ID:

dps_593

Coordinate:

2:16901124-16901274 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-18.7

Flybase annnotation

CDS [Dpse\GA14206-cds]; exon [Dpse\GA14206:1]; intron [Dpse\GA14206-in]

Repeatable elements

NameClassFamilyStrand
(CTG)nSimple_repeatSimple_repeat+

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AGCCGTACCTTGCTAACCGAAGCTAATACTTTTTCCGTTGCAGCATTACTACAACCACAACACACCAACCCACTTCTGAGTAAACGCATATATACGCACCTGTATATATGGATATACATTTGAAAGGGGACTGCACGGAGGCAGATCCCCACTCTTATTGCATTAGACGAACTGGCAGACTGGCAGCAGCAGCAGAAGCAGCAGTAGCGGCAGCAGCAGCTACAACCAACAAGCTACATCCTTACACACAT
**************************************************************************************************************************...(((((((((......)))).))))).....................(((.((...)).)))...**************************************************************
Read size # Mismatch Hit Count Total Norm Total M040
female body
SRR902010
ovaries
SRR902011
testis
SRR902012
CNS imaginal disc
GSM343916
embryo
M059
embryo
M062
head
V112
male body
M022
male body
..........................................................................................................................AAAGGGGACTGCACGGAGGC............................................................................................................. 20 0 1 4.00 4 0 0 0 4 0 0 0 0 0
...................................................................................................................................................................TAGACGAACTGGCAGACTGGCAGCAG.............................................................. 26 0 1 4.00 4 0 3 1 0 0 0 0 0 0
...........................................................................................................................................................TATTGCATTAGACGAACTGGCAGAC....................................................................... 25 0 1 3.00 3 0 3 0 0 0 0 0 0 0
..............................................................................................................................................................TGCATTAGACGAACTGGCAGACTGGC................................................................... 26 0 1 3.00 3 0 0 2 0 1 0 0 0 0
........................................................................................................................................................................GAACTGGCAGACTGGCAGC................................................................ 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0
..................................................................................................................TACATTTGAAAGGGGACTGCACG.................................................................................................................. 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0
...........................................................................................................................................................................CTGGCAGACTGGCAGCAGC............................................................. 19 0 1 2.00 2 0 0 0 0 2 0 0 0 0
..............................................................................................................................................................TGCATTAGACGAACTGGCAGACTGGCA.................................................................. 27 0 1 2.00 2 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GCAGCTACAACCAACAAGCTACATCCTTA....... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................................................................TGAAAGGGGACTGCACGGAGGC............................................................................................................. 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.............................................................................................................GGATATACATTTGAAAGGGGACTGC..................................................................................................................... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0
.........................................................................................................ATATGGATATACATTTGAAAGGGGAC........................................................................................................................ 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................AGCAGCAGAAGCAGCAGTAGCGGCA....................................... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................TAGACGAACTGGCAGACTGGCAGGC............................................................... 25 2 1 1.00 1 0 0 1 0 0 0 0 0 0
.................................................................................AAACGCATATATACGCACCTGTATAT................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................ACAACCACAACACACCAACCCACTTC............................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0
....................................................................................................................CATTTGAAAGGGGACTGCACGGA................................................................................................................ 23 0 1 1.00 1 0 0 0 0 0 0 0 1 0
........................................................................................................................................................TCTTATTGCATTAGACGAACTGGC........................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................TTATGCATTACTACAACCACAACACACC......................................................................................................................................................................................... 28 3 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................TACAACCACAACACACCAACCCACTTC............................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................TAGACGAACTGGCAGACTGGCAGGA............................................................... 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................TAGACGAACTGGCAGACTGCAG.................................................................. 22 3 2 1.00 2 0 0 2 0 0 0 0 0 0
.....................................................................................................................ATTTGAAAGGGGACTGCACGGA................................................................................................................ 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0
......................................................................................................................................................................ACGAACTGGCAGACTGGCAGCAG.............................................................. 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................CAGTAGCGCCAGCAGCAGCTACAACC........................ 26 1 1 1.00 1 0 0 0 0 0 0 1 0 0
.....................................................................................................................................................................GACGAACTGGCAGACTGGCAG................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1
........................................................................................................TATATGGATATACATTTGAAAGGGGAC........................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................CAGCAGCAGCTACAACCAAC..................... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0
...............................................ACTACAACCACAACACACCAACCCACTTC............................................................................................................................................................................... 29 0 1 1.00 1 0 0 0 0 0 0 1 0 0
...............................................................................................................................................................GCATTAGACGAACTGGCAGACTGG.................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................................................................CCACTTCTGAGTAAACGCATAT................................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................................................TACATGGATATACATTTGAAAGGGGAC........................................................................................................................ 27 1 1 1.00 1 0 0 0 0 0 1 0 0 0
.....................................................................................................................................................CACTCTTATTGCATTAGACGAACTGGCA.......................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................ACAACCAACAAGCTACATCCTTACAC.... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................GCACGGAGGCAGATCCCCAC................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0
........................................................................................................................................................................GAACTGGCAGACTGGCAGCAGCAGCA......................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................ATTAGACGAACTGGCAGACT...................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................TTGAAAGGGGACTGCACGGAGGC............................................................................................................. 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................TAGACGAACTGGCAGACTGGCAGGAG.............................................................. 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................TTAGACGAACTGGCAGACTGGCAGG................................................................ 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0
................................................................................................................................................................CATTAGACGAACTGGCAGACTGGCA.................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................ACGAACTGGCAGACTGGCAGCA............................................................... 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0
.........................................................CAACACACCAACCCACTTCTGAGC.......................................................................................................................................................................... 24 1 1 1.00 1 0 0 0 0 0 1 0 0 0
...........................................................................................................ATGGATATACATTTGAAAGGGGACT....................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0
...........................................................................................................ATGGATATACATTTGAAAGGGGACTG...................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................ATTAGACGAACTGGCAGACTGGC................................................................... 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0
...........................................................................................................................AAGGGGACTGCACGGAGGC............................................................................................................. 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0
......................................................CCACAACACACCAACCCACTTCTGAGT.......................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................CAGCAGTAGCGGCAGCAGCAGCT.............................. 23 0 1 1.00 1 0 0 0 0 0 0 0 1 0
........................................................................................................................................................................................................GCAGTAGCGGCAGCAGCAGCT.............................. 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0
...........................................................................................................ATGGATATACATTTGAAAGGGG.......................................................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0
...................................................................................................................................TGCACGGAGGCAGATCCCCACTC................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................CAACCAACAAGCTACATCCTTACAC.... 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0
...............................................................................................................................................................................................GCAGAAGCAGCAGTAGCGG......................................... 19 0 2 0.50 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................GCAGCAGAAGCAGCAGTAGC........................................... 20 0 3 0.33 1 0 0 0 0 1 0 0 0 0
....................................................AACGACAATACTCCAACCCAC.................................................................................................................................................................................. 21 3 6 0.17 1 0 0 0 0 0 1 0 0 0
..........................................................................................................................................................TTATTGCATTAGAGGGAC............................................................................... 18 2 9 0.11 1 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

TCGGCATGGAACGATTGGCTTCGATTATGAAAAAGGCAACGTCGTAATGATGTTGGTGTTGTGTGGTTGGGTGAAGACTCATTTGCGTATATATGCGTGGACATATATACCTATATGTAAACTTTCCCCTGACGTGCCTCCGTCTAGGGGTGAGAATAACGTAATCTGCTTGACCGTCTGACCGTCGTCGTCGTCTTCGTCGTCATCGCCGTCGTCGTCGATGTTGGTTGTTCGATGTAGGAATGTGTGTA
**************************************************************...(((((((((......)))).))))).....................(((.((...)).)))...**************************************************************************************************************************
Read size # Mismatch Hit Count Total Norm Total M040
female body
V112
male body
GSM444067
head
GSM343916
embryo
...............................................................AGGTTGGGTGTAGACTCA.......................................................................................................................................................................... 18 2 3 0.67 2 2 0 0 0
..................................................................................TTGCGTGTATGTGCGTGGAC..................................................................................................................................................... 20 2 2 0.50 1 0 1 0 0
.......GGAAAGATTGGGATCGATTA................................................................................................................................................................................................................................ 20 3 3 0.33 1 1 0 0 0
.........................................................GTTATGAGGTTGGGTGAA................................................................................................................................................................................ 18 2 4 0.25 1 1 0 0 0
................................................................................................................................................................................................................................TGGGTATTCGATGTAGGAA........ 19 2 5 0.20 1 0 0 0 1
........................................................................................................................................................................CTTGACCGTCTGGCCGTA................................................................. 18 2 5 0.20 1 1 0 0 0
...........................................GTAAGGATATTGGTGTTGT............................................................................................................................................................................................. 19 2 6 0.17 1 0 0 1 0
....................................................TTGGTATTGTGGGGTTGG..................................................................................................................................................................................... 18 2 7 0.14 1 1 0 0 0
..................................................................TGGGATGAAGACTCATTGG...................................................................................................................................................................... 19 3 8 0.13 1 0 1 0 0
...................................................GTGGGTGTGGTGTGGTTGGGTG.................................................................................................................................................................................. 22 2 9 0.11 1 0 1 0 0
..............................................................TAGGTTGGGTGTAGACTCA.......................................................................................................................................................................... 19 3 20 0.10 2 2 0 0 0
