAAACAGGT........25200.35700000000700000000
......................................................................................................................................................................................................................................................................................................AATGCGGTCCGAGTGGACTGCGT............................23200.35700000000007000000
.TG-------------------------------------------------------------------------------------------------------------------------------------------------------------ACGGTAAATTAA------------------ATAAAAGTAGTCT..............................................................................................................................................2730.33100000000010000000
.TG-------------------------------------------------------------------------------------------------------------------------------------------------------------ACGGTAAATTAA------------------ATAAAAGTAGT................................................................................................................................................2530.33100000000010000000
.........................................................................................................................................................................................................................................................................................TAGACCGAT--TCAATGCGGTCCGAGTGG...................................2730.33100000000001000000
.........................................................................................................................................................................................................................................................................................TAGACCGAT--TCAATGCGGTCCGAGTGGAC.................................2930.33100000000001000000
...............................................................................................................................................................................................................................................................................AAAGTTTTTTTAGACCGAT--TCAATGCGG............................................2830.33100000010000000000
............................................................................................................................................................................................................................AATATACGGCTTGCATC............................................................................................................1730.33100000000001000000
.........................................................................................................................................................................................................CTACT-GGAATAAGAAGGTAATATACGGC...................................................................................................................2830.33100000001000000000
.............................................................................................................................................................................................................T-GGAATAAGAAGGTAATATACGGC...................................................................................................................2430.33100000000010000000
.........................................................................................................................................................................................................................................................................TAA---AAAGTTTTTTTAGACCGAT--TCAA.................................................2630.33100000000000010000
......................................................................................................................................................................................................................................................................................TTTTAGACCGAT--TCAATGCGGTCCGAG......................................2730.33100000000001000000
.......................................................................................................................................................................................................................AAGGTAATATACGGCTTGCATC............................................................................................................2230.33100010000000000000
....................................................................................................................................................................................................................................................................................TTTTTTAGACCGAT--TCAATGCG.............................................2230.33100000001000000000
...................................................................................................................................................................................................................................................TTAGGCGCCGCAAGGCAAAAAGTAA---AA........................................................................27130.31400000003100000000
................................................................................................................................................................................................................................................................................................AT--TCAATGCGGTCCGAGTGGA..................................21200.30600000011004000000
..........................................................................................................................................................................................................................................................................................................CGGTCCGAGTGGACTGCGTATTGTGGAC...................28200.30600000021003000000
..................................................................................................................................................................................................................................................................................................................GTGGACTGCGTATTGTGGACTCCAAAC............27200.30600000000060000000
...............................................................................................................................................................................................TAAAAGTAGTCTACT-GGAATAAA..................................................................................................................................23200.25500000000320000000
.................................................................................................................................................................................................AAAGTAGTCTACT-GGAATAAGA.................................................................................................................................2240.25100000000001000000
......................................................................................................................................................................................................AGTCTACT-GGAATAAGA.................................................................................................................................1740.25100000000001000000
..........................................................................................................................................................................................................TACT-GGAATAAGAAGGTAATATA.......................................................................................................................2340.25100000001000000000
....................................................................................................................................................................................................GTAGTCTACT-GGAATAAGAAGGTAATA.........................................................................................................................2740.25100000000100000000
..................................................................................................................................................................................................AAGTAGTCTACT-GGAATAAGAAG...............................................................................................................................2340.25100000000001000000
.......................................................................................................................................................................................................GTCTACT-GGAATAAGAAGGTAA...........................................................................................................................2240.25100000000001000000
...............................................................................................................................................................................................TAAAAGTAGTCTACT-GGAATAAGA.................................................................................................................................2440.25100000001000000000
....................................................................................................................................................................TAAATTAA------------------ATAAAAGTAGTCTACT-GGA.......................................................................................................................................2740.25100000000010000000
.........................................................................................................................................................................TAA------------------ATAAAAGTAGTCTACT-GGAA......................................................................................................................................2340.25100000000010000000
.............................................................................................................................................................................................................................................................................................................TCCGAGTGGACTGCGTATTAA.......................21200.25500000000000050000
