ID:

dps_610

 Coordinate:

2:17795008-17795089 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-15.8 -15.7 -15.6 -15.5

Flybase annnotation

exon [Dpse\GA27310:1]; CDS [Dpse\GA27310-cds]; CDS [Dpse\GA27310-cds]; exon [Dpse\GA27310:2]; intron [Dpse\GA27310-in]

No Repeatable elements found

mature
star
  1. Unknown_group_74:16509-16534 +
  2. Unknown_group_1:50116-50141 +
  3. Unknown_group_94:47641-47666 +
  4. XL_group1e:483082-483107 +
  5. Unknown_group_20:34007-34032 +
  6. dps_610  2:17795010-17795035 +
  7. Unknown_group_361:261-286 +
  8. 4_group3:1335199-1335224 +
  9. Unknown_group_280:4017-4042 +
  10. 4_group4:4553752-4553777 +
  11. 4_group4:5953169-5953194 +
  12. Unknown_group_472:2027-2052 +
  13. Unknown_singleton_2035:1375-1400 +
  14. Unknown_group_399:6635-6660 +
  15. Unknown_singleton_1128:1249-1274 +
  16. Unknown_singleton_225:1053-1078 +
  17. Unknown_singleton_1119:1758-1783 +
  18. Unknown_singleton_3475:2078-2103 +
  19. Unknown_singleton_3025:1291-1316 +
  20. Unknown_singleton_3886:1145-1170 +
  21. Unknown_singleton_2664:4060-4085 +
  22. Unknown_singleton_2960:862-887 +
  23. Unknown_group_536:8882-8907 +
  24. Unknown_group_358:3671-3696 +

Sense Strand Reads

------------------------##########################----------------------------------------------------------------------------------##################################################
CCGGTATGGACCTTCGGGCCAAATATGGAGGCTGAAAGTAGCAAGCACGGGTTGGGATGTCAACCCAAACGTCGGTGGAAAGCGGGACTGCTACAGTTGTAATACTACTGTCACAAAAACGACGCGTTGCAGGGTGATCCGCGCGGGTGCCGTTGTCGACGCAGACTGGGACCCGGAGAGCG
****************************************************....((((............((((((.......(((((...)))))......)))))).............))))******************************************************* 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902010
ovaries
 SRR902011
testis
 GSM343916
embryo
 M059
embryo
 SRR902012
CNS imaginal disc
 GSM444067
head
 V112
male body
.........................TGGAGGCTGAAAGTAGCAAGCACGGG................................................................................................................................... 26 0 1 3.00 3 0 2 1 0 0 0 0 0
............................................................................................................TGTCACAAAAACGACGCGT....................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................GGTCGAAACCGGGACTGCTGCA....................................................................................... 22 3 2 1.00 2 2 0 0 0 0 0 0 0
....................................................................................................................................................GCCGTTGTCGACGCAGACTGGGAC.......... 24 0 1 1.00 1 1 0 0 0 0 0 0 0
.......................TATGGAGGCTGAAAGTAGCAAGCACGGG................................................................................................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0
...............................................................................................................................TGCAGGGTGATCCGCGCGGG................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0
....................................................................................................................................................GCCGTTGTCGACGCAGACTGGG............ 22 0 1 1.00 1 1 0 0 0 0 0 0 0
....................................................TGGGATGTCAACCCAAACGTCGGTGG........................................................................................................ 26 0 20 0.55 11 4 6 1 0 0 0 0 0
......................................................................................................................................TGATCCGAGCGGGTGCAGT............................. 19 2 2 0.50 1 1 0 0 0 0 0 0 0
........................................................................................................................................ATCCGGGCGCGGGCCGTTGT.......................... 20 3 3 0.33 1 0 0 0 1 0 0 0 0
.....................................TTAGCAAGCACGGGTTGGGATG........................................................................................................................... 22 1 3 0.33 1 0 0 0 0 1 0 0 0
.........................................................TGTCAACCCAAACGTCGGTGGAAAGC................................................................................................... 26 0 20 0.25 5 5 0 0 0 0 0 0 0
....................................................TGGGATGTCAACCCAAACGTCGG........................................................................................................... 23 0 20 0.25 5 0 0 4 1 0 0 0 0
........................................................................CGGTCGAAACCGGGACTGCTG......................................................................................... 21 3 4 0.25 1 1 0 0 0 0 0 0 0
.........................................................TGTCAACCCAAACGTCGGTG......................................................................................................... 20 0 20 0.20 4 4 0 0 0 0 0 0 0
....................................................TGGGATGTCAACCCAAACGTCG............................................................................................................ 22 0 20 0.20 4 0 4 0 0 0 0 0 0
.....................................................GGGATGTCAACCCAAACGTCGG........................................................................................................... 22 0 20 0.20 4 4 0 0 0 0 0 0 0
...............................................................................................................................TGCAGGGTGAACCGCGCGG.................................... 19 1 13 0.15 2 2 0 0 0 0 0 0 0
...................................................TTGGGATGTCAACCCAAACGTCGGTG......................................................................................................... 26 0 20 0.15 3 0 3 0 0 0 0 0 0
...................................................................................................TAAGACTAGTGTCAGAAAAA............................................................... 20 3 7 0.14 1 1 0 0 0 0 0 0 0
............................................................................CGAAAACGAGACTGCTACAG...................................................................................... 20 3 8 0.13 1 0 0 0 0 1 0 0 0
..........................................................................................................ACTGACACAAAAACGACGCGTTG..................................................... 23 1 10 0.10 1 1 0 0 0 0 0 0 0
