ID:

dps_64

 Coordinate:

2:25197945-25198033 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-18.1 -17.5 -17.2 -17.1

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
BEL1_I_Dpse-intLTRPao-
mature
  1. Unknown_group_15:23441-23464 -
  2. Unknown_singleton_869:11176-11199 -
  3. Unknown_singleton_869:17243-17266 -
  4. Unknown_singleton_880:13352-13375 +
  5. Unknown_singleton_880:19385-19408 +
  6. Unknown_singleton_880:25219-25242 +
  7. Unknown_group_362:14950-14973 +
  8. Unknown_group_362:21100-21123 +
  9. dps_64  2:25197972-25197995 +
  10. Unknown_singleton_2424:984-1007 -
  11. Unknown_singleton_1567:346-369 +
  12. Unknown_singleton_3123:100-123 +
  13. Unknown_singleton_1224:25-48 -
  14. Unknown_singleton_3057:236-259 -
star

Sense Strand Reads

TGTGCAGTACCGTAGTGCTTTCCTTCGGCCTATTCTCTACCCTAGAACTTTGCTGGTCACTGTTGTGGAGGAAATAGTGCTTTCTCGAGCATCCGTCGACGGAGCATACTCTTGTTGACTTACAGTGCCTTATAAAGTGTTTGCCAAGGCACCTGCAGCATAGCCTATTTTCTTTGATGAACTGCTTAC
***********************************........((.....((((.....(((((((((........((((((....))))))))).))))))))))........))************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902011
testis
 V112
male body		 SRR902010
ovaries
 M022
male body		 M059
embryo
 M062
head
 GSM343916
embryo
 GSM444067
head
.............................................................................TGCTTTCTCGAGCATCCGTCGACG........................................................................................ 24 0 14 6.43 90 78 6 1 5 0 0 0 0 0
..............................TATTCTCTACCCTAGAACTTTGCTGG..................................................................................................................................... 26 0 1 6.00 6 1 5 0 0 0 0 0 0 0
...................................................................................................................TGACTTACAGTGCCTTATAAAGTGTT................................................ 26 0 15 5.33 80 69 6 1 4 0 0 0 0 0
..................................................TGCTGGTCACTGTTGTGGAGG...................................................................................................................... 21 0 1 5.00 5 1 1 3 0 0 0 0 0 0
....................................................CTGGTCACTGTTGTGGAGGAAATA................................................................................................................. 24 0 1 4.00 4 0 4 0 0 0 0 0 0 0
.................................................TTGCTGGTCACTGTTGTGGAGGAAA................................................................................................................... 25 0 1 4.00 4 0 0 2 2 0 0 0 0 0
.................................TCTCTACCCTAGAACTTTGCTGGTC................................................................................................................................... 25 0 1 4.00 4 0 4 0 0 0 0 0 0 0
....................................................CTGGTCACTGTTGTGGAGGAAATAG................................................................................................................ 25 0 1 4.00 4 2 2 0 0 0 0 0 0 0
..........................................TAGAACTTTGCTGGTCACTGTTG............................................................................................................................ 23 0 1 4.00 4 1 3 0 0 0 0 0 0 0
.......TACCGTAGTGCTTTCCTTCGGCC............................................................................................................................................................... 23 0 9 3.44 31 30 0 0 0 0 1 0 0 0
...............TGCTTTCCTTCGGCCTATTCTCTACCC................................................................................................................................................... 27 0 8 3.25 26 23 1 0 0 0 1 1 0 0
..........................................TAGAACTTTGCTGGTCACTGTT............................................................................................................................. 22 0 1 3.00 3 0 3 0 0 0 0 0 0 0
..................................................TGCTGGTCACTGTTGTGGAGGAA.................................................................................................................... 23 0 1 3.00 3 0 1 2 0 0 0 0 0 0
.................................................TTGCTGGTCACTGTTGTGGAGG...................................................................................................................... 22 0 1 3.00 3 0 0 2 0 1 0 0 0 0
....................................................CTGGTCACTGTTGTGGAGGAAATGG................................................................................................................ 25 1 1 3.00 3 3 0 0 0 0 0 0 0 0
...................................................................................................................TGACTTACAGTGCCTTATAAAGTG.................................................. 24 0 15 2.13 32 32 0 0 0 0 0 0 0 0
..............................TATTCTCTACCCTAGAACTTTGCTG...................................................................................................................................... 25 0 1 2.00 2 0 2 0 0 0 0 0 0 0
.................................................TTGCTGGTCACTGTTGTGGA........................................................................................................................ 20 0 1 2.00 2 0 0 2 0 0 0 0 0 0
..................................................TGCTGGTCACTGTTGTGGAGGA..................................................................................................................... 22 0 1 2.00 2 0 1 1 0 0 0 0 0 0
..........................................................................TAGTGCTTTCTCGAGCATCCGTCGACG........................................................................................ 27 0 1 2.00 2 0 2 0 0 0 0 0 0 0
....................................................CTGGTCACTGTTGTGGAGGAAAT.................................................................................................................. 23 0 1 2.00 2 1 0 0 1 0 0 0 0 0
.................................................TTGCTGGTCACTGTTGTGGAGGAA.................................................................................................................... 24 0 1 2.00 2 1 0 1 0 0 0 0 0 0
.................................................TTGCTGGTCACTGTTGTGGAGGA..................................................................................................................... 23 0 1 2.00 2 0 0 2 0 0 0 0 0 0
..................................................TGCTGGTCACTGTTGTGGAGGAAA................................................................................................................... 24 0 1 2.00 2 1 0 1 0 0 0 0 0 0
.....................................................TGGTCACTGTTGTGGAGGAAATGG................................................................................................................ 24 1 1 2.00 2 2 0 0 0 0 0 0 0 0
.................................TCTCTACCCTAGAACTTTGCTGGTCA.................................................................................................................................. 26 0 1 2.00 2 0 2 0 0 0 0 0 0 0
...................................TCTACCCTAGAACTTTGCTGGTCAC................................................................................................................................. 25 0 1 2.00 2 0 0 0 0 2 0 0 0 0
.....................................................................................................................................................................TATTTTCTTTGATGAACTGCTTAC 24 0 1 2.00 2 0 2 0 0 0 0 0 0 0
..............................TATTCTCTACCCTAGAACTTTGC........................................................................................................................................ 23 0 1 2.00 2 1 1 0 0 0 0 0 0 0
..............................TATTCTCTACTCTAGAACTTTGCTGG..................................................................................................................................... 26 1 1 2.00 2 0 2 0 0 0 0 0 0 0
..................................................TGCTGGTCACTGTTGTGGA........................................................................................................................ 19 0 1 2.00 2 0 2 0 0 0 0 0 0 0
.............................................................................TGCTTTCTCGAGCATCCGTCGACGG....................................................................................... 25 0 14 1.86 26 21 1 0 4 0 0 0 0 0
...................................................................................................................TGACTTACAGTGCCTTATAAAGT................................................... 23 0 15 1.73 26 25 0 0 0 0 0 0 1 0
...................................................................................................................TGACTTACAGTGCCTTATAAAGTGT................................................. 25 0 15 1.47 22 18 0 2 1 0 0 0 0 1
.......................TTCGGCCTATTCTCTACCCTAGAACT............................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................CTGGTCACTGTTGTGGAGGAAATG................................................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................TTTGCTGGTCACTGTTGTGG......................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................TGCTGGTCACTGTTGTGG......................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................TATTCTCTACCCTAGAACTTTCCC....................................................................................................................................... 24 2 1 1.00 1 0 1 0 0 0 0 0 0 0
.................................................TTGCTGGTCACTGTTGTGGAGGAAT................................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................................TAGAACTTTGCTGGTCACTGA.............................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................CTCTACCCTAGAACTTTGCTGGTC................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0
................................................TTTGCTGGTCACTGTTGTGGAGG...................................................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.......................TTCGGCCTATTCTCTACCCTAGAACTT........................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0
....................................................CTGGTCACTGTTGTGGAGG...................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................CCTGCAGCATAGCCTATTTTCTTTGA............ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................................TAGAACTTTGCTGGTCACTGTTGTGG......................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0
............................................................................................................................................TTGCCAAGGCACCTGCAGCATAGCC........................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................TATTCTCTACCCTAGAACTT........................................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0
...............................................ATTTGCTGGTCACTGTTGTGG......................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................................TGCTGGCCCCTGTTGAGGAGGAAA................................................................................................................... 24 3 1 1.00 1 0 0 0 1 0 0 0 0 0
...............................................CTTTGCTGGTCACTGTTGTGGAG....................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.....................................TACCCTAGAACTTTGCTGGTCACT................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................................TGGAGGAAATAGTGCTTTCTCGAGCATC................................................................................................ 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0
....................................................CTGGTCACTGTTGTGGAGGAAA................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..............................TATTCTCTACCCTAGAACTTTGCTGGA.................................................................................................................................... 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0
..............................TATTCTCTACCCTAGAACTTTGCTGGT.................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..............................................ACTTTGCTGGTCACTGTTGTGGAGGA..................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..........................................TAGAACTTTGCTGGTCACTGTTGTG.......................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...................................................GCTGGTCACTGTTGTGGAGGAAATGG................................................................................................................ 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................TGCCAAGGCACCTGCAGCATAGCCTA...................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................................................TGGTCACTGTTGTGGAGGAAATAGT............................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................................................TGGTCACTGTTGTGGAGGAA.................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.................................................TTGCTGGTCACTGTTGTGGAT....................................................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0
............................................................................................................................................TTGCCAAGGCACCTGCAGCATAG.......................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.....................................TACCCTAGAACTTTGCTGG..................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.........................................................................................................................................TGTTTGCCAAGGCACCTGCAGCA............................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................TATTCTCTACCCTAGAACTTTG......................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...............................................CTTTGCTGGTCACTGTTGTGGAGG...................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...............TGCTTTCCTTCGGCCTATTCTCTACC.................................................................................................................................................... 26 0 9 1.00 9 9 0 0 0 0 0 0 0 0
................................................................................................................TGTTGACTTACAGTGCCTTATAAAG.................................................... 25 0 14 0.86 12 10 2 0 0 0 0 0 0 0
..TGCAGTACCGTAGTGCTTTCCTTCGGC................................................................................................................................................................ 27 0 10 0.80 8 5 0 0 3 0 0 0 0 0
....................................................CTGGTTACTGTTGTGGAGGAA.................................................................................................................... 21 1 14 0.79 11 10 0 1 0 0 0 0 0 0
...................................................................................................................TGACTTACAGTGCCTTATAAAGTGTTT............................................... 27 0 15 0.73 11 7 2 0 2 0 0 0 0 0
.............................................................................TGCTTTCTCGAGCATCCGTCGAC......................................................................................... 23 0 14 0.71 10 8 2 0 0 0 0 0 0 0
.......TACCGTAGTGCTTTCCTTCGGCCTAT............................................................................................................................................................ 26 0 9 0.67 6 6 0 0 0 0 0 0 0 0
................GCTTTCCTTCGGCCTATTCTCTACCC................................................................................................................................................... 26 0 8 0.63 5 5 0 0 0 0 0 0 0 0
.............................................................................TGCTTTCTCGAGCATCCGTCGA.......................................................................................... 22 0 14 0.57 8 5 3 0 0 0 0 0 0 0
...............................................................................................................TTGTTGACTTACAGTGCCTTATAAAG.................................................... 26 0 14 0.57 8 7 1 0 0 0 0 0 0 0
...............TGCTTTCCTTCGGCCTATTCTCT....................................................................................................................................................... 23 0 10 0.50 5 5 0 0 0 0 0 0 0 0
...........................................................................................TCCGTCGACGGAGCATACTCTTGT.......................................................................... 24 0 2 0.50 1 1 0 0 0 0 0 0 0 0
.............................................................................TGCTTTCTCGAGCATCCGTCGACGGAGC.................................................................................... 28 0 2 0.50 1 1 0 0 0 0 0 0 0 0
....................................................................................TCGAGCATCCGTCGACGGAG..................................................................................... 20 0 2 0.50 1 0 0 1 0 0 0 0 0 0
.............................................................................TGCTTTCTCGAGCATCCGTCGACGGAGCA................................................................................... 29 0 2 0.50 1 1 0 0 0 0 0 0 0 0
.......TACCGTAGTGCTTTCCTTCGGC................................................................................................................................................................ 22 0 10 0.50 5 5 0 0 0 0 0 0 0 0
..................TTTCCTTCGGCCTATTCTCTACCC................................................................................................................................................... 24 0 8 0.50 4 3 0 0 0 0 1 0 0 0
.....................................................................................CGAGCATCCGTCGACGGAGCATACA............................................................................... 25 1 2 0.50 1 1 0 0 0 0 0 0 0 0
...........................................................................................TCCGTCGACGGAGCATACT............................................................................... 19 0 2 0.50 1 1 0 0 0 0 0 0 0 0