........................................................................................................................................................................................................................................GCATCCC-AATTTAGGCGCCGCAAGGCAAAA..................................................................................30200.25500000000050000000
.................................................................................................................................................................................................................AATAAGAAGGTAATATAC......................................................................................................................1840.25100000000001000000
.....................................................................................................................................................................................................TAGTCTACT-GGAATAAGAAGG..............................................................................................................................2140.25100000010000000000
......................................................................................................................................................................................................AGTCTACT-GGAATAAGAAGGTAA...........................................................................................................................2340.25100000000001000000
......................................................................................................................................................................................................................................TTGCATCCC-AATTTAGGCGCCGCAAGA.......................................................................................27200.25500000003020000000
.............................................................................................................................................................................................................................................................................................................TCCGAGTGGACTGCGTATTGTGGAC...................25200.25500030000000101000
.......................................................................................................................................................................................................GTCTACT-GGAATAAGAAGG..............................................................................................................................1940.25100000000001000000
..............................................................................................................................................................................................ATAAAAGTAGTCTACT-GGAATAAA..................................................................................................................................2440.25100000000001000000
..................................................................................................................................................................................................AAGTAGTCTACT-GGAATAAGAA................................................................................................................................2240.25100000000001000000
...............................................................................................................................................................................................TAAAAGTAGTCTACT-GGAATAAGAA................................................................................................................................2540.25100000001000000000
........................................................................................................................................................................TTAA------------------ATAAAAGTAGTCTACT-GGAA......................................................................................................................................2440.25100000000001000000
......................................................................................................................................................................................................AGTCTACT-GGAATAAGAAGG..............................................................................................................................2040.25100000000001000000
...................................................................................................................................................................................................AGTAGTCTACT-GGAATAAGA.................................................................................................................................2040.25100000001000000000
.....................................................................................................................................................................................................TAGTCTACT-GGAATAAGAAGGTA............................................................................................................................2340.25100000000001000000
........................................................................................................................................................................................................TCTACT-GGAATAAGAAGGTA............................................................................................................................2050.20100000000001000000
.................................................................................................................................................................................................AAAGTAGTCTACT-GGA.......................................................................................................................................16200.20400000000004000000
..................................................................................................................................................................................................................................................................................................................GTGGACTGCGTATTGTGG.....................18200.20400000040000000000
...............................................................................................................................................................................................................................................................................................................CGAGTGGACTGCGTATTGTGG.....................21200.20410000000300000000
...................................................................................................................................................................................................................................................TTAGGCGCCGCAAGGCAAAAAGT...............................................................................23200.20400000000004000000
.............................................................................................................................................................................................................................................................................................................TCCGAGTGGACTGCGTATTGTGGTT...................25200.20400000000400000000
............................................................................................................................................................................................................................................................................................................................TATTGTGGACTCCAAACAG..........19200.20400000004000000000
..........................................................................................................................................................................................................TACT-GGAATAAGAAGGTAATATACGGA...................................................................................................................2750.20100000010000000000
.............................................................................................................................................................................................................................................................................................................TCCGAGTGGACTGCGTA...........................17200.20400000000004000000
..................................................................................................................................................................................................AAGTAGTCTACT-GGAATAAGAG................................................................................................................................2260.17100000100000000000
..................................................................................................................................................................................................................................................................................................................GTGGACTGCGTATTGTGGAC...................20200.15300000030000000000
...............................................................................................................................................................................................................................................................................................................................TGTGGACTCCAAACAGGT........18200.15300000000012000000
...................................................................................................................................................................................................................................................................................................................TGGACTGCGTATTGTGGACTCCAAAC............26200.15300000003000000000
.......................................................................................................................................................................................................................................TGCATCCC-AATTTAGGCGCCGCAAGG.......................................................................................26200.15300000000300000000
..................................................................................................................................................................................................................................................................................................................GTGGACTGCGTATTGTGGACTCCA...............24200.15300000010002000000