.........................................................TGTCAACCCAAACGTCGGTGGAAAG.................................................................................................... 25 0 20 0.10 2 0 1 0 0 0 0 0 1
............................................................................CGAAACCGGGACTGCTGCAG...................................................................................... 20 3 11 0.09 1 0 0 0 0 0 1 0 0
...............................................................................................................................TGCAGGGTGAACCGCGCGGGTGCCG.............................. 25 1 12 0.08 1 1 0 0 0 0 0 0 0
...............................................................................................................................TGCAGGGTGAACCGCGCGGGTGT................................ 23 2 12 0.08 1 0 0 0 1 0 0 0 0
................................................................................................................................GCAGGGTGAACCGCGCGGGTGC................................ 22 1 12 0.08 1 1 0 0 0 0 0 0 0
...............................................................................................................................TGCAGGGTGAACCGCGCGGGTA................................. 22 2 13 0.08 1 0 0 0 1 0 0 0 0
..........................................................................................................................CGCGTTGCAGGGTGAACCGCGAGGA................................... 25 3 14 0.07 1 0 0 0 1 0 0 0 0
......TGGACCTTCGGGCCAAATATGGAGG....................................................................................................................................................... 25 0 15 0.07 1 0 1 0 0 0 0 0 0
.CGGTATGGACCTTCGGGC................................................................................................................................................................... 18 0 17 0.06 1 1 0 0 0 0 0 0 0
.................................................................................................................................CGGGGTGATCCGCGTGGGG.................................. 19 3 17 0.06 1 0 0 0 0 0 0 1 0
..........................................................GTCAACCCAAACGTCGGTGGA....................................................................................................... 21 0 20 0.05 1 1 0 0 0 0 0 0 0
.........................................CAAGCACGGGTTGGGATGTCAAC...................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0 0 0 0
..........................................AAGCACGGGTTGGGATGTCA........................................................................................................................ 20 0 20 0.05 1 1 0 0 0 0 0 0 0
.........................................CAAGCACGGGTTGGGATGTCAACC..................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0 0 0 0
.........................................................TGTCTACCCAAACGTCAGTG......................................................................................................... 20 2 20 0.05 1 1 0 0 0 0 0 0 0
..........................................................GTCAACCCAAACGTCGGTGGAAAGCG.................................................................................................. 26 0 20 0.05 1 1 0 0 0 0 0 0 0

Anti-sense strand reads

GGCCATACCTGGAAGCCCGGTTTATACCTCCGACTTTCATCGTTCGTGCCCAACCCTACAGTTGGGTTTGCAGCCACCTTTCGCCCTGACGATGTCAACATTATGATGACAGTGTTTTTGCTGCGCAACGTCCCACTAGGCGCGCCCACGGCAACAGCTGCGTCTGACCCTGGGCCTCTCGC
*******************************************************....((((............((((((.......(((((...)))))......)))))).............))))**************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902011
testis
 SRR902010
ovaries
 M059
embryo
 V112
male body		 M062
head
 GSM343916
embryo
.............................................................................CTTTCGCCCTGACGATGTCAACATT................................................................................ 25 0 1 7.00 7 7 0 0 0 0 0 0
...............................................................................TTCGCCCTGACGATGTCAACATT................................................................................ 23 0 1 3.00 3 0 1 2 0 0 0 0
............................................................................................................................................CGCGCCCACGGCAACAGCTGCGTCT................. 25 0 5 2.80 14 13 0 0 0 1 0 0
..........................................................................CACCTTTCGCCCTGACGATGTCAACAT................................................................................. 27 0 1 2.00 2 0 2 0 0 0 0 0
..........................................................................................................................................GGCGCGCCCACGGCAACAGCTGCGTCT................. 27 0 4 1.25 5 3 0 2 0 0 0 0
...............................................................................TCCGCCCTGACGATGTCAACATT................................................................................ 23 1 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................................................AGGCGCGCCCACGGCAACAGCTGCGTCT................. 28 0 1 1.00 1 1 0 0 0 0 0 0
....................................TCATCGTTCGTGCCCAACCCTACAGT........................................................................................................................ 26 0 2 1.00 2 2 0 0 0 0 0 0
........................................................................................................................................TAGGCGCGCCCACGGCAACAGCTGCGT................... 27 0 1 1.00 1 1 0 0 0 0 0 0
............................................................................CCTTTCGCCCTGACGATGTCAACATT................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0
.............................................................................CTTTCGCCCTGACGATGTCAACAT................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0
...........................................................................ACCTTTCGCCCTGACGATGTCAACATT................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0
............................................................................CCTTTCGCCCTGACGATGTCAACAT................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................................................................GGCGCGCCCACGGCAACAGCTGCGT................... 25 0 4 1.00 4 4 0 0 0 0 0 0