.....................................................................................................................................................................................................CGTCGTCATAGCCGTCGTC................................... 19 1 20 0.10 2 0 0 2 0
..............................................................AAGGTTGGGTGTAGACTCA.......................................................................................................................................................................... 19 3 15 0.07 1 1 0 0 0
..........................................................................................................................................................................................................................CAATGGTGGTTGTTCGATT.............. 19 3 15 0.07 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 2:16901074-16901324 - dps_593 AGCCGTAC-----C------------------------T--------TGC-TAACCGA-AGCTAATACTTTTTCCGTTGCAGCAT--TACTACAAC-CACAACACACCAA--CCCA--------------------------------------CTTCT---GA----GTAAACGCATATATA----CGCACCTGTATATATGGA--TATA----CA-----------------------------TTT-GAA-AGGGGACTGCACGGA---GGCAG----ATC-CCCACTCTTATTGCATT-------AGACGAACTG---GC-------------------------------------AGACT---------GGCAGCAGCAGCAGAAGCAGCAGTAGCGGCAGCAGCAGCTACAACCAACAAGCTACATCCTTA----------CACACAT
droPer2 scaffold_0:3489871-3490110 + TGCCGTAC-----CC--CCGGCGA-GGCAC--------T--------TGC-TAACCGA-AGCTAATTCTTTTTCCGTTGCAGCAT--TACTACAAC-CACAACACACCAA--CCCA--------------------------------------CTTCT---GA----GTAAACGCATATATA----CGCACCTGTATATATGGA--TATA----CA-----------------------------TTT-GAA-AAGGGACTGCACGGA---GGCAG----ATC-CCTATTCTTATTGCATT-------AGACGAACTG---GC-------------------------------------AGACT---------GGCAGCAG---------CAGCAG------CTACAAC---------CAACAAGCTACATCCTTA----------CACACAT
droWil2 scf2_1100000004943:6543905-6544198 - AATTTTCC-----CC--ATG----TAAATGAGAAAAAATTAATAATCAAT-----TAA-TTTCC----AAAATTAATTTCAGCATCTAACTACAA--TACAACACAC--C--TCTAAATACATATATCCAAA---AA-GAAAAGAAAA------GAACAGAATA----AACAACACAAATATA----TATAATTATATATATATA--TATA----TA-CA------------TA-AA-----T--ATATAGTA-AAGCGACTGCAGACAAACGGTAAA-CCACCTCTCATTCTCATGGCAT-------------ATTTA---GC-------------------------------------AAGGCGTCAATACTGGCATT---------GGGAACAGTTGATGAAAGGAGAATT---------------AAATCTTA----------CACACAT
droVir3 scaffold_13049:11679983-11680205 + AACCACAC-----AC--ACA--------------------------------------------------------------------------------------C--A--CACA--------------------------------------CACAC---AC----ACACACACACATGCACATACCCAGACACACGCACACA--CATGCAA-CTGC-CA-------GGCGAG-ACAGCAA--C-------------------------------------------------------T-------GGAGAGTCAG---GGCGTTACATAAGAATCCTTTTAATTCAAGTTGACATTTCGCAC---------AGCAGCAGCAGCAGCAGCAGCAGCAGCGGCAGCGGCGGCTGCAGCTCACC--AAGAAATTCAAGAAATTTTCAAATTTTT
droMoj3 scaffold_6473:7741176-7741402 - dmo_698 ACCACAAC-----CA--CAA----CAACAACAACAACAGCAGCAGCAAGT-----TGG-CGTGC----CAGGGTAAAC---------------------CGATGTAC--A--TAT---------------------------------------------------------------GTATG----TATGGCAGAGTACATATG--TATG----TA-CA------------TA-CG-----GTCCTGT---GAATGTGACACC---T--------------AC-GCAACGCGAAGCGCATTAAAGTGCGAACAC------------------------------------------------AGC---------AGCAGCAGCAGCAGCAGCAGCAGCAGCGGCAGCAGCAGCAGCCGCCAACA--CAGCAGCCCAA----------CTCCAAT
droGri2 scaffold_14906:4010405-4010578 + CAG-------------------------------------------------------------------------------CA---TACTACAG--AACAACACAT--A--CACAC----ACACACAC----------------------AAACATAT---AC----ACAAC-ACACACATA----C----------ACATACA--GAAG-------------------------------C--ATCT-ATA-AAGCGACTGCAG------GGCAG----ACCTCATATTTTCATGGCATA-------ATGCAGTCTA---GC-------------------------------------GGAGC---------A--GACAA---------CAAGAA------CAACAACAACCAT------AT---------TACA----------CACATTT
droAna3 scaffold_13340:2010351-2010597 - TCCT-------------GT------AGAGC----C---T--------TATTTATTTAT-AAA------ATTTTTCATTGCAGCAT--TACTACAAA-ATCGACATAT--A--CACAT----ACGGACACAAA---AA-GGCACATGGA------CAATTGAGGA----GTAACCGCATATATA----CAAAACTGTATATAGAAA--AACC----AA-AA------------CA-AACGGA-------TGG--------------------------GAGAAGC-GTCAGGATGATTGCATT-------AAATAGATTGTCTGC-------------------------------------TGGCT---------GGGAGCAA---------CTATTT------AAACCGCAGCTAC---CTTTA--C-GCATTTTTA----------CACACAT
droBip1 scf7180000396712:2321252-2321512 + AAGCACAG-----CCCCCTG-CG--GAGGA--------C--------AATGTATTCAT-AAA------TTTTGTCATTGCAGCAT--TACTACAAA-ATCGACATAA--A--CACAT----ACGGACAC--A---AAGGGCACATGGA------CAACGGAGGAGAGTATAACCGCATATATA----CAAAACTGTATATAGGAA--CAA---CCAA-AA------------CAA-ACGGA-------TGG--------------------------GACTAGC-GTCGGGATGATTGCATT-------AAATAGATTGTCTGC-------------------------------------TGGCT---------GGGAGCAA---------CTATTT------AAACCGCAGCTAC---CTTTA--C-GCATTTTTA----------AACACAC
droKik1 scf7180000302392:339999-340231 + TCCTCTGC-----AT--AAA----CAA-----------TTAAAA------A-AATGAATAATTTC-----TCTCATTTTTAGCAT--TACTACAAA-TACAACACAC--A--CACAC----------------------------------ATCCATCT---GA----GTAAACGCATATATA----CTAGTTTGTATATATCTG--AAAAAAA-AATA-TT-------ATATAAAACGGTAA--A---------------------GA---GGG---------A------CTCATTGCATT-------GAATAGACTG---GC-------------------------------------TGGCT---------GGGATTAA---------CATTAT------CAACAGCAGCTAC---CTTTA--CAACACCTCTAC--------ACACACTT
droFic1 scf7180000453906:34321-34535 + TCCC-------------CC------ACTGC--------C--------AGT-TAATTAA-TAATAC---C-TTTTTTTTGCAGCAT--AACTATGAA-AACAACACAC--C--TCCGC--------A-------------------------CACCAACT---GA----GAAGCCGCATATATA----TGCAATTGTATATATATAAATA-GAGA-GAAA-AGAAAAGAAAGGAAA-AAGGAAA--A-------------------------------------------------------T-------GAATAGACTG---GC-------------------------------------TGGCT---------GGGAGCAA---------AAATAT------CAACATCAGCTAC---CTTTA--C-ACACCTTTA----------CACACTT
droEle1 scf7180000491047:1735205-1735412 + CATTATTT-----CCCTCT------TGTCG--------T--------AGT-TAATTAA-AGTAAC------TTTCGTTGCAGCAT--AACTACAAA-TACAACACAC--CTCACTCA-----C--A-----CTTAC--------------AAACCATCT---GA----ATAACCGCATATATA----CGCAGTTGTATATATATA--GA-----------------------AGA-GAAGGAA--A-------------------------------------------------------T-------GAATAGACTG---GC-------------------------------------TGGCT---------GCGAGAAA---------TAATAT------CAACATCAGCTAC---CTTTA--C-AAACCTTTA----------CACACTT
droRho1 scf7180000761415:3886-4091 - TTTCTATC-----C--TCT------AGTGC--------T--------AGT-TAATTAA-AATTAC------TTTCGTTGCAGCAT--AACTACAAA-TACAACACAC--C--CTCAC--------A--C--A---A--------------AAACCATCT---TA----GTAACCGCATATATA----CACAGTTGTATATATATA--GATAAAA-GA-----------------A-AAGGAAA--A-------------------------------------------------------G-------GAATAGACTG---GC-------------------------------------TGGCT---------GGGAGCAA---------TAATAT------CAACATCAGCTAC---CTTTA--C-ACACCTTTA----------CACACTT
droBia1 scf7180000302402:2192203-2192421 - AACCTTTT-----TCCTCC------AATGGCAGCTTTAAGAACT---------------ATTTGT------TTCCATTGCAGCAT--TACTACAAA-AACAACACAC--A--TCTAA--------A--A------AA---------GAGAACACCATCT---GA----GTAACCGCATATATA----CGCAATTGTATATACATT--TAGAGAA-GA-------------AGGAA-AAGGAAA--A-------------------------------------------------------T-------GAATAGACTG---GC-------------------------------------TGGCT---------GGGAGCAA---------TAATAT------CAACATCAGCTAC---CTTTA--C-ACACCTTTA----------CACACTT
droTak1 scf7180000415380:261391-261603 - CCCC-------------TT------AAAGC--------C--------AGT-TAATAAA-AGTTGA------TTATATTGCAGCAT--TACTACAAA-AACAACACAC--C--TCTAA--------A--A--A------GAAAA-AAAAGAAAACCATTT---GA----GTAACCGCATATATA----CGCAGTTGTATATATAT---TATAGAA-GAAA-------------GAA-AAGGAAA--A-------------------------------------------------------T-------GAATAGACTG---GC-------------------------------------TGGCT---------GGGAGCAA---------TAATAT------CAACATCAGCTAC---CTTTA--C-TCACCTTTA----------CACACTT
droEug1 scf7180000409802:513956-514176 + AGCATTTCTCTTTCTCTCT------AATGC--------C--------AGT-TAAATAA-AGTTAA------TTCCATTGCAGCAT--TACTACAAA-AACAACACAC--C--TCTAC--------A--A--A---AA-GAAAAGAAAA------GA-AA---AG----AAAACCCCATATATA----CGCAGTTGTATATATACA--GAA---A-GAAA------------AAAA-AAGAAAC--A-------------------------------------------------------T-------GTATAGACTG---GC-------------------------------------TGGCT---------GGGAGCAA---------TAATAT------CAACATCAGCTAC---CTTAA--C-ACACCTTTA----------CACACTT
dm3 chr3R:9461850-9462066 - CT---------------TT------GTTGC--------C--------AGT-TCATTAA-AGTTGA---TTATATCATTGCAGCAT--TACTACAAGAAGCAACACAC--ATCTCTGC--------A--A--C---A--------------ACACCATCT---GG----GTAACCGCATATATACATACGCCGTTGTATATATCTG--TATGAAA-GAAA-TG-------AGGAAA-AAAGGAA--A-------------------------------------------------------T-------GAATAGACTG---GC-------------------------------------TGGCT---------GGGAGCAA---------TAATAT------CAACATCAGCAAC---CTTAA--C-ACACCTTTA----------CACACTT
droSim2 3r:11717308-11717524 + CT---------------TT------GTTGC--------C--------AGT-TAATTAA-AGTTGA---TTATTTCATTGCAGCAT--TACTACAAGAAGCAACACAC--ATCTCTGC--------A--A--C---A--------------ACACCACAT---GG----GTAACCACATATATACATACGCCGTTGTATATATCTG--TATGAAA-GAAA-TG-------AGGAAA-AATGGAA--A-------------------------------------------------------T-------GAATAGACTG---GC-------------------------------------TGGCT---------GGGAGCAA---------TAATAT------CAACATCAGCAAC---CTTAA--C-ACACCTTTA----------CACACTT
droSec2 scaffold_0:12545111-12545324 + ATCGATGC-----T---TT------GTTGT--------C--------AGT-TAATTAA-TGTTGA---TTATTTCATTGCAGCAT--TACTACAAGAAGCAACACAC--ATCTCTGC--------A--A-----------------------------T---GG----GTAACCACATATATACATACGCCGTTGTATATATCTG--TATGAAA-GAAA-TG-------AGGAAA-AATGGAA--A-------------------------------------------------------T-------GAATAGACTG---GC-------------------------------------TGGCT---------GGGAGCAA---------TAATAT------CAACATCAGCAAC---CTTAA--C-ACACCTTTA----------CACACTT
droYak3 3R:13770702-13770913 - CGCT-------------CT------GGTGC--------C--------AGT-TAATTAA-AGTTAA------TTTCATTGCAGCAT--TACTACAAGAAGCAACACAC--ATCTCTAC--------A--A--C---A--------------ACACCGTCT---GG----GTAACCGCATATATA----CGCCGTTGTATATATCTG--TATGAAA-GAAA-TG-------AGGAAA-AAAGAAA--A-------------------------------------------------------T-------GAATAGACTG---GC-------------------------------------TGGCT---------GGGAGCAA---------TAATAT------CAACATCAGCTAC---CTTAA--C-ACACCTTTA----------CACACTT
droEre2 scaffold_4770:12173410-12173621 + CGCT-------------CT------GGTGC--------C--------AGT-TAATCAA-AGTTCA------TTTCATTGCAGCAT--TACTAAAAGAAGCAACACAC--ATCTCTAC--------A--A--C---A--------------ACACCATCT---GG----GTAACCGCATATATA----CGCCGTTGTATATATCTG--TATGAAA-GAAA-TA-------AGGAAA-AAAGTAA--A-------------------------------------------------------T-------GAAGAGACTG---GC-------------------------------------TGGCT---------GGGAGCAC---------TAATAT------CAACATCAGCTAC---CTTTA--C-ACACCTTTA----------CACACTT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
AGCCGTAC-----C------------------------T--------TGC-TAACCGA-AGCTAATACTTTTTCCGTTGCAGCAT--TACTACAAC-CACAACACACCAA--CCCA--------------------------------------CTTCT---GA----GTAAACGCATATATA----CGCACCTGTATATATGGA--TATA----CA-----------------------------TTT-GAA-AGGGGACTGCACGGA---GGCAG----ATC-CCCACTCTTATTGCATT-------AGACGAACTG---GC-------------------------------------AGACT---------GGCAGCAGCAGCAGAAGCAGCAGTAGCGGCAGCAGCAGCTACAACCAACAAGCTACATCCTTA----------CACACATSizeHit CountTotal NormTotalM022
Male-body
M040
Female-body
M059
Embryo
M062
Head
V043
Embryo
V051
Head
V112
Male-body
SRR902010
Ovary
SRR902011
Testis
SRR902012
CNS imaginal disc
...........................................................................................................................................................................................................................................................AA-AGGGGACTGCACGGA---GGC....................................................................................................................................................................................2014.0040000000004
.............................................................................................................................................................................................................................................................................................................T-------AGACGAACTG---GC-------------------------------------AGACT---------GGCAGCAG........................................................................2614.0040000000310
.....................................................................................................................................................................................................................................................................................................TATTGCATT-------AGACGAACTG---GC-------------------------------------AGAC..........................................................................................2513.0030000000300
........................................................................................................................................................................................................................................................................................................TGCATT-------AGACGAACTG---GC-------------------------------------AGACT---------GGC.............................................................................2613.0030000100020
.........................................................................................................................................................................................................................................................................................................................GAACTG---GC-------------------------------------AGACT---------GGCAGC..........................................................................1912.0020200000000
.................................................................................................................................................................................................................TA----CA-----------------------------TTT-GAA-AGGGGACTGCACG............................................................................................................................................................................................2312.0020200000000
............................................................................................................................................................................................................................................................................................................................CTG---GC-------------------------------------AGACT---------GGCAGCAGC.......................................................................1912.0020000200000
........................................................................................................................................................................................................................................................................................................TGCATT-------AGACGAACTG---GC-------------------------------------AGACT---------GGCA............................................................................2712.0020100000100
.........................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCTACAACCAACAAGCTACATCCTTA----------.......2911.0010100000000
........................................................................................................................................................................................................................................................T-GAA-AGGGGACTGCACGGA---GGC....................................................................................................................................................................................2211.0010000000001
..........................................................................................................................................................................................................GGA--TATA----CA-----------------------------TTT-GAA-AGGGGACTGC...............................................................................................................................................................................................2511.0010000100000
......................................................................................................................................................................................................ATATGGA--TATA----CA-----------------------------TTT-GAA-AGGGGAC..................................................................................................................................................................................................2611.0010000000001
.............................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGAAGCAGCAGTAGCGGCA.................................................2511.0010000100000
