ID:

dps_595

 Coordinate:

2:16906791-16906941 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-6.6 -6.5 -6.3 -6.2

Flybase annnotation

exon [Dpse\GA14206:4]; CDS [Dpse\GA14206-cds]; three_prime_UTR [Dpse\GA14206-u3]; CDS [Dpse\GA14206-cds]; intron [Dpse\GA14206-in]; exon [Dpse\GA14206:3]; intron [Dpse\GA14206-in]

No Repeatable elements found

Sense Strand Reads

###########################################################################################################################################################################################################################################################
CGGCGACTACTATGCCGGTGGCTATTATAATGGATATGACTACGGTTATGGTAAATACAACAAACAACATAATAATGCTCATAGCAACTATTACAATAACAACACGTCGAGTAACTACCACCAAAACAAGAACAGTAGCAGCAACAACTACCAGCAGTTTTAAGTAGCCACAGTCCACCACAGACAGGCAACACCAATCACAGCAACAACCACCAGATTAATTATCAATTACTTTGCCATAGACCTGAATC
*************************************************************************************************........((...((..((((....(((((.......((((.........)))).....)))))..))))..))................))************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 M059
embryo
 GSM343916
embryo
 M062
head
 SRR902011
testis
 SRR902012
CNS imaginal disc
...................................................................................................................................................................................................................................ATTACTTTGCCATAGACCTGAATC 24 0 1 2.00 2 0 1 1 0 0 0
.................................................................................................AACAACACGTCGAGTAACTAC..................................................................................................................................... 21 0 1 2.00 2 1 1 0 0 0 0
..............................................................................................AATAACAACACGTCGAGTAACTACCA................................................................................................................................... 26 0 1 2.00 2 2 0 0 0 0 0
.......................ATTATAATGGATATGACTACGGTT............................................................................................................................................................................................................ 24 0 1 2.00 2 2 0 0 0 0 0
...........................................................................................................................................................................AGTCCACCACAGACAGGC.............................................................. 18 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................................................................................................................AATTATCAATTACTTTGCCATAGACC...... 26 0 1 1.00 1 0 1 0 0 0 0
.............................................................AAACAACATAATAATGCTCATAGCA..................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0
.....................................................................................................................................................................................AGATAGGCAACACCAATCACAGC............................................... 23 1 1 1.00 1 0 1 0 0 0 0
...............................................................................................................................................................................................CACCAATCACAGCAACAACCACCAGATTA............................... 29 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................GTAATTACCATCAAAACAAGAAC...................................................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
........................................................................................................................................AGCAGCAACAACTACCAGCAGT............................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................................................AGACAGGCAACACCAATCACA................................................. 21 0 1 1.00 1 1 0 0 0 0 0
.......TACTATGCCGGTGGCTATTAT............................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0
...........................................................................................................................................................................AGTCCACCACAGACAGGCA............................................................. 19 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................AACAACACGTCGAGTAACTACCAC.................................................................................................................................. 24 0 1 1.00 1 0 1 0 0 0 0
.....................................................................................................................................................................AGCCACAGTCCACCACAGACAG................................................................ 22 0 1 1.00 1 0 1 0 0 0 0
........................................................................................................................................AGCAGCAACAACTACCAGCAGTTTTAAGT...................................................................................... 29 0 1 1.00 1 0 1 0 0 0 0
.................................................................................................AACAACACGTCGAGTAACTACCACC................................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0
..................................................................................................................................................................................................CAATTACAGCAACAACCACCA.................................... 21 1 1 1.00 1 0 0 1 0 0 0
............................AATGGATATGACTACGGTTATGGTA...................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0
...................................................................................................CAACACGTCGAGTAACTACCACC................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0
....................................................................................................................................................................TAGCCACAGTCCACCACAGACAGGCAAC........................................................... 28 0 1 1.00 1 0 1 0 0 0 0
..............................................................................................................................................................TTTAAGTAGCCACAGTCCACCACAGA................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
....................................................AAATACAACAAACAACATAATA................................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0
..........................ATAATGGATATGACTACGGTT............................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................................................................................................TACTTTGCCATAGACCTGAAT. 21 0 1 1.00 1 0 1 0 0 0 0
................................................................................................................................AGAACAGTAGCAGCAACAACTACCAGC................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................................................................................ACACCAATCACAGCAACAACCACCAGATT................................ 29 0 1 1.00 1 1 0 0 0 0 0
..............................................................AACAACATAATAATGCTCATAGCAACTAT................................................................................................................................................................ 29 0 1 1.00 1 0 1 0 0 0 0
..................................................................................................................CTACCACCAAAACAAGAACAGT................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0
....................................................AAATACAACAAACAACATAAT.................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................................AGAACAGTAGCAGCAACAAC....................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0
.................................................................................................................................................................................................................................CAATTACTTTGCCATAGACCTGAATC 26 0 1 1.00 1 0 1 0 0 0 0
....................................................AAATACAACAAACAACAAAGTAGTGCT............................................................................................................................................................................ 27 3 1 1.00 1 0 1 0 0 0 0
............................AATGGATATGACTACGGTT............................................................................................................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................................................................AACTACAGCAACAACCACCAGATT................................ 24 2 1 1.00 1 0 1 0 0 0 0
..........................ATAATGGATATGACTACGGTTATGGT....................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................................................................................CACAGTCCACCACAGACAGGC.............................................................. 21 0 1 1.00 1 0 1 0 0 0 0
....................................................................................................................................CAGTAGCAGCAACAACTACCAGCAGTT............................................................................................ 27 0 1 1.00 1 0 1 0 0 0 0
...................................................................................................CAACACGTCGAGTAACTA...................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................ATAACAACACGTCGAGTAACTACCACC................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................AAAACAAGAACAGTAGCAGCAA........................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0
.........................TATAATGGATATGACTACGGTTATGG........................................................................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................TTACAATAACAACACGTCGAGT........................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0
...................GGCTATTATAATGGATATG..................................................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0
............................................................................................................................................................................................................................ATTATCAATTACTTTGCCATAGACCTGA... 28 0 1 1.00 1 0 1 0 0 0 0
........................................................................................................................................AGCAGCAACAACTACCAGC................................................................................................ 19 0 1 1.00 1 0 0 1 0 0 0
...................................................................................................................................ACAGTAGCAGCAACAACTACCAGC................................................................................................ 24 0 1 1.00 1 0 1 0 0 0 0
..............................................................................................................................................................................................................................TATCAATTACTTTGCCATAGACCTGA... 26 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................................................AGACAGGCAACACCAATCACAGCA.............................................. 24 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................................................ATACAGGCAAAACCAATCACAGC............................................... 23 2 1 1.00 1 0 1 0 0 0 0
CGGCGACTACTATGCCGGTGGCTATT................................................................................................................................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0
.............................ATGGATATGACTACGGTTATGGTAA..................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
......................................................................................................CACGTCGAGTAACTACCACC................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0
.............................................................................................................................................................................................AACACCAATCACAGCAACAAC......................................... 21 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................ACACGTCGAGTAACTACCACCAAA.............................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0
.......................ATTATAATGGATATGACTACGG.............................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 1 0
.....................................................................................................................................................ACCAGCAGTTTTAAGTAGCCACA............................................................................... 23 0 1 1.00 1 0 0 1 0 0 0
.............................ATGGATATGACTACGGTTATG......................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
....GACTACTATGCCGGTGGCT.................................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................................................................................................................AATTATCAATTACTTTGCCATAGACCT..... 27 0 1 1.00 1 1 0 0 0 0 0
.........................................ACGGTTATGGTAAATACAAC.............................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................................................................................................TACTTTGCCATAGACCTGA... 19 0 1 1.00 1 0 0 1 0 0 0
.............................................................................................................................................................................................AACACCAATCACAGCAACAACCACCA.................................... 26 0 1 1.00 1 0 1 0 0 0 0
......................................................................................................................................................................................................CACAGCAACAACCACCAGATT................................ 21 0 1 1.00 1 1 0 0 0 0 0
..................................................................................................................................................................AGTAGCCACAGTCCACCACAGAC.................................................................. 23 0 1 1.00 1 0 1 0 0 0 0
...........................................................................................................................................................................................................................AATTATCAATTACTTTGCCATAGACCTGA... 29 0 1 1.00 1 0 1 0 0 0 0
...........................TACTGGATATGACGACGG.............................................................................................................................................................................................................. 18 2 3 0.33 1 0 0 0 0 0 1
......................................................................................................................................................................................................CACAGCAACAACCCCCGG................................... 18 2 6 0.17 1 1 0 0 0 0 0
..................................................................................................................................................................................................................................AATTCCTTTGCCATAGCCCA..... 20 3 20 0.05 1 1 0 0 0 0 0
..............................................................................................................................CAAGAACAGTTTCAGCAA........................................................................................................... 18 2 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

GCCGCTGATGATACGGCCACCGATAATATTACCTATACTGATGCCAATACCATTTATGTTGTTTGTTGTATTATTACGAGTATCGTTGATAATGTTATTGTTGTGCAGCTCATTGATGGTGGTTTTGTTCTTGTCATCGTCGTTGTTGATGGTCGTCAAAATTCATCGGTGTCAGGTGGTGTCTGTCCGTTGTGGTTAGTGTCGTTGTTGGTGGTCTAATTAATAGTTAATGAAACGGTATCTGGACTTAG
**************************************************************........((...((..((((....(((((.......((((.........)))).....)))))..))))..))................))************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total GSM444067
head
 M059
embryo
 SRR902010
ovaries
 GSM343916
embryo
.............................................................................................GTTATTGTTGTGGAGCTGA........................................................................................................................................... 19 2 2 0.50 1 1 0 0 0
.......................................................................................................................................................................................................TGTCGTTCATGGTGATCTAATT.............................. 22 3 5 0.20 1 0 1 0 0
....................................................................................................................................................AAGGTCGTCAAAATTCCT..................................................................................... 18 2 11 0.18 2 0 0 2 0
...........................................................................................................................................................................................................ATGATTGGTGGTCTAATTA............................. 19 3 19 0.05 1 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 2:16906741-16906991 - dps_595 CGGCGACTACTATGCCGGTGGCTATTATAATGGATATGACTACGGTTATGGTAAATACAACAAACAACAT---AATAATGCTCATAGCAACTATTACAATAACAACACGTCG---AGTAACTACCACCAAAACAAGAACAGTAGCAGCAACAACTACCAGCAGTTTTAAGTAG--------CCACAG------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCACCACAGACAGGCAACACCAATCACAGCAACAACCACCA-----------------GATT-AATT-A-----------TCAATTACTTTGCCATAGACCTGA-----A--T------------C------
droPer2 scaffold_0:3486226-3486302 + ACGTTCATACGT------------------------------------------------------------------------------CGATTTCAAGAACCACACTG-------AAACAACAACAAAAACAACAACAACAA---CAACAACAACAAAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACA-----------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004943:6550631-6550895 - dwi_3317 CGGTGATTACTATACCGGTGGCTACTATAACGGATATGACTACGGTTATGGTAAATACAACAAACAACAT---AATAATGCTCATACCAATTATTACAATAACAACACGTCGTCAAGTAATTATCATCAGACCAAGAACAATAG---CAACAACTATCAGCAGTTTTAATT------A-AGTA----------------------------------AACAT-------AA----------------GTGTCGGGCATAACCAATAACAACAACAACAACAGCAACAGCA-GCAACAACAACATCATCAAATCACA---CAATC-----------AA---------CAGAAAA-------------------------------------------------------AAAA-AG-------------------------------------------------------------------
droVir3 scaffold_13047:9242007-9242248 - dvi_16116 TGCCGATTACTATGCCGGTGGCTACTATAATGGATATGACTATGGTTATGGTAAATACAACAAACAACAA---AATAATGCTCATAACAATTATTATAATAACACAACGTCA---AGTAATTATCATCAAAACAAGAACAATAG---CAACAACTATCAGCAGTTCTAA------TCT-AGCTAAAT--------------AC----AG-----G----CAA-CAA----------------------AAG--------------------------------------------------------------------CAAAC-----AAA--CAACCACAACAACAATAAA---------------------------------CAA-AAATGCCAT-------TATACA-ACATTT--------------------------------------TGA--A-----------------AC
droMoj3 scaffold_6540:31391933-31392245 + dmo_2143 TGCCGATTACTATGCCGGTGGCTACTATAATGGATATGACTATGGTTATGGTAAATACAACAAACAACAT---AATAATACTCATAACAATTATTACAATAACCCAACGTCA---AGTAACTATCATCAAAACAAGAACAATAG---CAACAACTATCAGCAGTTTTAA-TA-----T-AGCCAAAT-----------------G-CAG-----GCA-ACAA--AC------------------------------------AATGCAAAT----------------GAAAGCAAAAACAAAAACA--AAATCCAA---CAAAC-----------AACAACTACAACAATAAA---------------------------------CAAAAAATGCCAT-------TATACA-ACATTTTGAAAACAAATTTCC-C-TTCTATCATACACAAAA----------GAAAATTATATA------
droGri2 scaffold_14906:4003921-4004191 + TGCCGATTACTATGCCGGTGGCTACTATAATGGATATGACTATGGTTATGGTAAATACAACAAACAACATAATAATAATGCTCATAACAGTT--TATAATAACACAACGACA---AGTAATTACCATCAAAACAAGAACAATAG---CAACAACTATCAGCAGTTCTAATG------T-AGCTAAAT-----------------A-CTG-----GC----AA-CAA----------------------AA---------------------------------------------------------------------CAAACAAA-CATA--CAACAAGAACTACAACA------------------------------ATAAACAA-AAATGCCAT-------TATACA-ACATTTTGAA-ATATCTTTTC-C-CTTTACCATACAT--------------------------------
droAna3 scaffold_13340:2016429-2016710 - dan_2855 TGGCGACTACTACGCCGGCGGCTACTATAATGGATATGACTACGGTTATGGTAAATACAACAAAC---AT---AATAATGCTCAAAGCAACTATTACAATAACAATGCGTCG---AGTAATTACCATCAAAACAAGAACAATAG---CAACAACTATCAGCAGTTCTAAAA-----TT-AGCC----------------------------------AATAAACAA--AAAA--CAAAACAAAAAATAAGGC-------------------------------------------------------------AAACAAAAAACAAATCAAG--CAACAAT--CCACAGAACACCA----------------------------------------------------C--A-AACTAA-----------ATCA-A-CTTTGCCATAGACCAGA-TCCAA--AAAAAAA--------TATCC
droBip1 scf7180000396712:2315336-2315603 + TGGCGACTACTATGCCGGCGGCTACTATAATGGATATGACTACGGTTATGGTAAATACAACAAAC---AT---AATAATGCTCAAAGCAACTATTACAATAACAATGCGTCG---AGTAATTACCATCAAAACAAGAACAATAG---CAACAACTATCAGCAGTTCTAAAT------T-AGCC----------------------------------AACACACAA--AAA----------------GAGGCAGA-----------------------------------------AATATA-A---------------AAAACAAATCAAA--CAACAATATCCACAGAACACCA----------------------------------------------------C----AACCTT-----------ATGA-A-CTTTGCCATAGACCAGAATCTGAAAT------CCA---A------
droKik1 scf7180000302392:333410-333719 + TGGCGACTACTATACCGGCGGCTACTATAATGGATATGACTACGGTTATGGTAAATACAACAAACCACAT---AATAATGCTCAAAACAATTATTACAATAACAACACGTCG---AGTAATTACCATCCAAACAAGAACAATAG---CAACAACTATCAGCAGTTCTAAGTAG--TCT-AGCCGAAAAAAAACAAACAAAAACAG-CTG-----GCCAGCAA--AA-------------------------------------------------------------GAAAACAAAAACAACAACCTTAAATCAAG---CAAACAAAGCA-A--CAACAACACCTGCTGAATACCA----------------------------------------------------TAT-----TAT-----------TAAA-C-TTTTGCCATAGACCTGA-TCTGA--T------------TTGATCC
droFic1 scf7180000453906:28574-28854 + TGGCGACTACTATGCCGGCGGCTACTATAATGGATATGACTACGGTTATGGTAAATACAACAAAC---AA---AATAGTGCTCAAAACAATTATTACAATAACAACACGTCG---AGTAATTACCATCAAAACAAGAACAATAG---CAACAACTATCAGCAGTTCTAAGTAGAGCCG-AGCCACAA--------------AGAGGCTG-----GCCAGTAA--AA----------------------AATCAGA-----------------------------------------AACAAT--------ATCAAG---CAAACAAAGC------AACAACAACCGCAGTACACCA----------------------------------------------------TATG-AACTTT-----------TTAA-T-TTTTGCCATAGACCCGA-TCTGA--T------------A------
droEle1 scf7180000491047:1729086-1729366 + TGGCGACTACTATTCCGGCGGCTACTATAATGGATATGACTACGGTTATGGTAAATACAACAAACAACAA---AGTAGTGCTCAAAACAATTATTACAATAACAACACGTCG---AGTAATTACCATCAAAACAAGA---ATAG---CAACAACTATCAGCAGTTCTAAGTAGAGCCT-AGCCACAA--------------AAAGAATG-----GTCAGCAA--------------------------AATCAGA-----------------------------------------AAGAAA-A-----ATACAAG---CAAACAAAGC------AACAACAACCGCAGAACACCA----------------------------------------------------TATA-AACTTT-----------TTAA-T-TTTTGCCATAGACCCGA-TCTGA--T------------A------
droRho1 scf7180000778106:15484-15768 + TGGCGACTACTATTCCGGCGGCTACTATAATGGATATGACTACGGTTATGGTAAATACAACAAACAACAA---AGTAGTGCTCAAAACAATTATTACAATAACAACACGTCG---AGTAATTACCATCAAAACAAGAACAATAG---CAACAACTATCAGCAGTTCTAAGTAGAGCCT-AGCCACAA--------------AAAGACTG-----GCCAGCAA--------------------------AATCAGA-----------------------------------------AAGAAAAA-----AATCAAA---CAAACAAAGC------AACAACAACCGCAAAACACCA----------------------------------------------------TATA-AACTTT-----------TTAA-T-TTTTGCCATAGACCCGA-TCTGA--T------------A------
droBia1 scf7180000302402:2198170-2198453 - TGGCGACTACTATACCGGCGGCTACTATAATGGATATGACTACGGTTATGGTAAATACAACAAACAACAA---AGTAGTGCTCAGAACAATTATTACAATAACAACACGTCG---AGTAATTACCATCCAAACAAGAACAATAG---CAACAACTATCAGCAGTTCTAAGTAGAGCCT-AGCCGCAA--------------TCAG-CAG-----GCCAGCAA--AA----------------------AATCAGA-----------------------------------------AACAAA-A------AACAAG---CAAACAAAGC------AACAACAACCGCAAAACACCA----------------------------------------------------TATA-AACTCT-----------TTAA-T-TTTTGCCATAGACCTGA-TCTGA--T------------C------
droTak1 scf7180000415380:267366-267650 - TGGCGACTACTATACCGGCGGCTACTATAATGGATATGACTACGGTTATGGTAAATACAACAAACAACAA---AGTAGTGCTCAAAACAATTATTACAATAACAACACGTCG---AGTAATTACCATCAAAACAAGAACAATAG---CAACAACTATCAGCAGTTCTAAGTAGAGCCT-AGCCGCAA--------------TCAG-CAG-----GCCAGCAA--AG----------------------AATCAGA-----------------------------------------AACAAA-A-----AATCAAG---CAAACAAAGC------AACAACAACCGCAGAACACCA----------------------------------------------------TATA-AACTCT-----------TAAT-T-TTTTGCCATAGACCTGA-TCTGA--T------------C------
droEug1 scf7180000409802:507061-507366 + TGGCGACTACTATACCGGCGGCTACTATAATGGATATGACTACGGTTATGGTAAATACAACAAACAACAA---AGTAGTGCTCAAAACAATTATTACAATAACAACACGTCG---AGTAATTACCATCAAAACAAGAACAATAG---CAACAACTACCAGCAGTTCTAAGTAGAGCCT-AGCGGCAA--------------AAAG-CTG-----GCTAGCAA--AAAAAATATCCA-----------GAATCAGA-----------------------------------------AACAAA-------------A---CAAACAAAGCAAACCAAACAACAACTGCAGAACACCA------------------------------------------TACATATATATATA-AAATTC-----------TTAA-C-TTTTGCCATAGACCTGA-TATGA--A-----------------CC
dm3 chr3R:9467781-9468070 - TGGCGACTACTATGCCGGCGGCTACTATAATGGATATGACTACGGTTATGGTAAATACAACAAACAACAA---AGTAGTGCTCAAAACAATTATTACAATAACAACACGTCG---AGTAATTACCATCAAAACAAGAACAATAG---CAACAACTATCAGCAGTTCTAAGTAGAGCCTCAGCCGCAT--------------AGAG-CTGGCCTGGCCAGCAA-CAA----------------------AATCAGA-----------------------------------------AAGAAA-T-----AAT-------CAAACAAAGCAAA--CAACAACAACCGCAGAATA-------------------------------------------------------TAAA-AACCTT-----------CTAA-T-TTTTGCCATAGACCTGA-TCTGA--T-----------------CC
droSim2 3r:11711333-11711616 + dsi_12680 TGGCGACTACTATGCCGGCGGCTACTATAATGGATATGACTACGGTTATGGTAAATACAACAAACAACAA---AGTAGTGCTCAAAACAATTATTACAATAACAACACGTCG---AGTAATTACCATCAAAACAAGAACAATAG---CAACAACTATCAGCAGTTCTAAGTAGAGCTC-AGCCGCAT--------------A-AG-CTG-----GCCAGCAA-CAA----------------------AATCAGA-----------------------------------------AAAAAAAT-----AAT-------CAAACAAAGCAAA--CAACAACAACCGCAGAACA-------------------------------------------------------TAAA-AACCTT-----------CTTA-T-TTTTGCCATAGACCTGA-TCTGA--T-----------------CC
droSec2 scaffold_0:12539127-12539408 + dse_502 TGGCGACTACTATGCCGGCGGCTACTATAATGGATATGACTACGGTTATGGTAAATACAACAAACAACAA---AGTAGTGCTCAAAACAATTATTACAATAACAACACGTCG---AGTAATTACCATCAAAACAAGAACAATAG---CAACAACTATCAGCAGTTCTAAGTAGAGCTC-AGCCGCAT--------------AGAG-CTG-----GTCAGCAA-CAA----------------------AATCAGA-----------------------------------------AAAAAA-T-----AAT-------CAAACAAAGCAAA--CAACAACAACCGCAGAACA-------------------------------------------------------TAAAAAAC--------------CTAA-T-TTTTGCCATAGACCTGA-TCTGA--T-----------------CC
droYak3 3R:13776505-13776790 - dya_1031 TGGCGACTACTATGCCGGCGGCTACTATAATGGATATGACTACGGTTATGGTAAATACAACAAACAACAA---AGTAGTGCTCAAAGCAATTATTACAATAACAACACGTCG---AGTAATTACCATCAAAACAAGAACAATAG---CAACAACTATCAGCAGTTCTAAGTAGAGCTC-AGCCGCAT--------------AAAG-CTG-----ACCAGCAA--AA----------------------AATCAGA-----------------------------------------AAGAAA-T-----AATCAAG---CAAACAAAGCAAA--CAACAACAACCGCAGAACA-------------------------------------------------------TATA-ATCCTT-----------CTAA-T-TTTTGCCATAGACCTGA-TCTGA--T------------C------
droEre2 scaffold_4770:12167507-12167793 + der_607 TGGCGACTACTATGCCGGCGGCTACTATAATGGATATGACTACGGTTATGGTAAATACAACAAACAACAA---AGTAGTGCTCAAAGCAATTATTACAATAACAACACGTCG---AGTAATTACCATCAAAACAAGAACAATAG---CAACAACTATCAGCAGTTCTAAGTAGCGCTC-AGCCGTAT--------------AAAT-CTG-----G-CAGCAA--AAAA--------------------AATCAGA-----------------------------------------AAGAAA-T-----AATCAAG---CAAACAAAGCAAG--CAACAACAACCGCAGAACA-------------------------------------------------------TATA-AACCTT-----------CTAA-T-TTTTGCCATAGACCTGA-TCTGA--T------------C------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
CGGCGACTACTATGCCGGTGGCTATTATAATGGATATGACTACGGTTATGGTAAATACAACAAACAACAT---AATAATGCTCATAGCAACTATTACAATAACAACACGTCG---AGTAACTACCACCAAAACAAGAACAGTAGCAGCAACAACTACCAGCAGTTTTAAGTAG--------CCACAG------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCACCACAGACAGGCAACACCAATCACAGCAACAACCACCA-----------------GATT-AATT-A-----------TCAATTACTTTGCCATAGACCTGA-----A--T------------C------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTACTTTGCCATAGACCTGA-----A--T------------C------2412.0020010100000
....................................................................................................AACAACACGTCG---AGTAACTAC......................................................................................................................................................................................................................................................................................................................................................................2112.0020110000000
.................................................................................................AATAACAACACGTCG---AGTAACTACCA....................................................................................................................................................................................................................................................................................................................................................................2612.0020200000000
.......................ATTATAATGGATATGACTACGGTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020200000000
.........................................................................................................................................................................................AG------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCACCACAGACAGGC.....................................................................................................................1811.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................AATT-A-----------TCAATTACTTTGCCATAGACC...............................2611.0010010000000
.............................................................AAACAACAT---AATAATGCTCATAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010000000
...............................................................................................................................................................................................................................................................................................................................................................................CACCAATCACAGCAACAACCACCA-----------------GATT-A....................................................................2911.0010100000000
..............................................................................................................................................AGCAGCAACAACTACCAGCAGT..............................................................................................................................................................................................................................................................................................................................2211.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................AGACAGGCAACACCAATCACA........................................................................................................2111.0010100000000
.......TACTATGCCGGTGGCTATTAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100000
.........................................................................................................................................................................................AG------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCACCACAGACAGGCA....................................................................................................................1911.0010100000000
....................................................................................................AACAACACGTCG---AGTAACTACCAC...................................................................................................................................................................................................................................................................................................................................................................2411.0010010000000
...........................................................................................................................................................................AG--------CCACAG------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCACCACAGACAG.......................................................................................................................2211.0010010000000
..............................................................................................................................................AGCAGCAACAACTACCAGCAGTTTTAAGT.......................................................................................................................................................................................................................................................................................................................2911.0010010000000
....................................................................................................AACAACACGTCG---AGTAACTACCACC..................................................................................................................................................................................................................................................................................................................................................................2511.0010010000000
............................AATGGATATGACTACGGTTATGGTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000100000
......................................................................................................CAACACGTCG---AGTAACTACCACC..................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
..........................................................................................................................................................................TAG--------CCACAG------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCACCACAGACAGGCAAC..................................................................................................................2811.0010010000000
....................................................................................................................................................................TTTAAGTAG--------CCACAG------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCACCACAGA..........................................................................................................................2611.0010100000000
....................................................AAATACAACAAACAACAT---AATA.....................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
..........................ATAATGGATATGACTACGGTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTTTGCCATAGACCTGA-----A--T------------.......2111.0010010000000
......................................................................................................................................AGAACAGTAGCAGCAACAACTACCAGC.................................................................................................................................................................................................................................................................................................................................2711.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................ACACCAATCACAGCAACAACCACCA-----------------GATT-.....................................................................2911.0010100000000
..............................................................AACAACAT---AATAATGCTCATAGCAACTAT....................................................................................................................................................................................................................................................................................................................................................................................................2911.0010010000000
........................................................................................................................CTACCACCAAAACAAGAACAGT....................................................................................................................................................................................................................................................................................................................................................2211.0010010000000
....................................................AAATACAACAAACAACAT---AAT......................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
......................................................................................................................................AGAACAGTAGCAGCAACAAC........................................................................................................................................................................................................................................................................................................................................2011.0010001000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................CAATTACTTTGCCATAGACCTGA-----A--T------------C------2611.0010010000000
............................AATGGATATGACTACGGTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
..........................ATAATGGATATGACTACGGTTATGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
......................................................................................................................................................................................CACAG------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCACCACAGACAGGC.....................................................................................................................2111.0010010000000
..........................................................................................................................................CAGTAGCAGCAACAACTACCAGCAGTT.............................................................................................................................................................................................................................................................................................................................2711.0010010000000
......................................................................................................CAACACGTCG---AGTAACTA.......................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
..................................................................................................ATAACAACACGTCG---AGTAACTACCACC..................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
................................................................................................................................AAAACAAGAACAGTAGCAGCAA............................................................................................................................................................................................................................................................................................................................................2211.0010000100000
.........................TATAATGGATATGACTACGGTTATGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
.............................................................................................TTACAATAACAACACGTCG---AGT............................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
...................GGCTATTATAATGGATATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................ATT-A-----------TCAATTACTTTGCCATAGACCTGA-----.......................2811.0010010000000
..............................................................................................................................................AGCAGCAACAACTACCAGC.................................................................................................................................................................................................................................................................................................................................1911.0010000100000
.........................................................................................................................................ACAGTAGCAGCAACAACTACCAGC.................................................................................................................................................................................................................................................................................................................................2411.0010010000000
................................................................................................................................................................................................................................................................................................................................................................................................................................T-A-----------TCAATTACTTTGCCATAGACCTGA-----.......................2611.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................AGACAGGCAACACCAATCACAGCA.....................................................................................................2411.0010100000000
CGGCGACTACTATGCCGGTGGCTATT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010000000
.............................ATGGATATGACTACGGTTATGGTAA............................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
.........................................................................................................CACGTCG---AGTAACTACCACC..................................................................................................................................................................................................................................................................................................................................................................2011.0010010000000
.............................................................................................................................................................................................................................................................................................................................................................................AACACCAATCACAGCAACAAC................................................................................................2111.0010100000000
........................................................................................................ACACGTCG---AGTAACTACCACCAAA...............................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
.......................ATTATAATGGATATGACTACGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000010
...........................................................................................................................................................ACCAGCAGTTTTAAGTAG--------CCACA........................................................................................................................................................................................................................................................................................................2311.0010000100000
.............................ATGGATATGACTACGGTTATG................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
....GACTACTATGCCGGTGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................AATT-A-----------TCAATTACTTTGCCATAGACCT..............................2711.0010100000000
.........................................ACGGTTATGGTAAATACAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTTTGCCATAGACCTGA-----.......................1911.0010000100000
.............................................................................................................................................................................................................................................................................................................................................................................AACACCAATCACAGCAACAACCACCA-----------------..........................................................................2611.0010010000000
......................................................................................................................................................................................................................................................................................................................................................................................CACAGCAACAACCACCA-----------------GATT-.....................................................................2111.0010100000000
........................................................................................................................................................................AGTAG--------CCACAG------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCACCACAGAC.........................................................................................................................2311.0010010000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................AATT-A-----------TCAATTACTTTGCCATAGACCTGA-----.......................2911.0010010000000
droPer2
ACGTTCATACGT------------------------------------------------------------------------------CGATTTCAAGAACCACACTG-------AAACAACAACAAAAACAACAACAACAA---CAACAACAACAAAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACA-----------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....CATACGT------------------------------------------------------------------------------CGATTTCAAGAACCACACT.....................................................................................................................................................................................................................................................................................................................................................................................2618.008800000
..........GT------------------------------------------------------------------------------CGATTTCAAGAACCACACTG-------AAA..........................................................................................................................................................................................................................................................................................................................................................................2516.006600000
......ATACGT------------------------------------------------------------------------------CGATTTCAAGAACCACACT.....................................................................................................................................................................................................................................................................................................................................................................................2516.006600000
........ACGT------------------------------------------------------------------------------CGATTTCAAGAACCACACT.....................................................................................................................................................................................................................................................................................................................................................................................2314.004400000
......ATACGT------------------------------------------------------------------------------CGATTTCAAGAACC..........................................................................................................................................................................................................................................................................................................................................................................................2013.003300000
................................................................................................CAAGAACCACACTG-------AAAC.........................................................................................................................................................................................................................................................................................................................................................................1813.003300000
..........................................................................................CGATTTCAAGAACCACAC......................................................................................................................................................................................................................................................................................................................................................................................1813.003300000
......ATACGT------------------------------------------------------------------------------CGATTTCAAGAACCACACTG-------A............................................................................................................................................................................................................................................................................................................................................................................2712.002200000
..GTTCATACGT------------------------------------------------------------------------------CGATTTCAAGAACC..........................................................................................................................................................................................................................................................................................................................................................................................2412.002200000
..GTTCATACGT------------------------------------------------------------------------------CGATTTCAAGAACCACACT.....................................................................................................................................................................................................................................................................................................................................................................................2912.002200000
.....CATACGT------------------------------------------------------------------------------CGATTTCAAGAACCACACG.....................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
.....CATACGT------------------------------------------------------------------------------CGATTTCAAGAACC..........................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.................................................................................................AAGAACCACACTG-------AAACAAC......................................................................................................................................................................................................................................................................................................................................................................2011.001010000
..GTTCATACGT------------------------------------------------------------------------------CGATTTCAAGAA............................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
.....CATACGT------------------------------------------------------------------------------CGATTTCAAGAACCACACTG-------AA...........................................................................................................................................................................................................................................................................................................................................................................2911.001100000
..........GT------------------------------------------------------------------------------CGATTTCAAGAACCACAC......................................................................................................................................................................................................................................................................................................................................................................................2011.001001000
...............................................................................................TCAAGAACCACACTG-------AAACAACAACAA.................................................................................................................................................................................................................................................................................................................................................................2711.001010000
........ACGT------------------------------------------------------------------------------CGATTTCAAGAACCACACTG-------AAAC.........................................................................................................................................................................................................................................................................................................................................................................2811.001010000
..........................................................................................CGATTTCAAGAACCACACTG-------AAA..........................................................................................................................................................................................................................................................................................................................................................................2311.001100000
.....CATACGT------------------------------------------------------------------------------CGATTTCAAGAACCACACC.....................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
................................................................................................CAAGAACCACACTG-------AAACAACAACAAA................................................................................................................................................................................................................................................................................................................................................................2711.001010000
..........................................................................................CGATTTCAAGAACCACACTG-------A............................................................................................................................................................................................................................................................................................................................................................................2111.001001000
..........................................................................................CGATTTCAAGAACCACACTG-------AAAC.........................................................................................................................................................................................................................................................................................................................................................................2411.001100000
..........GT------------------------------------------------------------------------------CGATTTCAAGAACCACACT.....................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.....CATACGT------------------------------------------------------------------------------CGATTTCAAGAACCACACTG-------A............................................................................................................................................................................................................................................................................................................................................................................2811.001100000
..........................................................................................CGATTTCAAGAACCACACT.....................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
...TTCATACGT------------------------------------------------------------------------------CGATTTCAAGAACCACAA......................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
...............................................................................................TCAAGAACCACACTG-------AAACAACAACA..................................................................................................................................................................................................................................................................................................................................................................2611.001010000
.......TACGT------------------------------------------------------------------------------CGATTTCAAGAACC..........................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
...................................................................................................................................ACAACAACAACAA---CAACAACAACAA...................................................................................................................................................................................................................................................................................................................................25200.051010000
droWil2
CGGTGATTACTATACCGGTGGCTACTATAACGGATATGACTACGGTTATGGTAAATACAACAAACAACAT---AATAATGCTCATACCAATTATTACAATAACAACACGTCGTCAAGTAATTATCATCAGACCAAGAACAATAG---CAACAACTATCAGCAGTTTTAATT------A-AGTA----------------------------------AACAT-------AA----------------GTGTCGGGCATAACCAATAACAACAACAACAACAGCAACAGCA-GCAACAACAACATCATCAAATCACA---CAATC-----------AA---------CAGAAAA-------------------------------------------------------AAAA-AG-------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................................................................................................................................................................T------A-AGTA----------------------------------AACAT-------AA----------------GTGTCGGGC..................................................................................................................................................................................................................................22111.001101280
.................................................................................................................................................................................A-AGTA----------------------------------AACAT-------AA----------------GTGTCGGGC..................................................................................................................................................................................................................................2115.00500230
....GATTACTATACCGGTGGCTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2015.00500140
....................................................................................................................................................................................GTA----------------------------------AACAT-------AA----------------GTGTCGGGC..................................................................................................................................................................................................................................1914.00400040
.................................ATATGACTACGGTTATGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................1913.00300120
..............................................................................................................................TCAGACCAAGAACAATAG---CAACAAC........................................................................................................................................................................................................................................................................................................................................2513.00330000
............................................................................................ATTACAATAACAACACGTC...................................................................................................................................................................................................................................................................................................................................................................................1913.00300030
........................................................................................................................................................................ATT------A-AGTA----------------------------------AACAT-------AA----------------GTGTCGGGC..................................................................................................................................................................................................................................2413.00300030
......................................................................................................................................AGAACAATAG---CAACAACT.......................................................................................................................................................................................................................................................................................................................................1822.50550000
