ID:

dps_601

 Coordinate:

2:17205272-17205422 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-15.9 -15.7 -15.2

Flybase annnotation

five_prime_UTR [Dpse\GA27302-u5]; CDS [Dpse\GA27302-cds]; exon [Dpse\GA27302:1]; intron [Dpse\GA27302-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAAAGCAAATGAAATGTCGTCTGTTGGTTAGTCGAGTGGTGGGGGAATCCTGGGCGAAATATATATATTATACGGAAAAAGTATTATATGCATATGTAGACATATGTATATCCGTTCGACTGTGTGTGTGTGCGACAGTTTGTATGACGAGGCTCATGCGGTTATTGGACAATGTTCGGGCTAAAAATTTATTGAT
******************************************************************************.......(((.((.(((......))))).)))........(((((.((((.......)))).)))))((((((....))))))..**************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 V112
male body		 GSM343916
embryo
 M059
embryo
 SRR902011
testis
 GSM444067
head
.........................................................................................................................................................................................................................TATTGGACAATGTTCGGGC............... 19 0 1 2.00 2 0 0 0 0 2 0
.............................................................................................................................................TATGCATATGTAGACATATGTA........................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0
...................TAACCAAAATGGCACAGGTCT................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
..............................................................................TTGGTTAGTCGAGTGGTGGG......................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0
............................TGGCACAGGTCTAGAGCAGCAAGT....................................................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0
.................ATTAACCAAAATGGCACAGGT..................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
...................TAACCAAAATGGCACAGGTCTAGAGCA............................................................................................................................................................................................................. 27 0 1 1.00 1 0 1 0 0 0 0
......................................................................................................................................................................CCGTTCGACTGTGTGTGTGTG................................................................ 21 0 1 1.00 1 1 0 0 0 0 0
...........................ATGGCACAGGACTAGAGCAGC........................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0
................................................................TGAAATGTCGTCTGTTGGTT....................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................ATTATATGCATATGTAGAC............................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0
.............................GGCACAGGTCTAGAGCACCAAG........................................................................................................................................................................................................ 22 1 1 1.00 1 0 1 0 0 0 0
................................................................................................................................................................................................GTTTGTATGACGAGGCTCATG...................................... 21 0 1 1.00 1 0 1 0 0 0 0
........................................................................................................................................................................................................................TTATTGGACAATGTTCGGGC............... 20 0 1 1.00 1 0 0 0 0 1 0
....................AACCAAAATGGCACCGGTCTA.................................................................................................................................................................................................................. 21 1 1 1.00 1 0 0 0 1 0 0
.................ATTAACCAAAATGGCACAGGTCTA.................................................................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0
......................................................................GTCGTCTGTTGGTTGGTCGAG................................................................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0
..........................AATGGCACAGGTCTAGAGCAG............................................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0
....................AACCAAAATGGCACAGGTCTAGAGCAGC........................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................................................................................................................................TTATTGGACGGTGTTCGGGCT.............. 21 2 1 1.00 1 1 0 0 0 0 0
.......................CAAAAGGGCACAGGACTAGAGCA............................................................................................................................................................................................................. 23 2 1 1.00 1 0 0 1 0 0 0
................TATTAACCAAAATGGCACAGGTCTAGAG............................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0
.........................AAATGGCACAGGTCTAGAGC.............................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 1 0 0
...........................AGGGCACAGGTCTAGAGCAGC........................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 1 0 0
................................................................TGAAATGTCGTCTGTTGGT........................................................................................................................................................................ 19 0 1 1.00 1 0 1 0 0 0 0
...............................CACAGGTCTAAAGCAGCA.......................................................................................................................................................................................................... 18 1 1 1.00 1 0 0 1 0 0 0
.....................ACCAAAATGGCACAGGTCTAGAGCAGCA.......................................................................................................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0
.............................................................................................................................................TATGCATATGTAGACATGTGT......................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0
..............................................................................TTGGTTAGTCGAGTGGTGG.......................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................AAGTCTTAGATGCATCTGTAG................................................................................................. 21 3 3 0.33 1 1 0 0 0 0 0
..................................................................................TTGGTCGAGTGGTGGGGGGA..................................................................................................................................................... 20 2 3 0.33 1 0 0 0 0 0 1
...............................................................................TGGTTGGCCGAGTGGTGGG......................................................................................................................................................... 19 2 4 0.25 1 0 0 0 0 0 1
ATAATATGAGTAAGGATAGT....................................................................................................................................................................................................................................... 20 3 11 0.18 2 1 1 0 0 0 0
................................................................................GGATAGTCGAGTGGTGGT......................................................................................................................................................... 18 2 9 0.11 1 1 0 0 0 0 0
.....................................................................................................ATCCTGGGCGAAATCACT.................................................................................................................................... 18 3 20 0.05 1 0 1 0 0 0 0

Anti-sense strand reads

TATTATACTCATTACGATAATTGGTTTTACCGTGTCCAGATCTCGTCGTTCATTCATTTCGTTTACTTTACAGCAGACAACCAATCAGCTCACCACCCCCTTAGGACCCGCTTTATATATATAATATGCCTTTTTCATAATATACGTATACATCTGTATACATATAGGCAAGCTGACACACACACACGCTGTCAAACATACTGCTCCGAGTACGCCAATAACCTGTTACAAGCCCGATTTTTAAATAACTA
****************************************************************************************.......(((.((.(((......))))).)))........(((((.((((.......)))).)))))((((((....))))))..****************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 M062
head
 GSM444067
head
 GSM343916
embryo
............................................................................................CCGCCCCCTTAGGACCCGCTTT......................................................................................................................................... 22 1 1 1.00 1 0 1 0 0
.....................................................................................CAGCTCACCACCCCCTTAGGA................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0