.............................................................................................................................................................................................................................................................................................................T-------AGACGAACTG---GC-------------------------------------AGACT---------GGCAGGC.........................................................................2511.0010000000010
..........................................................................................................................................................................AAACGCATATATA----CGCACCTGTATAT...............................................................................................................................................................................................................................................................2611.0010100000000
...........................................................................................ACAAC-CACAACACACCAA--CCCA--------------------------------------CTTC.........................................................................................................................................................................................................................................................................................................2611.0010010000000
.......................................................................................................................................................................................................................CA-----------------------------TTT-GAA-AGGGGACTGCACGGA---.......................................................................................................................................................................................2311.0010000001000
..................................................................................................................................................................................................................................................................................................TCTTATTGCATT-------AGACGAACTG---GC-------------------------------------..............................................................................................2411.0010100000000
..........................................................................................TACAAC-CACAACACACCAA--CCCA--------------------------------------CTTC.........................................................................................................................................................................................................................................................................................................2711.0010100000000
.............................................................................................................................................................................................................................................................................................................T-------AGACGAACTG---GC-------------------------------------AGACT---------GCAG............................................................................2221.0020000000020
........................................................................................................................................................................................................................A-----------------------------TTT-GAA-AGGGGACTGCACGGA---.......................................................................................................................................................................................2211.0010000100000
.......................................................................................................................................................................................................................................................................................................................ACGAACTG---GC-------------------------------------AGACT---------GGCAGCAG........................................................................2311.0010000000100
......................................................................................................................................................................................................................................................................................................................GACGAACTG---GC-------------------------------------AGACT---------GGCAG...........................................................................2111.0011000000000
.....................................................................................................................................................................................................TATATGGA--TATA----CA-----------------------------TTT-GAA-AGGGGAC..................................................................................................................................................................................................2711.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCTACAACCAAC...............................2011.0010010000000
........................................................................................ACTACAAC-CACAACACACCAA--CCCA--------------------------------------CTTC.........................................................................................................................................................................................................................................................................................................2911.0010001000000
.........................................................................................................................................................................................................................................................................................................GCATT-------AGACGAACTG---GC-------------------------------------AGACT---------GG..............................................................................2411.0010100000000
.................................................................................................................CCA--------------------------------------CTTCT---GA----GTAAACGCATAT...................................................................................................................................................................................................................................................................................2211.0010100000000
...............................................................................................................................................................................................................................................................................................CACTCTTATTGCATT-------AGACGAACTG---GC-------------------------------------A.............................................................................................2811.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................ACAACCAACAAGCTACATCCTTA----------CAC....2611.0010100000000
......................................................................................................................................................................................................................................................................GCACGGA---GGCAG----ATC-CCCAC.....................................................................................................................................................................2011.0010010000000
.........................................................................................................................................................................................................................................................................................................................GAACTG---GC-------------------------------------AGACT---------GGCAGCAGCAGCA...................................................................2611.0010100000000
...........................................................................................................................................................................................................................................................................................................ATT-------AGACGAACTG---GC-------------------------------------AGACT---------................................................................................2011.0010100000000
.......................................................................................................................................................................................................................................................TT-GAA-AGGGGACTGCACGGA---GGC....................................................................................................................................................................................2311.0010000000010
............................................................................................................................................................................................................................................................................................................TT-------AGACGAACTG---GC-------------------------------------AGACT---------GGCAGG..........................................................................2511.0010000000010
..........................................................................................................................................................................................................................................................................................................CATT-------AGACGAACTG---GC-------------------------------------AGACT---------GGCA............................................................................2511.0010100000000
.......................................................................................................................................................................................................................................................................................................................ACGAACTG---GC-------------------------------------AGACT---------GGCAGCA.........................................................................2211.0010001000000
...................................................................................................CAACACACCAA--CCCA--------------------------------------CTTCT---GA----GC.............................................................................................................................................................................................................................................................................................2411.0010010000000
........................................................................................................................................................................................................ATGGA--TATA----CA-----------------------------TTT-GAA-AGGGGACT.................................................................................................................................................................................................2511.0010010000000
........................................................................................................................................................................................................ATGGA--TATA----CA-----------------------------TTT-GAA-AGGGGACTG................................................................................................................................................................................................2611.0010000000010
...........................................................................................................................................................................................................................................................................................................ATT-------AGACGAACTG---GC-------------------------------------AGACT---------GGC.............................................................................2311.0010000000001
............................................................................................................................................................................................................................................................A-AGGGGACTGCACGGA---GGC....................................................................................................................................................................................1911.0010000000001
...............................................................................................C-CACAACACACCAA--CCCA--------------------------------------CTTCT---GA----GT.............................................................................................................................................................................................................................................................................................2711.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGTAGCGGCAGCAGCAGCT........................................2311.0010000001000
..........................................................................................................................................................................................................................................................................................................................................................................................................GCAGTAGCGGCAGCAGCAGCT........................................2111.0010000100000
........................................................................................................................................................................................................ATGGA--TATA----CA-----------------------------TTT-GAA-AGGGG....................................................................................................................................................................................................2211.0010000000001
.....................................................................................................................................................................................................................................................................TGCACGGA---GGCAG----ATC-CCCACTC...................................................................................................................................................................2311.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCAACAAGCTACATCCTTA----------CAC....2511.0010010000000
.................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGCAGCAGTAGCGG...................................................1920.5010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGAAGCAGCAGTAGC.....................................................2030.3310000100000
droPer2
TGCCGTAC-----CC--CCGGCGA-GGCAC--------T--------TGC-TAACCGA-AGCTAATTCTTTTTCCGTTGCAGCAT--TACTACAAC-CACAACACACCAA--CCCA--------------------------------------CTTCT---GA----GTAAACGCATATATA----CGCACCTGTATATATGGA--TATA----CA-----------------------------TTT-GAA-AAGGGACTGCACGGA---GGCAG----ATC-CCTATTCTTATTGCATT-------AGACGAACTG---GC-------------------------------------AGACT---------GGCAGCAG---------CAGCAG------CTACAAC---------CAACAAGCTACATCCTTA----------CACACATSizeHit CountTotal NormTotalM021
Embryo
M042
Female-body
V042
Embryo
V050
Head
V057
Head
V111
Male-body
................................................................................................................................................................................................................ATA----CA-----------------------------TTT-GAA-AAGGGACT.................................................................................................................................................................................................1917.007700000
........................................................................................................................................................................................................ATGGA--TATA----CA-----------------------------TTT-GAA-AAGGGACT.................................................................................................................................................................................................2516.006600000
...........................................................................................................................................................................................................................................................................................................ATT-------AGACGAACTG---GC-------------------------------------AGACT---------................................................................................2016.006600000