......................................................................................................................................................................TAATT------A-AGTA----------------------------------AACAT-------AA----------------GTGTCGGGC..................................................................................................................................................................................................................................2612.00210010
...........................................................................................................................................................ATCAGCAGTTTTAATT------A-AGT............................................................................................................................................................................................................................................................................................................2012.00200020
..........................................................................................................................................................................T------A-AGTA----------------------------------AACAT-------AA----------------GTGTCGGGCATAACC............................................................................................................................................................................................................................2812.00211000
............................................................................................................................................................................................................................AT-------AA----------------GTGTCGGGCATAACCA...........................................................................................................................................................................................................................2012.00200020
......................................................................................................................................................................................A----------------------------------AACAT-------AA----------------GTGTCGGGCATAACC............................................................................................................................................................................................................................2312.00200200
........................................................................................................................................................................ATT------A-AGTA----------------------------------AACAT-------AA----------------GTGT.......................................................................................................................................................................................................................................1912.00200020
....GATTACTATACCGGTGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00200020
...................................................................................................................................................................................AGTA----------------------------------AACAT-------AA----------------GTGTCGGGC..................................................................................................................................................................................................................................2012.00200020
...................GGCTACTATAACGGATATGAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00210010
.....................................................................................................................................................................TTAATT------A-AGTA----------------------------------AACAT-------AA----------------GTGTCGGGC..................................................................................................................................................................................................................................2712.00200020
........................................................................................................................................................................................................................................................................................AGCAACAGCA-GCAACAACAACATCATC..............................................................................................................................................................................2711.00100010
...............................................................................................................................CAGACCAAGAACAATAG---CAAC...........................................................................................................................................................................................................................................................................................................................................2111.00100010
...................................................................................................................................................................................AGTA----------------------------------AACAT-------AA----------------GTGTCGG....................................................................................................................................................................................................................................1811.00100010
...........................................................................................................................................AATAG---CAACAACTATCAGCAGT..............................................................................................................................................................................................................................................................................................................................2211.00101000
............................................................................................................................................................................................................................AT-------AA----------------GTGTCGGGCATAACC............................................................................................................................................................................................................................1911.00110000
........ACTATACCGGTGGCTACTATAACGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010
.......................ACTATAACGGATATGACT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000
..............................CGGATATGACTACGGTTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000
.................................................................................................................................................................................................................................................................................................................ATCAAATCACA---CAATC-----------AA---------CA......................................................................................................................................2011.00100010
.........................................................................................................................TATCATCAGACCAAGAACAAT....................................................................................................................................................................................................................................................................................................................................................2111.00100001
....GATTACTATACCGGTGGCTACTATAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000
.................................................................................................................................................................................A-AGTA----------------------------------AACAT-------AA----------------GTGTCGGGCATAACCA...........................................................................................................................................................................................................................2811.00100100
.................................................................................................AATAACAACACGTCGTCAAGTAATTAT......................................................................................................................................................................................................................................................................................................................................................................2711.00110000
..............................................................................................................CGTCAAGTAATTATCATCA.................................................................................................................................................................................................................................................................................................................................................................1911.00101000
.................................................................................................................................................................................A-AGTA----------------------------------AACAT-------AA----------------GTGTCGGGCATAAC.............................................................................................................................................................................................................................2611.00100010
......................................................................................................CAACACGTCGTCAAGTAA..........................................................................................................................................................................................................................................................................................................................................................................1811.00100010
.....................................................................................................................................................................................TA----------------------------------AACAT-------AA----------------GTGTCGGGA..................................................................................................................................................................................................................................1811.00100010
.......................................................................................................................................................................AATT------A-AGTA----------------------------------AACAT-------AA----------------GTGTCGGGC..................................................................................................................................................................................................................................2511.00100010
...................................................................................................................................................................................AGTA----------------------------------AACAT-------AA----------------GTGTCGGG...................................................................................................................................................................................................................................1911.00100010
....................................................................................................AACAACACGTCGTCAAGTAATT........................................................................................................................................................................................................................................................................................................................................................................2211.00101000
............................AACGGATATGACTACGGTTATGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
................................................................................................................................................................................................................................................................................................................CATCAAATCACA---CAATC-----------AA---------CAGA....................................................................................................................................2311.00100010
....GATTACTATACCGGTGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
...........................................................................................................................................................................................................................................................................................................AACATCATCAAATCACA---CAATC-----------...................................................................................................................................................2211.00100010
.........................................................................................................................................................................................................................AACAT-------AA----------------GTGTCGGGCATAACCA...........................................................................................................................................................................................................................2311.00100010
.GGTGATTACTATACCGGTGGCTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
...................................................................................................................................................CAACAACTATCAGCAGTTTTAATT------.................................................................................................................................................................................................................................................................................................................2411.00101000
...TGATTACTATACCGGTGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
...............................................................................................................................................G---CAACAACTATCAGCAGTT.............................................................................................................................................................................................................................................................................................................................1911.00100010
........................................................................................................................TTATCATCAGACCAAGAAC.......................................................................................................................................................................................................................................................................................................................................................1911.00100010
.............................ACGGATATGACTACGGTTATGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000
......................................................................................................................................................................................A----------------------------------AACAT-------AA----------------GTGTCGGGCATAACCAA..........................................................................................................................................................................................................................2511.00100010
....................................................................................................................GTAATTATCATCAGACCAAGAACAAT....................................................................................................................................................................................................................................................................................................................................................2611.00100010
.................................................................................................................................................................................A-AGTA----------------------------------AACAT-------AA----------------GTGTCGGGCAT................................................................................................................................................................................................................................2311.00101000
................................GATATGACTACGGTTATGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
..............................................................................................................................................AG---CAACAACTATCAGCAGT..............................................................................................................................................................................................................................................................................................................................1911.00100010
.....................CTACTATAACGGATATGACTACG......................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
...................GGCTACTATAACGGATATGACT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
............................AACGGATATGACTACGGTTATGGTAAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000
...........................TAACGGATATGACTACGGTTAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
....................................................................................................AACAACACGTCGTCAAGTA...........................................................................................................................................................................................................................................................................................................................................................................1911.00100010
..........................................................................................................................ATCATCAGACCAAGAACAATAG---CAACAAC........................................................................................................................................................................................................................................................................................................................................2911.00110000
......................................................................................................................................................................................A----------------------------------AACAT-------AA----------------GTGTCGGGCA.................................................................................................................................................................................................................................1811.00100100
.................................................................................................................................................................................A-AGTA----------------------------------AACAT-------AA----------------GTGTCGGGCATAACC............................................................................................................................................................................................................................2711.00100010
..........................................................................................................................................................................T------A-AGTA----------------------------------AACAT-------AA----------------GTGTCGG....................................................................................................................................................................................................................................2011.00100100
............................AACGGATATGACTACGGTTATG................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
.....ATTACTATACCGGTGGCTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
..........................................................................................................................................................................................................................ACAT-------AA----------------GTGTCGGGCATAAC.............................................................................................................................................................................................................................2011.00100010
...................................................................................................................................................................................................................................................................................................................CAAATCACA---CAATC-----------AA---------CAGAA...................................................................................................................................2111.00100010
............................................................................................................................CATCAGACCAAGAACAATAG---CAACAACT.......................................................................................................................................................................................................................................................................................................................................2811.00110000
.......................................................................................................AACACGTCGTCAAGTAATTATCATC..................................................................................................................................................................................................................................................................................................................................................................2511.00110000
...........................................................................................TATTACAATAACAACACGTCGTC................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
............................................................................................ATTACAATAACAACACGTCGTC................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
............................................................................................................................................................................................................................AT-------AA----------------GTGTCGGGCATAACCAA..........................................................................................................................................................................................................................2111.00100100
...TGATTACTATACCGGTGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000
.............................................................................................................................................................................................................................................................................................CAGCA-GCAACAACAACATCATC..............................................................................................................................................................................2280.13100010
..................................................................................................................................................................................................................................................................................AACAACAGCAACAGCA-GCAACAA........................................................................................................................................................................................23200.10202000
............................................................................................................................................................................................................................................................................AACAACAACAACAGCAACAGCA-GCAAC..........................................................................................................................................................................................27130.08100010
...........................................................................................................................................................................................................................................................................CAACAACAACAACAGCAACAGCA-GCAA...........................................................................................................................................................................................27160.06100010
...............................................................................................................................................................................................................................................................................AACAACAACAGCAACAGCA-GCAACAA........................................................................................................................................................................................26190.05100010
..............................................................................................................................................................................................................................................................................CAACAACAACAGCAACAGCA-GCAACA.........................................................................................................................................................................................26200.05100010
...........................................................................................................................................................................................................................................................................CAACAACAACAACAGCAACAGCA-GCA............................................................................................................................................................................................26200.05100010
..............................................................................................................................................................................................................................................................................CAACAACAACAGCAACAGCA-GCAAC..........................................................................................................................................................................................25200.05100010
...............................................................................................................................................................................................................................................................................AACAACAACAGCAACAGCA-GCAACA.........................................................................................................................................................................................25200.05100010
.................................................................................................................................................................................................................................................................................CAACAACAGCAACAGCA-GCAAC..........................................................................................................................................................................................22200.05100010
........................................................................................................................................................................................................................................................................TAACAACAACAACAACAGCAA.....................................................................................................................................................................................................21200.05100010
................................................................................................................................................................................................................................................................................ACAACAACAGCAACAGCA-GCAAC..........................................................................................................................................................................................23200.05100010
droVir3
TGCCGATTACTATGCCGGTGGCTACTATAATGGATATGACTATGGTTATGGTAAATACAACAAACAACAA---AATAATGCTCATAACAATTATTATAATAACACAACGTCA---AGTAATTATCATCAAAACAAGAACAATAG---CAACAACTATCAGCAGTTCTAA------TCT-AGCTAAAT--------------AC----AG-----G----CAA-CAA----------------------AAG--------------------------------------------------------------------CAAAC-----AAA--CAACCACAACAACAATAAA---------------------------------CAA-AAATGCCAT-------TATACA-ACATTT--------------------------------------TGA--A-----------------ACSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............................AATGGATATGACTATGGTTATGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................2413.003001100000000000000000000000000000000000000000000000000000001000
..........................ATAATGGATATGACTATGGTTAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................2313.003001000000001000100000000000000000000000000000000000000000000000
...............................................................................................ATAATAACACAACGTCA---AGTAATT........................................................................................................................................................................................................................................................................................................................................................................2412.002002000000000000000000000000000000000000000000000000000000000000
............................AATGGATATGACTATGGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002000000000020000000000000000000000000000000000000000000000000000
.............................ATGGATATGACTATGGTTATGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................2312.002000000020000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................AA--CAACCACAACAACAATAAA---------------------------------CA..............................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................ATGCTCATAACAATTATTATAATA.............................................................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................AAA---------------------------------CAA-AAATGCCAT-------TATAC.......................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................AGTTCTAA------TCT-AGCTAAAT--------------AC----AG-----G----C......................................................................................................................................................................................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
...CGATTACTATGCCGGTGGCTAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000100000000000000000000000000000000000000
.................................................................................................................................................................................................................................A----------------------AAG--------------------------------------------------------------------CAAAC-----AAA--CAACCACAACAAC.......................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................A----------------------AAG--------------------------------------------------------------------CAAAC-----AAA--CAACCACAACAACA......................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................ATTATAATAACACAACGTCA---AGT............................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................AACCACAACAACAATAAA---------------------------------CAA-AAA.........................................................................................2411.001000000000000000100000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................AAG--------------------------------------------------------------------CAAAC-----AAA--CAACCACAAC..........................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
....GATTACTATGCCGGTGGCTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000010000000000000000000000000000000000000000000000000
........ACTATGCCGGTGGCTACTAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000100000000000000000000000000
......TTACTATGCCGGTGGCTACTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.......................................CTATGGTTATGGTAAATAC........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................ATCAGCAGTTCTAA------TCT-AGCTAAAT--------------.........................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000001
...........................................................ACAAACAACAA---AATAATGCTC...............................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000100000000000000000000000000000000000
...............................................................................................................................................................GCAGTTCTAA------TCT-AGCTA..........................................................................................................................................................................................................................................................................................................1811.001000000000000000000000010000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................AG--------------------------------------------------------------------CAAAC-----AAA--CAACCACAACA.........................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................AACAATAG---CAACAACTATCAGC.................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
................GGTGGCTACTATAATGGATATGACT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................AA------TCT-AGCTAAAT--------------AC----AG-----G----CAA-C..................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
............................AATGGATATGACTATGGTTATGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000010000000000000000000000000000000000000000000000000
.................................................................................................................................AAACAAGAACAATAG---CAACA..........................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000001000000000000000000000000000
.......................................................................................................................................................................AA------TCT-AGCTAAAT--------------AC----AG-----G----C......................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................AAT--------------AC----AG-----G----CAA-CAA----------------------AAG--------------------------------------------------------------------CAAA...............................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000001000
..................................................................ACAA---AATAATGCTCATAACA.........................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................TATAATAACACAACGTCA---AGTAATTA.......................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000100000000000000000000000000000000
..........................ATAATGGATATGACTATGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000001000000000000000000000000000000000000
.............................................................................................................................................TAG---CAACAACTATCAGCAGTTCTAA------TC.................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000001000000000000000000000000000000000
.....................................................................................................................................AAGAACAATAG---CAACAACT.......................................................................................................................................................................................................................................................................................................................................1911.001000000000000000010000000000000000000000000000000000000000000000
...................................................TAAATACAACAAACAACAA---AATAATGC.................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000100000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................TAAA---------------------------------CAA-AAATGCCAT-------TATA........................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................CAA----------------------AAG--------------------------------------------------------------------CAAAC-----AAA--CAACCAC.............................................................................................................................................2111.001000100000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................ACAACTATCAGCAGTTCTAA------T..................................................................................................................................................................................................................................................................................................................2111.001000000000000001000000000000000000000000000000000000000000000000
.................................................................................................................................AAACAAGAACAATAG---CAACAACT.......................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
...............................GGATATGACTATGGTTATGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................G--------------------------------------------------------------------CAAAC-----AAA--CAACCACAAC..........................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................ATAACACAACGTCA---AGTAATTATC.....................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000100000000000000000000000000000
...................................................................................................................................ACAAGAACAATAG---CAACAACTATCAGC.................................................................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
......TTACTATGCCGGTGGCTACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000100000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................CAATAAA---------------------------------CAA-AAATGCCAT-------TATACA-AC...................................................................2711.001000000000000000000000000000010000000000000000000000000000000000
.....................................................................A---AATAATGCTCATAACAAT.......................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000100000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................AAAC-----AAA--CAACCACAACAACA......................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.........CTATGCCGGTGGCTACTATAATGGATATGACTATGGTTATG................................................................................................................................................................................................................................................................................................................................................................................................................................................4111.001000000000000000000000000000000000000000000000000000001000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................TGCCAT-------TATACA-ACATTT--------------------------------------TGA--A-----------------AC2411.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................TTCTAA------TCT-AGCTAAAT--------------AC----...................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000010000000000000000000000000
........................................................................................................................................................................................AAT--------------AC----AG-----G----CAA-CAA----------------------AAG--------------------------------------------------------------------C..................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................ATAATGCTCATAACAATTAT....................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
......................................................................................................................................................................TAA------TCT-AGCTAAAT--------------AC----AG-----G----CAA-CAA----------------------AA........................................................................................................................................................................................................................................2711.001000000000000000000000000000100000000000000000000000000000000000
............................AATGGATATGACTATGGTTATGGTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000001000
droMoj3
TGCCGATTACTATGCCGGTGGCTACTATAATGGATATGACTATGGTTATGGTAAATACAACAAACAACAT---AATAATACTCATAACAATTATTACAATAACCCAACGTCA---AGTAACTATCATCAAAACAAGAACAATAG---CAACAACTATCAGCAGTTTTAA-TA-----T-AGCCAAAT-----------------G-CAG-----GCA-ACAA--AC------------------------------------AATGCAAAT----------------GAAAGCAAAAACAAAAACA--AAATCCAA---CAAAC-----------AACAACTACAACAATAAA---------------------------------CAAAAAATGCCAT-------TATACA-ACATTTTGAAAACAAATTTCC-C-TTCTATCATACACAAAA----------GAAAATTATATA------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
............................................................................................ATTACAATAACCCAACGTCA---AGT............................................................................................................................................................................................................................................................................................................................................................................2312.002200000
......................................................................................................................................................................TAA-TA-----T-AGCCAAAT-----------------G-CAG-----G...........................................................................................................................................................................................................................................................................1912.002200000
....................................................................................................................................CAAGAACAATAG---CAACAACT.......................................................................................................................................................................................................................................................................................................................................2012.002200000
...............................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTGAAAACAAATTTCC-C-TTC..........................................2312.002100010
..............................................................................................................................................................................................................................................................................................................................................................AAA---------------------------------CAAAAAATGCCAT-------TATACA-AC...................................................................2412.002200000
........................CTATAATGGATATGACTATGGTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.002100001
...........................................................................................................................................................................................................................................................................................................................................................................................................................A-ACATTTTGAAAACAAATTTCC-C-TTCTAT.......................................2911.001100000
.................................................................................................AATAACCCAACGTCA---AGTAACTATCATCA.................................................................................................................................................................................................................................................................................................................................................................2911.001100000
............................................................................................................................................................................................................................................................................................................................................................ATAAA---------------------------------CAAAAAATGCCAT-------TATACA-ACAT.................................................................2811.001100000
...................GGCTACTATAATGGATATGACT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
.................................................................................................................................AAACAAGAACAATAG---CAACAACTATCAGC.................................................................................................................................................................................................................................................................................................................................2911.001100000
..................................TATGACTATGGTTATGGTAAATACAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAAACAAATTTCC-C-TTCT.........................................2111.001100000
.........................................................................AATAATACTCATAACAATT......................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................AATGCCAT-------TATACA-ACATT................................................................1911.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................ACATTTTGAAAACAAATTTCC-C-TTCT.........................................2611.001100000
.....................................................................................................ACCCAACGTCA---AGTAACTAT......................................................................................................................................................................................................................................................................................................................................................................2011.001001000
...............................................ATGGTAAATACAACAAACAACAT---AATA.....................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
...........................................................................................................................................................................................................................................................................................................AAAAACA--AAATCCAA---CAAAC-----------AACAA..............................................................................................................................................2511.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................CAT-------TATACA-ACATTTTGAAA..........................................................2011.001100000
.GCCGATTACTATGCCGGTGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
....................GCTACTATAATGGATATGACTATGGTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
.........CTATGCCGGTGGCTACTATAATGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
....................................................................................................................................................................TTTAA-TA-----T-AGCCAAAT-----------------G-CAG-----GCA-ACA.....................................................................................................................................................................................................................................................................2611.001100000
.............................ATGGATATGACTATGGTTATGGTAAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
......................................................................................................................................................................................................................GCA-ACAA--AC------------------------------------AATGCAAAT----------------GAAAGCAA...........................................................................................................................................................................................2611.001100000
............................................................................................................................................................................................................................................................................................................AAAACA--AAATCCAA---CAAAC-----------AACAACTACA.........................................................................................................................................2911.001000010
........................................................................................................................................................................................................................A-ACAA--AC------------------------------------AATGCAAAT----------------GAAA...............................................................................................................................................................................................2011.001100000
..............................................................................................................................................AG---CAACAACTATCAGCAGTTTTAA-TA-----.................................................................................................................................................................................................................................................................................................................2611.001100000
..................................................................................................................................................................GTTTTAA-TA-----T-AGCCAAAT-----------------G-CAG-----GCA-ACAA--..................................................................................................................................................................................................................................................................2911.001100000
.......................................................TACAACAAACAACAT---AATAATACTCA..............................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
..............................................................................................................................................AG---CAACAACTATCAGCAGT..............................................................................................................................................................................................................................................................................................................................1911.001000001
....................................................AAATACAACAAACAACAT---AATA.....................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
.........CTATGCCGGTGGCTACTATA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
....................................................................................................AACCCAACGTCA---AGTAACTATCA....................................................................................................................................................................................................................................................................................................................................................................2311.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................AATGCCAT-------TATACA-ACATTTTGAA...........................................................2411.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................AAAAAATGCCAT-------TATACA-AC...................................................................2011.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................TGCCAT-------TATACA-ACATTTTGA............................................................2111.001100000
.....ATTACTATGCCGGTGGCTACTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
......................................................................................................................................................................................................................................................................................................................................................ACAACAATAAA---------------------------------CAAAAAATGCCAT-------T...........................................................................2511.001100000
..............................................................................................................CA---AGTAACTATCATCAAAA..............................................................................................................................................................................................................................................................................................................................................................1911.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................T-------TATACA-ACATTTTGAAAAC........................................................2011.001100000
............................AATGGATATGACTATGGTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
..........................................................................................................................................................TATCAGCAGTTTTAA-TA-----T-AGCC...........................................................................................................................................................................................................................................................................................................2211.001100000
..........................................................................................................................................................................................................................................................................................................................AA---CAAAC-----------AACAACTACAACA......................................................................................................................................2030.331100000
droGri2
TGCCGATTACTATGCCGGTGGCTACTATAATGGATATGACTATGGTTATGGTAAATACAACAAACAACATAATAATAATGCTCATAACAGTT--TATAATAACACAACGACA---AGTAATTACCATCAAAACAAGAACAATAG---CAACAACTATCAGCAGTTCTAATG------T-AGCTAAAT-----------------A-CTG-----GC----AA-CAA----------------------AA---------------------------------------------------------------------CAAACAAA-CATA--CAACAAGAACTACAACA------------------------------ATAAACAA-AAATGCCAT-------TATACA-ACATTTTGAA-ATATCTTTTC-C-CTTTACCATACAT--------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
....GATTACTATGCCGGTGGCTACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110
.........................................................................................................................................................................................................................................................A---------------------------------------------------------------------CAAACAAA-CATA--CAACAAGAACTAC.......................................................................................................................................2611.00110
......................................................................................................................................AGAACAATAG---CAACAACTATCAGCAGTT.............................................................................................................................................................................................................................................................................................................................2811.00110
droAna3
TGGCGACTACTACGCCGGCGGCTACTATAATGGATATGACTACGGTTATGGTAAATACAACAAAC---AT---AATAATGCTCAAAGCAACTATTACAATAACAATGCGTCG---AGTAATTACCATCAAAACAAGAACAATAG---CAACAACTATCAGCAGTTCTAAAA-----TT-AGCC----------------------------------AATAAACAA--AAAA--CAAAACAAAAAATAAGGC-------------------------------------------------------------AAACAAAAAACAAATCAAG--CAACAAT--CCACAGAACACCA----------------------------------------------------C--A-AACTAA-----------ATCA-A-CTTTGCCATAGACCAGA-TCCAA--AAAAAAA--------TATCCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................................................................................................................................................................................................................................................................................................................................AAG--CAACAAT--CCACAGAACACCA----------------------------------------------------C--.......................................................................2412.002020000
.........................................................................................................................................................................................................................................................................................................................AAACAAAAAACAAATCAAG--CAACA...............................................................................................................................................2412.002020000
.............................................................................................................................................................................................................................................................................................................................AAAAAACAAATCAAG--CAAC................................................................................................................................................1912.002020000
...............................................................................................................................................................................................................................................................................................................................................................................................................................CTAA-----------ATCA-A-CTTTGCCATA...................................1912.002110000
.............................................................................................................................................................................................................................................AACAAAAAATAAGGC-------------------------------------------------------------AAAC.....................................................................................................................................................................1912.002020000
.........................................................................................................................TACCATCAAAACAAGAACAATAG---CAAC...........................................................................................................................................................................................................................................................................................................................................2711.001010000
...........................TAATGGATATGACTACGGTTATGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000010
................................................................................................................................................................CAGTTCTAAAA-----TT-AGCC----------------------------------AATAAAC..................................................................................................................................................................................................................................................................2411.001010000
................GGCGGCTACTATAATGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
......................................................................................................................................................................................................................................................................................................................................ATCAAG--CAACAAT--CCACAGAACACC...............................................................................................................................2511.001010000