...............................................................................................................GTGTTTTTGCTGCGCAACGTCCCACTA............................................ 27 0 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................................................CGCGCCCACGGCAACAGCTGCGT................... 23 0 5 0.80 4 2 0 0 1 1 0 0
..............................................................................................................................................CGCCCACGGCAACAGCTGCGTCT................. 23 0 5 0.60 3 3 0 0 0 0 0 0
GGCCATACCTGGAAGCCCGGTTTAT............................................................................................................................................................. 25 0 14 0.57 8 4 0 2 1 0 0 1
..........................................................................................................................................GGCGCGCCCACGGCAACAGC........................ 20 0 9 0.56 5 5 0 0 0 0 0 0
...........................................................................................................................................GCGCGCCCACGGCAACAGCTGCGT................... 24 0 4 0.50 2 2 0 0 0 0 0 0
.............................................................................................................................................GCGCCCACGGCAACAGCTGCGTCT................. 24 0 5 0.40 2 2 0 0 0 0 0 0
..............................................................................................................................................CGCCCACGGCAACAGCTGCGT................... 21 0 5 0.40 2 1 0 0 0 0 1 0
...........................................................................................................................................GCGCGCCCACGGCAACAGC........................ 19 0 9 0.33 3 3 0 0 0 0 0 0
.........................................................................................................................................AGGCGCGTCCACGGCAACAGCTGCGT................... 26 1 3 0.33 1 0 1 0 0 0 0 0
.................................................................................................................GTTTTTGCTGCGCAACGTCCCACT............................................. 24 0 12 0.25 3 2 0 0 0 1 0 0
..........................................................................................................................................GGCGCGCCCACGGCAACAGCTGCGTC.................. 26 0 4 0.25 1 1 0 0 0 0 0 0
........................................................................................................................................TTGGCGCGCCCACGGCAACAGCTGCGT................... 27 1 4 0.25 1 1 0 0 0 0 0 0
.........................................................................................................................................AGGCGCGCCCACGGCAACAGCTACGT................... 26 1 4 0.25 1 1 0 0 0 0 0 0
...............................................................GGGTTTGCAGCCACCTTTC.................................................................................................... 19 0 20 0.25 5 5 0 0 0 0 0 0
...........................................................................................................................................GCGCGCCCACGGCAACAGCT....................... 20 0 9 0.22 2 2 0 0 0 0 0 0
............................................................................................................................................CGCGCCCACGGCAACAGCTTCGTCT................. 25 1 9 0.22 2 2 0 0 0 0 0 0
..........................................................................................................................................GGCGCGCCCACGGCAACAGCT....................... 21 0 9 0.22 2 2 0 0 0 0 0 0
.......................................................CTACAGTTGGGTTTGCAGCCACCTTT..................................................................................................... 26 0 20 0.20 4 4 0 0 0 0 0 0
..............GCCCGGTTCATACCTCCGACT................................................................................................................................................... 21 1 5 0.20 1 1 0 0 0 0 0 0
............................................................................................................................................CGCGCCCACAGCAACAGCTGCG.................... 22 1 5 0.20 1 1 0 0 0 0 0 0
...............................................................................................................GTGTTTTTGCTGCGCAACGTCCCACT............................................. 26 0 10 0.20 2 2 0 0 0 0 0 0
......ACCTGGAAGCCCGGTTTATACCTCCGACT................................................................................................................................................... 29 0 5 0.20 1 1 0 0 0 0 0 0
.......................................TCGTTCGTGCCCAACCCTACAGT........................................................................................................................ 23 0 20 0.20 4 4 0 0 0 0 0 0
..........GGAAGCCCGGTTTATACCTCCGACT................................................................................................................................................... 25 0 5 0.20 1 1 0 0 0 0 0 0
............................................................................................................................................CGCGCCCACGGCAACAGCTGCG.................... 22 0 5 0.20 1 1 0 0 0 0 0 0
............................................................................................................................................CGCGCCCACGGCAACAGCTGCGTC.................. 24 0 5 0.20 1 1 0 0 0 0 0 0
............................................................................................................................................TGCGCCCACGGCAACAGCTGCGT................... 23 1 6 0.17 1 1 0 0 0 0 0 0
...............................................................................................................................................GCCCACGGCAACAGCTGCGTCT................. 22 0 6 0.17 1 1 0 0 0 0 0 0
...........................................TCGTGCCCAACCCTACAGT........................................................................................................................ 19 0 20 0.15 3 3 0 0 0 0 0 0
................................................................GGTTTGCAGCCACCTTTCG................................................................................................... 19 0 20 0.15 3 2 0 0 1 0 0 0