.............................................................................................................................................................................................................................................................................................................TCCGAGTGGACTGCGTATTGTGGTAA..................26200.15300000000300000000
..........................................................................................................................................................................................................................................................................................................................CGTATTGTGGACTCCAAACAGGTGA------25200.15300000000300000000
........................................................................................................................................................................................................................................................................................................TGCGGTCCGAGTGGACTGCGTA...........................22200.15300000000300000000
................................................................................................................................................................................................................................................................................................................GAGTGGACTGCGTATTGTGGACTCCAAA.............28200.15300000011001000000
.......................................................................................................................................................................................................................................................................................................................CTGCGTATTGTGGACTCCAAACAGG.........25200.15300000021000000000
.............................................................................................................................................................................................................................................................................................................TCCGAGTGGACTGCGT............................16200.15300000000003000000
................................................................................................................................................................................................................................................................................................................................GTGGACTCCAAACAGGTT.......18200.10200010010000000000
.....................................................................................................................................................................................................TAGTCTACT-GGAATA....................................................................................................................................15200.10200000000002000000
......................................................................................................................................................................................................................................................................................................AATGCGGTCCGAGTGGACTGC..............................21200.10200000000002000000
...............................................................................................................................................................................................................................................................................................................CGAGTGGACTGCGTATTGTGGAAA..................24200.10200000000200000000
......................................................................................................................................................................................................................................................................................................................ACTGCGTATTGTGGACTCCAAACA...........24200.10200000000200000000
.................................................................................................................................................................................................................................................................................................................AGTGGACTGCGTATTG........................16200.10200000000002000000
................................................................................................................................................................................................................................................................................................................................GTGGACTCCAAACAGGTGA------19200.10200000000020000000
...........................................................................................................................................................................................................................................................................................................................GTATTGTGGACTCCAAACAGG.........21200.10200000002000000000
....................................................................................................................................................................................................................................................................................................TCAATGCGGTCCGAGTGGAA.................................20200.10200000002000000000
...........................................................................................................................................................................................................................................TCCC-AATTTAGGCGCCGCAAGGCAAAAAG................................................................................29200.10200000000020000000
..............................................................................................................................................................................................................................................................................................................CCGAGTGGACTGCGTATT.........................18200.10200000000002000000
........................................................................................................................................................................................................................................................................................................................TGCGTATTGTGGACTCCAAACA...........22200.10200000000002000000
..............................................................................................................................................................................................................................................................................................................................TTGTGGACTCCAAACA...........16200.10200000000002000000
......................................................................................................................................................................................................................................TTGCATCCC-AATTTAGGCGCCGCA..........................................................................................24200.10200000002000000000
...............................................................................................................................................................................................................................................................................................................CGAGTGGACTGCGTATTGTGGACTC.................25200.10200000000002000000
...........................................................................................................................................................................................................................................TCCC-AATTTAGGCGCCGCAAGGCAA....................................................................................25200.10200000002000000000
..................................................................................................................................................................................................................................................................................................................GTGGACTGCGTATTGTGGACTCCAAA.............26200.10200000002000000000
.............................................................................................................................................................................................................................................................................................................TCCGAGTGGACTGCGTATTGTGA.....................23200.10200000000000020000
...............................................................................................................................................................................................................................................................................................................CGAGTGGACTGCGTATTGTGGACT..................24200.10200000000002000000
.................................................................................................................................................................................................................................................................................................T--TCAATGCGGTCCGAGTGGACTGCG.............................25200.10200000000002000000
....................................................................................................................................................................................................................................................TAGGCGCCGCAAGGCAAAAAGTAA---AAAG......................................................................28100.10100000001000000000
.............................................................................................................................................................................................................................................................................................................TCCGAGTGGACTGCGTATTGTGGTTA..................26200.10200000000200000000