......................................................................................................................................................................................................ATATGGA--TATA----CA-----------------------------TTT-GAA-AAGGGACT.................................................................................................................................................................................................2714.004400000
.....................................................................................................................................................................................................................................................................................................................AGACGAACTG---GC-------------------------------------AGACT---------GGCAGC..........................................................................2312.002200000
..........................................................................................................................................................................................................GGA--TATA----CA-----------------------------TTT-GAA-AAGGGACT.................................................................................................................................................................................................2312.002200000
...........................................................................................................................................................................................................................................................................................................ATT-------AGACGAACTG---GC-------------------------------------AGAC..........................................................................................1912.002200000
......................................................................................................................................................................................................ATATGGA--TATA----CA-----------------------------TTT-GAA-AAGGG....................................................................................................................................................................................................2412.002200000
...........................................................................................................................................................................................................................................................................................................ATT-------AGACGAACTG---GC-------------------------------------AGACT---------GGC.............................................................................2312.002200000
....................................................................................................................................................................................................ATATATGGA--TATA----CA-----------------------------TTT-GAA-AAGGGACT.................................................................................................................................................................................................2911.001100000
..........................................................................................................................................................................................................................................................................................................CATT-------AGACGAACTG---GC-------------------------------------AGACT---------................................................................................2111.001100000
............................................................................................................................................................................................................................................................................................................TT-------AGACGAACTG---GC-------------------------------------AGACT---------................................................................................1911.001100000
.............................................................................................................................................................................................................................................................................................................T-------AGACGAACTG---GC-------------------------------------AGACT---------GGCAGCA.........................................................................2511.001010000
......................................................................................................................................................................................................ATATGGA--TATA----CA-----------------------------TTT-GAA-A........................................................................................................................................................................................................2011.001100000
...........................................................................................................................................................................................................................................................AA-AAGGGACTGCACGGA---GGCA...................................................................................................................................................................................2111.001100000
............................................................................................................................................................................................................A--TATA----CA-----------------------------TTT-GAA-AAGGGACG.................................................................................................................................................................................................2111.001100000
......................................................CCGA-AGCTAATTCTTTTTCCGTTGCAG.....................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
.......................................................................................................................................................................................................................................................TT-GAA-AAGGGACTGCACGGA---GGCAG----ATC-..........................................................................................................................................................................2811.001000001
.....................................................................................................................................................................................................TATATGGA--TATA----CA-----------------------------TTT-GAA-AAGGGACT.................................................................................................................................................................................................2811.001100000
.................................................................................................................................................................................................................TA----CA-----------------------------TTT-GAA-AAGGGACT.................................................................................................................................................................................................1811.001100000
.................................................................................................................................................................................................................................................................................................TTCTTATTGCATT-------AGACGAACTG---GC-------------------------------------A.............................................................................................2611.001010000
.......................................................................................................................................................................................................................................................................................................TTGCATT-------AGACGAACTG---GC-------------------------------------AGACT---------................................................................................2411.001100000
............................................................................................................................................................................................................A--TATA----CA-----------------------------TTT-GAA-AAGGGACT.................................................................................................................................................................................................2111.001100000
....................................................................................................................................................................................................................................................................................................TTATTGCATT-------AGACGAACTG---GC-------------------------------------AGACT---------................................................................................2711.001100000
...........................................................................................................................................................................................................................................................AA-AAGGGACTGCACGGA---GGC....................................................................................................................................................................................2011.001001000
......................................................................................................................................................................................A----CGCACCTGTATATATGGA--T.......................................................................................................................................................................................................................................................2011.001001000
...................................................................................................................................................................................................................................................................................................CTTATTGCATT-------AGACGAAC..........................................................................................................................................1911.001100000
............................................................................................................................................................TCT---GA----GTAAACGCATATATA----CGCACCTG....................................................................................................................................................................................................................................................................2811.001010000
..........................................................................................................................................................................................................................................................................................................................................................................GACT---------GGCAGCAG---------CAGCAG------...................................................1860.171010000
droWil2
AATTTTCC-----CC--ATG----TAAATGAGAAAAAATTAATAATCAAT-----TAA-TTTCC----AAAATTAATTTCAGCATCTAACTACAA--TACAACACAC--C--TCTAAATACATATATCCAAA---AA-GAAAAGAAAA------GAACAGAATA----AACAACACAAATATA----TATAATTATATATATATA--TATA----TA-CA------------TA-AA-----T--ATATAGTA-AAGCGACTGCAGACAAACGGTAAA-CCACCTCTCATTCTCATGGCAT-------------ATTTA---GC-------------------------------------AAGGCGTCAATACTGGCATT---------GGGAACAGTTGATGAAAGGAGAATT---------------AAATCTTA----------CACACATSizeHit CountTotal NormTotalM020
Head
M045
Female-body
V117
Male-body
V118
Embryo
V119
Head
...........................................................................................................................................................................................................................................................TA-AAGCGACTGCAGACAAACGGT....................................................................................................................................................................................2313.00320010
..........................................................................................................................................................................................................................................................................................................................................................................................ATT---------GGGAACAGTTGATGAAAGGA.............................................2312.00200020
.....................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAGAATT---------------AAATCTTA----------CACAC..2311.00100010
..................................................................................................................................................................................................................................................................GACTGCAGACAAACGGTA...................................................................................................................................................................................1811.00100010
..................................................................................................................................................................................................................................................................................TAAA-CCACCTCTCATTCTCATGGCAT-------------.............................................................................................................................................2611.00100010
..............................................................................................................................................................................................................................................................................................................................................................................GTCAATACTGGCATT---------GGGA.............................................................1911.00100010
.....................................................................................................................................................................................................................................................ATATAGTA-AAGCGACTGCAGACAAACG......................................................................................................................................................................................2711.00100010
.........................................................................................................................................................................................................................................................................................................................................................................AAGGCGTCAATACTGGCATT---------GGG..............................................................2311.00100100
...............................................................................................................................CCAAA---AA-GAAAAGAAAA------GAACAGAA.....................................................................................................................................................................................................................................................................................................2511.00100010
..........................................................................................................................................................................................................................................................................................................................................................................................ATT---------GGGAACAGTTGATGAA.................................................1911.00100010