............................................................GTTGGGTTTGCAGCCACCTTTCGC.................................................................................................. 24 0 20 0.15 3 3 0 0 0 0 0 0
GGCCATACCTGGAAGCCCGGTT................................................................................................................................................................ 22 0 15 0.13 2 2 0 0 0 0 0 0
....................................................................................................................TTTGCTGCGCAACGTCCCACT............................................. 21 0 15 0.13 2 2 0 0 0 0 0 0
..CCATACCTGGAAGCCCGGTTT............................................................................................................................................................... 21 0 16 0.13 2 2 0 0 0 0 0 0
.........................................................................................................................................TGGCGCGCCCACGGCAACAGCTTCGT................... 26 2 8 0.13 1 1 0 0 0 0 0 0
..........................................................................................................................................GGCGCGCCCACGGCAACAGCTTCGTCT................. 27 1 8 0.13 1 0 0 0 1 0 0 0
...........................................................................................................................................GCGCGCCCACGGCAACAGCTTCGTC.................. 25 1 8 0.13 1 1 0 0 0 0 0 0
.........................................................................................................................................TGGCGCGCCCACGGCAACAGC........................ 21 1 9 0.11 1 1 0 0 0 0 0 0
.........TGGAAGCCCGGTTTATACCT......................................................................................................................................................... 20 0 18 0.11 2 2 0 0 0 0 0 0
..........................................................................................................................................TGCGCGCCCACGGCAACAGC........................ 20 1 9 0.11 1 1 0 0 0 0 0 0
...................................................................................................................................................ACGGCAACAGCTGCGTCTGA............... 20 0 10 0.10 1 1 0 0 0 0 0 0
.............................................................TTGGGTTTGCAGCCACCTT...................................................................................................... 19 0 20 0.10 2 2 0 0 0 0 0 0
................................................................GGTTTGCAGCCACCTTTC.................................................................................................... 18 0 20 0.10 2 2 0 0 0 0 0 0
...........................................................AGTTGGGTTTGCAGCCACCTTTC.................................................................................................... 23 0 20 0.10 2 0 0 2 0 0 0 0
.........................................GTTCGTGCCCAACCCTACAGT........................................................................................................................ 21 0 20 0.10 2 2 0 0 0 0 0 0
..........................................................................................................................................GGCGCGCCCACGGCAACAG......................... 19 0 10 0.10 1 1 0 0 0 0 0 0
..........................................................CAGTTGGGTTTGCAGCCACCTTTCG................................................................................................... 25 0 20 0.10 2 2 0 0 0 0 0 0
...............................................................................................................GTGTTTTTGCTGCGCAACGTCCC................................................ 23 0 10 0.10 1 1 0 0 0 0 0 0
.............................................................................................GTCAACATCATGATGACTGTGTTTTTGCT............................................................ 29 2 11 0.09 1 1 0 0 0 0 0 0
.........................................................................................................................................TTGCGCGCCCACGGCAACAG......................... 20 2 11 0.09 1 1 0 0 0 0 0 0
............................................................................................................................GCAACGTCCCACTTGGCGCGCCCAC................................. 25 1 11 0.09 1 1 0 0 0 0 0 0
..................................................................................................................................................AACGGCAACAGCTGCGTCT................. 19 1 11 0.09 1 1 0 0 0 0 0 0
.................................................................................................................GTTTTTGCTGCGCAACGTCCCAC.............................................. 23 0 12 0.08 1 1 0 0 0 0 0 0
................................................................................................................TGTTTTTGCTGCGCAACGTCCCACT............................................. 25 0 12 0.08 1 0 0 0 0 1 0 0
.....TACCTGGAAGCCCGGTTTATACCTCC....................................................................................................................................................... 26 0 14 0.07 1 1 0 0 0 0 0 0
...............................................................................................CAACATCATGATGACTGTGTTT................................................................. 22 2 14 0.07 1 1 0 0 0 0 0 0
....................................................................................................................TTTGCTGCGCAACGTCCCATT............................................. 21 1 15 0.07 1 1 0 0 0 0 0 0
.GCCATACCTGGAAGCCCGGTTTAT............................................................................................................................................................. 24 0 15 0.07 1 1 0 0 0 0 0 0
.....TACCTGGAAGCCCGGTTTATACCT......................................................................................................................................................... 24 0 16 0.06 1 1 0 0 0 0 0 0
.....................................................................................................................TTGCTGCGCAACGTCCCACT............................................. 20 0 16 0.06 1 1 0 0 0 0 0 0
GGCCATACCTGGAAGCCCGGT................................................................................................................................................................. 21 0 16 0.06 1 1 0 0 0 0 0 0