...............................................................................................................................................................................................TAAAAGTAGTCTACT-GGA.......................................................................................................................................18200.10200000000002000000
..................................................................................................................................................................................................................................................TTTAGGCGCCGCAAGGCAAAAAGTAA---A.........................................................................27130.08100000000010000000
....................................................................................................................................................................................................................................................TAGGCGCCGCAAGGCAAAAAGTAA---AAA.......................................................................27130.08100000001000000000
....................................................................................................................................................................................................................................................TAGGCGCCGCAAGGCAAAAAGTAA---AAAA......................................................................28130.08100000001000000000
...................................................................................................................................................................................................................................................TTAGGCGCCGCAAGGCAAAAAGTAA---AAA.......................................................................28130.08100000000100000000
...........................................................................................................................................................................................................................................................CGCAAGGCAAAAAGTAA---AAAGT.....................................................................22140.07100000000100000000
...........................................................................................................................................................................................................................................TCCC-AATTTAGGCGCCGCAAGGCAAAAAGA...............................................................................30200.05100000001000000000
............................................................................................................................................................................................................................................................................................................GTCCGAGTGGACTGCGTATTGT.......................22200.05100000000000010000
.........................................................................................................................................................................................................................................CATCCC-AATTTAGGCGCCGCAAGGCAAAA..................................................................................29200.05100000000010000000
.......................................................................................................................................................................................................................................TGCATCCC-AATTTAGGCGC..............................................................................................19200.05100000000001000000
..................................................................................................................................................................................................................................................TTTAGGCGCCGCAAGGCAACT..................................................................................21200.05100000001000000000
.............................................................................................................................................................................................................................................................................................................TCCGAGTGGACTGCGTATTA........................20200.05100000000001000000
...................................................................................................................................................................................................................................................................................................................TGGACTGCGTATTGTGGACTCCAAACAG..........28200.05100000000010000000
.......................................................................................................................................................................................................................................TGCATCCC-AATTTAGGCGCCGCAAGGCAT....................................................................................29200.05100000001000000000
..............................................................................................................................................................................................................................................................................................................CCGAGTGGACTGCGTATTGTGGA....................23200.05100000000010000000
............................................................................................................................................................................................................................................................................................................................TATTGTGGACTCCAA..............15200.05100000001000000000
.................................................................................................................................................................................................................................................................................................T--TCAATGCGGTCCGAGTGGAC.................................21200.05100000001000000000
................................................................................................................................................................................................AAAAGTAGTCTACT-GGAATAAG..................................................................................................................................22200.05100000000100000000
.............................................................................................................................................................................................................................................................................................................TCCGAGTGGACTGCGTATTGTGGCA...................25200.05100000010000000000
.................................................................................................................................................................................................AAAGTAGTCTACT-GGAAT.....................................................................................................................................18200.05100000000001000000
.............................................................................................................................................................................................................................................................................................CCGAT--TCAATGCGGTCCGAGTGGACTGT..............................28200.05100000000010000000
...............................................................................................................................................................................................................................................................................................................CGAGTGGACTGCGTATTGTG......................20200.05100000010000000000
...............................................................................................................................................................................................................................................................................................................CGAGTGGACTGCGTATTGTGGACTCCAAA.............29200.05100000000010000000
...........................................................................................................................................................................................................................................................CGCAAGGCAAAAAGTA..............................................................................16200.05100000000001000000
..................................................................................................................................................................................................................................................................................................................GTGGACTGCGTATTGTGGACTCCAAACAG..........29200.05100000001000000000
.......................................................................................................................................................................................................................................TGCATCCC-AATTTAGGA................................................................................................17200.05100000001000000000
..............................................................................................................................................................................................................................................................................................................CCGAGTGGACTGCGTATTGTGGAAA..................25200.05100000000000010000
...................................................................................................................................................................................................................................................TTAGGCGCCGCAAGGCAAAAAGA...............................................................................23200.05100000000100000000
.............................................................................................................................................................................................................................................CC-AATTTAGGCGCCGCAAGGCAT....................................................................................23200.05100000000001000000