..................................................TGCTGGTCACTGTTGTGGT........................................................................................................................ 19 1 2 0.50 1 0 0 1 0 0 0 0 0 0
TGTGCAGTACCGTAGTGCTTTCCTT.................................................................................................................................................................... 25 0 12 0.42 5 5 0 0 0 0 0 0 0 0
...................................................................................................................TGACTTACAGTGCCTTATAAAG.................................................... 22 0 15 0.40 6 6 0 0 0 0 0 0 0 0
..TGCAGTACCGTAGTGCTTTCCTTCGGCC............................................................................................................................................................... 28 0 9 0.33 3 3 0 0 0 0 0 0 0 0
..................................................TGCTGGTTACTGTTGTGGAGGAAA................................................................................................................... 24 1 3 0.33 1 1 0 0 0 0 0 0 0 0
....................................................CTGGTTACTGTTGTGGAGGAAA................................................................................................................... 22 1 3 0.33 1 1 0 0 0 0 0 0 0 0
....................................................................................................................GACTTACAGTGCCTTATAAAGTGTT................................................ 25 0 15 0.33 5 5 0 0 0 0 0 0 0 0
.............................................................................TGCTTTCTCGAGCATCCGTCAACG........................................................................................ 24 1 14 0.29 4 4 0 0 0 0 0 0 0 0
.............................................................................TGCTTTCTCGAGCATCCGTCAACGG....................................................................................... 25 1 14 0.29 4 4 0 0 0 0 0 0 0 0
....................TCCTTCGGCCTATTCTCTACCCTA................................................................................................................................................. 24 0 8 0.25 2 2 0 0 0 0 0 0 0 0
......................CTTCGGCCTATTCTCTACCCTAG................................................................................................................................................ 23 0 8 0.25 2 0 2 0 0 0 0 0 0 0
....................................................CTGGTTACTGTTGTGGAGAAAA................................................................................................................... 22 2 4 0.25 1 1 0 0 0 0 0 0 0 0
.......................TTCGGCCTATTCTCTACCCTA................................................................................................................................................. 21 0 8 0.25 2 2 0 0 0 0 0 0 0 0
....................................................CTGGTTACTGTTGTGGAAAAAA................................................................................................................... 22 3 8 0.25 2 2 0 0 0 0 0 0 0 0
TGTGCAGTACCGTAGTGCTTTCCTTC................................................................................................................................................................... 26 0 12 0.25 3 3 0 0 0 0 0 0 0 0
.................CTTTCCTTCGGCCTATTCTCTACCC................................................................................................................................................... 25 0 8 0.25 2 2 0 0 0 0 0 0 0 0
TGTGCAGTACCGTAGTGCTTTTCTTCG.................................................................................................................................................................. 27 1 13 0.23 3 0 0 0 3 0 0 0 0 0
........ACCGTAGTGCTTTCCTTCGGCCTA............................................................................................................................................................. 24 0 9 0.22 2 2 0 0 0 0 0 0 0 0
.......TACCGTAGTGCTTTCCTTCGGCCA.............................................................................................................................................................. 24 1 9 0.22 2 2 0 0 0 0 0 0 0 0
...............TGCTTTCCTTCGGCCTATTCTCTA...................................................................................................................................................... 24 0 9 0.22 2 2 0 0 0 0 0 0 0 0
.............................................................................TGCTTTCTCGAGCATCCGTCG........................................................................................... 21 0 14 0.21 3 3 0 0 0 0 0 0 0 0
....................................................................................................................GACTTACAGTGCCTTATAAAGTG.................................................. 23 0 15 0.20 3 3 0 0 0 0 0 0 0 0
.......TACCGTAGTGCTTTCCTTCGG................................................................................................................................................................. 21 0 12 0.17 2 2 0 0 0 0 0 0 0 0
TGTGCAGTACCGTAGTGCTTTCCT..................................................................................................................................................................... 24 0 12 0.17 2 2 0 0 0 0 0 0 0 0
..TGCAGTACCGTAGTGCTTTCCTTC................................................................................................................................................................... 24 0 12 0.17 2 2 0 0 0 0 0 0 0 0
....................................................GTGGTCAGTGTTGTGGAGGAA.................................................................................................................... 21 2 13 0.15 2 2 0 0 0 0 0 0 0 0
................................................................................................................TGTTGACTTACAGTGCCTTATAA...................................................... 23 0 14 0.14 2 2 0 0 0 0 0 0 0 0
.............................................................................TGCTTTCTCGAGCATCCGTC............................................................................................ 20 0 14 0.14 2 2 0 0 0 0 0 0 0 0
..............................................................................GCTTTCTCGAGCATCCGTCGACG........................................................................................ 23 0 14 0.14 2 2 0 0 0 0 0 0 0 0
..................................................................................................................TTGACTTACAGTGCCTTATAAAGTGTT................................................ 27 0 15 0.13 2 2 0 0 0 0 0 0 0 0
.................................................................................................................GTTGACTTACAGTGCCTTATAAAG.................................................... 24 0 15 0.13 2 2 0 0 0 0 0 0 0 0
..................ATACCTTCGGCCTATTCTCTACCC................................................................................................................................................... 24 2 8 0.13 1 1 0 0 0 0 0 0 0 0
.......................TTCGGCCTATTCTCTACCCT.................................................................................................................................................. 20 0 8 0.13 1 1 0 0 0 0 0 0 0 0
.......................TTCGGCCTATTCTCTACCCTAG................................................................................................................................................ 22 0 8 0.13 1 1 0 0 0 0 0 0 0 0
....................TCCTTCGGCCTATTCTCTACCCTAG................................................................................................................................................ 25 0 8 0.13 1 1 0 0 0 0 0 0 0 0
........................TCGGCCTATTCTCTACCCTAGA............................................................................................................................................... 22 0 8 0.13 1 0 0 0 1 0 0 0 0 0
....................TCCTTCGGCCTATTCTCTACCCTAGA............................................................................................................................................... 26 0 8 0.13 1 1 0 0 0 0 0 0 0 0
........ACCGTAGTGCTTTCCTTCGGCCTATTCTC........................................................................................................................................................ 29 0 8 0.13 1 1 0 0 0 0 0 0 0 0
.................TATACCTTCGGCCTATTCTCTACCC................................................................................................................................................... 25 3 8 0.13 1 1 0 0 0 0 0 0 0 0
........................TCGGCCTATTCTCTACCCTAG................................................................................................................................................ 21 0 8 0.13 1 1 0 0 0 0 0 0 0 0
...................TACCTTCGGCCTATTCTCTACCC................................................................................................................................................... 23 1 8 0.13 1 1 0 0 0 0 0 0 0 0
......................CTTCGGCCTATTCTCTACA.................................................................................................................................................... 19 1 9 0.11 1 1 0 0 0 0 0 0 0 0
...................TACCTTCGGCCTATTCTCTACC.................................................................................................................................................... 22 1 9 0.11 1 1 0 0 0 0 0 0 0 0
.......TACCGTAGTGCTTTCCTTCGGCCTATTC.......................................................................................................................................................... 28 0 9 0.11 1 1 0 0 0 0 0 0 0 0
...............TGCTTTCCTTCGGCCTATTCTCTAC..................................................................................................................................................... 25 0 9 0.11 1 1 0 0 0 0 0 0 0 0
............TAGTGCTTTCCTTCGGCCTATTCTC........................................................................................................................................................ 25 0 9 0.11 1 1 0 0 0 0 0 0 0 0
..................TTTCCTTCGGCCTATTCTCTACC.................................................................................................................................................... 23 0 9 0.11 1 1 0 0 0 0 0 0 0 0
........ACCGTAGTGCTTTCCTTCGGCCTATTC.......................................................................................................................................................... 27 0 9 0.11 1 1 0 0 0 0 0 0 0 0
........ACCGTAGTGCTTTCCTTCGGCC............................................................................................................................................................... 22 0 9 0.11 1 1 0 0 0 0 0 0 0 0
......GTACCGTAGTGCTTTCCTTCGGCC............................................................................................................................................................... 24 0 9 0.11 1 1 0 0 0 0 0 0 0 0
.........CCGTAGTGCTTTCCTTCGGCCTATT........................................................................................................................................................... 25 0 9 0.11 1 1 0 0 0 0 0 0 0 0
.............AGTGCTTTCCTTCGGCCTATTCTCT....................................................................................................................................................... 25 0 9 0.11 1 1 0 0 0 0 0 0 0 0
.....AGTACCGTAGTGCTTTCCTTCGGCC............................................................................................................................................................... 25 0 9 0.11 1 1 0 0 0 0 0 0 0 0
.......TACCGTAGTGCTTTCCTTCGGCCT.............................................................................................................................................................. 24 0 9 0.11 1 1 0 0 0 0 0 0 0 0
....................TCCTTCGGCCTATTCTCTACC.................................................................................................................................................... 21 0 9 0.11 1 0 0 0 0 0 1 0 0 0
................GCTTTCCTTCGGCCTATTCTCTACC.................................................................................................................................................... 25 0 9 0.11 1 1 0 0 0 0 0 0 0 0
..................TTTCCTTCGGCCTATTCTCTA...................................................................................................................................................... 21 0 9 0.11 1 1 0 0 0 0 0 0 0 0
............TAGTGCTTTCCTTCGGCCTATTCT......................................................................................................................................................... 24 0 9 0.11 1 1 0 0 0 0 0 0 0 0
.......TACCGTAGTGCTTTCCTTCGGCCTATT........................................................................................................................................................... 27 0 9 0.11 1 1 0 0 0 0 0 0 0 0
.......TACCGTAGTGCTTTCCTTCTGCC............................................................................................................................................................... 23 1 9 0.11 1 1 0 0 0 0 0 0 0 0
...GCAGTACCGTAGTGCTTTCCTTCGGCC............................................................................................................................................................... 27 0 9 0.11 1 1 0 0 0 0 0 0 0 0
................GCTTTCCTTCGGCCTATTCTCT....................................................................................................................................................... 22 0 10 0.10 1 1 0 0 0 0 0 0 0 0
TGTGCAGTACCGTAGTGCTTTCCTTCGGC................................................................................................................................................................ 29 0 10 0.10 1 1 0 0 0 0 0 0 0 0
...........GTAGTGCTTTCCTTCGGCCTATT........................................................................................................................................................... 23 0 10 0.10 1 1 0 0 0 0 0 0 0 0
.......TACCGTAGTGCTTTCCTTCGGCAC.............................................................................................................................................................. 24 2 10 0.10 1 1 0 0 0 0 0 0 0 0
..........CGTAGTGCTTTCCTTCGGCC............................................................................................................................................................... 20 0 10 0.10 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................TAAAGTGTTTGCCAAGGCACC.................................... 21 0 11 0.09 1 1 0 0 0 0 0 0 0 0
TGTGCAGTACCGTAGTGCCTTCCTT.................................................................................................................................................................... 25 1 12 0.08 1 1 0 0 0 0 0 0 0 0
...................................................................................................................TGACTTACAGTGCCTTATAAAGTGTTTGC............................................. 29 0 12 0.08 1 1 0 0 0 0 0 0 0 0
........................................................ACATGGTTGTGGAGGAAATA................................................................................................................. 20 3 12 0.08 1 0 0 1 0 0 0 0 0 0
....CAGTACCGTAGTGCTTTCCTTCG.................................................................................................................................................................. 23 0 12 0.08 1 1 0 0 0 0 0 0 0 0
TGTGCAGTACCGTAGTGCTTTCCC..................................................................................................................................................................... 24 1 12 0.08 1 0 0 0 0 0 1 0 0 0
...GCAGTACCGTAGTGCTTTCCTT.................................................................................................................................................................... 22 0 12 0.08 1 1 0 0 0 0 0 0 0 0
.GTGCAGTACCGTAGTGCTTTCCT..................................................................................................................................................................... 23 0 12 0.08 1 1 0 0 0 0 0 0 0 0
..TGCAGTACCGTAGTGCTTTCCTTCGG................................................................................................................................................................. 26 0 12 0.08 1 1 0 0 0 0 0 0 0 0
..TGCAGTACCGTAGTGCTTTCCTTCG.................................................................................................................................................................. 25 0 12 0.08 1 1 0 0 0 0 0 0 0 0
...GCAGTACCGTAGTGCTTTCCTTCG.................................................................................................................................................................. 24 0 12 0.08 1 1 0 0 0 0 0 0 0 0
TTTGCAGTACCGTAGTGCTTTCCTTC................................................................................................................................................................... 26 1 12 0.08 1 0 0 0 0 0 1 0 0 0
TGTGCAGTACCGTAGTGCTTTCC...................................................................................................................................................................... 23 0 12 0.08 1 1 0 0 0 0 0 0 0 0
...................................................................................................................TGACTTACAGTGCCTTATAAAGTGTTTG.............................................. 28 0 12 0.08 1 1 0 0 0 0 0 0 0 0
TGTGCAGTACCGTAGTGCTTTCCTTCA.................................................................................................................................................................. 27 1 13 0.08 1 1 0 0 0 0 0 0 0 0
................................................................................TTTCTCGAGCATCCGTCGACG........................................................................................ 21 0 14 0.07 1 1 0 0 0 0 0 0 0 0
................................................................................................................TGTTGACTTACAGTGCCTTATAAAGTGT................................................. 28 0 14 0.07 1 1 0 0 0 0 0 0 0 0
..............................................................................GCTTTCTCGAGCATCCGTCGA.......................................................................................... 21 0 14 0.07 1 1 0 0 0 0 0 0 0 0