........CTGGAAGCCCGGTTTATACCT......................................................................................................................................................... 21 0 17 0.06 1 1 0 0 0 0 0 0
......ACCTGGAAGCCCGGTTTATAC........................................................................................................................................................... 21 0 18 0.06 1 1 0 0 0 0 0 0
..............................................AGCATAACCCTACAGTTGGGTTTGCAGCCACCTT...................................................................................................... 34 3 20 0.05 1 0 0 1 0 0 0 0
........................................................................GCCACCTTTCGCTCTGACGAT......................................................................................... 21 1 20 0.05 1 1 0 0 0 0 0 0
...........................................ACGTGCCCAACCCTACAGT........................................................................................................................ 19 1 20 0.05 1 1 0 0 0 0 0 0
......................................................CCTACAGTTGGGTTTGCAGGCACCT....................................................................................................... 25 1 20 0.05 1 0 0 0 1 0 0 0
....................................................ACCCTACAGTTGGGTTTGCAGCCAC......................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0 0
..............................................................TGGGTTTGCAGCCACCTTTCTC.................................................................................................. 22 1 20 0.05 1 0 0 0 1 0 0 0
..............................................................AGGGTTTGCAGCCACCTTT..................................................................................................... 19 1 20 0.05 1 1 0 0 0 0 0 0
.....................................................CCCTACAGTTGGGTTTGCAGCCACCTT...................................................................................................... 27 0 20 0.05 1 1 0 0 0 0 0 0
..........................................................CAGTTGGGTTTGCAGCCACCTTT..................................................................................................... 23 0 20 0.05 1 1 0 0 0 0 0 0
................................................................GGTTTGCTGCCACCTTTCGCTCT............................................................................................... 23 2 20 0.05 1 0 0 0 0 0 0 1
.......................................TTGTTCGTGCCCAACCCTACAGT........................................................................................................................ 23 1 20 0.05 1 1 0 0 0 0 0 0
......................................................CCTACACTTGGGTTTGCAGCCAC......................................................................................................... 23 1 20 0.05 1 0 0 0 1 0 0 0
.......................................TCGTTCGTGCCCAACCCTACAG......................................................................................................................... 22 0 20 0.05 1 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 2:17794958-17795139 + dps_610 CCGGTATGGACCTTCGGGCCAAATATGGAGGCTGA-AAGTAGCAAGCACGGGTTGGGATGTCA--------ACCCAAACGTCGGTGGAAAGCGGGACTGCTACA----------------------------------------------------------------------------------GTTGTAATACTACTGTCACAAAAACGACGCGTTGCAGGGTGATCCGCGCGGGTGCCGTTGTCGACGCAGACTGGGACCCGGAGAGCG
droPer2 scaffold_600:1519-1690 + CCGGTATGGACCTTCGGGCCAAATATGAAGGCAGATAAGGAGCAAGCACGGGTTGGTATGTAA--------ACCCACACGTCGGTGGAAAGCGTGACTGCTACAACTG---------------------------------------------------------------------------------------------CCACTAAAACGACGCGTTGCAGGGTGAGCCGCGCGGGTGCCGTTGTCGACGCAGACTCGGACCTGGAGAGCG
droWil2 scf2_1100000004961:2378076-2378248 - CAA---TGGACGTACG----------------GAAAACAAATCCAACTCGGGCTGGGATATCAGCCCTTCAGCCCAAACGTCTATAGAAGAAATGCCCACTGC-----------------------------------GTCTCG----CGGTCATCCCTCTGTT-------------GCCGTGATGGTTGTAGAACTACTG---CCAAACTTACGCGG---------------AGCAATGCTGAAGTCCTAGGAGACATGGG-----------
droVir3 scaffold_12963:5334425-5334500 + TCGAAATG-------------------GATGTCAATATAGAAACAAATCGGGCTGGGATATCA--------GTCCAAACGTCGGTGGAAGAAGTGATCGCTAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000301666:44689-44828 + CCACTCTG-------------------GAGAGTTTAAAGGATGAAACCAGGGATGGGATGTCA--------GCCCAAACGTCGGTGGAAGGCGTGACCGCTACCACCGACCGGCACGGTAGCGAG----------------------------------------------------------------------------------------------------CAATCCTCT------GCGTAGTCGATACAGACTCGGACCTTGAGAGCG
droEle1 scf7180000490212:15059-15281 - CAAGTATG-------------------GAAGCGAAAAATAAATCAACCGGGGCTGGGATATCA--------GCCCAAACGACGGTGGAAGGCGTGTCTGCTACCACCGGCGGGCACGGGGAGGAGCAATCTTCTCTGCGTGTCGGCAGCGATCACACCTCTGAAATGAAGGGAGCAGGTCTTATTAGTTGTAACGCTTC-----------------------GGATAAGCCGCACAAATGCCATAGTCGAAGAAGACTCGGACCTAAAGAGCG
droBia1 scf7180000301698:29320-29404 - CAGCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAATGCTACTGTCTT---GGCGTCTCAGGCAACGTTTAGTCGCACGGG-GCCGTTCTTGAAGTAGACTCCGGCTCGGAGAGCG
droTak1 scf7180000412366:385-582 - CCAGT------------------------------------------------------------------------ACGTCGGTGGGAAGTACGACTGCTACCATCGGCGGGCACGGGGAGGAGCAATCCACTCTGCGTGTCGCCAGCGGTCGAACCCCTGGGATGGCGGGAGCAGGTCATTACAGCGGCAATGTTACTGCCAT---AACATCTCAGACAAAGTTAAGCCGTACGGGTGCCGTAGTTGTAGTAGACTCGGACTCGGAGAGCG
droYak3 v2_chrUn_4652:13841-14021 + CCAAGAGTT--CTTTGTG--A--AATGGACAACAAAAACAGCTCAACCCGGGCTGGGATGTCA--------GCCCAAACGTCGGTGGAAAGCGTGACTGCTACCACGGG---------------------------------------CACGGAGCGC---------------------------------------ACGGGCACAGCAACGACTCAAGGGAGGCTAAGCCGCTCAGGTGCTATAGTCGATACAGACTTGGACCTGGAGAGCG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
CCGGTATGGACCTTCGGGCCAAATATGGAGGCTGA-AAGTAGCAAGCACGGGTTGGGATGTCA--------ACCCAAACGTCGGTGGAAAGCGGGACTGCTACA----------------------------------------------------------------------------------GTTGTAATACTACTGTCACAAAAACGACGCGTTGCAGGGTGATCCGCGCGGGTGCCGTTGTCGACGCAGACTGGGACCCGGAGAGCGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................TGGAGGCTGA-AAGTAGCAAGCACGGG.............................................................................................................................................................................................................................2613.0030000000210