..................................................................................................................................................................................................................................................................................................................GTGGACTGCGTATTGTGGACTCCAAACAGG.........30200.05100000001000000000
......................................................................................................................................................................................................................................TTGCATCCC-AATTTAGGCGCCGCAAGGCAAAAA.................................................................................33200.05100000010000000000
.................................................................................................................................................................................................................................................................................................T--TCAATGCGGTCCGAGTGGACT................................22200.05100000001000000000
...............................................................................................................................................................................................TAAAAGTAGTCTACT-GGAATAAC..................................................................................................................................23200.05100000010000000000
........................................................................................................................................................................................................................................................................................................................TGCGTATTGTGGACTCCAAACAGGA........25200.05100000000000010000
......................................................................................................................................................................................................................................TTGCATCCC-AATTTAGGCGCCGCAAAA.......................................................................................27200.05100000000010000000
.................................................................................................................................................................................................................................................................................................................AGTGGACTGCGTATTGTGGACTCCAAA.............27200.05100000000100000000
................................................................................................................................................................................................................................................................................................................GAGTGGACTGCGTATTGTGGACTCCAA..............27200.05100000000100000000
droSec2
AA----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAA------------------TTAAACGTAGTCTACT-GGAATATGAAGGTAGTA-----TCCCAATCAC-AATTTAGGCGCCACAAGGCAAACAGTAA---GAAGTTTTATTGTACCGAT--TCAATTTGGTCCGAGTAAACTACATATTGAGGACTCCAAACTGGTGA------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.....................................................................................................................................................................................................TAGTCTACT-GGAATATGAAGGTAG...........................................................................................................................2413.0031011
......................................................................................................................................................................................................................................................................CAGTAA---GAAGTTTTATTGTACCGAT--.....................................................2513.0032100
......................................................................................................................................................................................................................................................................CAGTAA---GAAGTTTTATTGTACCGAT--T....................................................2612.0021001
......................................................................................................................................................................................................................................................................CAGTAA---GAAGTTTTATTGTACCGA........................................................2411.0011000
.................................................................................................................................................................................................AACGTAGTCTACT-GGAATATGAAGGT.............................................................................................................................2611.0010010
..................................................................................................................................................................................................ACGTAGTCTACT-GGAATATGAAGG..............................................................................................................................2411.0011000
......................................................................................................................................................................................................................................................................................................AATTTGGTCCGAGTAAACTACATA...........................2411.0010001
.......................................................................................................................................................................................................GTCTACT-GGAATATGAAGG..............................................................................................................................1911.0011000
..................................................................................................................................................................................................ACGTAGTCTACT-GGAATATGAAGGT.............................................................................................................................2511.0011000
....................................................................................................................................................................................................GTAGTCTACT-GGAATATGAAGGT.............................................................................................................................2311.0011000
.......................................................................................................................................................................................................GTCTACT-GGAATATGAAGGT.............................................................................................................................2011.0010010
..................................................................................................................................................................................................................................................................................GTTTTATTGTACCGAT--TCAATTTGG............................................2511.0011000
.......................................................................................................................................................................................................................................................................AGTAA---GAAGTTTTATTGTACCGA........................................................2311.0011000
.....................................................................................................................................................................................................TAGTCTACT-GGAATATGAAGGTA............................................................................................................................2311.0011000
....................................................................................................................................................................................................................................................................................................TCAATTTGGTCCGAGTAAACTACATATT.........................2811.0010010
.............................................................................................................................................................................................................................................................CAAGGCAAACAGTAA---GAAGT.....................................................................2030.3310100
droYak3
TAGC-------------------------------------------------------------------------------------------------------------------------------------------------------TAAGGAGGGTAAGTTAA------------------TTAACATGAGTCTACT-TGAATAAAGAGGTAATCTAAGGTTTGCATCCC-AATTAAGGCGCCGTAAGGCAAAAAGTAA---GAAGTTCTTTTGAACCGAT--TCAATTCGGTCCGAGTAAACTTCATATTGTGGACTCCAAACAGGTGA------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................................................................................................................................................................................................................................................................................................................CTTCATATTGTGGACTCCAAACAGG.........25203.4569067020000000
.......................................................................................................................................................................................................................................................................................................................CTTCATATTGTGGACTCCAAACAGA.........25201.0521020100000000
.......................................................................................................................................................................................................................................................................................................................CTTCATATTGTGGACTCCAAACAGGTGA------28201.0521000100000020