.........................................................................................................................................................................................................................................................................GACAAACGGTAAA-CCACCTCT........................................................................................................................................................................2111.00100010
.....................................................................................................................................................................................................................................................................................................................................................................................CTGGCATT---------GGGAACAGTTGATGAAAGG..............................................2711.00101000
.........................................................................................................................................................................................................................................................................................................................................................................................CATT---------GGGAACAGTTGATGAAAGGAGA...........................................2611.00100010
.........................................................................................................................................................................................................................................................................................................................................................................................CATT---------GGGAACAGTTGATGAAAGGAG............................................2511.00100010
..........................................................................................................................................................................................................................................................................................................................................................................................ATT---------GGGAACAGTTGATGAAAGGAG............................................2411.00100010
..............................................................................................................................................................................................................................................................AAGCGACTGCAGACAAACGGTA...................................................................................................................................................................................2211.00100010
..................................................................................................................................................................................................................................................................................................................................................................................ATACTGGCATT---------GGGAACAG.........................................................1911.00100010
..........................................................................................................................................................................................................................................................................................................................ATTTA---GC-------------------------------------AAGGCGTCAATACT................................................................................2111.00100010
......................................................................................................................................................................................................................................................................................................................................................................................TGGCATT---------GGGAACAGTTGATGAAAGG..............................................2611.00100100
.....................................................................................................................................................................................................................................................ATATAGTA-AAGCGACTGCAGACAAA........................................................................................................................................................................................2511.00100010
.................................................................................................................................................AAA------GAACAGAATA----AACAACACAAAT...................................................................................................................................................................................................................................................................................2511.00100010
............................................................................................................................................................................................................................................................A-AAGCGACTGCAGACAAACGGT....................................................................................................................................................................................2211.00110000
.........................................................................................................................................................................................................................................................................................................................................................................................CATT---------GGGAACAGTTGATGAAA................................................2111.00100010
...........................................................................................................................................................................................................................................................................................................................................................................................................CAGTTGATGAAAGGAGAATT---------------.........................2011.00101000
droVir3
AACCACAC-----AC--ACA--------------------------------------------------------------------------------------C--A--CACA--------------------------------------CACAC---AC----ACACACACACATGCACATACCCAGACACACGCACACA--CATGCAA-CTGC-CA-------GGCGAG-ACAGCAA--C-------------------------------------------------------T-------GGAGAGTCAG---GGCGTTACATAAGAATCCTTTTAATTCAAGTTGACATTTCGCAC---------AGCAGCAGCAGCAGCAGCAGCAGCAGCGGCAGCGGCGGCTGCAGCTCACC--AAGAAATTCAAGAAATTTTCAAATTTTTSizeHit CountTotal NormTotalM027
Male-body
M028
Head
M047
Female-body
M061
Embryo
SRR060654
Ovary
SRR060655
Testis
SRR060656
Ovary
SRR060657
Testis
SRR060658
Ovary
SRR060659
Testis
SRR060660
Ovary
SRR060661
Embryo
SRR060662
Embryo
SRR060663
Embryo
SRR060664
Male-body
SRR060665
Female-body
SRR060666
Male-body
SRR060667
Female-body
SRR060668
Male-body
SRR060669
Female-body
SRR060670
Testis
SRR060671
Male-body
SRR060672
Female-body
SRR060673
Ovary
SRR060674
Ovary
SRR060675
Ovary
SRR060676
Ovary
SRR060677
Ovary
SRR060678
Testis
SRR060679
Testis
SRR060680
Testis
SRR060681
Testis
SRR060682
Embryo
SRR060683
Testis
SRR060684
Embryo
SRR060685
Embryo
SRR060686
Embryo
SRR060687
Embryo
SRR060688
Ovary
SRR060689
Testis
SRR1106712
embryo_0-2h
SRR1106713
embryo_0-2h
SRR1106714
embryo_2-4h
SRR1106715
embryo_4-6h
SRR1106716
embryo_4-6h
SRR1106717
embryo_6-8h
SRR1106718
embryo_6-8h
SRR1106719
embryo_8-10h
SRR1106720
embryo_8-10h
SRR1106721
embryo_10-12h
SRR1106722
embryo_10-12h
SRR1106723
embryo_12-14h
SRR1106724
embryo_12-14h
SRR1106725
embryo_14-16h
SRR1106726
embryo_14-16h
SRR1106727
larvae
SRR1106728
larvae
SRR1106729
mixed whole adult body
SRR1106730
embryo_16-30h
V047
Embryo
V053
Head
V116
Male-body
GSM1528803
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAGCAGCAG.........................................................19200.153003000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAGCGGCAG................................................19200.102002000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................CGCAC---------AGCAGCAGCAGCAGC.................................................................20200.051000000000000000000000000000000000000000000000000000000000001000
.......................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAGCAGCAGCAGCA.......................................................25200.051000000000000000000000010000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCGGCAGCGG.............................................19200.051001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCAGCGGCAGC...............................................22200.051000100000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCGGCAGCGGC............................................20200.051001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAGCAGCGGC..................................................21200.051001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCGGCAGCG..............................................19200.051000000000000000000000010000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAGCAGCAGCG....................................................22200.051000000000000000000000010000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAGCAGCAGCAGC.....................................................23200.051000000000000000000000000000000000000100000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................GCAC---------AGCAGCAGCAGCAGC.................................................................19200.051001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAGCAGCAGCAGCAGC.....................................................27200.051000000000000000000000000001000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCGGCAGCGG.............................................21200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
ACCACAAC-----CA--CAA----CAACAACAACAACAGCAGCAGCAAGT-----TGG-CGTGC----CAGGGTAAAC---------------------CGATGTAC--A--TAT---------------------------------------------------------------GTATG----TATGGCAGAGTACATATG--TATG----TA-CA------------TA-CG-----GTCCTGT---GAATGTGACACC---T--------------AC-GCAACGCGAAGCGCATTAAAGTGCGAACAC------------------------------------------------AGC---------AGCAGCAGCAGCAGCAGCAGCAGCAGCGGCAGCAGCAGCAGCCGCCAACA--CAGCAGCCCAA----------CTCCAATSizeHit CountTotal NormTotalM046
Female-body
V041
Embryo
V049
Head
V056
Head
M060
Embryo
V110
Male-body
....................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAGCGGCAGCAGC............................................23200.102000020
.................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAGCAGCGGCA.................................................21200.102000020
...................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAGCGGC..................................................18200.051000010
.....................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCGGCAGCAGCAGCA........................................26200.051000010
droGri2
CAG-------------------------------------------------------------------------------CA---TACTACAG--AACAACACAT--A--CACAC----ACACACAC----------------------AAACATAT---AC----ACAAC-ACACACATA----C----------ACATACA--GAAG-------------------------------C--ATCT-ATA-AAGCGACTGCAG------GGCAG----ACCTCATATTTTCATGGCATA-------ATGCAGTCTA---GC-------------------------------------GGAGC---------A--GACAA---------CAAGAA------CAACAACAACCAT------AT---------TACA----------CACATTTSizeHit CountTotal NormTotalM041
Female-body
V109
Male-body
..............................................................................................................................................................................................................................................................AAGCGACTGCAG------GGCAG----ACC...........................................................................................................................................................................2011.00110
..........................................................................................................................................................................................................................................................ATA-AAGCGACTGCAG------GGCAG----ACCTC.........................................................................................................................................................................2511.00101
.......................................................................................................................................................................................................................................................................................................................GCAGTCTA---GC-------------------------------------GGAGC---------A--GACA.........................................................................2011.00101
droAna3
TCCT-------------GT------AGAGC----C---T--------TATTTATTTAT-AAA------ATTTTTCATTGCAGCAT--TACTACAAA-ATCGACATAT--A--CACAT----ACGGACACAAA---AA-GGCACATGGA------CAATTGAGGA----GTAACCGCATATATA----CAAAACTGTATATAGAAA--AACC----AA-AA------------CA-AACGGA-------TGG--------------------------GAGAAGC-GTCAGGATGATTGCATT-------AAATAGATTGTCTGC-------------------------------------TGGCT---------GGGAGCAA---------CTATTT------AAACCGCAGCTAC---CTTTA--C-GCATTTTTA----------CACACATSizeHit CountTotal NormTotalM044
Female-body
M058
Embryo
V039
Embryo
V055
Head
V105
Male-body
V106
Head
..............................................................................................................................CACAAA---AA-GGCACATGGA------C............................................................................................................................................................................................................................................................................................................1913.003021000
..........................................................................................................................................................................................................................................................................................................................GATTGTCTGC-------------------------------------TGGCT---------GGG.............................................................................1812.002110000
....................................................................................................................................................................................................................................................................................................................................................................................................................AAACCGCAGCTAC---CTTTA--C-..........................1911.001010000
...............................................................................................................................................................................................................................................................................................CAGGATGATTGCATT-------AAAT..............................................................................................................................................1911.001001000
....................................................................................................................................................................................ATA----CAAAACTGTATATAGAAA--AACC----................................................................................................................................................................................................................................................2511.001010000
............................................................................................................................................................................................................................................................................................................................TTGTCTGC-------------------------------------TGGCT---------GGGAGCAA---------CT.............................................................2311.001100000
.......................................................................................................................................AA-GGCACATGGA------CAATTGAGGA----GT.............................................................................................................................................................................................................................................................................................2411.001010000