..............................CGTGTCCAGATCTCGTCGTTC........................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0
.................................GTCCAGATCTCGTCGTTCAT...................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0
.......................................................................................................................TATACTATCCCTTTTTCTTAAT.............................................................................................................. 22 3 5 0.20 1 0 0 1 0
...................................................................................................................................................................................................ACATACTGCTCGGAATACC..................................... 19 3 7 0.14 1 0 0 0 1
...............................................................................................................................................................AAAAAAAGGCAAGCTGACAC........................................................................ 20 3 20 0.10 2 2 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 2:17205222-17205472 + dps_601 ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAA---AGCAAATG--------------------------------------AAATGTCGTCTGTTGGTTAGTCGAGTGGTGGGGGAATCCTGGGCGAAAT-A---TATA---------TATT----------A--------TACGG----AAA-A-AGTA---TTA--------------------TATGCATATGTAGAC----ATATGTATATCC----------------------------------------------GTT-------CGACTG--TGTG------------TG----TGTGCGACAGTTTGTA-TGACGAGGCTCATGCGGT-----------TATTG--G-----ACAATG----TTCGG------G--CT------AAAAA------------TTTATTGAT
droPer2 scaffold_0:11043346-11043600 + dpe_476 ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAA---AGCAAATG--------------------------------------AAATGTCGTCTGTTGGTTAGTCGAGTGGTGGGGGAATCCTGGGCGAAAT-A---TATA---------TATT----------A--------TACGG----AAA-A-AGTA---TTA--------------------TATGCATATGTAGACATATGTATGTATATCC----------------------------------------------GTT-------CGACTG--TGTG------------TG----TGTGCGACAGTTTGTA-TGACGAGGCTCATGCGGT-----------TATTG--G-----ACAATG----TTCGG------G--CT------AAAAA------------TTTATTGAT
droWil2 scf2_1100000004943:8768672-8768728 + ATAATATGAGTAATGCTAT---CCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---AG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12855:8162773-8163080 + dvi_4447 ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAT---GGAACTTG------TGTATGTGTGCGTGTGTTTGTGTGTGAATGTAAAATGTGGTGC---------------GGT-------------GCAAAAG-AGGGTATA---------TAAT----------G--------GAAGA----AAA-A-AAAAC-GTAATGGTA---------------CA----TTT------------GTGCATATGT------------GTGTTAGCTGTGTCAGCTAAAAGTGGTTC----T-GTGT----GT------------GAG--------TGGCCATGTGTGAAAGAG----TCGGCGATGCTCATGCGGTCCGCACACGATTATTG--A-----ACAGTG----TTCAGT-GAGGG--CT------CTAACTTTTTTTTTTTTTTTATTGAT
droMoj3 scaffold_6540:23396479-23396773 + ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAT---TGTACTTG------TATATGTG------------------AATGTAAAATGTGGTTT---------------GGT-------------GCAAAAT-AGGGTACA---------TAAT----------------------GG----AAAAAAA--------ATG-TACATTTACCTTTGGTGTATT----TGTG--------TGTGTGTATGT------------GTGTTAGCTGTGTCAGCTAAAAGTGTGTC----T-TTGT----GT------------GAG--------TGTGCATGTGTGAAAGAG----TCGGCGATGCTCATGCGGTCTGCACACGATTATTG--A-----ACAGTG----TTCAGTCGAG--TTCTA----AAAAAATT-------TTTTTTATTGAT
droGri2 scaffold_15074:4770948-4771241 + ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAT---GGCGGATACATCCGTGGATGTGAATGTGGATGTCGTTGT---------------------GAATGTTCAAGTGCT-------------ACAATAGAAGGGTACA---------TAAT------G-G-A---TAAAA----AGAAG-AA-A-AAAACAGTAATG-TACATGTAGCGTTGCTACAC----------------GTGTGTGTGTGT-------------------------------------------------GA----GT----GCGTGTGTG----------TG----TGTGTGAAAGTG----TCTGTGATGCTCATGTGGT-----------TATATTGTGA---ACACCGATTCTTCACTCGAGGGTTCCACAAAAAAAAA------------TTTATTGAT
droAna3 scaffold_13340:18721712-18721873 - ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---TAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATGTGTACA--------TATATATA-----TTG-------------------------------CCATG-TGTGT----GT----G--TGTGTGTGTGTTTGAGTG------------------------TGAGTGACATGCGGC-----------TGTTG--G-----AGAGTG----TTCGG---------CT------AAAAA------------TTTATTGAT
droBip1 scf7180000395652:448726-448879 + ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---TAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATGTGTACATAT--ATATATATTG----------------------------------------C-----CATGT----GT----G----TGTGTG--------TG--------------------TGCGTGAGTGACATGCGGC-----------TGTTG--G-----AGAGTG----TTCGG---------CT------AAAAA------------TTTATTGAT
droKik1 scf7180000302690:122135-122315 - ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAA---AGTGA--G-A--------------------------------------------------------------------------GGG-GTGGA-----------AATA-----TACT----------A---CACAT----GAAA--AA-A-AGTA-----ATG--------------------T----------TCAACTATATGTATATC-------------------------------------------------TGA----GTGAGTG--TGTG------------TG--------------------TGTGTG------ATGCGGC-----------TAGTG--G-----ACAATG----TTCGG---------CT------AAAAA------------TTTATTGAT
droFic1 scf7180000454106:2680440-2680624 + ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---AGTTAATA-A--------------------------------------------------------------------------CTG-GTGAA-----------AATA-------------TTAC--A---TATAG----A-AAGAAA-A-ACTA--------------------------C--------------------TTGTATATAC----------------------------------------------AGTGA----GT----GCATGTGTGTG--------TG--------------------TGAGTGATGCTCATGCGGC-----------TATTG--G-----AAAAAG----TTCGG---------CT------AGAAA-----------TTTTATTGAT
droEle1 scf7180000491212:1325922-1326113 + ATAATATGAGTAATGCTATCAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---AGTTATAA-A--------------------------------------------------------------------------GTG-GTGAA-----------AATACA---TACTACATATA-C-A---TATAT----ATAAG-AA-A-AGTA--------------------------CA----------------------TATATAC----------------------------------------------AATGA----GT----GAGTGCGTGTG--------TG--------------------TGAGTGATGCTCATGCGGC-----------TATTG--G-----AAAAAG----TTCGG---------CT------AGAAA------------TTTATTGAT
droRho1 scf7180000778820:16948-17131 + ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---AGTTATCA-----------------------------------------------------------------------------TA-GTGAA-----------AATAAA---TA------CTA-C-A---TATAT----ATAGG-AA-A-AATA--------------------------CA----------------------TATATAC----------------------------------------------AGTGA----AT----GAGTGCGTGTG--------TG--------------------TGAGTGATGCTCATGCGGC-----------TATTG--G-----AAAAAG----TTCGG---------CT------AGAAA------------TTTATTGAT
droBia1 scf7180000302402:7188891-7189115 - ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---AGTTTTTA-A--------------------------------------------------------------------------CTGGGCGAA-----------AATGCC---------C-------GTCTTCTAT----ATAGG-AA-A-AGTA--------------------------CG----TATGTGTGCACCT--ATGTACATGCACACACGCGGGC--------------------------------G-AGTGAGTAATT----GCGTGCGTGTG--------TG--------------------TGCGTGATGCTCATGCGGC-----------TGTTGGGGGAAAAAAAAAG----TTCGG---------CT------AGAAA------------TTTATTGAT
droTak1 scf7180000415417:547950-548152 - ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---AGTTTTTG-A--------------------------------------------------------------------------CTGGGTGAA-----------AATACC---------GTCTAC--------TAC----ATAAGAAA-A-AGTA--------------------------TA----TATGTAC------GCATGTATATGC----------------------------------------------AGTGAGTAAGT----GCGTGCGTGTG--------TG--------------------TGAGTGATGCTCATGCGGC-----------TATTGGGG-----AAAAAG----TTCGG---------CT------AGAAA------------TTTATTGAT
droEug1 scf7180000409490:239679-239887 + ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---AGTTTTTA-A--------------------------------------------------------------------------CTGGGT-AA-----------AAAACC-----------TTACCTATCTATTCT----ATAAG-AA-A-AGTA--------------------------CATCC----------------A--TATATACA-----GTGAGT--------------------------------G-GATGAGTGAGT----GCGTGCGTGTG------TGTG--------------------TAAGTGATGCTCATGCGGC-----------TATTCGGG-----AAAAAG----TTCGG---------CT------AGAAA------------TTTATTGAT
dm3 chr3R:4485544-4485734 - ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---CGTTTTTA-A--------------------------------------------------------------------------CTG-CTGAA-----------AATACC---------ATTTACC-A---TCTAT----ATAAG-AA-T-GGAA--------------------------CAC----------------GCATGTGTATGC----------------------------------------------GGTGG----CT----G--TGTGTGTG--------TG--------------------TTCGTGATGCTCATGCGGC-----------TATTT--G-----AAAAAG----TTCGC---------CT------AGAAA------------TTTATTGAT
droSim2 3r:16503986-16504176 + ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---CGTTTTTA-A--------------------------------------------------------------------------CTG-CTGAA-----------AATACC---------ATTTACC-A---TGTAT----ATAAG-AA-T-GGAA--------------------------CCC----------------GCATGTGTATGC----------------------------------------------GGTGG----CT----G--TGTGTGTG--------TG--------------------TTCGTGATGCTCATGCGGC-----------TATTT--G-----AAAAAG----TTCGC---------CT------AGAAA------------TTTATTGAT