.......................................................................................................................................................................................................TGTCACAAAAACGACGCGT.......................................................1911.0010100000000
...............................................................................................................................................................................................................................................GCCGTTGTCGACGCAGACTGGGAC..........2411.0010100000000
.......................TATGGAGGCTGA-AAGTAGCAAGCACGGG.............................................................................................................................................................................................................................2811.0010000000010
..........................................................................................................................................................................................................................TGCAGGGTGATCCGCGCGGG...................................2011.0010100000000
...............................................................................................................................................................................................................................................GCCGTTGTCGACGCAGACTGGG............2211.0010100000000
.....................................................TGGGATGTCA--------ACCCAAACGTCGGTGG..........................................................................................................................................................................................26200.55110400000610
..........................................................TGTCA--------ACCCAAACGTCGGTGGAAAGC.....................................................................................................................................................................................26200.2550500000000
.....................................................TGGGATGTCA--------ACCCAAACGTCGG.............................................................................................................................................................................................23200.2550000100040
..........................................................TGTCA--------ACCCAAACGTCGGTG...........................................................................................................................................................................................20200.2040400000000
.....................................................TGGGATGTCA--------ACCCAAACGTCG..............................................................................................................................................................................................22200.2040000000400
......................................................GGGATGTCA--------ACCCAAACGTCGG.............................................................................................................................................................................................22200.2040400000000
....................................................TTGGGATGTCA--------ACCCAAACGTCGGTG...........................................................................................................................................................................................26200.1530000000300
..........................................................TGTCA--------ACCCAAACGTCGGTGGAAAG......................................................................................................................................................................................25200.1020000001100
......TGGACCTTCGGGCCAAATATGGAGG..................................................................................................................................................................................................................................................25150.0710000000100
.CGGTATGGACCTTCGGGC..............................................................................................................................................................................................................................................................18170.0610100000000
...........................................................GTCA--------ACCCAAACGTCGGTGGA.........................................................................................................................................................................................21200.0510100000000
..........................................CAAGCACGGGTTGGGATGTCA--------AC........................................................................................................................................................................................................23200.0510100000000
...........................................AAGCACGGGTTGGGATGTCA--------..........................................................................................................................................................................................................20200.0510100000000
..........................................CAAGCACGGGTTGGGATGTCA--------ACC.......................................................................................................................................................................................................24200.0510100000000
...........................................................GTCA--------ACCCAAACGTCGGTGGAAAGCG....................................................................................................................................................................................26200.0510100000000
droPer2
CCGGTATGGACCTTCGGGCCAAATATGAAGGCAGATAAGGAGCAAGCACGGGTTGGTATGTAA--------ACCCACACGTCGGTGGAAAGCGTGACTGCTACAACTG---------------------------------------------------------------------------------------------CCACTAAAACGACGCGTTGCAGGGTGAGCCGCGCGGGTGCCGTTGTCGACGCAGACTCGGACCTGGAGAGCGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......................................................................................GAAAGCGTGACTGCTACAACTG---------------------------------------------------------------------------------------------C.......................................................................2311.001010000