...................................................................................................................................................................................................................................................................................................................................CAAATCAAG--CAACAAT--CCACAGA....................................................................................................................................2311.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................A-CTTTGCCATAGACCAGA-TC.........................2011.001010000
...........................................................................................................................................................................................................................................................................................................................................G--CAACAAT--CCACAGAACACCA----------------------------------------------------C--A-.....................................................................2311.001010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................AA-----------ATCA-A-CTTTGCCATAGACC...............................2111.001010000
......................................................................................................................................................................TAAAA-----TT-AGCC----------------------------------AATAAACAA--A.............................................................................................................................................................................................................................................................2111.001010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCATAGACCAGA-TCCAA--....................1911.001001000
.......................................................................................CAACTATTACAATAACAATGCGTCG---AGT............................................................................................................................................................................................................................................................................................................................................................................2811.001010000
................GGCGGCTACTATAATGGATATGAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
...........................................................................................TATTACAATAACAATGCGTCG---A..............................................................................................................................................................................................................................................................................................................................................................................2211.001000010
...............................................................................................................................................................................................................................................................................................................................................................CACCA----------------------------------------------------C--A-AACTAA-----------ATCA-A-CTTTGC.......................................2411.001010000
.............................ATGGATATGACTACGGTTATGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
.......................................................................................................................................................................................................................................A--CAAAACAAAAAATAAGGC-------------------------------------------------------------A........................................................................................................................................................................2011.001010000
.....................................................................................................................................................................................................................................................ATAAGGC-------------------------------------------------------------AAACAAAAAACAAATCAAG--C...................................................................................................................................................2711.001010000
.................................................................................................................................................................................................................................................................................................................................................CAAT--CCACAGAACACCA----------------------------------------------------C--A-AAC..................................................................2211.001010000
..................................................................................................................................................................................................................................................................................................................................................AAT--CCACAGAACACCA----------------------------------------------------C--A-AA...................................................................2011.001010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................A-----------ATCA-A-CTTTGCCATAGACCA..............................2111.001100000
....GACTACTACGCCGGCGGCTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
........................................................................................AACTATTACAATAACAATGCGTCG---AGT............................................................................................................................................................................................................................................................................................................................................................................2711.001010000
.............................................................................................................................................................CAGCAGTTCTAAAA-----TT-AGC............................................................................................................................................................................................................................................................................................................1911.001010000
.........................................................................................................TGCGTCG---AGTAATTACCATCAAAAC.............................................................................................................................................................................................................................................................................................................................................................2511.001010000
............................................................................................ATTACAATAACAATGCGTCG---AGC............................................................................................................................................................................................................................................................................................................................................................................2311.001010000
.................................................................................................................................................................................................................................................................................................................................AACAAATCAAG--CAACAAT--CCACAGAACAC................................................................................................................................2911.001010000
...........................................................................................TATTACAATAACAATGCGTCG---AGT............................................................................................................................................................................................................................................................................................................................................................................2411.001010000
...........................................................................................................................................................................................................................................................................................................................................G--CAACAAT--CCACAGAACACCA----------------------------------------------------C--A-AACTA................................................................2811.001010000
...............................................................................................................................CAAAACAAGAACAATAG---CAACAACT.......................................................................................................................................................................................................................................................................................................................................2511.001010000
.....................................................................................................................................AAGAACAATAG---CAACAACT.......................................................................................................................................................................................................................................................................................................................................1911.001010000
............................................................................................ATTACAATAACAATGCGTC...................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
...........................................................................................................................................................ATCAGCAGTTCTAAAA-----TT-AGCC----------------------------------.........................................................................................................................................................................................................................................................................2211.001010000
....................................................................................................................................................................................................................................................................................................................................AAATCAAG--CAACAAT--CCACA......................................................................................................................................2011.001000010
....GACTACTACGCCGGCGGCTACTATAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................A-AACTAA-----------ATCA-A-CTTTGCCATA...................................2211.001001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................A-AACTAA-----------ATCA-A-CTTTGCCATAGACCA..............................2711.001100000
..............................................................................................TACAATAACAATGCGTCG---AGTAATT........................................................................................................................................................................................................................................................................................................................................................................2511.001010000
.......................................CTACGGTTATGGTAAATAC........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
..............................................................................................................................................AG---CAACAACTATCAGCAGTT.............................................................................................................................................................................................................................................................................................................................2011.001001000
....................................................................................................AACAATGCGTCG---AGTAATTACC.....................................................................................................................................................................................................................................................................................................................................................................2211.001000010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................A-CTTTGCCATAGACCAGA-TCCAA--AAAA................2711.001010000
..................................................................................................................................................................................................................................................................................................................................................AAT--CCACAGAACACCA----------------------------------------------------C--A-AACTAA-----------AT..................................................2611.001010000
............................................................................................ATTACAATAACAATGCGTCG---T..............................................................................................................................................................................................................................................................................................................................................................................2111.001000010
..............................................................................................................................................................................................................................................................................................................................AAAAACAAATCAAG--CAACAAT--C..........................................................................................................................................2211.001010000
..........................................................................................................................................CAATAG---CAACAACTATCAGC.................................................................................................................................................................................................................................................................................................................................2011.001010000
..........................................................................................................................................................................................................................................................GC-------------------------------------------------------------AAACAAAAAACAAATCAAG--C...................................................................................................................................................2211.001010000
...............................................................................................ACAATAACAATGCGTCG---AGT............................................................................................................................................................................................................................................................................................................................................................................2011.001010000
.......................................................................................................................................................................................................................................................................................................................................TCAAG--CAACAAT--CCACAGAACACCA----------------------------------------------------C--.......................................................................2611.001010000
........................................................................................................................................................................................................................................................................................................................................CAAG--CAACAAT--CCACAGAAC..................................................................................................................................2011.001010000
......................................................ATACAACAAAC---AT---AATAAT...................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TCA-A-CTTTGCCATAGACCAGA-TCCA.......................2511.001000001
.............................................................................................................................................................................................................................................................................................................................................................................................................................AACTAA-----------ATCA-A-CTTTGCCATA...................................2111.001010000
........................................TACGGTTATGGTAAATACAACAAAC---..............................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
........................................................................................................................................................................................................................................................................................................................................CAAG--CAACAAT--CCACAGAACACCA----------------------------------------------------C--.......................................................................2511.001010000
...............................................................................................................................................................................................................................................................................................................................................AACAAT--CCACAGAACACCA----------------------------------------------------C--A-AACT.................................................................2511.001010000
............................................................................................ATTACAATAACAATGCGTCG---AGT............................................................................................................................................................................................................................................................................................................................................................................2311.001010000
....GACTACTACGCCGGCGGCTACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................A-AACTAA-----------ATCA-A-CTTTGCCATAGACC...............................2611.001010000
.....................................................................................................ACAATGCGTCG---AGTAATTACCATCA.................................................................................................................................................................................................................................................................................................................................................................2511.001010000
....GACTACTACGCCGGCGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000
.................................................................................................................................................................................................................................................................................................................................AACAAATCAAG--CAACAAT--CC.........................................................................................................................................2011.001010000
...............................................................................................................................................................................................................................................CAAAAAATAAGGC-------------------------------------------------------------AAACAAAAAAC..............................................................................................................................................................2411.001010000
.................................................................................................................................................................................................................................................................................................................................AACAAATCAAG--CAACAAT--CCACA......................................................................................................................................2311.001010000
....GACTACTACGCCGGCGGCTAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000
.....................................................................................................................................................................CTAAAA-----TT-AGCC----------------------------------AATAAAC..................................................................................................................................................................................................................................................................1911.001010000
.............................................................AAAC---AT---AATAATGCTCAAAGCAACT......................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
.............................ATGGATATGACTACGGTTATGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
..........................................................................................................................................................................................................................ATAAACAA--AAAA--CAAAACACC...............................................................................................................................................................................................................................................21200.051010000
droBip1
TGGCGACTACTATGCCGGCGGCTACTATAATGGATATGACTACGGTTATGGTAAATACAACAAAC---AT---AATAATGCTCAAAGCAACTATTACAATAACAATGCGTCG---AGTAATTACCATCAAAACAAGAACAATAG---CAACAACTATCAGCAGTTCTAAAT------T-AGCC----------------------------------AACACACAA--AAA----------------GAGGCAGA-----------------------------------------AATATA-A---------------AAAACAAATCAAA--CAACAATATCCACAGAACACCA----------------------------------------------------C----AACCTT-----------ATGA-A-CTTTGCCATAGACCAGAATCTGAAAT------CCA---A------SizeHit CountTotal NormTotal
No Reads
droKik1
TGGCGACTACTATACCGGCGGCTACTATAATGGATATGACTACGGTTATGGTAAATACAACAAACCACAT---AATAATGCTCAAAACAATTATTACAATAACAACACGTCG---AGTAATTACCATCCAAACAAGAACAATAG---CAACAACTATCAGCAGTTCTAAGTAG--TCT-AGCCGAAAAAAAACAAACAAAAACAG-CTG-----GCCAGCAA--AA-------------------------------------------------------------GAAAACAAAAACAACAACCTTAAATCAAG---CAAACAAAGCA-A--CAACAACACCTGCTGAATACCA----------------------------------------------------TAT-----TAT-----------TAAA-C-TTTTGCCATAGACCTGA-TCTGA--T------------TTGATCCSizeHit CountTotal NormTotal
No Reads
droFic1
TGGCGACTACTATGCCGGCGGCTACTATAATGGATATGACTACGGTTATGGTAAATACAACAAAC---AA---AATAGTGCTCAAAACAATTATTACAATAACAACACGTCG---AGTAATTACCATCAAAACAAGAACAATAG---CAACAACTATCAGCAGTTCTAAGTAGAGCCG-AGCCACAA--------------AGAGGCTG-----GCCAGTAA--AA----------------------AATCAGA-----------------------------------------AACAAT--------ATCAAG---CAAACAAAGC------AACAACAACCGCAGTACACCA----------------------------------------------------TATG-AACTTT-----------TTAA-T-TTTTGCCATAGACCCGA-TCTGA--T------------A------SizeHit CountTotal NormTotal
No Reads
droEle1
TGGCGACTACTATTCCGGCGGCTACTATAATGGATATGACTACGGTTATGGTAAATACAACAAACAACAA---AGTAGTGCTCAAAACAATTATTACAATAACAACACGTCG---AGTAATTACCATCAAAACAAGA---ATAG---CAACAACTATCAGCAGTTCTAAGTAGAGCCT-AGCCACAA--------------AAAGAATG-----GTCAGCAA--------------------------AATCAGA-----------------------------------------AAGAAA-A-----ATACAAG---CAAACAAAGC------AACAACAACCGCAGAACACCA----------------------------------------------------TATA-AACTTT-----------TTAA-T-TTTTGCCATAGACCCGA-TCTGA--T------------A------SizeHit CountTotal NormTotal
No Reads
droRho1
TGGCGACTACTATTCCGGCGGCTACTATAATGGATATGACTACGGTTATGGTAAATACAACAAACAACAA---AGTAGTGCTCAAAACAATTATTACAATAACAACACGTCG---AGTAATTACCATCAAAACAAGAACAATAG---CAACAACTATCAGCAGTTCTAAGTAGAGCCT-AGCCACAA--------------AAAGACTG-----GCCAGCAA--------------------------AATCAGA-----------------------------------------AAGAAAAA-----AATCAAA---CAAACAAAGC------AACAACAACCGCAAAACACCA----------------------------------------------------TATA-AACTTT-----------TTAA-T-TTTTGCCATAGACCCGA-TCTGA--T------------A------SizeHit CountTotal NormTotal
No Reads
droBia1
TGGCGACTACTATACCGGCGGCTACTATAATGGATATGACTACGGTTATGGTAAATACAACAAACAACAA---AGTAGTGCTCAGAACAATTATTACAATAACAACACGTCG---AGTAATTACCATCCAAACAAGAACAATAG---CAACAACTATCAGCAGTTCTAAGTAGAGCCT-AGCCGCAA--------------TCAG-CAG-----GCCAGCAA--AA----------------------AATCAGA-----------------------------------------AACAAA-A------AACAAG---CAAACAAAGC------AACAACAACCGCAAAACACCA----------------------------------------------------TATA-AACTCT-----------TTAA-T-TTTTGCCATAGACCTGA-TCTGA--T------------C------SizeHit CountTotal NormTotal
No Reads
droTak1
TGGCGACTACTATACCGGCGGCTACTATAATGGATATGACTACGGTTATGGTAAATACAACAAACAACAA---AGTAGTGCTCAAAACAATTATTACAATAACAACACGTCG---AGTAATTACCATCAAAACAAGAACAATAG---CAACAACTATCAGCAGTTCTAAGTAGAGCCT-AGCCGCAA--------------TCAG-CAG-----GCCAGCAA--AG----------------------AATCAGA-----------------------------------------AACAAA-A-----AATCAAG---CAAACAAAGC------AACAACAACCGCAGAACACCA----------------------------------------------------TATA-AACTCT-----------TAAT-T-TTTTGCCATAGACCTGA-TCTGA--T------------C------SizeHit CountTotal NormTotal
No Reads
droEug1
TGGCGACTACTATACCGGCGGCTACTATAATGGATATGACTACGGTTATGGTAAATACAACAAACAACAA---AGTAGTGCTCAAAACAATTATTACAATAACAACACGTCG---AGTAATTACCATCAAAACAAGAACAATAG---CAACAACTACCAGCAGTTCTAAGTAGAGCCT-AGCGGCAA--------------AAAG-CTG-----GCTAGCAA--AAAAAATATCCA-----------GAATCAGA-----------------------------------------AACAAA-------------A---CAAACAAAGCAAACCAAACAACAACTGCAGAACACCA------------------------------------------TACATATATATATA-AAATTC-----------TTAA-C-TTTTGCCATAGACCTGA-TATGA--A-----------------CCSizeHit CountTotal NormTotal
No Reads
dm3
TGGCGACTACTATGCCGGCGGCTACTATAATGGATATGACTACGGTTATGGTAAATACAACAAACAACAA---AGTAGTGCTCAAAACAATTATTACAATAACAACACGTCG---AGTAATTACCATCAAAACAAGAACAATAG---CAACAACTATCAGCAGTTCTAAGTAGAGCCTCAGCCGCAT--------------AGAG-CTGGCCTGGCCAGCAA-CAA----------------------AATCAGA-----------------------------------------AAGAAA-T-----AAT-------CAAACAAAGCAAA--CAACAACAACCGCAGAATA-------------------------------------------------------TAAA-AACCTT-----------CTAA-T-TTTTGCCATAGACCTGA-TCTGA--T-----------------CCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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...................................................................................................................................................................TTCTAAGTAGAGCCTCAGCCGCAT--------------AGAG-....................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TTTTGCCATAGACCTGA-TCTGA--A-----------------A.2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................TAGAGCCTCAGCCGCAT--------------AGAG-CTGGCCTGGC..........................................................................................................................................................................................................................................................................3111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-T-TTTTGCCATAGACCTGA-TCTGA--T-----------------CC2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................CAGCAGTTCTAAGTAGAGCCTCAGC............................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................AAACAAGAACAATAG---CAACAACTATC....................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................CAACAAACAACAA---AGTAGTGCTCAAAA...........................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................AATCAGA-----------------------------------------AAGAAA-T-----AAT-------CAAACAAAGCA........................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................ATAATGGATATGACTACGGTTATT................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................TACCATCAAAACAAGAACAA.....................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................CG---AGTAATTACCATCAAAAC.............................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................ACAA---AGTAGTGCTCAAAACAATTATT...................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TGGCGACTACTATGCCGGCGGCTACTATAATGGATATGACTACGGTTATGGTAAATACAACAAACAACAA---AGTAGTGCTCAAAACAATTATTACAATAACAACACGTCG---AGTAATTACCATCAAAACAAGAACAATAG---CAACAACTATCAGCAGTTCTAAGTAGAGCTC-AGCCGCAT--------------A-AG-CTG-----GCCAGCAA-CAA----------------------AATCAGA-----------------------------------------AAAAAAAT-----AAT-------CAAACAAAGCAAA--CAACAACAACCGCAGAACA-------------------------------------------------------TAAA-AACCTT-----------CTTA-T-TTTTGCCATAGACCTGA-TCTGA--T-----------------CCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................................................................................................................................................TATCAGCAGTTCTAAGTAGAGCTC-...............................................................................................................................................................................................................................................................................................................2418.00801000021103000000
...................................................................................................................................................................TTCTAAGTAGAGCTC-AGCCGCAT--------------A-AG-C...................................................................................................................................................................................................................................................................................2715.00500300020000000000