droSec2 scaffold_0:17367841-17368037 + ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---CGTTTTTA-A--------------------------------------------------------------------------CTG-CTGAA-----------AATACCATGTAC--CATTTACC-A---TGTAT----ATAAG-AA-T-GGAA--------------------------CAC----------------GCATGTGTATGC----------------------------------------------GGTGG----CT----G--TGTGTGTG--------TG--------------------TTCGTGATGCTCATGCGGC-----------TTTT---G-----AAAAAG----TTCGC---------CT------AGAAA------------TTTATTGAT
droYak3 3R:8548413-8548616 - ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAGTAGCGTTTTTT-A--------------------------------------------------------------------------CTG-GTGAA-----------ATTACC---------ATTTACC-A---TGTAT----ATAAG-AA-T-AGTA--------------------------TATGCATATGTGT------GTATGTATATAC----------------------------------------------GATGA----GT----GCCT--GTGTG--------TG--------------------TGCGTGATGCTCATGCGGC-----------TATTT--G-----AAAAAG----TTCGC---------CT------AGAAA------------TTTATTGAT
droEre2 scaffold_4770:17100693-17100888 + ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---CGTTTTTA-A--------------------------------------------------------------------------ATG-GTGAA-----------AATACC---------ATTTACC-A---TGTAC----ATAAG-AA-T-GGTA--------------------------TATGCATATGTG----------TGTGTATGT------------AC--------------------------------GGTGA----GT----GCGTGCGTGTG--------TG--------------------TGCATTATGCTCATGCGGC-----------T------------AAAATG----TTCGC---------CT------AGAAA------------TTTATTGAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAA---AGCAAATG--------------------------------------AAATGTCGTCTGTTGGTTAGTCGAGTGGTGGGGGAATCCTGGGCGAAAT-A---TATA---------TATT----------A--------TACGG----AAA-A-AGTA---TTA--------------------TATGCATATGTAGAC----ATATGTATATCC----------------------------------------------GTT-------CGACTG--TGTG------------TG----TGTGCGACAGTTTGTA-TGACGAGGCTCATGCGGT-----------TATTG--G-----ACAATG----TTCGG------G--CT------AAAAA------------TTTATTGATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................................................................................................................................................................................................................................................................................................................................................................................TATTG--G-----ACAATG----TTCGG------G--C.................................1912.0020000000020
..................................................................................................................................................................................................................................................TATGCATATGTAGAC----ATATGTA................................................................................................................................................................................................................2211.0010100000000
...................TAACCAAAATGGCACAGGTCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.......................................................................................................................TTGGTTAGTCGAGTGGTGGG.................................................................................................................................................................................................................................................................................................................................................2011.0010000001000
............................TGGCACAGGTCTAGAGCAGCAAGT........................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000001000
.................ATTAACCAAAATGGCACAGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...................TAACCAAAATGGCACAGGTCTAGAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000001000
...............................................................................................................................................................................................................................................................................CC----------------------------------------------GTT-------CGACTG--TGTG------------TG----TGTG.................................................................................................................2111.0010100000000
...................................................................TG--------------------------------------AAATGTCGTCTGTTGGTT...............................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.......................................................................................................................................................................................................................A---TTA--------------------TATGCATATGTAGAC----.......................................................................................................................................................................................................................1911.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................GTTTGTA-TGACGAGGCTCATG......................................................................................2111.0010000001000
.........................................................................................................................................................................................................................................................................................................................................................................................................T-----------TATTG--G-----ACAATG----TTCGG------G--C.................................2011.0010000000010
.................ATTAACCAAAATGGCACAGGTCTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
..........................AATGGCACAGGTCTAGAGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
....................AACCAAAATGGCACAGGTCTAGAGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000000
................TATTAACCAAAATGGCACAGGTCTAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000000
.........................AAATGGCACAGGTCTAGAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010000000
...................................................................TG--------------------------------------AAATGTCGTCTGTTGGT................................................................................................................................................................................................................................................................................................................................................................1911.0010000001000
.....................ACCAAAATGGCACAGGTCTAGAGCAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000001000
.......................................................................................................................TTGGTTAGTCGAGTGGTGG..................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
droPer2
ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAA---AGCAAATG--------------------------------------AAATGTCGTCTGTTGGTTAGTCGAGTGGTGGGGGAATCCTGGGCGAAAT-A---TATA---------TATT----------A--------TACGG----AAA-A-AGTA---TTA--------------------TATGCATATGTAGACATATGTATGTATATCC----------------------------------------------GTT-------CGACTG--TGTG------------TG----TGTGCGACAGTTTGTA-TGACGAGGCTCATGCGGT-----------TATTG--G-----ACAATG----TTCGG------G--CT------AAAAA------------TTTATTGATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................................................................................................................TTAGTCGAGTGGTGGGGGAA.............................................................................................................................................................................................................................................................................................................................................2012.002000002
....................AACCAAAATGGCACAGGTCTAGAGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................2712.002200000
....................AACCAAAATGGCACAGGTCTAGAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................2512.002200000
................................................................AAATG--------------------------------------AAATGTCGTCTGTTGG.................................................................................................................................................................................................................................................................................................................................................................2111.001000001
...............................................................................................................................................................................................................................................................................CC----------------------------------------------GTT-------CGACTG--TGTG------------TG----TGT..................................................................................................................2011.001000010