.................................................................................TTCTCGAGCATCCGTCGACGA....................................................................................... 21 1 14 0.07 1 1 0 0 0 0 0 0 0 0
.............................................................................TGCTTTCTCGAGCATTCGTCGACGG....................................................................................... 25 1 14 0.07 1 1 0 0 0 0 0 0 0 0
..............................................................................GCTTTCTCGAGCATCCGTCAACG........................................................................................ 23 1 14 0.07 1 1 0 0 0 0 0 0 0 0
.............................................................................TGCTTTCTCGAGCATCCGTCGACGA....................................................................................... 25 1 14 0.07 1 1 0 0 0 0 0 0 0 0
.....................................................TGGTTACTGTTGTGGAGGAA.................................................................................................................... 20 1 14 0.07 1 1 0 0 0 0 0 0 0 0
.............................................................................TGCCTTCTCGAGCATCCGTCGACGG....................................................................................... 25 1 14 0.07 1 1 0 0 0 0 0 0 0 0
..........................................................................................................TACTCTTGTTGACTTACAGTGCCTTA......................................................... 26 0 14 0.07 1 1 0 0 0 0 0 0 0 0
.................................................................TGGAGGAAATGGTGCTTTCTCGAG.................................................................................................... 24 1 14 0.07 1 1 0 0 0 0 0 0 0 0
.............................................................................TGCTTTCTCGAGCATCCGTCAAC......................................................................................... 23 1 14 0.07 1 1 0 0 0 0 0 0 0 0
................................................................................................................TGTTGACTTACAGTGCCTTATAAAAA................................................... 26 2 14 0.07 1 1 0 0 0 0 0 0 0 0
...............................................................................................................TTGTTGACTTACAGTGCCTTATA....................................................... 23 0 14 0.07 1 1 0 0 0 0 0 0 0 0
................................................................................................................TGTTGACTTACAGTGCCTTATAAAGTG.................................................. 27 0 14 0.07 1 1 0 0 0 0 0 0 0 0
.............................................................................TGCTTTCTCAAGCATCCGTCGACG........................................................................................ 24 1 14 0.07 1 1 0 0 0 0 0 0 0 0
.............................................................................TGCTTCCTCGAGCATCCGTCAAC......................................................................................... 23 2 14 0.07 1 1 0 0 0 0 0 0 0 0
..........................................................................................................TACTCTTGTTGACTTACAGTGCCTT.......................................................... 25 0 14 0.07 1 1 0 0 0 0 0 0 0 0
.............AGTGCGTTCCTTCGGCAT.............................................................................................................................................................. 18 2 14 0.07 1 1 0 0 0 0 0 0 0 0
.............................................................................TGCTTTCTCGAGCATCCGTCAA.......................................................................................... 22 1 14 0.07 1 1 0 0 0 0 0 0 0 0
..............................................................................GCTTTCTCGAGCATCCGTCGACGG....................................................................................... 24 0 14 0.07 1 1 0 0 0 0 0 0 0 0
...................................................................................................................TGACTTACAGTGCCTTATAAAGTGTC................................................ 26 1 15 0.07 1 0 0 0 0 0 1 0 0 0
.........................................................................................................................ACAGTGCCTTATAAAGTGT................................................. 19 0 15 0.07 1 1 0 0 0 0 0 0 0 0
..................................................................................................................TTGACTTACAGTGCCTTATAAA..................................................... 22 0 15 0.07 1 0 1 0 0 0 0 0 0 0
...................................................................................................................TGATTTACAGTGCCTTATAAAGTGTT................................................ 26 1 15 0.07 1 0 0 0 0 0 1 0 0 0
.......................................................................................................................TTACAGTGCCTTATAAAGTG.................................................. 20 0 15 0.07 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................ACAGTTCCTTATAAAGAGTTT............................................... 21 2 15 0.07 1 0 0 1 0 0 0 0 0 0
...................................................................................................................TCACTTACAGTGCCTTATAAAGTGTT................................................ 26 1 15 0.07 1 1 0 0 0 0 0 0 0 0
................................................................................................................CTTTGACTTACAGTGCCTTATAAAG.................................................... 25 2 15 0.07 1 1 0 0 0 0 0 0 0 0
.............................................................................TGCTTTCTCGAGCATCTGTCGACGG....................................................................................... 25 1 15 0.07 1 1 0 0 0 0 0 0 0 0
...................................................................................................................TGACTTACAGTGCCTTATA....................................................... 19 0 15 0.07 1 1 0 0 0 0 0 0 0 0
...................................................................................................................TTACTTACAGTGCCTTATAAAGTGT................................................. 25 1 15 0.07 1 0 0 0 0 0 1 0 0 0
..................................................................................................................TTGACTTACAGTGCCTTATAAAG.................................................... 23 0 15 0.07 1 1 0 0 0 0 0 0 0 0
........................................................................................................................TACAGTGCCTTATAAAGTGTTT............................................... 22 0 15 0.07 1 1 0 0 0 0 0 0 0 0
......................................................................................................................CTTACAGTGCCTTATAAAGTGT................................................. 22 0 15 0.07 1 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

ACACGTCATGGCATCACGAAAGGAAGCCGGATAAGAGATGGGATCTTGAAACGACCAGTGACAACACCTCCTTTATCACGAAAGAGCTCGTAGGCAGCTGCCTCGTATGAGAACAACTGAATGTCACGGAATATTTCACAAACGGTTCCGTGGACGTCGTATCGGATAAAAGAAACTACTTGACGAATG
*************************************************************************........((.....((((.....(((((((((........((((((....))))))))).))))))))))........))*********************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902011
testis
 V112
male body		 M062
head
 SRR902010
ovaries
 M059
embryo
 GSM343916
embryo
.......................................GGGATCTTGAAACGACCAGTGAC............................................................................................................................... 23 0 1 7.00 7 7 0 0 0 0 0 0
........................................GGATCTTGAAACGACCAGTGAC............................................................................................................................... 22 0 1 4.00 4 3 1 0 0 0 0 0
.......................................................................................................................................................GGACGTCGTATCGGATAAAAGAAACT............ 26 0 1 2.00 2 0 0 1 1 0 0 0
..............................................................AACACCTCCTTTATCACGAAAGAGCT..................................................................................................... 26 0 1 2.00 2 0 2 0 0 0 0 0
......................................TGGGATCTTGAAACGACCAGTGAC............................................................................................................................... 24 0 1 2.00 2 2 0 0 0 0 0 0
..........................................................................................................................................................CGTCGTATCGGATAAAAGAAACT............ 23 0 1 2.00 2 1 1 0 0 0 0 0
.................................AGAGATGGGATCTTGAAACGACCAGT.................................................................................................................................. 26 0 1 2.00 2 2 0 0 0 0 0 0
.......................................................................................................CGTATGAGAACAACTGAATGTC................................................................ 22 0 5 1.60 8 3 3 2 0 0 0 0
....................................................................................................CCTCGTATGAGAACAACTGAATGTC................................................................ 25 0 5 1.00 5 5 0 0 0 0 0 0
........................................................................................................................................................GACGTCGTATCGGATAAAAGAAACTG........... 26 1 1 1.00 1 1 0 0 0 0 0 0
.................................AGAGATGGGATCTTGAAACGAACAGT.................................................................................................................................. 26 1 1 1.00 1 0 0 1 0 0 0 0
............................GGATAAGAGATGGGATCTTGAAAC......................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0
............................................................................................................................................................TCGTATCGGATAAAAGAAACTACT......... 24 0 1 1.00 1 0 1 0 0 0 0 0
.......................................GGGATCTTGAAACGACCAGTGA................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................................CTCGTATGAGAACAACTGAATGTC................................................................ 24 0 5 1.00 5 3 0 1 0 0 1 0
.............................GATAAGAGATGGGATCTTGAAAC......................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0
.........................................................................................................................................................ACGTCGTATCGGATAAAAGAAACT............ 24 0 1 1.00 1 1 0 0 0 0 0 0
..............................................................AACACCTCCTTTACCACGAAAGAGC...................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0
.........................................GATCTTGAAACGACCAGTGAC............................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0
...................................................................................................GCCTCGTATGAGAACAACTGAATGTC................................................................ 26 0 4 0.75 3 3 0 0 0 0 0 0
..................................................................................................TGCCTCGTATGAGAACAACTGAATGTC................................................................ 27 0 4 0.75 3 3 0 0 0 0 0 0
.CACGTCATGGCATCACGAAAGGAA.................................................................................................................................................................... 24 0 12 0.58 7 6 1 0 0 0 0 0
.........GGCATCACGAAAGGAAGCCGGAT............................................................................................................................................................. 23 0 9 0.56 5 3 0 1 0 0 0 1
................................................................................................GCTGCCTCGTATGAGAACAACTGAA.................................................................... 25 0 2 0.50 1 1 0 0 0 0 0 0
............................................................................................................GAGAACAACTGAATGTCACGGAATAT....................................................... 26 0 14 0.36 5 2 2 0 0 1 0 0
..........................................................................................................................GTCACGGAATATTTCACAAACGGT........................................... 24 0 10 0.30 3 3 0 0 0 0 0 0
........................................................................................................GTGTGAGAACAACTGAATGTC................................................................ 21 1 17 0.29 5 4 0 0 0 0 1 0
............................................................................................................GAGAACAACTGAATGTCACGGAAT......................................................... 24 0 14 0.29 4 0 2 0 0 2 0 0
...................................................................................................GCCTCGTATGAGAACAACTGAAT................................................................... 23 0 4 0.25 1 1 0 0 0 0 0 0
...CGTCATGGCATCACGAAAGGAA.................................................................................................................................................................... 22 0 12 0.25 3 3 0 0 0 0 0 0
..............CACGAAAGGAAGCCGGATAAGAGATG..................................................................................................................................................... 26 0 8 0.25 2 0 2 0 0 0 0 0
........................................................................................................GTGTGAGAACAACTGAATGT................................................................. 20 1 17 0.24 4 4 0 0 0 0 0 0
......................................................................................................TCGTATGAGAACAACTGAATGT................................................................. 22 0 5 0.20 1 1 0 0 0 0 0 0
.......................................................................................................CGTATGAGAACAACTGAATGTCACGGAA.......................................................... 28 0 5 0.20 1 0 1 0 0 0 0 0
.....................................................................................................CTCGTATGAGAACAACTGAATGGC................................................................ 24 1 5 0.20 1 0 0 0 1 0 0 0
....................................................................................................CCTCGTATGAGAACAACTGAATGT................................................................. 24 0 5 0.20 1 1 0 0 0 0 0 0
.................................................................................................................................AATATTTCACAAACGGTTCCGT...................................... 22 0 11 0.18 2 0 0 0 0 2 0 0
.......................................GGGATCTTGAAACGACCAATGAC............................................................................................................................... 23 1 12 0.17 2 2 0 0 0 0 0 0
ACACGTCATGGCATCACGAAAG....................................................................................................................................................................... 22 0 14 0.14 2 2 0 0 0 0 0 0
...........................................................................................................TGAGAACAACTGAATGTCACGGAAT......................................................... 25 0 14 0.14 2 0 0 0 0 2 0 0
.....................GGAAGCCGGATAAGAGATGGGAT................................................................................................................................................. 23 0 8 0.13 1 0 1 0 0 0 0 0
....................AGGAAGCCGGATAAGAGATGGGATCT............................................................................................................................................... 26 0 8 0.13 1 0 1 0 0 0 0 0
..............CACGAAAGGAAGCCGGATAAGAGAT...................................................................................................................................................... 25 0 8 0.13 1 1 0 0 0 0 0 0
..........................................................................................................GTGAGAACAACTGAATGTC................................................................ 19 1 17 0.12 2 2 0 0 0 0 0 0
.................AAAAGGAAGCCGGATAAGAGAT...................................................................................................................................................... 22 1 9 0.11 1 1 0 0 0 0 0 0
.....................GGAAGCCGGATAAGAGAT...................................................................................................................................................... 18 0 9 0.11 1 1 0 0 0 0 0 0
................CGAAAGGAAGCCGGATAAGAGAT...................................................................................................................................................... 23 0 9 0.11 1 1 0 0 0 0 0 0
............................................................................................................................CACGGAATATTTCACAAACGGTTCC........................................ 25 0 10 0.10 1 1 0 0 0 0 0 0
..........................................................................................................................GTCACGGAATATTTCACAAACGGTT.......................................... 25 0 10 0.10 1 1 0 0 0 0 0 0
......................................................................................................................GAATGTCACGGAATATTTCACAAACGGT........................................... 28 0 10 0.10 1 1 0 0 0 0 0 0
..........................................................................................................................GTCACGGAATATTTCACAAACGGTTCCGT...................................... 29 0 10 0.10 1 1 0 0 0 0 0 0
......................................................................................................................GAATGTCACGGAATATTTCACAAACCGT........................................... 28 1 10 0.10 1 0 0 0 0 0 1 0
