ID:

dps_61

 Coordinate:

XL_group1e:8367504-8367571 -

 Confidence:

confident

 Class:

Testes-restricted

 Genomic Locale:

intergenic

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-26.1 -26.0 -26.0

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

AGAACATTTTTTTTTAAATACTGTTTCGATTCAATCTATCTCTTTTTGCTAATGATCTTCCAGTTGTACATAATTTAGATTTGGTTTAAAAGAAATGTGTATTGCTAAGATCATCAGTAAATCGAGACAATTCGCTACAAAGATATGACAACTCAACCAATCAATTAG

***********************************...((((..((((((.((((((((..(((.(((((((.(((((((...))))))).....))))))).))))))))))).))))))..)))).....************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR902011

testis

 M040

female body

 V112

male body		 GSM444067

head

 M059

embryo

 SRR902010

ovaries

 GSM343916

embryo

 M062

head

 SRR902012

CNS imaginal disc

 M022

male body
..................................................AATGATCTTCCAGTTGTACATAATT............................................................................................. 25 0 1 34.00 34 18 3 0 1 5 2 3 0 2 0
..................................................AATGATCTTCCAGTTGTACATAA............................................................................................... 23 0 1 25.00 25 17 1 0 0 0 7 0 0 0 0
...............................................................................................TGTGTATTGCTAAGATCATCAG................................................... 22 0 1 21.00 21 12 2 6 1 0 0 0 0 0 0
.............................................................................................AATGTGTATTGCTAAGATCATC..................................................... 22 0 1 19.00 19 2 3 0 3 7 0 2 2 0 0
..................................................AATGATCTTCCAGTTGTACATA................................................................................................ 22 0 1 16.00 16 13 1 2 0 0 0 0 0 0 0
..................................................AATGATCTTCCAGTTGTACAT................................................................................................. 21 0 1 15.00 15 13 1 0 1 0 0 0 0 0 0
...............................................................................................TGTGTATTGCTAAGATCATCA.................................................... 21 0 1 15.00 15 2 5 5 1 0 0 2 0 0 0
..................................................AATGATCTTCCAGTTGTACATAAT.............................................................................................. 24 0 1 12.00 12 6 4 0 0 1 0 0 0 0 1
...............................................................................................TGTGTATTGCTAAGATCATC..................................................... 20 0 1 8.00 8 0 2 3 2 0 0 1 0 0 0
..................................................AATGATCTTCCAGTTGTACATAATTCC........................................................................................... 27 2 1 7.00 7 7 0 0 0 0 0 0 0 0 0
..................................................AATGATCTTCCAGTTGTACATAAA.............................................................................................. 24 1 1 6.00 6 6 0 0 0 0 0 0 0 0 0
..................................................AATGATCTTCCAGTTGTACATAATTC............................................................................................ 26 1 1 6.00 6 6 0 0 0 0 0 0 0 0 0
..................................................AATGATCTTCCAGTTGTACATAATTCCC.......................................................................................... 28 3 1 4.00 4 4 0 0 0 0 0 0 0 0 0
..............................................................................................ATGTGTATTGCTAAGATCATC..................................................... 21 0 1 4.00 4 0 3 1 0 0 0 0 0 0 0
..................................................AATGATCTTCCAGTTGTACA.................................................................................................. 20 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0
..................................................AATGATCTTCCAGTTGTAC................................................................................................... 19 0 1 4.00 4 3 0 1 0 0 0 0 0 0 0
.............................................................................................AATGTGTATTGCTAAGATCAT...................................................... 21 0 1 3.00 3 0 1 1 1 0 0 0 0 0 0
..................................................AATGATCTTCCAGTTGTACATAATCCC........................................................................................... 27 3 1 3.00 3 3 0 0 0 0 0 0 0 0 0
..................................................AATGATCTTCCAGTTGTACATAAAA............................................................................................. 25 2 1 3.00 3 3 0 0 0 0 0 0 0 0 0
..................................................AATGATCTTCCAGTTGTAA................................................................................................... 19 1 1 3.00 3 2 1 0 0 0 0 0 0 0 0
.............................................................................................AATGTGTATTGCTAAGATCA....................................................... 20 0 1 3.00 3 0 0 2 1 0 0 0 0 0 0
....................................................TGATCTTCCAGTTGTACATAATT............................................................................................. 23 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0
.............................................................................................AATGTGTATTGCTGGGATCATC..................................................... 22 2 1 3.00 3 0 0 0 1 0 0 0 2 0 0
..................................................AATGATCTTCCAGTTGTACATAATTCTC.......................................................................................... 28 3 1 3.00 3 3 0 0 0 0 0 0 0 0 0
...................................................ATGATCTTCCAGTTGTACAT................................................................................................. 20 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0
...................................................ATGATCTTCCAGTTGTACATAATT............................................................................................. 24 0 1 2.00 2 0 1 0 0 0 0 0 1 0 0