.........................................................................................................................................................................................................................................................................................................................................................................................GACGAGGCTCATGCGGT-----------TATTG--G-----AC........................................................2511.001100000
....................................................................................................................................TGGTGGGGGAATCCTGGG......................................................................................................................................................................................................................................................................................................................................1811.001000001
..........................................................................................................................GTTAGTCGAGTGGTGGGT................................................................................................................................................................................................................................................................................................................................................1811.001000001
..................................................................................................................................................................................................................................................................TATGTATGTATATCC----------------------------------------------GTT-------CGACT..............................................................................................................................................2311.001100000
.........................AAATGGCACAGGTCTAGAGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
.........................AAATGGCACAGGTCTAGAGCAGCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
....................AACCAAAATGGCACAGGTCTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
.........................................................................................................................................................................................................................................................................GTATATCC----------------------------------------------GTT-------CGACTG--TGTG------------TG----TGC..................................................................................................................2611.001100000
................................................................................................................................CGAGTGGTGGGGGAATCCTTC.......................................................................................................................................................................................................................................................................................................................................2111.001000001
droWil2
ATAATATGAGTAATGCTAT---CCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---AG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................AT---CCAAAATGGCACAGGTCTAGAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................2613.00300030
.............................GGCACAGGTCTAGAGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00200020
.................AT---CCAAAATGGCACAGGTCTAGAGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................2812.00200200
..........................AATGGCACAGGTCTAGAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200020
.......................CAAAATGGCACAGGTCTAGAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00200110
.............................GGCACAGGTCTAGAGCAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
.........................AAATGGCACAGGTCTAGAGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100001
....................................GTCTAGAGCAGCAAGTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100001
........................AAAATGGCACAGGTCTAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
................TAT---CCAAAATGGCACAGGTCTAGAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000
........................AAAATGGCACAGGTCTAGAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
................................ACAGGTCTAGAGCAGCAAGTAAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
......................CCAAAATGGCACAGGTCTAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
..............................GCACAGGTCTAGAGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
droVir3
ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAT---GGAACTTG------TGTATGTGTGCGTGTGTTTGTGTGTGAATGTAAAATGTGGTGC---------------GGT-------------GCAAAAG-AGGGTATA---------TAAT----------G--------GAAGA----AAA-A-AAAAC-GTAATGGTA---------------CA----TTT------------GTGCATATGT------------GTGTTAGCTGTGTCAGCTAAAAGTGGTTC----T-GTGT----GT------------GAG--------TGGCCATGTGTGAAAGAG----TCGGCGATGCTCATGCGGTCCGCACACGATTATTG--A-----ACAGTG----TTCAGT-GAGGG--CT------CTAACTTTTTTTTTTTTTTTATTGATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................ATGGCACAGGTCTAGAGCAGT............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.............................GGCACAGGTCTAGAGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000001000
...................TAACCAAAATGGCACAGGTCTAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000001000000000000000000000000000000000
..............................GCACAGGTCTAGAGCAGCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000010000000000000000000000000000000000000
.............................GGCACAGGTCTAGAGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000001000
............................................................................................................................................................................................................................................................................................................................................................................................................................A-----ACAGTG----TTCAGT-GAGGG--CT------..........................2011.001010000000000000000000000000000000000000000000000000000000000000
..................TTAACCAAAATGGCACAGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................GTCAGCTAAAAGTGGTTC----T-GTC.........................................................................................................................................................2211.001000000000000000000000000000010000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................GGCCATGTGTGAAAGAG----TCGG.................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.....................ACCAAAATGGCACAGGTCTAGAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000100000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................T----GT------------GAG--------TGGCCATGTGTGAAA............................................................................................................2111.001000000000000000000000001000000000000000000000000000000000000000
...................TAACCAAAATGGCACAGGTCTAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000010
.................ATTAACCAAAATGGCACAGGTCTAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000001000000000000000000000000000000000000000000000
......................................................................................................ATGTAAAATGTGGTGC---------------GGT-------------GC.....................................................................................................................................................................................................................................................................................................................................2111.001000000001000000000000000000000000000000000000000000000000000000
.................................CAGGTCTAGAGCAGCAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000001000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGTG----TTCAGT-GAGGG--C.................................1811.001010000000000000000000000000000000000000000000000000000000000000
............................TGGCACAGGTCTAGAGCAGCAAGTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001000000000000000000000000000000000000000000000000000000000
.......................CAAAATGGCACAGGTCTAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000010000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................CGGCGATGCTCATGCGGTCCGCACA...........................................................................2511.001000000000000001000000000000000000000000000000000000000000000000
...........................ATGGCACAGGTCTAGAGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000010000000000000000000000000000000000000000000
..............................GCACAGGTCTAGAGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000010000000000000000000000000000000
....................AACCAAAATGGCACAGGTCTAGAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................GGCCATGTGTGAAAGAG----TCGGC................................................................................................2211.001000000000000000010000000000000000000000000000000000000000000000
...........................ATGGCACAGGTCTAGAGCAGCAAGTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000010000000000000000000000000000000000000000000
....................AACCAAAATGGCACAGGTCTAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000001000000000000000000000000000000000000000000000000
...................................................................................TGCGTGTGTTTGTGTGTG.......................................................................................................................................................................................................................................................................................................................................................................................18200.102000000000010000000000001000000000000000000000000000000000000000
............................................................................GTATGTGTGCGTGTGTTT..............................................................................................................................................................................................................................................................................................................................................................................................18120.081000000000100000000000000000000000000000000000000000000000000000
droMoj3
ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAT---TGTACTTG------TATATGTG------------------AATGTAAAATGTGGTTT---------------GGT-------------GCAAAAT-AGGGTACA---------TAAT----------------------GG----AAAAAAA--------ATG-TACATTTACCTTTGGTGTATT----TGTG--------TGTGTGTATGT------------GTGTTAGCTGTGTCAGCTAAAAGTGTGTC----T-TTGT----GT------------GAG--------TGTGCATGTGTGAAAGAG----TCGGCGATGCTCATGCGGTCTGCACACGATTATTG--A-----ACAGTG----TTCAGTCGAG--TTCTA----AAAAAATT-------TTTTTTATTGATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............GCTATTAACCAAAATGGCACAGGTCTAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001100000
............................TGGCACAGGTCTAGAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
.............................GGCACAGGTCTAGAGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
.................ATTAACCAAAATGGCACAGGTCTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
................TATTAACCAAAATGGCACAGGTCTAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000010
........................AAAATGGCACAGGTCTAGAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
...........................ATGGCACAGGTCTAGAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
droGri2
ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAT---GGCGGATACATCCGTGGATGTGAATGTGGATGTCGTTGT---------------------GAATGTTCAAGTGCT-------------ACAATAGAAGGGTACA---------TAAT------G-G-A---TAAAA----AGAAG-AA-A-AAAACAGTAATG-TACATGTAGCGTTGCTACAC----------------GTGTGTGTGTGT-------------------------------------------------GA----GT----GCGTGTGTG----------TG----TGTGTGAAAGTG----TCTGTGATGCTCATGTGGT-----------TATATTGTGA---ACACCGATTCTTCACTCGAGGGTTCCACAAAAAAAAA------------TTTATTGATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.............................................................................................................................GTTCAAGTGCT-------------ACAATAGAAGG............................................................................................................................................................................................................................................................................................................................2211.00110
.........................AAATGGCACAGGTCTAGAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101
.......................CAAAATGGCACAGGTCTAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110
..............................GCACAGGTCTAGAGCAGCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101
..........................AATGGCACAGGTCTAGAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110
droAna3
ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---TAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATGTGTACA--------TATATATA-----TTG-------------------------------CCATG-TGTGT----GT----G--TGTGTGTGTGTTTGAGTG------------------------TGAGTGACATGCGGC-----------TGTTG--G-----AGAGTG----TTCGG---------CT------AAAAA------------TTTATTGATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................................................................................................................................................................................................................................................................................................................................................................................CATGCGGC-----------TGTTG--G-----AGAGTG----T...............................................2111.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................GGC-----------TGTTG--G-----AGAGTG----TTCGG---------C.................................2111.001000001
.....................ACCAAAATGGCACAGGTCTAGAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000
................TATTAACCAAAATGGCACAGGTCTAGAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................GCGGC-----------TGTTG--G-----AGAGTG----TTCG............................................2111.001000001
........................................................................................................................................................................................................................................................................................................................................................GTGTTTGAGTG------------------------TGAGTGACAT.......................................................................................2111.001100000
........................................................................................................................................................................................................................................................................................................................................................GTGTTTGAGTG------------------------TGAGTGACA........................................................................................2011.001000010
................................................................................................................................................................................................................................................................................................................................................................................................GACATGCGGC-----------TGTTG--G-----AGA.......................................................1911.001000010
..........................................................................................................................................................................................................................................................................................................................CATG-TGTGT----GT----G--TGTGTG.....................................................................................................................................18200.051000001
droBip1
ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---TAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATGTGTACATAT--ATATATATTG----------------------------------------C-----CATGT----GT----G----TGTGTG--------TG--------------------TGCGTGAGTGACATGCGGC-----------TGTTG--G-----AGAGTG----TTCGG---------CT------AAAAA------------TTTATTGATSizeHit CountTotal NormTotal
No Reads
droKik1
ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAA---AGTGA--G-A--------------------------------------------------------------------------GGG-GTGGA-----------AATA-----TACT----------A---CACAT----GAAA--AA-A-AGTA-----ATG--------------------T----------TCAACTATATGTATATC-------------------------------------------------TGA----GTGAGTG--TGTG------------TG--------------------TGTGTG------ATGCGGC-----------TAGTG--G-----ACAATG----TTCGG---------CT------AAAAA------------TTTATTGATSizeHit CountTotal NormTotal
No Reads
droFic1
ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---AGTTAATA-A--------------------------------------------------------------------------CTG-GTGAA-----------AATA-------------TTAC--A---TATAG----A-AAGAAA-A-ACTA--------------------------C--------------------TTGTATATAC----------------------------------------------AGTGA----GT----GCATGTGTGTG--------TG--------------------TGAGTGATGCTCATGCGGC-----------TATTG--G-----AAAAAG----TTCGG---------CT------AGAAA-----------TTTTATTGATSizeHit CountTotal NormTotal