..........GCATCACGAAAGGAAGCCGGTCAT........................................................................................................................................................... 24 3 10 0.10 1 1 0 0 0 0 0 0
.......................................................................................................................AATGTCACGGAATATTTCACAAACGGT........................................... 27 0 10 0.10 1 1 0 0 0 0 0 0
...........................................................................................................................TCACGGAATATTTCACAAACGGTTCCGT...................................... 28 0 10 0.10 1 1 0 0 0 0 0 0
............................................................................................................................AACGGAATATTTCACAAACGGT........................................... 22 1 10 0.10 1 1 0 0 0 0 0 0
............................................................................................................................CACGGAATATTTCACAAACGGT........................................... 22 0 10 0.10 1 1 0 0 0 0 0 0
.....................................................................................................................AAAATGTCACGGAATATTTCACAAACGGT........................................... 29 2 10 0.10 1 1 0 0 0 0 0 0
.......................................GGGATCTTGAAACGACCAATGACAA............................................................................................................................. 25 1 12 0.08 1 0 0 0 0 0 0 1
..ACGTCATGGCATCACGAAAGGAA.................................................................................................................................................................... 23 0 12 0.08 1 1 0 0 0 0 0 0
.....................................ATGGGATCTTGAAACGACCAATGAC............................................................................................................................... 25 1 12 0.08 1 0 0 1 0 0 0 0
............................................................................................................GAGAACAACTGAATGTCACGGAATA........................................................ 25 0 14 0.07 1 1 0 0 0 0 0 0
.............................................................................................................AGAACAACTGAATGTCACGGAATAT....................................................... 25 0 14 0.07 1 0 0 0 0 1 0 0
................................................................................................................ACAACTGAATGTCACGGAATATTTCAC.................................................. 27 0 14 0.07 1 0 1 0 0 0 0 0
................................................................................................................ACAACTGAATGTCACGGAATATTT..................................................... 24 0 14 0.07 1 0 1 0 0 0 0 0
............................................................................................................GAGAACAACTGAATGTCACGGAATATT...................................................... 27 0 14 0.07 1 0 0 0 0 1 0 0
..............................................................................CGAAAGAGCTCGTAGGCAGCTGCCT...................................................................................... 25 0 14 0.07 1 1 0 0 0 0 0 0
..........................................................................................................ATGAGAACAACTGAATGTCACGGAAT......................................................... 26 0 14 0.07 1 1 0 0 0 0 0 0
.................................................................ACCTCCTTTACCACGAAAGAGCTCG................................................................................................... 25 1 14 0.07 1 1 0 0 0 0 0 0
..........................................................................................................GTGAGAACAACTGAATGTCACGGAAT......................................................... 26 1 14 0.07 1 1 0 0 0 0 0 0
..........................................................................................................ATGAGAACAACTGAATGTCA............................................................... 20 0 16 0.06 1 1 0 0 0 0 0 0
.........................................................................................................TGTGAGAACAACTGAATGTC................................................................ 20 1 17 0.06 1 1 0 0 0 0 0 0
.......................................................................................................AGTGTGAGAACAACTGAATGTC................................................................ 22 2 17 0.06 1 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 2:25197895-25198083 + dps_64 TGTGCAGTA-CCGTAGTGCTTTC---------------------------------CTTCGGCC--TATTCT--CTACCCTAGA------ACTTT----GCTGGTC-ACTGTT-GTGGAGGAAATAGTGCTTTCTCGAGCATCCGTCGACGGAGCATACTCTTGTTGACTTACAGTGCCTTATAAAGTGTTTGCCAAGGCACCTGCAGCATAGCCTATTTTCTTTGATGA---------------------------------ACTGCTTAC
droPer2 scaffold_6:503360-503548 + TGTGAAGTA-CCGTAGTGCTTTC---------------------------------CTTCGGCC--TATTCT--CTACCCTAGA------ACTTT----GCTGGTC-ACTGTT-GTGGAGGAAATGGTGCTTTCTCGAGCATCCGTCGACGGAGCATACTCTTGTTGACTTACAGTGCCTTATAAAGTGTTTGCCAAGGCACCTGCAGCATAGCCTATTTTCTTTGACAA---------------------------------ACTGCTTAC
droWil2 scf2_1100000004954:1489406-1489616 - AATAAAATTGGTGGATTAA-CTGGTTTATCATTCGTCTCATTCGTCTGC------------TAC--TGCGAT--TTGCTTT---CCTTGTAGTC----CGATGT---CTCGTG-GATTAACGAGTGGTGTATCTGCCTGCACCCATCGACACCACAACTTCGTTTACTTTTGCAATTCCGTATCACGTGCTGATCAAAACAACAATAGCAGAGCCTCTTTTGCCGCACGA---------------------------------ACTCCTTTC
droVir3 scaffold_13045:1972487-1972672 - ACAGCCCCA-TTGTTGCTACCTT-------------------------------------GGCCCATGTGCT--CATCTTT---ACTTACGTTC----GTGGTAGG-CGTATG-TAGCAGTACATGGTGCGTTGACTCGCAACCATCCACGTGACATATCTTCTTTGTTTTACACTGTTGTGCAAGATGTCGCATAAAGCAGCAACGGCAGAGCCGCTTTTCCTTGACAA---------------------------------GTTA----C
droAna3 scaffold_13082:52161-52368 - AAAGAACAG-TGCCGACTCTTTTGTTTCTTCCTTTTTGAGTTCCTCCGAACCGACGTCGAA------------------C-----TTTATCGTA----GGGCGTTC-CGAGTG-CAGAAGCCCATTATGCAGTAATTTACATCCATCAAA-TTACACGG-CTTTTCAATCTGCAGTCTCGAGCAGTATGGTTTCCAAAACAGCAGAAACATAGTCGTTTAGCCTTAATGACTTCTAGTC--------------------------------T
droBip1 scf7180000394848:8729-8921 + TGTGCAAAG-TTGTTGCGCTTTC---------------------------------TTCTGAAT--TGTTGTAACTTCTTTGAA------GCTTTCTCAGGTCATC-TTGGTG-GGGAAGGCAATGGTGTTTTCTAGTGCATCCATTTACACCACCTACTCGTGACGATTTGCAGTGTCTTATGTTGTTTCTATCTACGCATCTCCAGCATATCTATCTTTTATGTCTAA---------------------------------ATTGTT--T
droKik1 scf7180000299342:14105-14317 + GTTATTATA-TCGCTAGTTTTCT-------------------TCTCTTG--------------T--TCGACC--TGGTCCTCGT------TCTCA----ACTCGCTCCAAGTG-TGGAACCTTATTGTGCTGTAACTTGCATCCATTGACATTGCAAGTCTTCTTTACTCTACAGTTCCGATCAATATGCTTCCCAAAGCAACAGAAGCATAGTCGTTTTGCCTTTATTATGTCCAATCTAG-------ACTTGATTGAC---ATTGCCAAA
droFic1 scf7180000453334:14210-14371 - TATAAAAAC-CGATAGCG-----------------------------------------AACCG--TGTTGT--CTGTTCT---GTTTACCAAA----TGAAAATC-TGTTTT-CAGGAGAAAGTTGTACTTTCTCGT-------------------ACTTTCGATGACCTGCAGTGTCTTATAAAATGTTATCCATAGTATCATTAACATAGTTAGCATTCTATGAAAAAG---------------------------------TTC---T
droEle1 scf7180000490162:21650-21659 - AATTCTCTG-C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000298506:4451-4626 + TCGGATTTC-CTGCCATT-----------------------------------------GGTTC--TGTTTT--CAGCTCT---GTTTACATTT----TGATTTTC-GTTGCAAAAGGAGAAAATTGTGCTTTGTCGTACATAAATCTACGGAACAGTTTCGTGATGCTCTGCAATGTCGTATGAGGTGTTTG-TAAAGCATCTCGAGCACAATTTTCTTTCATTTATGA---------------------------------A--------
droTak1 scf7180000414944:707-931 + TATGCAAAA-CGGGTTCGCTGTC---------------------------------ATTTGTCC--TGTTTT--CAGCTCT---GCTTACATTT----TGATTTCC-GTTGTG-AAGGAGAAAATTGTGCTTTCTCGTACATCCATCCACGGAACAGTTTCGTGATGCTCTGCAATGTCGTATGAAGTGTTTTCCAAAGCATCTCCAGCACAATCTGCTCTCCTTTATGAAATTCCATCTATCGTGCACGCTTAAGGCACGAAATTCTCTGC
droYak3 v2_chr2h_random_005:225008-225185 - AGAGAACTG-GCGAAACGACTAA---------------------------------TGTTTCCT--TATCGT---------ATC------GTTTG----ATAAATA-AGCGTG-AAGCAGAGCGTGGCGAATTCTC-TACAGTCGTCCAATCCGCAACTCTTTCTGGATCTGCAGTTCCGAACTGCGTGTGGCCGCAGGCAGCAATAGCATACATTTCTAGTTCTCACGAAA---------------------------------TCC---C

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
TGTGCAGTA-CCGTAGTGCTTTC---------------------------------CTTCGGCC--TATTCT--CTACCCTAGA------ACTTT----GCTGGTC-ACTGTT-GTGGAGGAAATAGTGCTTTCTCGAGCATCCGTCGACGGAGCATACTCTTGTTGACTTACAGTGCCTTATAAAGTGTTTGCCAAGGCACCTGCAGCATAGCCTATTTTCTTTGATGA---------------------------------ACTGCTTACSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................................................................................................................TGCTTTCTCGAGCATCCGTCGACG.........................................................................................................................24146.439007800001560
..................................................................TATTCT--CTACCCTAGA------ACTTT----GCTGG........................................................................................................................................................................2616.0060100000050
.....................................................................................................................................................................TGACTTACAGTGCCTTATAAAGTGTT.................................................................................26155.338006900001460
..............................................................................................T----GCTGGTC-ACTGTT-GTGGAGG.......................................................................................................................................................2115.0050100003010
....................................................................................................CTGGTC-ACTGTT-GTGGAGGAAATA..................................................................................................................................................2414.0040000000040
.............................................................................................TT----GCTGGTC-ACTGTT-GTGGAGGAAA....................................................................................................................................................2514.0040000002200
.....................................................................TCT--CTACCCTAGA------ACTTT----GCTGGTC-.....................................................................................................................................................................2514.0040000000040
....................................................................................................CTGGTC-ACTGTT-GTGGAGGAAATAG.................................................................................................................................................2514.0040200000020
................................................................................TAGA------ACTTT----GCTGGTC-ACTGTT-G.............................................................................................................................................................2314.0040100000030
.......TA-CCGTAGTGCTTTC---------------------------------CTTCGGCC--..............................................................................................................................................................................................................2393.443103010000000
................TGCTTTC---------------------------------CTTCGGCC--TATTCT--CTACCC................................................................................................................................................................................................2783.252602311000010
................................................................................TAGA------ACTTT----GCTGGTC-ACTGTT-..............................................................................................................................................................2213.0030000000030
..............................................................................................T----GCTGGTC-ACTGTT-GTGGAGGAA.....................................................................................................................................................2313.0030000002010
.............................................................................................TT----GCTGGTC-ACTGTT-GTGGAGG.......................................................................................................................................................2213.0031000002000
.....................................................................................................................................................................TGACTTACAGTGCCTTATAAAGTG...................................................................................24152.133203200000000
..................................................................TATTCT--CTACCCTAGA------ACTTT----GCTG.........................................................................................................................................................................2512.0020000000020
.............................................................................................TT----GCTGGTC-ACTGTT-GTGGA.........................................................................................................................................................2012.0020000002000
..............................................................................................T----GCTGGTC-ACTGTT-GTGGAGGA......................................................................................................................................................2212.0020000001010
............................................................................................................................TAGTGCTTTCTCGAGCATCCGTCGACG.........................................................................................................................2712.0020000000020
....................................................................................................CTGGTC-ACTGTT-GTGGAGGAAAT...................................................................................................................................................2312.0020100000100
.............................................................................................TT----GCTGGTC-ACTGTT-GTGGAGGAA.....................................................................................................................................................2412.0020100001000
.............................................................................................TT----GCTGGTC-ACTGTT-GTGGAGGA......................................................................................................................................................2312.0020000002000
..............................................................................................T----GCTGGTC-ACTGTT-GTGGAGGAAA....................................................................................................................................................2412.0020100001000
.....................................................................TCT--CTACCCTAGA------ACTTT----GCTGGTC-A....................................................................................................................................................................2612.0020000000020
.......................................................................T--CTACCCTAGA------ACTTT----GCTGGTC-AC...................................................................................................................................................................2512.0022000000000
.......................................................................................................................................................................................................................TATTTTCTTTGATGA---------------------------------ACTGCTTAC2412.0020000000020
..................................................................TATTCT--CTACCCTAGA------ACTTT----GC...........................................................................................................................................................................2312.0020100000010
..............................................................................................T----GCTGGTC-ACTGTT-GTGGA.........................................................................................................................................................1912.0020000000020
...............................................................................................................................TGCTTTCTCGAGCATCCGTCGACGG........................................................................................................................25141.862602100000410
.....................................................................................................................................................................TGACTTACAGTGCCTTATAAAGT....................................................................................23151.732602500100000
.....................................................................................................................................................................TGACTTACAGTGCCTTATAAAGTGT..................................................................................25151.472201800012100
.........................................................TTCGGCC--TATTCT--CTACCCTAGA------ACT...................................................................................................................................................................................2611.0010100000000
....................................................................................................CTGGTC-ACTGTT-GTGGAGGAAATG..................................................................................................................................................2411.0010100000000
............................................................................................TTT----GCTGGTC-ACTGTT-GTGG..........................................................................................................................................................2011.0010100000000
..............................................................................................T----GCTGGTC-ACTGTT-GTGG..........................................................................................................................................................1811.0010100000000