.............................................................................................................................................................................................................................................................................................................................TGTCTGC-------------------------------------TGGCT---------GGGAGCA.........................................................................1911.001010000
.........................................................................................................................................................................................................................................................................................................................AGATTGTCTGC-------------------------------------TGGCT---------GGGAGCAA---------C..............................................................2511.001010000
........................................................................................................................................................................................................................A-AA------------CA-AACGGA-------TGG--------------------------GAGA..............................................................................................................................................................................1811.001010000
...............................................................................................................................ACAAA---AA-GGCACATGGA------CAATTGAGGA----...............................................................................................................................................................................................................................................................................................2711.001100000
.........................................................................................................................................................................................................................................................................................................................AGATTGTCTGC-------------------------------------TGGCT---------GGG.............................................................................1911.001010000
.........................................................................................................................................................................................................................................................................................................................AGATTGTCTGC-------------------------------------TGGCT---------GGGAGCAA---------CTAT...........................................................2811.001000010
..............................................................................................................................................................................................................................................GGA-------TGG--------------------------GAGAAGC-GTCAGGATG.................................................................................................................................................................2211.001010000
................................................................................................................................................................................................................ACC----AA-AA------------CA-AACGGA-------TGG--------------------------GAGA..............................................................................................................................................................................2211.001010000
..............................................................................................................................CACAAA---AA-GGCACATGGA------CAATTGAGG....................................................................................................................................................................................................................................................................................................2711.001001000
.................................................................................................................................AAA---AA-GGCACATGGA------CAATTGAGGA----...............................................................................................................................................................................................................................................................................................2511.001100000
........................................................................................................................................................................................................................................CA-AACGGA-------TGG--------------------------GAGAAGC-GTCAG.....................................................................................................................................................................2311.001001000
...........................................................................................................................................................................................................................................AACGGA-------TGG--------------------------GAGAAGC-GTCAGGAT..................................................................................................................................................................2411.001000010
....................................................................................................GACATAT--A--CACAT----ACGGACA.......................................................................................................................................................................................................................................................................................................................................2011.001010000
............................................................................................................................................................................................................................................ACGGA-------TGG--------------------------GAGAAGC-GTCAGGATG.................................................................................................................................................................2411.001000001
............................................................................................................................................................................................................................................................................................................TT-------AAATAGATTGTCTGC-------------------------------------C.............................................................................................1811.001010000
...............................................................................................................................................................................................................................................GA-------TGG--------------------------GAGAAGC-GTCAGGAT..................................................................................................................................................................2011.001000010
..........................................................................................................................................................................................................................................................................................................................GATTGTCTGC-------------------------------------TGGCT---------GGGAGC..........................................................................2111.001000001
..........................................................................................................T--A--CACAT----ACGGACACAAA---AA-GGCACATG.....................................................................................................................................................................................................................................................................................................................2811.001100000
.........................................................................................................................................................................................................................................................................................................................AGATTGTCTGC-------------------------------------TGGCT---------GGGAGCAA---------CT.............................................................2611.001100000
........................................................................................................................................................................................................................................CA-AACGGA-------TGG--------------------------GAGAAGC-..........................................................................................................................................................................1811.001010000
...................................................................................................................................................................................................................................................................................................ATGATTGCATT-------AAATAGATTGTC......................................................................................................................................2311.001100000
..........................................................................................................T--A--CACAT----ACGGACACAAA---AA-GGCACAT......................................................................................................................................................................................................................................................................................................................2711.001010000
.......................................................................................................................................................................................................................AA-AA------------CA-AACGGA-------TGG--------------------------GAGAAGC-..........................................................................................................................................................................2211.001010000
.................................................................................................................................................................................................................CC----AA-AA------------CA-AACGGA-------TGG--------------------------GA................................................................................................................................................................................1911.001001000
droBip1
AAGCACAG-----CCCCCTG-CG--GAGGA--------C--------AATGTATTCAT-AAA------TTTTGTCATTGCAGCAT--TACTACAAA-ATCGACATAA--A--CACAT----ACGGACAC--A---AAGGGCACATGGA------CAACGGAGGAGAGTATAACCGCATATATA----CAAAACTGTATATAGGAA--CAA---CCAA-AA------------CAA-ACGGA-------TGG--------------------------GACTAGC-GTCGGGATGATTGCATT-------AAATAGATTGTCTGC-------------------------------------TGGCT---------GGGAGCAA---------CTATTT------AAACCGCAGCTAC---CTTTA--C-GCATTTTTA----------AACACACSizeHit CountTotal NormTotal
No Reads
droKik1
TCCTCTGC-----AT--AAA----CAA-----------TTAAAA------A-AATGAATAATTTC-----TCTCATTTTTAGCAT--TACTACAAA-TACAACACAC--A--CACAC----------------------------------ATCCATCT---GA----GTAAACGCATATATA----CTAGTTTGTATATATCTG--AAAAAAA-AATA-TT-------ATATAAAACGGTAA--A---------------------GA---GGG---------A------CTCATTGCATT-------GAATAGACTG---GC-------------------------------------TGGCT---------GGGATTAA---------CATTAT------CAACAGCAGCTAC---CTTTA--CAACACCTCTAC--------ACACACTTSizeHit CountTotal NormTotal
No Reads
droFic1
TCCC-------------CC------ACTGC--------C--------AGT-TAATTAA-TAATAC---C-TTTTTTTTGCAGCAT--AACTATGAA-AACAACACAC--C--TCCGC--------A-------------------------CACCAACT---GA----GAAGCCGCATATATA----TGCAATTGTATATATATAAATA-GAGA-GAAA-AGAAAAGAAAGGAAA-AAGGAAA--A-------------------------------------------------------T-------GAATAGACTG---GC-------------------------------------TGGCT---------GGGAGCAA---------AAATAT------CAACATCAGCTAC---CTTTA--C-ACACCTTTA----------CACACTTSizeHit CountTotal NormTotal
No Reads
droEle1
CATTATTT-----CCCTCT------TGTCG--------T--------AGT-TAATTAA-AGTAAC------TTTCGTTGCAGCAT--AACTACAAA-TACAACACAC--CTCACTCA-----C--A-----CTTAC--------------AAACCATCT---GA----ATAACCGCATATATA----CGCAGTTGTATATATATA--GA-----------------------AGA-GAAGGAA--A-------------------------------------------------------T-------GAATAGACTG---GC-------------------------------------TGGCT---------GCGAGAAA---------TAATAT------CAACATCAGCTAC---CTTTA--C-AAACCTTTA----------CACACTTSizeHit CountTotal NormTotal
No Reads
droRho1
TTTCTATC-----C--TCT------AGTGC--------T--------AGT-TAATTAA-AATTAC------TTTCGTTGCAGCAT--AACTACAAA-TACAACACAC--C--CTCAC--------A--C--A---A--------------AAACCATCT---TA----GTAACCGCATATATA----CACAGTTGTATATATATA--GATAAAA-GA-----------------A-AAGGAAA--A-------------------------------------------------------G-------GAATAGACTG---GC-------------------------------------TGGCT---------GGGAGCAA---------TAATAT------CAACATCAGCTAC---CTTTA--C-ACACCTTTA----------CACACTTSizeHit CountTotal NormTotal
No Reads
droBia1
AACCTTTT-----TCCTCC------AATGGCAGCTTTAAGAACT---------------ATTTGT------TTCCATTGCAGCAT--TACTACAAA-AACAACACAC--A--TCTAA--------A--A------AA---------GAGAACACCATCT---GA----GTAACCGCATATATA----CGCAATTGTATATACATT--TAGAGAA-GA-------------AGGAA-AAGGAAA--A-------------------------------------------------------T-------GAATAGACTG---GC-------------------------------------TGGCT---------GGGAGCAA---------TAATAT------CAACATCAGCTAC---CTTTA--C-ACACCTTTA----------CACACTTSizeHit CountTotal NormTotal
No Reads
droTak1
CCCC-------------TT------AAAGC--------C--------AGT-TAATAAA-AGTTGA------TTATATTGCAGCAT--TACTACAAA-AACAACACAC--C--TCTAA--------A--A--A------GAAAA-AAAAGAAAACCATTT---GA----GTAACCGCATATATA----CGCAGTTGTATATATAT---TATAGAA-GAAA-------------GAA-AAGGAAA--A-------------------------------------------------------T-------GAATAGACTG---GC-------------------------------------TGGCT---------GGGAGCAA---------TAATAT------CAACATCAGCTAC---CTTTA--C-TCACCTTTA----------CACACTTSizeHit CountTotal NormTotal
No Reads
droEug1
AGCATTTCTCTTTCTCTCT------AATGC--------C--------AGT-TAAATAA-AGTTAA------TTCCATTGCAGCAT--TACTACAAA-AACAACACAC--C--TCTAC--------A--A--A---AA-GAAAAGAAAA------GA-AA---AG----AAAACCCCATATATA----CGCAGTTGTATATATACA--GAA---A-GAAA------------AAAA-AAGAAAC--A-------------------------------------------------------T-------GTATAGACTG---GC-------------------------------------TGGCT---------GGGAGCAA---------TAATAT------CAACATCAGCTAC---CTTAA--C-ACACCTTTA----------CACACTTSizeHit CountTotal NormTotal
No Reads
dm3
CT---------------TT------GTTGC--------C--------AGT-TCATTAA-AGTTGA---TTATATCATTGCAGCAT--TACTACAAGAAGCAACACAC--ATCTCTGC--------A--A--C---A--------------ACACCATCT---GG----GTAACCGCATATATACATACGCCGTTGTATATATCTG--TATGAAA-GAAA-TG-------AGGAAA-AAAGGAA--A-------------------------------------------------------T-------GAATAGACTG---GC-------------------------------------TGGCT---------GGGAGCAA---------TAATAT------CAACATCAGCAAC---CTTAA--C-ACACCTTTA----------CACACTTSizeHit CountTotal NormTotalGSM154618
Ovary
GSM154620
Ovary
GSM154621
Ovary
GSM154622
Ovary
GSM180328
Head
GSM180329
Mixed-body
GSM180330
Embryo
GSM180331
Embryo
GSM180332
Embryo
GSM180333
Embryo
GSM180334
Larvae
GSM180335
Disc
GSM180336
Pupae
GSM180337
S2
GSM231091
Ovary
GSM239041
Head
GSM239050
Head
GSM239051
S2
GSM239052
S2
GSM246084
Head
GSM266765
S2
GSM280082
Ovary
GSM280083
Ovary
GSM280084
Ovary
GSM280085
Testis
GSM280086
Ovary
GSM280087
S2-NP
GSM280088
S2-NP
GSM312995
Head
GSM313160
Head
GSM313161
Head
GSM313162
Head
GSM313163
Head
GSM313164
Head
GSM313165
Head
GSM343287
Embryo
GSM379050
Ovary
GSM379051
Ovary
GSM379052
Ovary
GSM379053
Ovary
GSM379054
Ovary
GSM379055
Ovary
GSM379056
Ovary
GSM379057
Ovary
GSM379058
Ovary
GSM379059
Ovary
GSM379060
Ovary
GSM379061
Ovary
GSM379062
Ovary
GSM379063
Ovary
GSM379064
Ovary
GSM379065
Ovary
GSM379066
Ovary
GSM379067
Ovary
GSM424739
S2
GSM424740
S2
GSM424741
S2
GSM467729
Female-body
GSM467730
Female-body
GSM467731
Female-body
M002
CS
M003
Male-body
M004
Male-body
M005
ML-DmD32
M006
ML-DmD32
M029
OSC
M030
OSC
M031
OSC
M032
S2-R+
M033
S2-R+
M034
S2-R+
M035
S2-R+
M036
S2-R+
M037
S2-R+
M038
S2-R+
M039
S2-R+