.............................................................................................TGACTGCTACAACTG---------------------------------------------------------------------------------------------CCACTAAAACGA............................................................2711.001010000
...............................CAGATAAGGAGCAAGCACGGGTTG..........................................................................................................................................................................................................................24170.76130110002
...............................CAGATAAGGAGCAAGCACGGG.............................................................................................................................................................................................................................21170.417070000
...............................CAGATAAGGAGCAAGCACGGGT............................................................................................................................................................................................................................22170.356060000
................................................................................................................................................................................................................................................CCGTTGTCGACGCAGACTCGGACCTG.......26100.202020000
................................................................................................................................................................................................................................................CCGTTGTCGACGCAGACTCG.............20160.193030000
...............................CAGATAAGGAGCAAGCACGG..............................................................................................................................................................................................................................20180.173030000
....................................AAGGAGCAAGCACGGGTTGG.........................................................................................................................................................................................................................20200.153030000
...............................CAGATAAGGAGCAAGCACGGGTTGG.........................................................................................................................................................................................................................25170.122020000
.....................................................................................................................................................................................................................CGCGTTGCAGGGTGAGCCGCGCGGG...................................25200.102020000
..........................................................................................................................................................................................................................TGCAGGGTGAGCCGCGCGGGTG.................................22200.102020000
..........................................................................................................................................................................................................................TGCAGGGTGAGCCGCGCGGGTGCCG..............................25200.102011000
..............................................................................................................................................................................................................................................TGCCGTTGTCGACGCAGAC................19160.061010000
...............................CAGATAAGGAGCAAGCACGGGTTA..........................................................................................................................................................................................................................24170.061010000
...............................CAGATAAGGAGCAAGCACGGGTT...........................................................................................................................................................................................................................23170.061010000
...............................CAGATAAGGAGCAAGCACG...............................................................................................................................................................................................................................19180.061010000
.........................................................................................................................................................................................................................TTGCAGGGTGAGCCGCGCGGG...................................21200.051010000
..................................................................................................................................................................................................................CGACGCGTTGCAGGGTGAGCCG.........................................22200.051000001
.CGGTATGGACCTTCGGGCCA............................................................................................................................................................................................................................................................20200.051010000
................................................................................................................................................................................................................AACGACGCGTTGCAGGGTTT.............................................20200.051000001
..........................................................................................................................................................................................................................TGCAGGGTGAGCCGCGCGGGTGCCGT.............................26200.051000001
..........................................................................................................................................................................................................................TGCAGGGTGAGCCGCGCGGGTGC................................23200.051010000
.CGGTATGGACCTTCGGGCCAAAT.........................................................................................................................................................................................................................................................23200.051010000