No Reads
droEle1
ATAATATGAGTAATGCTATCAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---AGTTATAA-A--------------------------------------------------------------------------GTG-GTGAA-----------AATACA---TACTACATATA-C-A---TATAT----ATAAG-AA-A-AGTA--------------------------CA----------------------TATATAC----------------------------------------------AATGA----GT----GAGTGCGTGTG--------TG--------------------TGAGTGATGCTCATGCGGC-----------TATTG--G-----AAAAAG----TTCGG---------CT------AGAAA------------TTTATTGATSizeHit CountTotal NormTotal
No Reads
droRho1
ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---AGTTATCA-----------------------------------------------------------------------------TA-GTGAA-----------AATAAA---TA------CTA-C-A---TATAT----ATAGG-AA-A-AATA--------------------------CA----------------------TATATAC----------------------------------------------AGTGA----AT----GAGTGCGTGTG--------TG--------------------TGAGTGATGCTCATGCGGC-----------TATTG--G-----AAAAAG----TTCGG---------CT------AGAAA------------TTTATTGATSizeHit CountTotal NormTotal
No Reads
droBia1
ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---AGTTTTTA-A--------------------------------------------------------------------------CTGGGCGAA-----------AATGCC---------C-------GTCTTCTAT----ATAGG-AA-A-AGTA--------------------------CG----TATGTGTGCACCT--ATGTACATGCACACACGCGGGC--------------------------------G-AGTGAGTAATT----GCGTGCGTGTG--------TG--------------------TGCGTGATGCTCATGCGGC-----------TGTTGGGGGAAAAAAAAAG----TTCGG---------CT------AGAAA------------TTTATTGATSizeHit CountTotal NormTotal
No Reads
droTak1
ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---AGTTTTTG-A--------------------------------------------------------------------------CTGGGTGAA-----------AATACC---------GTCTAC--------TAC----ATAAGAAA-A-AGTA--------------------------TA----TATGTAC------GCATGTATATGC----------------------------------------------AGTGAGTAAGT----GCGTGCGTGTG--------TG--------------------TGAGTGATGCTCATGCGGC-----------TATTGGGG-----AAAAAG----TTCGG---------CT------AGAAA------------TTTATTGATSizeHit CountTotal NormTotal
No Reads
droEug1
ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---AGTTTTTA-A--------------------------------------------------------------------------CTGGGT-AA-----------AAAACC-----------TTACCTATCTATTCT----ATAAG-AA-A-AGTA--------------------------CATCC----------------A--TATATACA-----GTGAGT--------------------------------G-GATGAGTGAGT----GCGTGCGTGTG------TGTG--------------------TAAGTGATGCTCATGCGGC-----------TATTCGGG-----AAAAAG----TTCGG---------CT------AGAAA------------TTTATTGATSizeHit CountTotal NormTotal
No Reads
dm3
ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---CGTTTTTA-A--------------------------------------------------------------------------CTG-CTGAA-----------AATACC---------ATTTACC-A---TCTAT----ATAAG-AA-T-GGAA--------------------------CAC----------------GCATGTGTATGC----------------------------------------------GGTGG----CT----G--TGTGTGTG--------TG--------------------TTCGTGATGCTCATGCGGC-----------TATTT--G-----AAAAAG----TTCGC---------CT------AGAAA------------TTTATTGATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........................AATGGCACAGGTCTAGAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................20114.00140000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009000200000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000
....................AACCAAAATGGCACAGGTCTAGAGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................28113.001300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.........................AAATGGCACAGGTCTAGAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................2118.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000010000010000000000000000000000000000000000000000000000000000000000000000001001000000020000000000000000000001000000
..............................GCACAGGTCTAGAGCAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................1916.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000100000000
.............................GGCACAGGTCTAGAGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................1916.0060000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000
...............................................................................................................................................................................................................AA-T-GGAA--------------------------CAC----------------GCATGTGTATG............................................................................................................................................................................................................2115.0050000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000111000000000000000000000000000010000
...................TAACCAAAATGGCACAGGTCTAGAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................ATGGCACAGGTCTAGAGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100200000000010000000000000000000000000000
..............................GCACAGGTCTAGAGCAGCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
.........................AAATGGCACAGGTCTAGAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................AAAATGGCACAGGTCTAGAGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000010000000000000000000000000000
..........................AATGGCACAGGTCTAGAGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000010
.................................................AGTAAGTAG---CGTTTTTA-A--------------------------------------------------------------------------CTG-.......................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000010000
...............CTATTAACCAAAATGGCACAGGTCTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................AAATGGCACAGGTCTAGAGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................2313.0030000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.....................................................................................................................................................................................................................GAA--------------------------CAC----------------GCATGTGTATGC----------------------------------------------GGT..........................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................TGTGTGTG--------TG--------------------TTCGTGATGCT..........................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000010000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
............................TGGCACAGGTCTAGAGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000100000000000000000000000000
..................................................................TTA-A--------------------------------------------------------------------------CTG-CTGAA-----------AATACC---------ATT.....................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................ACAGGTCTAGAGCAGCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
................................ACAGGTCTAGAGCAGCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000010000000000
......................CCAAAATGGCACAGGTCTAGAGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
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droSim2
ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---CGTTTTTA-A--------------------------------------------------------------------------CTG-CTGAA-----------AATACC---------ATTTACC-A---TGTAT----ATAAG-AA-T-GGAA--------------------------CCC----------------GCATGTGTATGC----------------------------------------------GGTGG----CT----G--TGTGTGTG--------TG--------------------TTCGTGATGCTCATGCGGC-----------TATTT--G-----AAAAAG----TTCGC---------CT------AGAAA------------TTTATTGATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................ACAGGTCTAGAGCAGCAAGT........................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200000000000002000
.................................CAGGTCTAGAGCAGCAAGT........................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00200000200000000000
.........................AAATGGCACAGGTCTAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000000000
............................TGGCACAGGTCTAGAGCAGCAAGTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000001000000
...............................CACAGGTCTAGAGCAGCAAGTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000000000010000
..................................................................................................................................................................................................................................................................................................................................................................G--------------------TTCGTGATGCTCATGCGG...................................................................................1911.00100001000000000000
.................................CAGGTCTAGAGCAGCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................1711.00100000000001000000