M048
S2-R+
OSS2
OSS
OSS6
OSS
OSS7
OSS
OSS8
OSS
S1
Head
S10
Embryo
S11
Embryo
S12
Embryo
S13
Embryo
S14
Embryo
S15
S2-GMR
S16
Kc
S17
Larvae
S18
Larvae
S19
Pupae
S2
Head
S20
Pupae
S21
Disc
S22
Head
S23
Female-body
S24
Male-body
S25
Larvae
S26
Larvae
S27
Pupae
S28
Pupae
S29
Head
S3
Male-body
S30
S2-GMR
S31
S2
S32
S2
S33
Kc
S34
Kc
S35
Kc
S4
Female-body
S5
Disc
S6
Embryo
S7
Embryo
S8
S2
S9
Embryo
SRR001337
Head
SRR001338
Head
SRR001339
Head
SRR001340
Head
SRR001341
Head
SRR001342
Head
SRR001343
Head
SRR001344
Head
SRR001345
Head
SRR001346
Head
SRR001347
Head
SRR001348
Head
SRR001349
Head
SRR001664
Head
SRR010951
Ovary
SRR010952
Ovary
SRR010953
Ovary
SRR010954
Ovary
SRR010955
Ovary
SRR010956
Ovary
SRR010957
Ovary
SRR010958
Ovary
SRR010959
Ovary
SRR010960
Ovary
SRR014268
Embryo
SRR014269
Embryo
SRR014270
Embryo
SRR014271
Embryo
SRR014272
Embryo
SRR014273
Ovary
SRR014274
Ovary
SRR014275
Ovary
SRR014276
Ovary
SRR014277
Ovary
SRR014278
Ovary
SRR014279
Ovary
SRR014280
Ovary
SRR014281
Ovary
SRR014282
Ovary
SRR023197
S2
SRR023399
S2
SRR023400
S2
SRR023402
S2
SRR023407
S2
SRR029028
S2
SRR029029
S2
SRR029030
S2
SRR029031
S2
SRR029032
S2
SRR029033
S2
SRR029608
Head
SRR029633
Head
SRR030145
gb3
SRR031692
Head
SRR031693
Head
SRR031694
Head
SRR031696
Head
SRR031697
Head
SRR031698
Head
SRR031699
Head
SRR031700
Head
SRR031701
Head
SRR031702
Head
SRR031703
Head
SRR031704
Head
SRR032092
S2
SRR032093
S2
SRR032094
S2
SRR032095
S2-NP
SRR032096
S2-NP
SRR032152
Head
SRR060643
Testis
SRR060644
Ovary
SRR060645
Testis
SRR060646
Ovary
SRR060647
Ovary
SRR060648
Ovary
SRR060649
Ovary
SRR060650
Testis
SRR060651
Ovary
SRR060652
Testis
SRR060653
Ovary
SRR065151
Ovary
SRR065152
Ovary
SRR065153
Ovary
SRR065154
Ovary
SRR065155
Ovary
SRR065800
Ovary
SRR065801
Ovary
SRR065802
Ovary
SRR065803
Ovary
SRR065804
Ovary
SRR065805
Ovary
SRR065806
Ovary
SRR065807
Ovary
SRR097865
S2-NP
SRR097866
S2-NP
SRR097867
S2-NP
SRR298536
Ovary
SRR298537
Ovary
SRR298711
Ovary
SRR298712
Ovary
SRR317110
Ovary
SRR317111
Ovary
SRR317112
Ovary
SRR317113
Ovary
SRR317114
Ovary
SRR317115
Ovary
SRR317116
Ovary
SRR317117
Ovary
SRR341115
S2
SRR341116
S2
SRR341117
S2
SRR341118
S2
SRR351332
Mixed-body
SRR351333
Mixed-body
T004
OSC
T005
CME-L1
V001
Embryo
V002
Embryo
V003
S2
V006
Female-body
V007
Head
V008
S2
V009
CME-L1
V010
ML-DmD20-C5
V011
Sg4
V012
Male-body
V013
Head
V014
DTT
V015
DreRFHV
V018
Kc167
V019
GM2
V020
S2-R+
V021
ML-DmD21
V022
ML-DmD32
V023
Head
V024
Kc167
V025
S2-R+
V026
1182-2H
V027
ML-DmD21
V028
CME-W1-Cl.8+
V029
ML-DmD9
V030
ML-DmD8
V031
GM2
V032
S1
V033
CME-W1-Cl.8+
V034
ML-DmD16-C3
V035
ML-DmD32
V036
ML-DmD20-C5
V037
S2
V038
S2
V063
Ovary
V0632
Ovary
V064
Ovary
V0642
Ovary
V065
Ovary
V0652
Ovary
V066
Ovary
V0662
Ovary
V067
S2-NP
V073
mbn2
V074
S3
V075
ML-DmBG1-C1
V076
ML-DmBG3-C2
V077
Head
V078
Head
V079
Head
V080
Head
V081
Embryo
V082
Embryo
V083
Male-body
V084
Female-body
V085
CME-W2
V086
Female-body
V088
Ovary
V0882
Ovary
V089
Ovary
V0892
Ovary
V090
Male-body
V091
fGS/OSS
V092
Male-body
V093
Male-body
V094
S2-R+
V095
S2-R+
V096
Ovary
V097
Ovary
V098
Ovary
V125
ML-DmD9
V126
CME-L1
V127
G2
V128
S3
V129
ML-DmBG1-C1
V130
ML-DmBG3-C2
V131
ML-DmD16-C3
V132
ML-DmD32
V133
Sg4
V134
ML-DmD8
V135
CME-W2
V136
Male-body
V137
Head
V138
Male-body
V139
Female-body
V140
Female-body
V141
Female-body
V142
Female-body
V144
OSC
V145
S2
V146
S1
V147
1182-2H
V148
mbn2
GSM1528798
follicle cells
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droSim2
CT---------------TT------GTTGC--------C--------AGT-TAATTAA-AGTTGA---TTATTTCATTGCAGCAT--TACTACAAGAAGCAACACAC--ATCTCTGC--------A--A--C---A--------------ACACCACAT---GG----GTAACCACATATATACATACGCCGTTGTATATATCTG--TATGAAA-GAAA-TG-------AGGAAA-AATGGAA--A-------------------------------------------------------T-------GAATAGACTG---GC-------------------------------------TGGCT---------GGGAGCAA---------TAATAT------CAACATCAGCAAC---CTTAA--C-ACACCTTTA----------CACACTTSizeHit CountTotal NormTotalM023
Head
M024
Male-body
M025
Embryo
M053
Female-body
O001
Testis
O002
Head
SRR553485
Ovary
SRR553486
Ovary
SRR553487
Ovary
SRR553488
Ovary
SRR618934
Ovary
V044
Embryo
SRR902008
Ovary
SRR902009
Testis
SRR1275487
Male larvae
SRR1275485
Male prepupae
SRR1275483
Male prepupae
..............................................................................................................................................................................................................................................TGGAA--A-------------------------------------------------------T-------GAATAGACTG---GC-------------------------------------TGGCT---------GG..............................................................................2616.00600000001100031000
............................................................................................................................................................................................................................TG-------AGGAAA-AATGGAA--A-------------------------------------------------------T-------GAATAGAC..........................................................................................................................................2515.00500000001310000000
................................................................................................................TCTGC--------A--A--C---A--------------ACACCACAT---GG----GTAACCACA......................................................................................................................................................................................................................................................................................2914.00400000012010000000
..........................................................................................................................................................................................................................................A-AATGGAA--A-------------------------------------------------------T-------GAATAGACTG---GC-------------------------------------TGGC..........................................................................................2613.00300000002000001000
.......................................................................................................................................................................................................TATCTG--TATGAAA-GAAA-TG-------AGGAAA-AA.........................................................................................................................................................................................................................2713.00300000020000010000
...........................................................................................................................................................................................CGCCGTTGTATATATCTG--TATGAAA-GAAA-...........................................................................................................................................................................................................................................2913.00300000012000000000
..............................................................................................................................................................................................................................................TGGAA--A-------------------------------------------------------T-------GAATAGACTG---GC-------------------------------------TGGCT---------GGG.............................................................................2713.00300000011100000000
..............................................................................................................................................................................................................................................TGGAA--A-------------------------------------------------------T-------GAATAGACTG---GC-------------------------------------TGGCT---------G...............................................................................2513.00300000000000030000
.........................................................................................................................................................................................TACGCCGTTGTATATATCTG--TATGAAA-................................................................................................................................................................................................................................................2713.00300000002010000000
............................................................................................................................................................................................................................TG-------AGGAAA-AATGGAA--A-------------------------------------------------------T-------GAATAGACT.........................................................................................................................................2613.00300000012000000000
..............................................................................................................................................................................................................................................TGGAA--A-------------------------------------------------------T-------GAATAGACTG---GC-------------------------------------TGGC..........................................................................................2312.00200000001000010000
......................................................................................................CACAC--ATCTCTGC--------A--A--C---A--------------ACACCACAT---GG----G..............................................................................................................................................................................................................................................................................................2912.00200000002000000000
.........................................................................................................................................................................................TACGCCGTTGTATATATCTG--TATGAA..................................................................................................................................................................................................................................................2612.00200000000020000000
.................................................................................................................CTGC--------A--A--C---A--------------ACACCACAT---GG----GT.............................................................................................................................................................................................................................................................................................2112.00200200000000000000
.................................................................................................AGCAACACAC--ATCTCTGC--------A--A--C---A--------------ACACCAC..........................................................................................................................................................................................................................................................................................................2912.00200000000000020000
.....................................................................................................................................................................................................TATATCTG--TATGAAA-GAAA-TG-------AGGAAA-AA.........................................................................................................................................................................................................................2912.00200000011000000000
............................................................................................................................................................................................................................................AATGGAA--A-------------------------------------------------------T-------GAATAGACTG---GC-------------------------------------TGGC..........................................................................................2512.00200000001000010000
.........................................................................................................................................................................................TACGCCGTTGTATATATCTG--TATGAAA-GA..............................................................................................................................................................................................................................................2912.00200000011000000000
..............................................................................................................................................................................................................................................TGGAA--A-------------------------------------------------------T-------GAATAGACTG---GC-------------------------------------TGGCA---------................................................................................2412.00200000000000020000
........................................................................................................CAC--ATCTCTGC--------A--A--C---A--------------ACACCACAT---GG----G..............................................................................................................................................................................................................................................................................................2712.00200000010010000000
.........................................................................................................................................................................................................................................AA-AATGGAA--A-------------------------------------------------------T-------GAATAGACTG---GC-------------------------------------TGGC..........................................................................................2712.00200000001000010000
........................................................................................................CAC--ATCTCTGC--------A--A--C---A--------------ACACCACAT---GG----GT.............................................................................................................................................................................................................................................................................................2812.00200000020000000000
...............................................................................................................................................................................................................TATGAAA-GAAA-TG-------AGGAAA-AATGGA.....................................................................................................................................................................................................................2511.00100000000010000000
..........................................................................................................................................................................................................................................A-AATGGAA--A-------------------------------------------------------T-------GAATAGACTG---GC-------------------------------------TG............................................................................................2411.00100000000000010000
..................................................................................................GCAACACAC--ATCTCTGC--------A--A--C---A--------------ACACC............................................................................................................................................................................................................................................................................................................2611.00100100000000000000
.............................................................................................................................................................................................................................G-------AGGAAA-AATGGAA--A-------------------------------------------------------T-------GAATAGACTG---.....................................................................................................................................2611.00100000000000001000
................................................................................................................................................................................................................ATGAAA-GAAA-TG-------AGGAAA-AATGGAA--A-------------------------------------------------------..........................................................................................................................................................2611.00100000000010000000