.CGGTATGGACCTTCGGGCCAA...........................................................................................................................................................................................................................................................21200.051010000
....................................AAGGAGCAAGCACGGGTTG..........................................................................................................................................................................................................................19200.051010000
............................................................................................................................................................................................................................................................CAGACTCGGACCTGGAGAGA.20200.051010000
...................................TAAGGAGCAAGCACGGGTTG..........................................................................................................................................................................................................................20200.051010000
...................................................................................................................................................................................................................GACGCGTTGCAGGGTGAGCCG.........................................21200.051010000
...................................TAAGGAGCAAGCACGGGTTGG.........................................................................................................................................................................................................................21200.051010000
..........................................................................................................................................................................................................................TGCAGGGTGAGCCGCGCGG....................................19200.051010000
....................................................................................................................................................................................................................ACGCGTTGCAGGGTGAGCCGC........................................21200.051010000
CCGGTATGGACCTTCGGGC..............................................................................................................................................................................................................................................................19200.051010000
droWil2
CAA---TGGACGTACG----------------GAAAACAAATCCAACTCGGGCTGGGATATCAGCCCTTCAGCCCAAACGTCTATAGAAGAAATGCCCACTGC-----------------------------------GTCTCG----CGGTCATCCCTCTGTT-------------GCCGTGATGGTTGTAGAACTACTG---CCAAACTTACGCGG---------------AGCAATGCTGAAGTCCTAGGAGACATGGG-----------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................................................................................................................................TCTCG----CGGTCATCCCTCTGTT-------------GCCG............................................................................................2511.00101000
droVir3
TCGAAATG-------------------GATGTCAATATAGAAACAAATCGGGCTGGGATATCA--------GTCCAAACGTCGGTGGAAGAAGTGATCGCTAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................................TAGAAACAAATCGGGCTGGGATA.....................................................................................................................................................................................................................2312.002000000000000000000000000000011000000000000000000000000000000000
......................................................GGGATATCA--------GTCCAAACGTCGGT............................................................................................................................................................................................2311.001000000010000000000000000000000000000000000000000000000000000000
.....................................TAGAAACAAATCGGGCTGGGAT......................................................................................................................................................................................................................2211.001000000000000000000000000000010000000000000000000000000000000000
droKik1
CCACTCTG-------------------GAGAGTTTAAAGGATGAAACCAGGGATGGGATGTCA--------GCCCAAACGTCGGTGGAAGGCGTGACCGCTACCACCGACCGGCACGGTAGCGAG----------------------------------------------------------------------------------------------------CAATCCTCT------GCGTAGTCGATACAGACTCGGACCTTGAGAGCGSizeHit CountTotal NormTotal
No Reads
droEle1
CAAGTATG-------------------GAAGCGAAAAATAAATCAACCGGGGCTGGGATATCA--------GCCCAAACGACGGTGGAAGGCGTGTCTGCTACCACCGGCGGGCACGGGGAGGAGCAATCTTCTCTGCGTGTCGGCAGCGATCACACCTCTGAAATGAAGGGAGCAGGTCTTATTAGTTGTAACGCTTC-----------------------GGATAAGCCGCACAAATGCCATAGTCGAAGAAGACTCGGACCTAAAGAGCGSizeHit CountTotal NormTotal
No Reads
droBia1
CAGCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAATGCTACTGTCTT---GGCGTCTCAGGCAACGTTTAGTCGCACGGG-GCCGTTCTTGAAGTAGACTCCGGCTCGGAGAGCGSizeHit CountTotal NormTotal
No Reads
droTak1
CCAGT------------------------------------------------------------------------ACGTCGGTGGGAAGTACGACTGCTACCATCGGCGGGCACGGGGAGGAGCAATCCACTCTGCGTGTCGCCAGCGGTCGAACCCCTGGGATGGCGGGAGCAGGTCATTACAGCGGCAATGTTACTGCCAT---AACATCTCAGACAAAGTTAAGCCGTACGGGTGCCGTAGTTGTAGTAGACTCGGACTCGGAGAGCGSizeHit CountTotal NormTotal
No Reads
droYak3
CCAAGAGTT--CTTTGTG--A--AATGGACAACAAAAACAGCTCAACCCGGGCTGGGATGTCA--------GCCCAAACGTCGGTGGAAAGCGTGACTGCTACCACGGG---------------------------------------CACGGAGCGC---------------------------------------ACGGGCACAGCAACGACTCAAGGGAGGCTAAGCCGCTCAGGTGCTATAGTCGATACAGACTTGGACCTGGAGAGCGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
............................................................................................................................................................................................................CAGCAACGACTCAAGGGAGGCTAAGC...........................................2611.00101000000000
.....................................................TGGGATGTCA--------GCCCAAACGTCGGTGG..........................................................................................................................................................................................2640.25101000000000

Generated: 05/17/2015 at 10:51 PM