................TATTAACCAAAATGGCACAGGTCTAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000000000
...............................................................TTTTTA-A--------------------------------------------------------------------------CTG-CTGAA-----------AATACC---------........................................................................................................................................................................................................................................................................................................2111.00101000000000000000
.....ATGAGTAATGCTATTAACCAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100001000000000000
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..........................AATGGCACAGGTCTAGAGCAGTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000000000001000
................................................................................................................................................................................................TGTAT----ATAAG-AA-T-GGAA--------------------------CCC----------------G......................................................................................................................................................................................................................2111.00101000000000000000
..............................GCACAGGTCTAGAGCAGCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
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.....................................................................................................................................................................................................................................................................................................................................................TGTG--------TG--------------------TTCGTGATGCTCA........................................................................................1911.00100001000000000000
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..................................AGGTCTAGAGCAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................1511.00100000010000000000
...........................ATGGCACAGGTCTAGAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000000000100000
....................................................AAGTAG---CGTTTTTA-A--------------------------------------------------------------------------CTG-CTG....................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
...............................CACAGGTCTAGAGCAGCAAGT........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
............................TGGCACAGGTCTAGAGCAGCAAGT........................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000001000000
...................................................................................................................................................................................................................................................................................................................................G----CT----G--TGTGTGTG--------TG--------------------TT...................................................................................................16200.05100000000001000000
droSec2
ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---CGTTTTTA-A--------------------------------------------------------------------------CTG-CTGAA-----------AATACCATGTAC--CATTTACC-A---TGTAT----ATAAG-AA-T-GGAA--------------------------CAC----------------GCATGTGTATGC----------------------------------------------GGTGG----CT----G--TGTGTGTG--------TG--------------------TTCGTGATGCTCATGCGGC-----------TTTT---G-----AAAAAG----TTCGC---------CT------AGAAA------------TTTATTGATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............................GGCACAGGTCTAGAGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020020
........................................................................................................................................................................................................................................................................TGTGTATGC----------------------------------------------GGTGG----CT----G--TGTG.......................................................................................................................................2111.0010100
.....................................................................................................................................................................................................................................................................................................................................................TGTG--------TG--------------------TTCGTGATGCTCATGT.....................................................................................2211.0010001
.........................................................................................................................................................................................................ATAAG-AA-T-GGAA--------------------------CAC----------------GCATGT.................................................................................................................................................................................................................2111.0010100
.................................................................................................................................................................................................GTAT----ATAAG-AA-T-GGAA--------------------------CAC----------------GC.....................................................................................................................................................................................................................2111.0010001
................TATTAACCAAAATGGCACAGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100
............................TGGCACAGGTCTAGAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
.................................................................................................................................................................................................................................................................................................................................TGG----CT----G--TGTGTGTG--------TG--------------------TTCGT................................................................................................2111.0010100
..............................GCACAGGTCTAGAGCAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
..........................AATGGCACAGGTCTAGAGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
..........................................................................................................................................................................................................................................................................................................................................................................................GTGATGCTCATGCGGC-----------TTTT---G-----..........................................................2111.0010001
........................AAAATGGCACAGGTCTAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
.....................................................................................................................................................................................................................................................................................................................................................TGTG--------TG--------------------TTCGTGATGCTCATG......................................................................................2111.0010001
....................................................................................................................................................................................ATTTACC-A---TGTAT----ATAAG-AA-T-........................................................................................................................................................................................................................................................................2111.0011000
................................................................................................................................................................................................................A-T-GGAA--------------------------CAC----------------GCATGTGTATGC----------------------------------------------.............................................................................................................................................................2111.0010001
..........................AATGGCACAGGTCTAGAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
...................TAACCAAAATGGCACAGGTCTAGAGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010100
.......................................TAGAGCAGCAAGTAAGTAG---CG.............................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