.............................................................................................TT----GCTGGTC-ACTGTT-GTGGAGGAAT....................................................................................................................................................2511.0010100000000
................................................................................TAGA------ACTTT----GCTGGTC-ACTGA................................................................................................................................................................2111.0010100000000
......................................................................CT--CTACCCTAGA------ACTTT----GCTGGTC-.....................................................................................................................................................................2411.0010000000010
............................................................................................TTT----GCTGGTC-ACTGTT-GTGGAGG.......................................................................................................................................................2311.0010000001000
.........................................................TTCGGCC--TATTCT--CTACCCTAGA------ACTT..................................................................................................................................................................................2711.0010000000010
....................................................................................................CTGGTC-ACTGTT-GTGGAGG.......................................................................................................................................................1911.0010000000010
.........................................................................................................................................................................................................CCTGCAGCATAGCCTATTTTCTTTGA.............................................2611.0010100000000
................................................................................TAGA------ACTTT----GCTGGTC-ACTGTT-GTGG..........................................................................................................................................................2611.0010000000010
..............................................................................................................................................................................................TTGCCAAGGCACCTGCAGCATAGCC.........................................................2511.0010100000000
..................................................................TATTCT--CTACCCTAGA------ACTT..................................................................................................................................................................................2011.0010000000100
...........................................................................................CTTT----GCTGGTC-ACTGTT-GTGGAG........................................................................................................................................................2311.0010000000010
...........................................................................TACCCTAGA------ACTTT----GCTGGTC-ACT..................................................................................................................................................................2411.0010100000000
...................................................................................................................TGGAGGAAATAGTGCTTTCTCGAGCATC.................................................................................................................................2811.0010000001000
....................................................................................................CTGGTC-ACTGTT-GTGGAGGAAA....................................................................................................................................................2211.0010000001000
..................................................................TATTCT--CTACCCTAGA------ACTTT----GCTGGA.......................................................................................................................................................................2711.0010000000010
..................................................................TATTCT--CTACCCTAGA------ACTTT----GCTGGT.......................................................................................................................................................................2711.0010000000010
..........................................................................................ACTTT----GCTGGTC-ACTGTT-GTGGAGGA......................................................................................................................................................2611.0010000001000
................................................................................TAGA------ACTTT----GCTGGTC-ACTGTT-GTG...........................................................................................................................................................2511.0010000000010
...............................................................................................................................................................................................TGCCAAGGCACCTGCAGCATAGCCTA.......................................................2611.0010100000000
.....................................................................................................TGGTC-ACTGTT-GTGGAGGAAATAGT................................................................................................................................................2511.0010100000000
.....................................................................................................TGGTC-ACTGTT-GTGGAGGAA.....................................................................................................................................................2011.0010000000010
.............................................................................................TT----GCTGGTC-ACTGTT-GTGGAT........................................................................................................................................................2111.0010000001000
..............................................................................................................................................................................................TTGCCAAGGCACCTGCAGCATAG...........................................................2311.0010000000010
...........................................................................TACCCTAGA------ACTTT----GCTGG........................................................................................................................................................................1911.0010000000010
...........................................................................................................................................................................................TGTTTGCCAAGGCACCTGCAGCA..............................................................2311.0010100000000
..................................................................TATTCT--CTACCCTAGA------ACTTT----G............................................................................................................................................................................2211.0010000000010
...........................................................................................CTTT----GCTGGTC-ACTGTT-GTGGAGG.......................................................................................................................................................2411.0010000000010
................TGCTTTC---------------------------------CTTCGGCC--TATTCT--CTACC.................................................................................................................................................................................................2691.0090900000000
..................................................................................................................................................................TGTTGACTTACAGTGCCTTATAAAG.....................................................................................25140.861201000000020
..TGCAGTA-CCGTAGTGCTTTC---------------------------------CTTCGGC.................................................................................................................................................................................................................27100.8080500000300
.....................................................................................................................................................................TGACTTACAGTGCCTTATAAAGTGTTT................................................................................27150.73110700000220
...............................................................................................................................TGCTTTCTCGAGCATCCGTCGAC..........................................................................................................................23140.71100800000020
.......TA-CCGTAGTGCTTTC---------------------------------CTTCGGCC--TAT...........................................................................................................................................................................................................2690.6760600000000
.................GCTTTC---------------------------------CTTCGGCC--TATTCT--CTACCC................................................................................................................................................................................................2680.6350500000000
...............................................................................................................................TGCTTTCTCGAGCATCCGTCGA...........................................................................................................................22140.5780500000030
.................................................................................................................................................................TTGTTGACTTACAGTGCCTTATAAAG.....................................................................................26140.5780700000010
................TGCTTTC---------------------------------CTTCGGCC--TATTCT--CT....................................................................................................................................................................................................23100.5050500000000
.............................................................................................................................................TCCGTCGACGGAGCATACTCTTGT...........................................................................................................2420.5010100000000
...............................................................................................................................TGCTTTCTCGAGCATCCGTCGACGGAGC.....................................................................................................................2820.5010100000000
......................................................................................................................................TCGAGCATCCGTCGACGGAG......................................................................................................................2020.5010000001000
...............................................................................................................................TGCTTTCTCGAGCATCCGTCGACGGAGCA....................................................................................................................2920.5010100000000
.......TA-CCGTAGTGCTTTC---------------------------------CTTCGGC.................................................................................................................................................................................................................22100.5050500000000
...................TTTC---------------------------------CTTCGGCC--TATTCT--CTACCC................................................................................................................................................................................................2480.5040310000000
.......................................................................................................................................CGAGCATCCGTCGACGGAGCATACA................................................................................................................2520.5010100000000
.............................................................................................................................................TCCGTCGACGGAGCATACT................................................................................................................1920.5010100000000
..............................................................................................T----GCTGGTC-ACTGTT-GTGGT.........................................................................................................................................................1920.5010000001000
TGTGCAGTA-CCGTAGTGCTTTC---------------------------------CTT.....................................................................................................................................................................................................................25120.4250500000000
.....................................................................................................................................................................TGACTTACAGTGCCTTATAAAG.....................................................................................22150.4060600000000
..TGCAGTA-CCGTAGTGCTTTC---------------------------------CTTCGGCC--..............................................................................................................................................................................................................2890.3330300000000
......................................................................................................................................................................GACTTACAGTGCCTTATAAAGTGTT.................................................................................25150.3350500000000
.....................TC---------------------------------CTTCGGCC--TATTCT--CTACCCTA..............................................................................................................................................................................................2480.2520200000000
........................................................CTTCGGCC--TATTCT--CTACCCTAG.............................................................................................................................................................................................2380.2520000000020
.........................................................TTCGGCC--TATTCT--CTACCCTA..............................................................................................................................................................................................2180.2520200000000
TGTGCAGTA-CCGTAGTGCTTTC---------------------------------CTTC....................................................................................................................................................................................................................26120.2530300000000
..................CTTTC---------------------------------CTTCGGCC--TATTCT--CTACCC................................................................................................................................................................................................2580.2520200000000
........A-CCGTAGTGCTTTC---------------------------------CTTCGGCC--TA............................................................................................................................................................................................................2490.2220200000000
.......TA-CCGTAGTGCTTTC---------------------------------CTTCGGCC--A.............................................................................................................................................................................................................2490.2220200000000
................TGCTTTC---------------------------------CTTCGGCC--TATTCT--CTA...................................................................................................................................................................................................2490.2220200000000
...............................................................................................................................TGCTTTCTCGAGCATCCGTCG............................................................................................................................21140.2130300000000
......................................................................................................................................................................GACTTACAGTGCCTTATAAAGTG...................................................................................23150.2030300000000
.......TA-CCGTAGTGCTTTC---------------------------------CTTCGG..................................................................................................................................................................................................................21120.1720200000000
TGTGCAGTA-CCGTAGTGCTTTC---------------------------------CT......................................................................................................................................................................................................................24120.1720200000000
..TGCAGTA-CCGTAGTGCTTTC---------------------------------CTTC....................................................................................................................................................................................................................24120.1720200000000
..................................................................................................................................................................TGTTGACTTACAGTGCCTTATAA.......................................................................................23140.1420200000000