...............................................................................................TGTGTATTGCTGGGATCATCA.................................................... 21 2 1 2.00 2 0 1 0 1 0 0 0 0 0 0
.............................................................................................AATGTGTATTGCTAAGATCATCA.................................................... 23 0 1 2.00 2 0 1 0 0 0 0 1 0 0 0
..................................................AATGATCTTCCAGTTGTACATAATTA............................................................................................ 26 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0
..................................................AATGATCTTCCAGTTGTACATAATA............................................................................................. 25 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0
.............................................................................................AATGTGTATTGCTAGGATC........................................................ 19 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..................................................AACGATCTTCCAGTTGTACATAATT............................................................................................. 25 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..................................................AATGATCTTCCAGTTGTCCCTA................................................................................................ 22 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...........................................................................................GCTTTGTGTATTGCTAAGATCATCA.................................................... 25 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................AATGTGTATTGCTAAGATT........................................................ 19 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...............................................................................................TGTGTATTGCTAGGATCATCA.................................................... 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.............................................................................................AATGTGTATTGCTACGATCAT...................................................... 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..................................................AGTGATCTTCCAGTTGTACATAATCC............................................................................................ 26 3 1 1.00 1 0 0 0 0 0 0 0 1 0 0
..................................................AATGATCTTCCAGTTGTACATC................................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................AATGATCTTCCAGTTGTAAA.................................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................AACGATCTTCCAGTTGTAC................................................................................................... 19 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0
................................................................................TTGGTTTAAAAGAAATGTGTATTGC............................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................AATGTGTATTGCTAAGATCATCT.................................................... 23 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..................................................AATGATCTTCCAGTTGTACATAATCT............................................................................................ 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................AATGTGTATTGCTAAGATCATCCCT.................................................. 25 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..................................................AATGATCTTCCAGTTGTACATGA............................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................AACGTGTATTGCTGGGATCATC..................................................... 22 3 1 1.00 1 0 0 0 0 0 0 0 1 0 0
...............................................................................................TGTGTATCGCTAAGATCATCAG................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................AATGATCTTCCAGTTGTACATAATTTTC.......................................................................................... 28 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................TGTGTATTGTTAAGATCATCC.................................................... 21 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..................................................AATGATCTTCCAGTTGTACT.................................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................TGTGTATTGCTAAGATCAT...................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................AATGTGTATTTCTGGGATCATC..................................................... 22 3 3 0.33 1 0 0 0 1 0 0 0 0 0 0
..................................................GATGATTTTCCAGTTGTACCT................................................................................................. 21 3 4 0.25 1 0 1 0 0 0 0 0 0 0 0
...........................................................................GAGAGTTGGTTTAAAGGAAA......................................................................... 20 3 17 0.06 1 0 1 0 0 0 0 0 0 0 0
.............................................................AGATGTACTAAATTTAGATT....................................................................................... 20 3 19 0.05 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................TTTGACAACTCAACAATTCA..... 20 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0
........................................................CTTACAGCTGTACATAATTG............................................................................................ 20 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0
............................................................................AGATTTGGTTTAAAAAAAAA........................................................................ 20 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