.....................................................................................................................................................................................TTTACC-A---TGTAT----ATAAG-AA-T-G.......................................................................................................................................................................................................................................................................2111.0011000
....................................................................................................................................................................................................................................................................................................................................................GTGTG--------TG--------------------TTCGTGATGCTCA........................................................................................2011.0010100
droYak3
ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAGTAGCGTTTTTT-A--------------------------------------------------------------------------CTG-GTGAA-----------ATTACC---------ATTTACC-A---TGTAT----ATAAG-AA-T-AGTA--------------------------TATGCATATGTGT------GTATGTATATAC----------------------------------------------GATGA----GT----GCCT--GTGTG--------TG--------------------TGCGTGATGCTCATGCGGC-----------TATTT--G-----AAAAAG----TTCGC---------CT------AGAAA------------TTTATTGATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................AACCAAAATGGCACAGGTCTAGAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................2612.00200000020000
...................TAACCAAAATGGCACAGGTCTAGAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................2712.00200000020000
.....................................................................................................................................................................................................................................................................GTATGTATATAC----------------------------------------------GATGA----GT----GCC...........................................................................................................................................2211.00100100000000
.............................GGCACAGGTCTAGAGCAGCAAGT........................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
......................CCAAAATGGCACAGGTCTAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
..........................AATGGCACAGGTCTAGAGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000
.............................GGCACAGGTCTAGAGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
..........................AATGGCACAGGTCTAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000
..............................GCACAGGTCTAGAGCAGCAAGT........................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
..........................AATGGCACAGGTCTAGAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
...............................................................................................................................................................................................................................................................................................................................GATGA----GT----GCCT--GTGTG--------TG--------------------TGC..................................................................................................2111.00100010000000
......................................................GTAGTAGCGTTTTTT-A--------------------------------------------------------------------------CTG-GT.....................................................................................................................................................................................................................................................................................................................................2111.00100000010000
..............GCTATTAACCAAAATGGCACAGGTCTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
.............................................................................................................................................................................................................................................................................ATAC----------------------------------------------GATGA----GT----GCCT--GTGTG--------T..........................................................................................................................2111.00100000010000
...............................................................................................................................................................................................................................................................................AC----------------------------------------------GATGA----GT----GCCT--GTGTG--------TG--------------------TGCGT................................................................................................2511.00100000010000
.........................AAATGGCACAGGTCTAGAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
.................ATTAACCAAAATGGCACAGGTCTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
droEre2
ATAATATGAGTAATGCTATTAACCAAAATGGCACAGGTCTAGAGCAGCAAGTAAGTAG---CGTTTTTA-A--------------------------------------------------------------------------ATG-GTGAA-----------AATACC---------ATTTACC-A---TGTAC----ATAAG-AA-T-GGTA--------------------------TATGCATATGTG----------TGTGTATGT------------AC--------------------------------GGTGA----GT----GCGTGCGTGTG--------TG--------------------TGCATTATGCTCATGCGGC-----------T------------AAAATG----TTCGC---------CT------AGAAA------------TTTATTGATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....................AACCAAAATGGCACAGGTCTAGAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000110
..............................................................................................................................................................................................................................................................................................................................................................................................TGCTCATGCGGC-----------T------------AAAATG----TTCG............................................2311.0010000010
....................................GTCTAGAGCAGCAAGTAAGTAG---CGT............................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000
........................................................................................................................................................................................................................................................TATGTG----------TGTGTATGT------------AC--------------------------------GG...........................................................................................................................................................1911.0010000100
.............................................................................................................................................................................................................................................................G----------TGTGTATGT------------AC--------------------------------GGTGA----GT----GC............................................................................................................................................2111.0010000100
........................................................................................................................................................................................................................................................................................................................................GT----GCGTGCGTGTG--------TG--------------------TGCATTATGCTC.........................................................................................2711.0010100000
...........................ATGGCACAGGTCTAGAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
..................................................GTAAGTAG---CGTTTTTA-A--------------------------------------------------------------------------ATG-G......................................................................................................................................................................................................................................................................................................................................2111.0010000100
..........................AATGGCACAGGTCTAGAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
.................................................................................................................................................................................................................................................................................................................................TGA----GT----GCGTGCGTGTG--------TG--------------------TT...................................................................................................20140.0710000010

Generated: 05/17/2015 at 10:47 PM