.........................................................................................................................................................................................................................................................................................................................TCATATTGTGGACTCCAAACAGGTGA------26200.8517010700000000
.......................................................................................................................................................................................................................................................................................................................CTTCATATTGTGGACTCCAAACAG..........24200.7515015000000000
...................................................................................................................................................................................................................................................................................................................TAAACTTCATATTGTGGACTCCAAACA...........27200.5010010000000000
......................................................................................................................................................................................................................................................................AAGTAA---GAAGTTCTTTTGAACCGAT--T....................................................26200.40804400000000
.............................................................................................................................................................................................................................................................TAAGGCAAAAAGTAA---GAAGTTCTTTT...............................................................26200.35700700000000
...........................................................................................................................................................................................................................TAATCTAAGGTTTGCATCCC-AATTAAGG.................................................................................................28200.30606000000000
........................................................................................................................................................................................................................................................................................................................TTCATATTGTGGACTCCAAACAGGTGA------27200.30600000000006
....................................................................................................................................................................................................................................................................................................................AAACTTCATATTGTGGACTCCAAACA...........26200.30606000000000
...................................................................................................................................................................................................................................................................................................................TAAACTTCATATTGTGGACTCCAAACAGG.........29200.25500500000000
TAGC-------------------------------------------------------------------------------------------------------------------------------------------------------TAAGGAGGGTAAGTTAA------------------TTAACAT....................................................................................................................................................28200.25504100000000
.......................................................................................................................................................................................................................................TGCATCCC-AATTAAGGCGCCGTAAGGC......................................................................................27200.25504100000000
................................................................................................................................................................................................................................................................GGCAAAAAGTAA---GAAGTTCTTTTGAACC..........................................................28200.20400400000000
.......................................................................................................................................................................................................................................................................................................................CTTCATATTGTGGACTCCAAACA...........23200.20404000000000
........................................................................................................................................................................................................................................................................................................TTCGGTCCGAGTAAACTTCATATTGT.......................2660.17100100000000
........................................................................................................................................................................................................................................................................................................TTCGGTCCGAGTAAACTTCA.............................2060.17101000000000
.....................................................................................................................................................................................................................................................................AAAGTAA---GAAGTTCTTTTGAACCGAT--T....................................................27200.15301200000000
.............................................................................................................................................................................................................................................................................................CCGAT--TCAATTCGGTCCGAGT.....................................2170.14101000000000
.......................................................................................................................................................................................................................................TGCATCCC-AATTAAGGCGCCGT...........................................................................................22200.10200000000002
....................................................................................................................................................................................................................................................................................................................AAACTTCATATTGTGGACTCCAAACAGA.........28200.10202000000000
.......................................................................................................................................................................................................................................................................................................................CTTCATATTGTGGACTCCAAACAGGT........26200.10202000000000
.......................................................................................................................................................................................................................................................................................................................CTTCATATTGTGGACTCCAAACAGGTG.......27200.10202000000000
...................................................................................................................................................................................................................................................................................................................TAAACTTCATATTGTGGACTCCAAA.............25200.10202000000000
.........................................................................................................................................................................................................................................................................TAA---GAAGTTCTTTTGAACCGAT--.....................................................22200.10200200000000
........................................................................................................................................................................................................................AGGTAATCTAAGGTTTGCATCCC-AAT......................................................................................................26200.05101000000000
..........................................................................................................................................................................................................................................ATCCC-AATTAAGGCGCCGTAAGGCAA....................................................................................26200.05100000010000
..............................................................................................................................................................................................................................................................AAGGCAAAAAGTAA---GAAGTTCTTTT...............................................................25200.05101000000000
..........................................................................................................................................................................................................................................................................................................................CATATTGTGGACTCCAAACAGGTGA------25200.05100010000000
....................................................................................................................................................................................................................................................................................................................AAACTTCATATTGTGGACTCCAAACAG..........27200.05101000000000
.......................................................................................................................................................................................................................................................................................................................CTTCATATTGTGGACTCCAAAC............22200.05101000000000