TCTTGTAAAAAAAAATTTATGACAAAGCTAAGTTAGATAGAGAAAAACGATTACTAGAAGGTCAACATGTATTAAATCTAAACCAAATTTTCTTTACACATAACGATTCTAGTAGTCATTTAGCTCTGTTAAGCGATGTTTCTATACTGTTGAGTTGGTTAGTTAATC

************************************...((((..((((((.((((((((..(((.(((((((.(((((((...))))))).....))))))).))))))))))).))))))..)))).....*********************************** 		Read size # Mismatch Hit Count Total Norm Total M040

female body
..................................................................................................................................................CTGTTGAGTTGTTAAGTTA... 19 2 5 0.20 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
dp5 XL_group1e:8367454-8367621 - dps_61 confident AGAACATTTTT-----TTTTAAATACTGTTTCGATTCAATCTATCTCTTTTTGCTAATGATCTTCCAGTTGTACATAATTTAGATTTGGTTTAAAAGAAATGTGTATTGCTAAGATCATCAGTAAATCGAGACAATTCGCTACAA-AGATATGACAACTCAACCAATCAATTAG
droPer2 scaffold_13:196869-197027 + AGAACATTTTTTTTTTTTTTAAATAC---------------TATCTCTTTTTGCTAATAATCTTGCAGTTTTACATGATTTAGATTTGGATTAAAACAAATGTGTATTGCTAAGATCATCAGTAAATCGAGACAATTCGCTACAAAAGATATGTCAATTCAACCAATCAATTAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
AGAACATTTTT-----TTTTAAATACTGTTTCGATTCAATCTATCTCTTTTTGCTAATGATCTTCCAGTTGTACATAATTTAGATTTGGTTTAAAAGAAATGTGTATTGCTAAGATCATCAGTAAATCGAGACAATTCGCTACAA-AGATATGACAACTCAACCAATCAATTAGSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
.......................................................AATGATCTTCCAGTTGTACATAATT..............................................................................................25134.003403503102182
.......................................................AATGATCTTCCAGTTGTACATAA................................................................................................23125.002501000007170
....................................................................................................TGTGTATTGCTAAGATCATCAG....................................................22121.002102000160120
..................................................................................................AATGTGTATTGCTAAGATCATC......................................................22119.00190372230020
.......................................................AATGATCTTCCAGTTGTACATA.................................................................................................22116.001601000020130
.......................................................AATGATCTTCCAGTTGTACAT..................................................................................................21115.001501000100130
....................................................................................................TGTGTATTGCTAAGATCATCA.....................................................21115.00150500215020
.......................................................AATGATCTTCCAGTTGTACATAAT...............................................................................................24112.00121410000060
....................................................................................................TGTGTATTGCTAAGATCATC......................................................2018.0080200123000
.......................................................AATGATCTTCCAGTTGTACATAATTCC............................................................................................2717.0070000000070
.......................................................AATGATCTTCCAGTTGTACATAAA...............................................................................................2416.0060000000060
.......................................................AATGATCTTCCAGTTGTACATAATTC.............................................................................................2616.0060000000060
.......................................................AATGATCTTCCAGTTGTACATAATTCCC...........................................................................................2814.0040000000040
...................................................................................................ATGTGTATTGCTAAGATCATC......................................................2114.0040300001000
.......................................................AATGATCTTCCAGTTGTACA...................................................................................................2014.0040000000040
.......................................................AATGATCTTCCAGTTGTAC....................................................................................................1914.0040000001030
..................................................................................................AATGTGTATTGCTAAGATCAT.......................................................2113.0030100011000
.......................................................AATGATCTTCCAGTTGTACATAATCCC............................................................................................2713.0030000000030
.......................................................AATGATCTTCCAGTTGTACATAAAA..............................................................................................2513.0030000000030
.......................................................AATGATCTTCCAGTTGTAA....................................................................................................1913.0030100000020
..................................................................................................AATGTGTATTGCTAAGATCA........................................................2013.0030000012000
.........................................................TGATCTTCCAGTTGTACATAATT..............................................................................................2313.0030000000030
.......................................................AATGATCTTCCAGTTGTACATAATTCTC...........................................................................................2813.0030000000030
........................................................ATGATCTTCCAGTTGTACAT..................................................................................................2012.0020100000010
........................................................ATGATCTTCCAGTTGTACATAATT..............................................................................................2412.0020101000000
..................................................................................................AATGTGTATTGCTAAGATCATCA.....................................................2312.0020100100000
.......................................................AATGATCTTCCAGTTGTACATAATTA.............................................................................................2612.0020000000020
.......................................................AATGATCTTCCAGTTGTACATAATA..............................................................................................2512.0020000000020
..................................................................................................AATGTGTATTGCTAAGATT.........................................................1911.0010000010000
.......................................................AATGATCTTCCAGTTGTACATC.................................................................................................2211.0010000000010
.....................................................................................TTGGTTTAAAAGAAATGTGTATTGC................................................................2511.0010000000010
..................................................................................................AATGTGTATTGCTAAGATCATCT.....................................................2311.0010000010000
.......................................................AATGATCTTCCAGTTGTACATAATTTTC...........................................................................................2811.0010000000010
.......................................................AATGATCTTCCAGTTGTACT...................................................................................................2011.0010000000010
....................................................................................................TGTGTATTGCTAAGATCAT.......................................................1911.0010000000010
droPer2
AGAACATTTTTTTTTTTTTTAAATAC---------------TATCTCTTTTTGCTAATAATCTTGCAGTTTTACATGATTTAGATTTGGATTAAAACAAATGTGTATTGCTAAGATCATCAGTAAATCGAGACAATTCGCTACAAAAGATATGTCAATTCAACCAATCAATTAGSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
No Reads

Generated: 10/20/2015 at 10:31 PM