..................................................................................................................................................................GTTCTAAGTAGAGCTC-AGCC...........................................................................................................................................................................................................................................................................................................2015.00503200000000000000
.......................................................................................................................................................................AAGTAGAGCTC-AGCCGCAT--------------A-AG-CT..................................................................................................................................................................................................................................................................................2414.00401210000000000000
.......................................................................................................................................................AACTATCAGCAGTTCTAAGTAGAGCTC-...............................................................................................................................................................................................................................................................................................................2714.00402000000002000000
......................................................................................................................................................CAACTATCAGCAGTTCTAAGTAGAGC..................................................................................................................................................................................................................................................................................................................2613.00300000011010000000
......................TACTATAATGGATATGACTACGGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................2413.00300010000001010000
...................................................................................................................................................................TTCTAAGTAGAGCTC-AGCC...........................................................................................................................................................................................................................................................................................................1913.00311100000000000000
.............................................................AAACAACAA---AGTAGTGCTCAAAAC..........................................................................................................................................................................................................................................................................................................................................................................................................2412.00200010010000000000
..........TATGCCGGCGGCTACTATAATGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.00200000002000000000
.................................................................AACAA---AGTAGTGCTCAAAACAATT......................................................................................................................................................................................................................................................................................................................................................................................................2412.00201000001000000000
................................................................CAACAA---AGTAGTGCTCAAAAC..........................................................................................................................................................................................................................................................................................................................................................................................................2112.00200200000000000000
............................................................................................................................................................TCAGCAGTTCTAAGTAGAGCTC-AGC............................................................................................................................................................................................................................................................................................................2512.00200000010100000000
....................................................................................................................................................AACAACTATCAGCAGTTCTAAGTAGAGC..................................................................................................................................................................................................................................................................................................................2812.00200000020000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-T-TTTTGCCATAGACCTGA-TCTGA--....................2512.00200000000200000000
...........................................................................................................................................................ATCAGCAGTTCTAAGTAGAGCTC-...............................................................................................................................................................................................................................................................................................................2312.00202000000000000000
...........................................................................................................................................................ATCAGCAGTTCTAAGTAGA....................................................................................................................................................................................................................................................................................................................1911.00100010000000000000
......................TACTATAATGGATATGACTACGGTTAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010000000000000
......CTACTATGCCGGCGGCTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
.....................................................................................................................................................................CTAAGTAGAGCTC-AGCCGCAT--------------A-AG-C...................................................................................................................................................................................................................................................................................2511.00101000000000000000
.................................................................................................AATAACAACACGTCG---AGTA...........................................................................................................................................................................................................................................................................................................................................................................1911.00100010000000000000
......................................................................................ACAATTATTACAATAACAACACGTCG---A..............................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000000000
..................................................................................................................................................................................................................................................................................................................................................AACAACCGCAGAACA-------------------------------------------------------TAAA-AACC.................................................................2311.00100010000000000000
.....................................................................A---AGTAGTGCTCAAAACAATTATTA..................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000100000000
.GGCGACTACTATGCCGGCGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010000000000000
...................................................................................................................................................................TTCTAAGTAGAGCTC-AGCCGCAT--------------A-.......................................................................................................................................................................................................................................................................................2411.00100000001000000000
..................CGGCTACTATAATGGATATGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
........................................................................................................................................................................AGTAGAGCTC-AGCCGCAT--------------A-G......................................................................................................................................................................................................................................................................................2011.00100000010000000000
.....................................................................................................................................................................CTAAGTAGAGCTC-AGCCGCAT--------------A-GA-G...................................................................................................................................................................................................................................................................................2511.00100000000000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCCATAGACCTGA-TC.........................1811.00100001000000000000
...........................................................................................................................................................ATCAGCAGTTCTAAGTAGAGCTC-AGCC...........................................................................................................................................................................................................................................................................................................2711.00100100000000000000
...................................................................................................................................................................TTCTAAGTAGAGCTC-AGCCGCAT--------------A-G......................................................................................................................................................................................................................................................................................2511.00100000001000000000
....GACTACTATGCCGGCGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
..........................................................................................................................................................TATCAGCAGTTCTAAGTAGAGCTC-AGC............................................................................................................................................................................................................................................................................................................2711.00100100000000000000
......................................................................................................................AATTACCATCAAAACAAGAACAATAG---...............................................................................................................................................................................................................................................................................................................................................2611.00100010000000000000
.........................................................................AGTAGTGCTCAAAAC..........................................................................................................................................................................................................................................................................................................................................................................................................1511.00100000010000000000
.......................................................................................................................................................AACTATCAGCAGTTCTAAGTAGAGCT.................................................................................................................................................................................................................................................................................................................2611.00100000000001000000
.....................................................................A---AGTAGTGCTCAAAACAATTA.....................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGCCATAGACCTGA-TCT........................2011.00101000000000000000
...........................................................................................................................................................ATCAGCAGTTCTAAGTAGAGCTC-AGC............................................................................................................................................................................................................................................................................................................2611.00101000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCCATAGACCTGA-TCT........................1911.00100000000000100000
....................................................................................................................................................................TCTAAGTAGAGCTC-AGCCGC.........................................................................................................................................................................................................................................................................................................2011.00100010000000000000
........................................................................................................................................................................................................................................................................................................................................................CGCAGAACA-------------------------------------------------------TAAA-AACCT................................................................1811.00110000000000000000
................................................................................................................................................................................................................................................................................................................................................ACAACAACCGCAGAACA-------------------------------------------------------TAAA-AACC.................................................................2511.00100000010000000000
....................................................................................................................................................................TCTAAGTAGAGCTC-AGCCGCAT--------------A-AG-CT..................................................................................................................................................................................................................................................................................2711.00101000000000000000
...........................................................................................................CGTCG---AGTAATTACCATCAAAACAAGA.........................................................................................................................................................................................................................................................................................................................................................2711.00100000000001000000
.........................................................................................................................................................................GTAGAGCTC-AGCCGCAT--------------A-AG-CTG-----GCC.........................................................................................................................................................................................................................................................................2611.00100100000000000000
.................................................................AACAA---AGTAGTGCTCAAAACA.........................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000000000
.......................................................................................................................................................................AAGTAGAGCTC-AGCCGCAT--------------A-.......................................................................................................................................................................................................................................................................................2011.00100000010000000000
..............................................................AACAACAA---AGTAGTGCTCAAAACAATT......................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000000001000
....................................................................................................................................................................TCTAAGTAGAGCTC-AGCCGCAT--------------A-GA-G...................................................................................................................................................................................................................................................................................2611.00100000000000010000
............................................................................................................................CATCAAAACAAGAACAATAG---CAAC...........................................................................................................................................................................................................................................................................................................................................2411.00101000000000000000
.............................................................................................................................................................CAGCAGTTCTAAGTAGAGCTC-AGCC...........................................................................................................................................................................................................................................................................................................2511.00110000000000000000
...........................................................................................................................................................................AGAGCTC-AGCCGCAT--------------A-AG-....................................................................................................................................................................................................................................................................................1811.00100001000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCATAGACCTGA-TCTGA--T-----------------CC2211.00100100000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................TT-----------CTTA-T-TTTTGCCATAGACCTGA-TC.........................2611.00100000000010000000
..........................................................................................................................................................TATCAGCAGTTCTAAGTAGAGCTC-AG.............................................................................................................................................................................................................................................................................................................2611.00100000000100000000
............................AATGGATATGACTACGGTTATGGTAA............................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010000000000000
.....................................................................A---AGTAGTGCTCAAAA...........................................................................................................................................................................................................................................................................................................................................................................................................1511.00100000001000000000
.................................................................................................AATAACAACACGTCG---AGTAATTAC......................................................................................................................................................................................................................................................................................................................................................................2411.00100010000000000000
.............................................................................................TTACAATAACAACACGTCG---AGT............................................................................................................................................................................................................................................................................................................................................................................2211.00100010000000000000
...........................................................................................TATTACAATAACAACACGTCG---AGTA...........................................................................................................................................................................................................................................................................................................................................................................2511.00100000000100000000
.......................................................TACAACAAACAACAA---AGTAGT...................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
...................................................................CAA---AGTAGTGCTCAAAAC..........................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010000000000000
................................................................................................................................................................................................................................................................................................................................................................A-------------------------------------------------------TAAA-AACCTT-----------CTTA-T-TTTT.........................................2011.00100010000000000000
.......TACTATGCCGGCGGCTACTATAATGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000001000000000
..........................................................AACAAACAACAA---AGTAGTGCTCAAAACA.........................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000000000001000
................................................................CAACAA---AGTAGTGCTCAAAACAAT.......................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000000000
......................................................................................................................................................................TAAGTAGAGCTC-AGCCGCAT--------------A-AG-CTG-----G...........................................................................................................................................................................................................................................................................2711.00100000000001000000
.............................................................AAACAACAA---AGTAGTGCC................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
......................................................................................................................................................................TAAGTAGAGCTC-AGCCGCAT--------------A-AG-CT..................................................................................................................................................................................................................................................................................2511.00101000000000000000
..........................................................................................................................................................................TAGAGCTC-AGCCGCAT--------------A-AG-CTG-----GCCAG.......................................................................................................................................................................................................................................................................2711.00100000000001000000
....................................................................................................................................................................TCTAAGTAGAGCTC-AGCC...........................................................................................................................................................................................................................................................................................................1811.00110000000000000000
.............................................................AAACAACAA---AGTAGTGCTCAAAACAATT......................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000000000000000
..............................................................................................TACAATAACAACACGTCG---AGTAATTACC.....................................................................................................................................................................................................................................................................................................................................................................2811.00100000001000000000
.................................................................................................................................................................AGTTCTAAGTAGAGCTC-AGC............................................................................................................................................................................................................................................................................................................2011.00110000000000000000
.....ACTACTATGCCGGCGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1611.00100000000001000000
.................................................................................................................................................................AGTTCTAAGTAGAGCTC-AGCC...........................................................................................................................................................................................................................................................................................................2111.00110000000000000000
.........................................ACGGTTATGGTAAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................1511.00100000010000000000
.....................................................................................................................................................ACAACTATCAGCAGTTCTAAGTAGAGC..................................................................................................................................................................................................................................................................................................................2711.00100000001000000000
...........................TAATGGATATGACTACGGTTATGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000000000
..........................................................................................................ACGTCG---AGTAATTACCATCAA................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
.........................................................................................................................TACCATCAAAACAAGAACAATAG---CAAC...........................................................................................................................................................................................................................................................................................................................................2711.00100000000000100000
...............................................................ACAACAA---AGTAGTGCTCAAAACA.........................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000000000
...........................................................................................................................................................................AGAGCTC-AGCCGCAT--------------A-AG-CTG-----GCCAGCA.....................................................................................................................................................................................................................................................................2811.00100010000000000000
droSec2
TGGCGACTACTATGCCGGCGGCTACTATAATGGATATGACTACGGTTATGGTAAATACAACAAACAACAA---AGTAGTGCTCAAAACAATTATTACAATAACAACACGTCG---AGTAATTACCATCAAAACAAGAACAATAG---CAACAACTATCAGCAGTTCTAAGTAGAGCTC-AGCCGCAT--------------AGAG-CTG-----GTCAGCAA-CAA----------------------AATCAGA-----------------------------------------AAAAAA-T-----AAT-------CAAACAAAGCAAA--CAACAACAACCGCAGAACA-------------------------------------------------------TAAAAAAC--------------CTAA-T-TTTTGCCATAGACCTGA-TCTGA--T-----------------CCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................AATGGATATGACTACGGTTATGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................2413.0030030
.............................ATGGATATGACTACGGTTATGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020020
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCCATAGACCTGA-TCTGA--T-----------------..2111.0010010
......................................................................................................CAACACGTCG---AGTAATTACCATC..................................................................................................................................................................................................................................................................................................................................................................2311.0010100
....................................TGACTACGGTTATGGTAAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
..............................................................................................................................................................................GCTC-AGCCGCAT--------------AGAG-CTG-----GTC.........................................................................................................................................................................................................................................................................2211.0010010
......................................................................................................CAACACGTCG---AGTAATTAC......................................................................................................................................................................................................................................................................................................................................................................1911.0010010
............................AATGGATATGACTACGGTTAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
.................................................................................................................................................................................................................................................................................................................................AACAAAGCAAA--CAACAACAACCGCA......................................................................................................................................2511.0010010
.........................................................................................................................................................CTATCAGCAGTTCTAAGTAGAGCTC-...............................................................................................................................................................................................................................................................................................................2511.0010100
.......TACTATGCCGGCGGCTACTATA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TTTTGCCATAGACCTGA-TC.........................2011.0010010
................................................................CAACAA---AGTAGTGCTCAAAACAATT......................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
............................................................................................ATTACAATAACAACACGTCG---AGT............................................................................................................................................................................................................................................................................................................................................................................2311.0010010
.............................ATGGATATGACTACGGTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
..........................ATAATGGATATGACTACGGTTATGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010
.............................................................................................................................................................CAGCAGTTCTAAGTAGAGCTC-AGCCGC.........................................................................................................................................................................................................................................................................................................2711.0010010
.................................................................AACAA---AGTAGTGCTCAAAAC..........................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
...........................................................................................................................................................................AGAGCTC-AGCCGCAT--------------AGAG-CTG-----GTC.........................................................................................................................................................................................................................................................................2511.0010010
..............................................................................................................................................................................GCTC-AGCCGCAT--------------AGAG-CTG-----GT..........................................................................................................................................................................................................................................................................2111.0010010
...............................................................ACAACAA---AGTAGTGCTCAAAACAATT......................................................................................................................................................................................................................................................................................................................................................................................................2611.0010001
...........................................................................................................................................................................AGAGCTC-AGCCGCAT--------------AGAG-CTG-----GT..........................................................................................................................................................................................................................................................................2411.0010010
........................................................................................................................................................................AGTAGAGCTC-AGCCGCAT--------------AGA......................................................................................................................................................................................................................................................................................2111.0010010
................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-T-TTTTGCCATAGACCTGA-TCTGA--T-----------------C.2711.0010001
.................................................................AACAA---AGTAGTGCTCAAAA...........................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
.....................................................................................................................................................................CTAAGTAGAGCTC-AGCCGC.........................................................................................................................................................................................................................................................................................................1911.0010010
..............................................................................................................................................................................GCTC-AGCCGCAT--------------AGAG-CTG-----............................................................................................................................................................................................................................................................................1911.0010010
.....................................................AATACAACAAACAACAA---AGT......................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
.........................................................................................................................................................................GTAGAGCTC-AGCCGCAT--------------AGAG-CT..................................................................................................................................................................................................................................................................................2311.0010010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TTTTGCCATAGACCTGA-TCTG.......................2211.0010010
..................................................................ACAA---AGTAGTGCTCAAAACAATTATT...................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010
.....................................................................................................................................................................CTAAGTAGAGCTC-AGCCGCAT--------------.........................................................................................................................................................................................................................................................................................2111.0010010
..................................................................................................ATAACAACACGTCG---AGTAATTACC.....................................................................................................................................................................................................................................................................................................................................................................2411.0010010
...................................................................................................................................................................TTCTAAGTAGAGCTC-AGCCGCA........................................................................................................................................................................................................................................................................................................2211.0010010
..............................................................................................................................................AG---CAACAACTATCAGCAGTT.............................................................................................................................................................................................................................................................................................................................2011.0010010
......................................................................................................................................................................TAAGTAGAGCTC-AGCCGCAT--------------AGCT-....................................................................................................................................................................................................................................................................................2411.0010010
....................................................................................................................................................AACAACTATCAGCAGTTCTAAGTAGAGC..................................................................................................................................................................................................................................................................................................................2811.0010100
......................................................................................................................AATTACCATCAAAACAAGA.........................................................................................................................................................................................................................................................................................................................................................1911.0010010
........................................................................................................................................................................................................................CAGCAA-CAA----------------------AATCAGA-----------------------------------------AAA.......................................................................................................................................................................................1911.0010010
droYak3
TGGCGACTACTATGCCGGCGGCTACTATAATGGATATGACTACGGTTATGGTAAATACAACAAACAACAA---AGTAGTGCTCAAAGCAATTATTACAATAACAACACGTCG---AGTAATTACCATCAAAACAAGAACAATAG---CAACAACTATCAGCAGTTCTAAGTAGAGCTC-AGCCGCAT--------------AAAG-CTG-----ACCAGCAA--AA----------------------AATCAGA-----------------------------------------AAGAAA-T-----AATCAAG---CAAACAAAGCAAA--CAACAACAACCGCAGAACA-------------------------------------------------------TATA-ATCCTT-----------CTAA-T-TTTTGCCATAGACCTGA-TCTGA--T------------C------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................................................................................................................................................................TCTAAGTAGAGCTC-AGCCGCAT--------------AAAG-CT..................................................................................................................................................................................................................................................................................2812.00200000020000
....................................................................................................................................................................TCTAAGTAGAGCTC-AGCCGCAT--------------AAAG-....................................................................................................................................................................................................................................................................................2612.00200000020000
..............................................................................................................................................AG---CAACAACTATCAGCAGTTCTAAGT.......................................................................................................................................................................................................................................................................................................................2612.00202000000000
.........................................................................................................................................ACAATAG---CAACAACTATCAGCAGT..............................................................................................................................................................................................................................................................................................................................2412.00200000020000
...............................................................................................ACAATAACAACACGTCG---AGT............................................................................................................................................................................................................................................................................................................................................................................2012.00201000010000
............................AATGGATATGACTACGGTTATGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................2412.00200010010000
...........................................................................................................................................................ATCAGCAGTTCTAAGTAGAGCTC-...............................................................................................................................................................................................................................................................................................................2312.00200000020000
......................................................ATACAACAAACAACAA---AGTAGT...................................................................................................................................................................................................................................................................................................................................................................................................................2212.00200000020000
........................................................ACAACAAACAACAA---AGTAGT...................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200000020000
....................................................AAATACAACAAACAACAA---AGT......................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000
................................................................................................................................................................................................................G-----ACCAGCAA--AA----------------------AATCAGA-----------------------------------------AAGAAA-T-----.............................................................................................................................................................................2511.00100000010000
......................................................................................................................................................................TAAGTAGAGCTC-AGCCGCAT--------------A........................................................................................................................................................................................................................................................................................2111.00100000010000
..............................................................................................................................................................AGCAGTTCTAAGTAGAGCTC-...............................................................................................................................................................................................................................................................................................................2011.00101000000000
..........................................................................................................................ACCATCAAAACAAGAACAATAG---CAACAAC........................................................................................................................................................................................................................................................................................................................................2911.00101000000000
........................................................................................................................................................................AGTAGAGCTC-AGCCGCAT--------------AAAG-CT..................................................................................................................................................................................................................................................................................2411.00100000010000
.....................................GACTACGGTTATGGTAAATACAACAAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000000000
.....................................................................................................................................................................CTAAGTAGAGCTC-AGCCGCAT--------------.........................................................................................................................................................................................................................................................................................2111.00100000010000
........................................................................................AATTATTACAATAACAACACGT....................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
.....................................................................................................................................................................................................................................................................................................................................................AACCGCAGAACA-------------------------------------------------------TATA-ATCCT................................................................2111.00100100000000
.....................................GACTACGGTTATGGTAAATAC........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000
..............................................................AACAACAA---AGTAGTGCTCAAAGC..........................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
......................................................................................................................................................CAACTATCAGCAGTTCTAAGTAGAGCTC-...............................................................................................................................................................................................................................................................................................................2811.00100000010000
..........................................................................................................................................................................TAGAGCTC-AGCCGCAT--------------AAAG-CTG-----ACC.........................................................................................................................................................................................................................................................................2611.00100000010000
.........................................................................................................CACGTCG---AGTAATTACCATCAAAACAAGAA........................................................................................................................................................................................................................................................................................................................................................3011.00100000010000
..........................................................................................................................................................................................................................................................................................................GAAA-T-----AATCAAG---CAAACAAAGC.........................................................................................................................................................2211.00100100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................ATA-ATCCTT-----------CTAA-T-TTTTGCCATA...................................2411.00101000000000
.............................ATGGATATGACTACGGTTATGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
................................................................CAACAA---AGTAGTGCTCAAAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000
...........................................................................................................................................................................AGAGCTC-AGCCGCAT--------------AAAG-CT..................................................................................................................................................................................................................................................................................2111.00100000010000
...........................................................................................TATTACAATAACAACACGTCG---AGTAAT.........................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TTTTGCCATAGACCTGA-TCTGA--T------------.......2411.00110000000000
...............................................................................................................................CAAAACAAGAACAATAG---CA.............................................................................................................................................................................................................................................................................................................................................1911.00101000000000
.............................................................................GTGCTCAAAGCAATTATTACAAT..............................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
..................................................................ACAA---AGTAGTGCTCAAAGC..........................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000
....................................................................................................................................................................TCTAAGTAGAGCTC-AGCCGCAT--------------.........................................................................................................................................................................................................................................................................................2211.00100000010000
.......TACTATGCCGGCGGCTACTAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-T-TTTTGCCATAGACCTGA-TCTGA--....................2511.00100100000000
...............................GGATATGACTACGGTTATGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-T-TTTTGCCATAGACCTGA-TCTG.......................2411.00101000000000
.......................................................................................................................................................................AAGTAGAGCTC-AGCCGCAT--------------AAAG-CTG-----ACC.........................................................................................................................................................................................................................................................................2911.00100000010000
..................................................................................................ATAACAACACGTCG---AGTAATTAC......................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
.....................................................................A---AGTAGTGCTCAAAGCAATTA.....................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000
........................................................ACAACAAACAACAA---AGTAGTGCTCAAAGC..........................................................................................................................................................................................................................................................................................................................................................................................................2911.00100100000000
.....................................................................................................................................................................CTAAGTAGAGCTC-AGCCGCAT--------------AAAG-CT..................................................................................................................................................................................................................................................................................2711.00100000010000
...CGACTACTATGCCGGCGGCTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
........................................................ACAACAAACAACAA---AGTAGTGCT................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
......................................................................................................................................................................................................................................................................................................................................AGCAAA--CAACAACAACCGCAGAAC..................................................................................................................................2411.00101000000000
.......................................................................................................................................GAACAATAG---CAACAACTATCAGCAGT..............................................................................................................................................................................................................................................................................................................................2611.00100000010000
.....................................................................................AGCAATTATTACAATAACAACACGTCG---...............................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
.......................................................................................................................................................................AAGTAGAGCTC-AGCCGCAT--------------AAAG-CT..................................................................................................................................................................................................................................................................................2511.00101000000000
.....................................................................................................................................................................CTAAGTAGAGCTC-AGCCGC.........................................................................................................................................................................................................................................................................................................1911.00101000000000
...........................................................................................................................................................................................................................................................CAGA-----------------------------------------AAGAAA-T-----AATCAAG---CAAACAA............................................................................................................................................................2511.00100100000000