...............................................................................................................................TGCTTTCTCGAGCATCCGTC.............................................................................................................................20140.1420200000000
................................................................................................................................GCTTTCTCGAGCATCCGTCGACG.........................................................................................................................23140.1420200000000
....................................................................................................................................................................TTGACTTACAGTGCCTTATAAAGTGTT.................................................................................27150.1320200000000
...................................................................................................................................................................GTTGACTTACAGTGCCTTATAAAG.....................................................................................24150.1320200000000
.........................................................TTCGGCC--TATTCT--CTACCCT...............................................................................................................................................................................................2080.1310100000000
.........................................................TTCGGCC--TATTCT--CTACCCTAG.............................................................................................................................................................................................2280.1310100000000
.....................TC---------------------------------CTTCGGCC--TATTCT--CTACCCTAG.............................................................................................................................................................................................2580.1310100000000
..........................................................TCGGCC--TATTCT--CTACCCTAGA------......................................................................................................................................................................................2280.1310000000100
.....................TC---------------------------------CTTCGGCC--TATTCT--CTACCCTAGA------......................................................................................................................................................................................2680.1310100000000
........A-CCGTAGTGCTTTC---------------------------------CTTCGGCC--TATTCT--C.....................................................................................................................................................................................................2980.1310100000000
..........................................................TCGGCC--TATTCT--CTACCCTAG.............................................................................................................................................................................................2180.1310100000000
........................................................CTTCGGCC--TATTCT--CTACA.................................................................................................................................................................................................1990.1110100000000
.......TA-CCGTAGTGCTTTC---------------------------------CTTCGGCC--TATTC.........................................................................................................................................................................................................2890.1110100000000
................TGCTTTC---------------------------------CTTCGGCC--TATTCT--CTAC..................................................................................................................................................................................................2590.1110100000000
.............TAGTGCTTTC---------------------------------CTTCGGCC--TATTCT--C.....................................................................................................................................................................................................2590.1110100000000
...................TTTC---------------------------------CTTCGGCC--TATTCT--CTACC.................................................................................................................................................................................................2390.1110100000000
........A-CCGTAGTGCTTTC---------------------------------CTTCGGCC--TATTC.........................................................................................................................................................................................................2790.1110100000000
........A-CCGTAGTGCTTTC---------------------------------CTTCGGCC--..............................................................................................................................................................................................................2290.1110100000000
......GTA-CCGTAGTGCTTTC---------------------------------CTTCGGCC--..............................................................................................................................................................................................................2490.1110100000000
..........CCGTAGTGCTTTC---------------------------------CTTCGGCC--TATT..........................................................................................................................................................................................................2590.1110100000000
..............AGTGCTTTC---------------------------------CTTCGGCC--TATTCT--CT....................................................................................................................................................................................................2590.1110100000000
.....AGTA-CCGTAGTGCTTTC---------------------------------CTTCGGCC--..............................................................................................................................................................................................................2590.1110100000000
.......TA-CCGTAGTGCTTTC---------------------------------CTTCGGCC--T.............................................................................................................................................................................................................2490.1110100000000
.....................TC---------------------------------CTTCGGCC--TATTCT--CTACC.................................................................................................................................................................................................2190.1110010000000
.................GCTTTC---------------------------------CTTCGGCC--TATTCT--CTACC.................................................................................................................................................................................................2590.1110100000000
...................TTTC---------------------------------CTTCGGCC--TATTCT--CTA...................................................................................................................................................................................................2190.1110100000000
.............TAGTGCTTTC---------------------------------CTTCGGCC--TATTCT--......................................................................................................................................................................................................2490.1110100000000
.......TA-CCGTAGTGCTTTC---------------------------------CTTCGGCC--TATT..........................................................................................................................................................................................................2790.1110100000000
...GCAGTA-CCGTAGTGCTTTC---------------------------------CTTCGGCC--..............................................................................................................................................................................................................2790.1110100000000
.................GCTTTC---------------------------------CTTCGGCC--TATTCT--CT....................................................................................................................................................................................................22100.1010100000000
TGTGCAGTA-CCGTAGTGCTTTC---------------------------------CTTCGGC.................................................................................................................................................................................................................29100.1010100000000
............GTAGTGCTTTC---------------------------------CTTCGGCC--TATT..........................................................................................................................................................................................................23100.1010100000000
.......TA-CCGTAGTGCTTTC---------------------------------CTTCGGCA--C.............................................................................................................................................................................................................24100.1010100000000
...........CGTAGTGCTTTC---------------------------------CTTCGGCC--..............................................................................................................................................................................................................20100.1010100000000
......................................................................................................................................................................................TAAAGTGTTTGCCAAGGCACC.....................................................................21110.0910100000000
.....................................................................................................................................................................TGACTTACAGTGCCTTATAAAGTGTTTGC..............................................................................29120.0810100000000
....CAGTA-CCGTAGTGCTTTC---------------------------------CTTCG...................................................................................................................................................................................................................23120.0810100000000
TGTGCAGTA-CCGTAGTGCTTTC---------------------------------CC......................................................................................................................................................................................................................24120.0810010000000
...GCAGTA-CCGTAGTGCTTTC---------------------------------CTT.....................................................................................................................................................................................................................22120.0810100000000
.GTGCAGTA-CCGTAGTGCTTTC---------------------------------CT......................................................................................................................................................................................................................23120.0810100000000
..TGCAGTA-CCGTAGTGCTTTC---------------------------------CTTCGG..................................................................................................................................................................................................................26120.0810100000000
..TGCAGTA-CCGTAGTGCTTTC---------------------------------CTTCG...................................................................................................................................................................................................................25120.0810100000000
...GCAGTA-CCGTAGTGCTTTC---------------------------------CTTCG...................................................................................................................................................................................................................24120.0810100000000
TGTGCAGTA-CCGTAGTGCTTTC---------------------------------C.......................................................................................................................................................................................................................23120.0810100000000
.....................................................................................................................................................................TGACTTACAGTGCCTTATAAAGTGTTTG...............................................................................28120.0810100000000
TGTGCAGTA-CCGTAGTGCTTTC---------------------------------CTTCA...................................................................................................................................................................................................................27130.0810100000000
..................................................................................................................................TTTCTCGAGCATCCGTCGACG.........................................................................................................................21140.0710100000000
..................................................................................................................................................................TGTTGACTTACAGTGCCTTATAAAGTGT..................................................................................28140.0710100000000
................................................................................................................................GCTTTCTCGAGCATCCGTCGA...........................................................................................................................21140.0710100000000
...................................................................................................................................TTCTCGAGCATCCGTCGACGA........................................................................................................................21140.0710100000000
...............................................................................................................................TGCTTTCTCGAGCATCCGTCGACGA........................................................................................................................25140.0710100000000
............................................................................................................................................................TACTCTTGTTGACTTACAGTGCCTTA..........................................................................................26140.0710100000000
..................................................................................................................................................................TGTTGACTTACAGTGCCTTATAAAAA....................................................................................26140.0710100000000
.................................................................................................................................................................TTGTTGACTTACAGTGCCTTATA........................................................................................23140.0710100000000
..................................................................................................................................................................TGTTGACTTACAGTGCCTTATAAAGTG...................................................................................27140.0710100000000
............................................................................................................................................................TACTCTTGTTGACTTACAGTGCCTT...........................................................................................25140.0710100000000
................................................................................................................................GCTTTCTCGAGCATCCGTCGACGG........................................................................................................................24140.0710100000000
.....................................................................................................................................................................TGACTTACAGTGCCTTATAAAGTGTC.................................................................................26150.0710010000000
...........................................................................................................................................................................ACAGTGCCTTATAAAGTGT..................................................................................19150.0710100000000
....................................................................................................................................................................TTGACTTACAGTGCCTTATAAA......................................................................................22150.0710000000010
.........................................................................................................................................................................TTACAGTGCCTTATAAAGTG...................................................................................20150.0710100000000
.....................................................................................................................................................................TGACTTACAGTGCCTTATA........................................................................................19150.0710100000000
....................................................................................................................................................................TTGACTTACAGTGCCTTATAAAG.....................................................................................23150.0710100000000