............................................................................................................................................................................................................................AATCTAAGGTTTGCATCCC-AATTA....................................................................................................24200.05101000000000
.................................................................................................................................................................................................................................................................................................................AGTAAACTTCATATTGTGGACTCCA...............25200.05101000000000
..............................................................................................................................................................................................................................................................................................................CCGAGTAAACTTCATATTGTGGACTC.................26200.05101000000000
..............................................................................................................................................................................................................................................................................................................CCGAGTAAACTTCATATTGTGGACTCC................27200.05101000000000
......................................................................................................................................................................................................................................TTGCATCCC-AATTAAGGCGC..............................................................................................20200.05100100000000
..................................................................................................................................................................................................................................................................................................................GTAAACTTCATATTGTGGACTCCAAACA...........28200.05100100000000
................................................................................................................................................................................................................................TAAGGTTTGCATCCC-AATTAAGGCGCC.............................................................................................27200.05100100000000
........................................................................................................................................................................................................................AGGTAATCTAAGGTTTGCATCCC-.........................................................................................................23200.05101000000000
.......................................................................................................................................................................................................................................TGCATCCC-AATTAAGGCGCCGTAAG........................................................................................25200.05101000000000
................................................................................................................................................................................................................................................................GGCAAAAAGTAA---GAAGTTCTTTTGAAC...........................................................27200.05100100000000
.............................................................................................................................................................................................................................................CC-AATTAAGGCGCCGTAAGGCAAAA..................................................................................25200.05101000000000
.............................................................................................................................................................................................................................................................................................................TCCGAGTAAACTTCATATTGTGGAG...................25200.05100100000000
.......................................................................................................................................................................................................................................................................AGTAA---GAAGTTCTTTTGAACCGAT--T....................................................25200.05101000000000
..................................................................................................................................................................................................................................................................CAAAAAGTAA---GAAGTTCTTTTGAACCGAT--.....................................................29200.05100100000000
...........................................................................................................................................................TAAGGAGGGTAAGTTAA------------------TTAAC......................................................................................................................................................22200.05100100000000
.........................................................................................................................................................................................................................................................................................................................TCATATTGTGGACTCCAAACAGA.........23200.05101000000000
.......................................................................................................................................................................................................................................................................AGTAA---GAAGTTCTTTTGAAC...........................................................20200.05100100000000
.....................................................................................................................................................................................................................................................................................................................AACTTCATATTGTGGACTCCAAACA...........25200.05101000000000
...................................................................................................................................................................................................................................................................AAAAAGTAA---GAAGTTCTTTTGAACCGAT--.....................................................28200.05100100000000
...........................................................................................................................................................................................................................................TCCC-AATTAAGGCGCCGTAAGGC......................................................................................23200.05101000000000
.......................................................................................................................................................................................................................................TGCATCCC-AATTAAGGCGCCGTAAGGCA.....................................................................................28200.05101000000000
..............................................................................................................................................................................................................................................................................................................................TTGTGGACTCCAAACAGGTGA------21200.05101000000000
.........................................................................................................................................................................................................................................................................................................................TCATATTGTGGACTCCAAACAGGTGT------26200.05100000000001
............................................................................................................................................................................................................................................................GTAAGGCAAAAAGTAA---GAAGT.....................................................................21200.05100100000000
...........................................................................................................................................................................................................................................TCCC-AATTAAGGCGCCGTAAGGCAAA...................................................................................26200.05101000000000
......................................................................................................................................................................................................................................................................................................................ACTTCATATTGTGGACTCCAAACAGG.........26200.05101000000000
........................................................................................................................................................................................................................................................CGCCGTAAGGCAAAAAGTAA---GAAGTTCT..................................................................28200.05100100000000
......................................................................................................................................................................................................................................TTGCATCCC-AATTAAGGCGCCGTAAGGC......................................................................................28200.05100010000000
droEre2
ATG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAATGTTAATTTCGCATCCC-AATTTAGGCGCCGTACGGCAAACAGTAA---AAAGCTTCTTTGAACCGAT--TCCATGCGA--------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/17/2015 at 10:53 PM