.................................................................................................................................................................................................................................................................................................................................................CAACAACCGCAGAACA-------------------------------------------------------TATA-ATC..................................................................2311.00101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TTTTGCCATAGACCTGA-TCTGA--T------------C------2511.00100000010000
.....................................................................................................................................................................CTAAGTAGAGCTC-AGCCGCAT--------------A........................................................................................................................................................................................................................................................................................2211.00100000010000
.........................................................................................................................................................................GTAGAGCTC-AGCCGCAT--------------AAAG-CT..................................................................................................................................................................................................................................................................................2311.00101000000000
........................................................................................AATTATTACAATAACAACACGTC...................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................A-T-TTTTGCCATAGACCTGA-T..........................2011.00100010000000
.....................................................................................................................................................................................................................................................................................................................................AAGCAAA--CAACAACAACCGCA......................................................................................................................................2111.00100010000000
.......................................................................................................................................................AACTATCAGCAGTTCTAAGTAGAGCT.................................................................................................................................................................................................................................................................................................................2611.00100000010000
......................................................................................................................................................................................................................ACCAGCAA--AA----------------------AATCAGA-----------------------------------------AAGAAA-T-----.............................................................................................................................................................................2411.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................CTAA-T-TTTTGCCATAGACCTGA-TCTG.......................2611.00100010000000
.......................................................................................................................................................................AAGTAGAGCTC-AGCCGCAT--------------AAA......................................................................................................................................................................................................................................................................................2211.00100000010000
............................AATGGATATGACTACGGTTAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
..............................................................................................TACAATAACAACACGTCG---AGT............................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
..............................................................................................................................................................................GCTC-AGCCGCAT--------------AAAG-CT..................................................................................................................................................................................................................................................................................1811.00100000100000
..............................................................................................................................................AG---CAACAACTATCAGCAGTT.............................................................................................................................................................................................................................................................................................................................2011.00100010000000
...........................................................................................................................................................................................................................................................................................................................................A--CAACAACAACCGCAGAACA-------------------------------------------------------TAT.......................................................................2311.00101000000000
..................................................................................................................................AACAAGAACAATAG---CAACAACT.......................................................................................................................................................................................................................................................................................................................................2211.00101000000000
...............................................................................................................................................................................................................TG-----ACCAGCAA--AA----------------------AATCAGA-----------------------------------------AAGAAA-T-----.............................................................................................................................................................................2611.00100000010000
...........................................................................................................................................AATAG---CAACAACTATCAGCAGTTCC...........................................................................................................................................................................................................................................................................................................................2511.00100100000000
.........................................................................................ATTATTACAATAACAACACGT....................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
.....................................................................................................................................................................CTAAGTAGAGCTC-AGCCGCAT--------------AAAG-C...................................................................................................................................................................................................................................................................................2611.00101000000000
........................................................................................AATTATTACAATAACAACACGTCG---AGT............................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
......................................................................................................................................................................TAAGTAGAGCTC-AGCCGCAT--------------AAAG-CT..................................................................................................................................................................................................................................................................................2611.00100100000000
..................................................................ACAA---AGTAGTGCTCAAAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010000000
droEre2
TGGCGACTACTATGCCGGCGGCTACTATAATGGATATGACTACGGTTATGGTAAATACAACAAACAACAA---AGTAGTGCTCAAAGCAATTATTACAATAACAACACGTCG---AGTAATTACCATCAAAACAAGAACAATAG---CAACAACTATCAGCAGTTCTAAGTAGCGCTC-AGCCGTAT--------------AAAT-CTG-----G-CAGCAA--AAAA--------------------AATCAGA-----------------------------------------AAGAAA-T-----AATCAAG---CAAACAAAGCAAG--CAACAACAACCGCAGAACA-------------------------------------------------------TATA-AACCTT-----------CTAA-T-TTTTGCCATAGACCTGA-TCTGA--T------------C------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
........................................................................................................................................................................AGTAGCGCTC-AGCCGTAT--------------AAAT-CTG-----G-CAGC......................................................................................................................................................................................................................................................................3018.0080000008
............................AATGGATATGACTACGGTTATGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................2414.0040000220
............................................................................................ATTACAATAACAACACGTCG---AGT............................................................................................................................................................................................................................................................................................................................................................................2314.0040100300
.....................................................................................................................................................................CTAAGTAGCGCTC-AGCCGTAT--------------.........................................................................................................................................................................................................................................................................................2112.0020001010
.................................................................AACAA---AGTAGTGCTCAAAGC..........................................................................................................................................................................................................................................................................................................................................................................................................2012.0020001100
...................................................................................................................................................................TTCTAAGTAGCGCTC-AGCCGT.........................................................................................................................................................................................................................................................................................................2112.0020001010
...............................................................................................ACAATAACAACACGTCG---AGT............................................................................................................................................................................................................................................................................................................................................................................2012.0020100100
.....................................................................................................................................................................................................................................................................................................................AATCAAG---CAAACAAAGCAAG--C...................................................................................................................................................2111.0010000010
...........................................................................................TATTACAATAACAACACGTCG---AGT............................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................A-T-TTTTGCCATAGACCTGA-TCTGA--T------------.......2511.0011000000
......CTACTATGCCGGCGGCTACTAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
..............................................................................................TACAATAACAACACGTCG---AGTAAT.........................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
................................................................................................CAATAACAACACGTCG---AGT............................................................................................................................................................................................................................................................................................................................................................................1911.0010001000
............................................................................................................................................................................................................................AA--AAAA--------------------AATCAGA-----------------------------------------AAGAAA-T-----.............................................................................................................................................................................2011.0010000100
....................................................AAATACAACAAACAACAA---AGT......................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001000
.......................................................................................................................................................AACTATCAGCAGTTCTAAGTAGC....................................................................................................................................................................................................................................................................................................................2311.0010000010
...........................................................................................................................................................ATCAGCAGTTCTAAGTAGC....................................................................................................................................................................................................................................................................................................................1911.0010000010
....................................................................................................................................................................TCTAAGTAGCGCTC-AGCCGTAT--------------AA.......................................................................................................................................................................................................................................................................................2411.0010000100
............................................................CAAACAACAA---AGTAGTGCTCAAAGC..........................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
.............................................................................................................................................................................................................................A--AAAA--------------------AATCAGA-----------------------------------------AAGAAA-T-----.............................................................................................................................................................................1911.0010000010
........ACTATGCCGGCGGCTACTATAATGGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000
.........................................................................................................................................................................................AT--------------AAAT-CTG-----G-CAGCAA--AAAA--------------------AATC......................................................................................................................................................................................................................................2411.0010000010
....................................................................................................................................................................................................................................................................................................................................AAAGCAAG--CAACAACAACCGCAGAAC..................................................................................................................................2611.0010100000
........................................................................................................ACACGTCG---AGTAATTACCATCAA................................................................................................................................................................................................................................................................................................................................................................2311.0010100000
...............................................................ACAACAA---AGTAGTGCTCAAAGCAA........................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
...............................................................................................................................................................................................................................................................................................................................................AACAACAACCGCAGAACA-------------------------------------------------------TAT.......................................................................2111.0010001000
..............................................................................................................................................AG---CAACAACTATCAGCAGTT.............................................................................................................................................................................................................................................................................................................................2011.0010000100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGCCATAGACCTGA-TCT........................2011.0010000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................AACCTT-----------CTAA-T-TTTTGCCATA...................................2111.0010100000
...........................TAATGGATATGACTACGGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001000
....GACTACTATGCCGGCGGCTACTAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010000
......................................................................................................................................................................................CGTAT--------------AAAT-CTG-----G-CAGCAA--A.................................................................................................................................................................................................................................................................2011.0010000010
..............................................................AACAACAA---AGTAGTGCTCAAAGC..........................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000000
....................................................................................................AACAACACGTCG---AGTAATTACCATC..................................................................................................................................................................................................................................................................................................................................................................2511.0010000100
.................................................................................................................................................................................................................................................................................................................................................................................................................................TT-----------CTAA-T-TTTTGCCATAGACCTGA-...........................2411.0011000000
...............................GGATATGACTACGGTTATGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
..........................................................................................TTATTACAATAACAACACGT....................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
.........................................................................................................................................................................................AT--------------AAAT-CTG-----G-CAGCAA--AAAA--------------------..........................................................................................................................................................................................................................................2011.0010000100
...........................................................................................................................................................ATCAGCAGTTCTAAGTAGCGCTC-AGC............................................................................................................................................................................................................................................................................................................2611.0010000100
......................................................................................................................................................................................................................................................................................................................................................ACCGCAGAACA-------------------------------------------------------TATA-AACCTT-----------CTA.................................................2411.0010100000
................................................................................................................................................................................................................................................................................................................................AAACAAAGCAAG--CAACAACAACC.........................................................................................................................................2311.0010100000
......................................................................................................................................................................TAAGTAGCGCTC-AGCCGTAT--------------A........................................................................................................................................................................................................................................................................................2111.0011000000
...........................................................................................................................................................ATCAGCAGTTCTAAGTAGCGCTC-AGCC...........................................................................................................................................................................................................................................................................................................2711.0010100000
.........................TATAATGGATATGACTACGGTTATGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................A-T-TTTTGCCATAGACCTGA-TCTG.......................2311.0010000100
.............................ATGGATATGACTACGGTTATGGTAA............................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000010
.....................................................................................................................TAATTACCATCAAAACAAGAACAATAG---C..............................................................................................................................................................................................................................................................................................................................................2811.0011000000
...........................TAATGGATATGACTACGGTTATGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000010
...............................................ATGGTAAATACAACAAACAACAA---AGT......................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000010
.......................................................TACAACAAACAACAA---AGTA.....................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000000
...................................................................................................................................................................................................................................................................................................................................................ACAACCGCAGAACA-------------------------------------------------------TATA-AACCT................................................................2311.0011000000
.......................................................................................................................ATTACCATCAAAACAAGAACAATA...................................................................................................................................................................................................................................................................................................................................................2411.0010100000
...................................................................................................................................................................................................................................................................................................................................CAAAGCAAG--CAACAACAACCGCAGAAC..................................................................................................................................2711.0010100000
....................................................AAATACAACAAACAACAA---AGTAGT...................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
...........................................................................................................................................................................................................................................................................................................................................................................................................................A-AACCTT-----------CTAA-T-TTTTGCCA.....................................2011.0011000000
........................................................................................................ACACGTCG---AGTAATTACCATCAAAACA............................................................................................................................................................................................................................................................................................................................................................2711.0011000000
.....................................................................................................................................................................CTAAGTAGCGCTC-AGCCGTAT--------------AAAT-CTG-----............................................................................................................................................................................................................................................................................2811.0010010000
.....................................................................................................................................................................CTAAGTAGCGCTC-AGCCGT.........................................................................................................................................................................................................................................................................................................1911.0010100000
....GACTACTATGCCGGCGGCTACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000
.........................................................................................................................................ACAATAG---CAACAACTATCAGCAGTT.............................................................................................................................................................................................................................................................................................................................2511.0010000100
.........................................................................................................................................................................................................................................................ATCAGA-----------------------------------------AAGAAA-T-----AATCAAG---CA.................................................................................................................................................................2211.0010000010
...............................................................................................................................................................GCAGTTCTAAGTAGCGCTC-AGCC...........................................................................................................................................................................................................................................................................................................2311.0010100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCCATAGACCTGA-TCTG.......................2011.0010001000
................................GATATGACTACGGTTATGGTAA............................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000

Generated: 05/17/2015 at 10:47 PM