..........................................................................................................................................................................TACAGTGCCTTATAAAGTGTTT................................................................................22150.0710100000000
........................................................................................................................................................................CTTACAGTGCCTTATAAAGTGT..................................................................................22150.0710100000000
droPer2
TGTGAAGTA-CCGTAGTGCTTTC---------------------------------CTTCGGCC--TATTCT--CTACCCTAGA------ACTTT----GCTGGTC-ACTGTT-GTGGAGGAAATGGTGCTTTCTCGAGCATCCGTCGACGGAGCATACTCTTGTTGACTTACAGTGCCTTATAAAGTGTTTGCCAAGGCACCTGCAGCATAGCCTATTTTCTTTGACAA---------------------------------ACTGCTTACSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................................................................................................................................................................................................AAGGCACCTGCAGCATAGCC.........................................................2011.001010000
.........................................................................................................C-ACTGTT-GTGGAGGAAATGGTGCT.............................................................................................................................................2411.001000001
.....................................................................................................................................................................TGACTTACAGTGCCTTATAAAGTGTT.................................................................................26200.65130120001
.....................................................................................................................................................................TGACTTACAGTGCCTTATAAAGTGT..................................................................................25200.408080000
..................................................................................................................................................................TGTTGACTTACAGTGCCTTATAAAG.....................................................................................25200.306060000
................TGCTTTC---------------------------------CTTCGGCC--TATTCT--CTACCC................................................................................................................................................................................................2740.251010000
.................................................................................................................................................................TTGTTGACTTACAGTGCCTTATAAAG.....................................................................................26200.204040000
.......................................................................................................................................................GAGCATACTCTTGTTGACTTACAGTGCC.............................................................................................2860.171010000
.....................................................................................................................................................................TGACTTACAGTGCCTTATAAAGTG...................................................................................24200.153030000
.....................................................................................................................................................................TGACTTACAGTGCCTTATAAAGT....................................................................................23200.102020000
............................................................................................................................TGGTGCTTTCTCGAGCATCCGTCGACG.........................................................................................................................27170.061010000
...................TTTC---------------------------------CTTCGGCC--TATTCT--CTAC..................................................................................................................................................................................................22170.061010000
...............................................................................................................................TGCTTTCTCGAGCATCCGTCGACG.........................................................................................................................24180.061010000
....................................................................................................................................TCTCGAGCATCCGTCGACGG........................................................................................................................20180.061100000
..............AGTGCTTTC---------------------------------CTTCGGCC--TATTC.........................................................................................................................................................................................................22190.051010000
......GTA-CCGTAGTGCTTTC---------------------------------CTTCGT..................................................................................................................................................................................................................22200.051000001
.................................................................................................................................................................TTGTTGACTTACAGTGCCTTATAAA......................................................................................25200.051010000
...........CGTAGTGCTTTC---------------------------------CTTCGG..................................................................................................................................................................................................................18200.051010000
..................................................................................................................................................................TGTTGACTTACAGTGCCTTATAAAGTG...................................................................................27200.051010000
droWil2
AATAAAATTGGTGGATTAA-CTGGTTTATCATTCGTCTCATTCGTCTGC------------TAC--TGCGAT--TTGCTTT---CCTTGTAGTC----CGATGT---CTCGTG-GATTAACGAGTGGTGTATCTGCCTGCACCCATCGACACCACAACTTCGTTTACTTTTGCAATTCCGTATCACGTGCTGATCAAAACAACAATAGCAGAGCCTCTTTTGCCGCACGA---------------------------------ACTCCTTTCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
................TAA-CTGGTTTATCATTCGTCTCATTCGTC..................................................................................................................................................................................................................................2911.00101000
.............................................CTGC------------TAC--TGCGAT--TTGCTTT---CCTTGT......................................................................................................................................................................................2611.00101000
..........................................................................................................................................................................TGCAATTCCGTATCACGTGCTGATC.............................................................................25110.73807010
...........................................................................TGCTTT---CCTTGTAGTC----CGATGT---CTCG.................................................................................................................................................................2670.57403010
.....................................................................................................................TAACGAGTGGTGTATCTGCCTGCAC..................................................................................................................................2520.50100010
...............................................................................................................TG-GATTAACGAGTGGTGTATCTGCC.......................................................................................................................................2520.50100010
...............................................................................................................TG-GATTAACGAGTGGTGTATCTGC........................................................................................................................................2420.50100010
.....................................................................................................................TAACGAGTGGTGTATCTGCCTGCACCCA...............................................................................................................................2820.50101000
.....................................................................................................................TAACGAGTGGTGTATCTGCCTGCACCC................................................................................................................................2720.50101000
..........................................................................................................................................................................TGCAATTCCGTATCACGTGCTGATCA............................................................................26110.45504010
.......................................................................................................................................................................................................CAACAATAGCAGAGCCTCTTTTGC.................................................24190.37703040
..........................................................................................................................................................................TGCAATTCCGTATCACGTGCTGATCAAAA.........................................................................29110.27303000
.........................................................................................................................................TGCACCCATCGACACCACAACTTCGTT............................................................................................................2740.25100010
....................................................................................................................................................................TACTTTTGCAATTCCGTATCACGTGC..................................................................................26100.20201010
..........................................................................................................................................................................TGCAATTCCGTATCACGTGCTGAT..............................................................................24110.18202000
..........................................................................................................................................................................TGCAATTCCGTATCACGTGCTGATCAA...........................................................................27110.18202000
...............................................................................TT---CCTTGTAGTC----CGATGT---CTCGTG-GAT...........................................................................................................................................................2770.14100010
............................................................................................................................TGGTGTATCTGCCTGCACCCATCGACAA........................................................................................................................28140.14202000
............................................................................GCTTT---CCTTGTAGTC----CGATGT---CTCG.................................................................................................................................................................2570.14101000
............................................................................................................................TGGTGTATCTGCCTGCACCCATCGA...........................................................................................................................25150.13202000
...........................................................................TGCTTT---CCTTGTAGTC----CGATGT---CT...................................................................................................................................................................2480.13101000
...............................................................................................................................TGTATCTGCCTGCACCCATCGACAC........................................................................................................................25170.12202000
..................................................................TGCGAT--TTGCTTT---CCTTGTAGTC----CGA...........................................................................................................................................................................2690.11101000
.......................................................................................................................................................................................................CAACAATAGCAGAGCCTCTTTTGCCG...............................................26180.11202000
...........................................................................................................................................................................................TGCTGATCAAAACAACAATAGCAGAGCC.........................................................28200.10202000
.................................................................................................................................................................................................TCAAAACAACAATAGCAGAGCCTCTTT....................................................27200.10201010
..............................................................................................................................................................................................TGATCAAAACAACAATAGCAGAGCCTCT......................................................28200.10201010
...........................................................................................................................................................................GCAATTCCGTATCACGTGCTGATC.............................................................................24110.09101000
..........................................................................................................................................................................TGCAATTCCGTATCACGTGCTGATCAT...........................................................................27110.09101000
..........................................................................................................................................................................TGCAATTCCGTATCACGTGC..................................................................................20120.08100010
..........................................................................................................................................................................TGCAATTCCGTATCACGTGCTGA...............................................................................23120.08101000
........................................................................................................................................................................TTTGCAATTCCGTATCACGTGCTG................................................................................24120.08101000
............................................................................................................................TGGTGTATCTGCCTGCACCCATCGACAC........................................................................................................................28130.08101000
...................................................................................................................................................................................................................AGCCTCTTTTGCCGCACGA---------------------------------ACTCCTT..26140.07101000
.......................................................................................................................................................................................................................TCTTTTGCCGCACGA---------------------------------ACTCCTTTC24140.07101000
...................................................................................................................................................................................................................AGCCTCTTTTGCCGCACGA---------------------------------ACTCCT...25140.07101000
................................................................................................................................................................................TCCGTATCACGTGCTGATCAAAACAACA....................................................................28140.07101000
.............................................................................................................................................................................................................TAGCAGAGCCTCTTTTGCCGCACG...........................................24160.06101000
......................................................................................................................AACGAGTGGTGTATCTGCCTGCACC.................................................................................................................................25160.06101000
.............................................................................................................................................................................................................TAGCAGAGCCTCTTTTGCCGCACGA---------------------------------AC.......27160.06100100
.................................................................................................................................TATCTGCCTGCACCCATCGACACCA......................................................................................................................25160.06101000
.................................................................................................................................TATCTGCCTGCACCCATCGACACCACAA...................................................................................................................28160.06101000
.................................................................................................................................TATCTGCCTGCACCCATCGACACC.......................................................................................................................24160.06101000
.................................................................................................................................TATCTGCCTGCACCCATCGACACCAC.....................................................................................................................26160.06101000
.............................................................................................................................................................................................................TAGCAGAGCCTCTTTTGCCGCACGA---------------------------------ACA......28160.06101000
...............................................................................................................................TGTATCTGCCTGCACCCATCGACACCAC.....................................................................................................................28160.06101000
..............................................................................................................................................................................................................AGCAGAGCCTCTTTTGCCGCACGA---------------------------------ACT......27160.06101000
......................................................................................................................AACGAGTGGTGTATCTGCCTGCACCC................................................................................................................................26160.06101000
.................................................................................................................................TATCTGCCTGCACCCATCGACACCACAAC..................................................................................................................29160.06101000
..................................................................................................................................ATCTGCCTGCACCCATCGACACCA......................................................................................................................24170.06101000
.....................................................................................................................................................................................................AACAACAATAGCAGAGCCTCTTTTGC.................................................26190.05101000
...........................................................................................................................................................................................TGCTGATCAAAACAACAATAGCAGAGCCT........................................................29200.05101000
droVir3
ACAGCCCCA-TTGTTGCTACCTT-------------------------------------GGCCCATGTGCT--CATCTTT---ACTTACGTTC----GTGGTAGG-CGTATG-TAGCAGTACATGGTGCGTTGACTCGCAACCATCCACGTGACATATCTTCTTTGTTTTACACTGTTGTGCAAGATGTCGCATAAAGCAGCAACGGCAGAGCCGCTTTTCCTTGACAA---------------------------------GTTA----CSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droAna3
AAAGAACAG-TGCCGACTCTTTTGTTTCTTCCTTTTTGAGTTCCTCCGAACCGACGTCGAA------------------C-----TTTATCGTA----GGGCGTTC-CGAGTG-CAGAAGCCCATTATGCAGTAATTTACATCCATCAAA-TTACACGG-CTTTTCAATCTGCAGTCTCGAGCAGTATGGTTTCCAAAACAGCAGAAACATAGTCGTTTAGCCTTAATGACTTCTAGTC--------------------------------TSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................................................................................................................................TACATCCATCAAA-TTACACGG-CTTTT...........................................................................................................2611.001100000
.....................................................................................TTTATCGTA----GGGCGTTC-CGAGTG-CA............................................................................................................................................................2590.565500000
........................TTTCTTCCTTTTTGAGTTCCTCCGAA..............................................................................................................................................................................................................................26120.506420000
........................TTTCTTCCTTTTTGAGTTCCTCCGAAC.............................................................................................................................................................................................................................2760.332200000
.....................................................................................TTTATCGTA----GGGCGTTC-CGAGTG-C.............................................................................................................................................................2490.333210000
........................TTTCTTCCTTTTTGAGTTCCTCCGA...............................................................................................................................................................................................................................25130.314400000
........................TTTCTTCCTTTTTGAGTTCCTCCG................................................................................................................................................................................................................................24140.294400000
.....................................................................................TTTATCGTA----GGGCGTTC-CGAGTG-CAG...........................................................................................................................................................2690.222200000
.....................................................................................TTTATCGTA----GGGCGTTC-CGAGTG-CAGA..........................................................................................................................................................2790.222200000
...................................................................................................................................................................................................AAAACAGCAGAAACATAGTCGTTTAGC..................................................27100.202110000
...............................................................................................................................................................................................TTCCAAAACAGCAGAAACATAGTCGTT......................................................27100.202020000
................................................................................................................................................................................................TCCAAAACAGCAGAAACATAGTCGTT......................................................26100.202110000
..................................................CCGACGTCGAA------------------C-----TTTATCGTA----GGGCGT........................................................................................................................................................................2760.171100000
...............................................GAACCGACGTCGAA------------------C-----TTTATCGTA----GG............................................................................................................................................................................2660.171010000
..............................................................................................................................................................................................................AACATAGTCGTTTAGCCTTAATGACC........................................26120.172020000
..................................................CCGACGTCGAA------------------C-----TTTATCGTA----GGGCG.........................................................................................................................................................................2670.141100000
..................................................................................................................................................................................................................TAGTCGTTTAGCCTTAATGACTTCTAGTC--------------------------------.2980.131100000
....................................................GACGTCGAA------------------C-----TTTATCGTA----GGGC..........................................................................................................................................................................2390.111100000
.....................................................................................TTTATCGTA----GGGCGTTC-CGAGTT-..............................................................................................................................................................2390.111100000
...........................................................AA------------------C-----TTTATCGTA----GGGCGTTC-CGAG.................................................................................................................................................................2490.111010000
.......................................................................................TATCGTA----GGGCGTTC-CGAGTG-..............................................................................................................................................................2190.111100000
...................................................CGACGTCGAA------------------C-----TTTATCGTA----GGGC..........................................................................................................................................................................2490.111100000
.............................................................................................................................TATGCAGTAATTTACATCCATCAAA-.........................................................................................................................25100.101100000
.....................................................................................................................................................................................................................TCGTTTAGCCTTAATGACTTCTAGTC--------------------------------.26100.101100000
..............................................................................................................................................................................................TTTCCAAAACAGCAGAAACATAGTCG........................................................26100.101001000
...............................................................................................................................................................................................TTCCAAAACAGCAGAAACATAGTCGT.......................................................26100.101010000
...............................................................................................................................................................................................TTCCAAAACAGCAGAAACATAGTCGTTA.....................................................28100.101010000
...................................................................................................................................................................................................AAAACAGCAGAAACATAGTCGTTTAGCCC................................................29100.101010000
...............................................................................................................................................................................................TTCCAAAACAGCAGAAACATAGTCG........................................................25100.101001000
................................................................................................................................................................................................TCCAAAACAGCAGAAACATAGTCGTTT.....................................................27100.101010000
...................................................................................................................................................................................GAGCAGTATGGTTTCCAAAACAGCAGA..................................................................27110.091100000
.......................................................................................................................................................................................AGTATGGTTTCCAAAACAGCAGAAACA..............................................................27110.091010000
....................................................................................................................................................................................AGCAGTATGGTTTCCAAAACAGCAGA..................................................................26110.091001000
.....................................................................................................................................................................................GCAGTATGGTTTCCAAAACAGCAGAAACA..............................................................29110.091100000
.....................................................................................................................................................................................GCAGTATGGTTTCCAAAACAGCAGAAA................................................................27110.091100000
......................................................................................................................................................................................CAGTATGGTTTCCAAAACAGCAGAAACA..............................................................28110.091100000
.......................................................................................................................................................................................AGTATGGTTTCCAAAACAGCAGAAAC...............................................................26110.091010000
..............................................................................................................................................................................................................AACATAGTCGTTTAGCCTTAATGACT........................................26120.081010000
.................TCTTTTGTTTCTTCCTTTTTGAGT.......................................................................................................................................................................................................................................24130.081010000
....................TTTGTTTCTTCCTTTTTGAGTTCCC...................................................................................................................................................................................................................................25140.071010000
......................TGTTTCTTCCTTTTTGAGTTCCTCC.................................................................................................................................................................................................................................25140.071010000
..................................................................................................................................................................................................................TAGTCGTTTAGCCTTAATGACTTC......................................24140.071010000
.................................................................................................................................................................................TCGAGCAGTATGGTTTCCAAAACAGC.....................................................................26150.071010000
..................................................................................................................................................................................CGAGCAGTATGGTTTCCAAAACAGC.....................................................................25150.071100000
droBip1
TGTGCAAAG-TTGTTGCGCTTTC---------------------------------TTCTGAAT--TGTTGTAACTTCTTTGAA------GCTTTCTCAGGTCATC-TTGGTG-GGGAAGGCAATGGTGTTTTCTAGTGCATCCATTTACACCACCTACTCGTGACGATTTGCAGTGTCTTATGTTGTTTCTATCTACGCATCTCCAGCATATCTATCTTTTATGTCTAA---------------------------------ATTGTT--TSizeHit CountTotal NormTotal
No Reads
droKik1
GTTATTATA-TCGCTAGTTTTCT-------------------TCTCTTG--------------T--TCGACC--TGGTCCTCGT------TCTCA----ACTCGCTCCAAGTG-TGGAACCTTATTGTGCTGTAACTTGCATCCATTGACATTGCAAGTCTTCTTTACTCTACAGTTCCGATCAATATGCTTCCCAAAGCAACAGAAGCATAGTCGTTTTGCCTTTATTATGTCCAATCTAG-------ACTTGATTGAC---ATTGCCAAASizeHit CountTotal NormTotal
No Reads
droFic1
TATAAAAAC-CGATAGCG-----------------------------------------AACCG--TGTTGT--CTGTTCT---GTTTACCAAA----TGAAAATC-TGTTTT-CAGGAGAAAGTTGTACTTTCTCGT-------------------ACTTTCGATGACCTGCAGTGTCTTATAAAATGTTATCCATAGTATCATTAACATAGTTAGCATTCTATGAAAAAG---------------------------------TTC---TSizeHit CountTotal NormTotal
No Reads
droEle1
AATTCTCTG-C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
TCGGATTTC-CTGCCATT-----------------------------------------GGTTC--TGTTTT--CAGCTCT---GTTTACATTT----TGATTTTC-GTTGCAAAAGGAGAAAATTGTGCTTTGTCGTACATAAATCTACGGAACAGTTTCGTGATGCTCTGCAATGTCGTATGAGGTGTTTG-TAAAGCATCTCGAGCACAATTTTCTTTCATTTATGA---------------------------------A--------SizeHit CountTotal NormTotal
No Reads
droTak1
TATGCAAAA-CGGGTTCGCTGTC---------------------------------ATTTGTCC--TGTTTT--CAGCTCT---GCTTACATTT----TGATTTCC-GTTGTG-AAGGAGAAAATTGTGCTTTCTCGTACATCCATCCACGGAACAGTTTCGTGATGCTCTGCAATGTCGTATGAAGTGTTTTCCAAAGCATCTCCAGCACAATCTGCTCTCCTTTATGAAATTCCATCTATCGTGCACGCTTAAGGCACGAAATTCTCTGCSizeHit CountTotal NormTotal
No Reads
droYak3
AGAGAACTG-GCGAAACGACTAA---------------------------------TGTTTCCT--TATCGT---------ATC------GTTTG----ATAAATA-AGCGTG-AAGCAGAGCGTGGCGAATTCTC-TACAGTCGTCCAATCCGCAACTCTTTCTGGATCTGCAGTTCCGAACTGCGTGTGGCCGCAGGCAGCAATAGCATACATTTCTAGTTCTCACGAAA---------------------------------TCC---CSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................................................................................................................ATTCTC-TACAGTCGTCCAATCCGCAAC..................................................................................................................2711.00101000000000

Generated: 05/15/2015 at 02:22 PM