......................................................................................................................................................................................ACATACGCCGTTGTATATAT.............................................................................................................................................................................................................................................................2011.00100000000001000000
.......................................................................................................................................................................................CATACGCCGTTGTATATATCTG--TA......................................................................................................................................................................................................................................................2411.00100000001000000000
..............................................................................................................................................................................................................................................TGGAA--A-------------------------------------------------------T-------GAATAGACTG---GC-------------------------------------TGGT..........................................................................................2311.00100000000000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCAAC---CTTAA--C-ACACCTTTA----------CACACT.2911.00100000001000000000
.....................................................................................................................................................................................................TATATCTG--TATGAAA-GAAA-TG-------AGGA..............................................................................................................................................................................................................................2511.00100001000000000000
..........................................................................................................................................................................................................................................A-AATGGAA--A-------------------------------------------------------T-------GAATAGAC..........................................................................................................................................1811.00100000000001000000
.........................................................................................................................................................................................TACGCCGTTGTATATATCTG--TATGAAA-GAA.............................................................................................................................................................................................................................................3011.00100000010000000000
.............................................................................................................................................................................................................................................ATGGAA--A-------------------------------------------------------T-------GAATAGACTG---GC-------------------------------------TGGC..........................................................................................2411.00100000001000000000
.........................................................................................................................................................................................................................AA-TG-------AGGAAA-AATGGAA--A-------------------------------------------------------T-------GAATAGACT.........................................................................................................................................2811.00100000000100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................CAAC---CTTAA--C-ACACCTTTA----------CAC....2211.00100010000000000000
.......................................................................................................................................................................................................TATCTG--TATGAAA-GAAA-TG-------AGGAAA-...........................................................................................................................................................................................................................2511.00100000000100000000
.................................................................................................................................................................................................................TGAAA-GAAA-TG-------AGGAAA-AA.........................................................................................................................................................................................................................1911.00100000000001000000
...........................................................................................................................................................................ACCACATATATACATACGCCGTTGT...................................................................................................................................................................................................................................................................2511.00100000001000000000
................................................................................................................................................................................................................ATGAAA-GAAA-TG-------AGGAAA-AATGGAA--A-------------------------------------------------------T-------GAA...............................................................................................................................................3011.00100000010000000000
...........................................................................................................................................................................................CGCCGTTGTATATATCTG--TATGAAA-GAA.............................................................................................................................................................................................................................................2811.00100000010000000000
.................................................................................................................................................................................................TGTATATATCTG--TATGAAA-GAAA-TG-------AGG...............................................................................................................................................................................................................................2811.00100000000010000000
.................................................................................................................................................................................TATATACATACGCCGTTGTATA................................................................................................................................................................................................................................................................2211.00100000000001000000
.........................................................................................................................................................................TAACCACATATATACATACGCCGTTGTA..................................................................................................................................................................................................................................................................2811.00100000001000000000
..............................................................................................................TCTCTGC--------A--A--C---A--------------ACACCACAT---GG----GTAAC..........................................................................................................................................................................................................................................................................................2711.00100010000000000000
.........................................................................................CTACAAGAAGCAACACAC--ATCTCTGC--------..........................................................................................................................................................................................................................................................................................................................................2611.00100000001000000000
..........................................................................................................................................................................................................................A-TG-------AGGAAA-AATGGAA--A-------------------------------------------------------T-------GA................................................................................................................................................2011.00100010000000000000
.........................................................................................................AC--ATCTCTGC--------A--A--C---A--------------ACACCACAT---GG----GT.............................................................................................................................................................................................................................................................................................2711.00100000001000000000
.....................................................................................................................................................................................................................................AGGAAA-AATGGAA--A-------------------------------------------------------T-------GAATAGAC..........................................................................................................................................2311.00100000000001000000
.....................................................................................................................................................................................................TATATCTG--TATGAAA-GAAA-TG-------AGGAAA-C..........................................................................................................................................................................................................................2811.00100000001000000000
..............................................................................................................TCTCTGC--------A--A--C---A--------------ACACCACAT---GG----GTAACCA........................................................................................................................................................................................................................................................................................2911.00100000001000000000
.....................................................................................................................................................................................................................................AGGAAA-AATGGAA--A-------------------------------------------------------T-------GAATAGACTG---G....................................................................................................................................2611.00100000000000010000
...............................................................................................................................................................................................................TATGAAA-GAAA-TG-------AGGAAA-AATGGAA--..................................................................................................................................................................................................................2611.00100000000100000000
........................................................................................................................................................................................................ATCTG--TATGAAA-GAAA-TG-------..................................................................................................................................................................................................................................1811.00100000010000000000
.........................................................................................................AC--ATCTCTGC--------A--A--C---A--------------ACACCACAT---GG----...............................................................................................................................................................................................................................................................................................2511.00100000010000000000
.........................................................................................................................................................................................TACGCCGTTGTATATATCTG--TATGAAA-G...............................................................................................................................................................................................................................................2811.00100000010000000000
..............................................................................................................................................................................................................................................TGGAA--A-------------------------------------------------------T-------GAATAGACTG---GC-------------------------------------TGGCT---------T...............................................................................2511.00100000000000010000
............................................................................................................................................................................................................................TG-------AGGAAA-AATGGAA--A-------------------------------------------------------T-------GAATAGACTG---GC-------------------------------------..............................................................................................2911.00100000001000000000
.......................................................................................................................................................................................................TATCTG--TATGAAA-GAAA-TG-------AGGA..............................................................................................................................................................................................................................2311.00100010000000000000
...........................................................................................................................................................................................................TG--TATGAAA-GAAA-TG-------AGGAAA-AATGGAA--A-------------------------------------------------------..........................................................................................................................................................2911.00100000001000000000
..............................................................................................................................................................................................................................................TGGAA--A-------------------------------------------------------T-------GAATAGACTG---GC-------------------------------------TGGCA---------A...............................................................................2511.00100000000000010000
.........................................................................................................................................................................................TACGCCGTTGTATATATCTG--TATGA...................................................................................................................................................................................................................................................2511.00100000000100000000
...................................................................................................................................................................................................TATATATCTG--TATGAAA-GAAA-TG-------AGGA..............................................................................................................................................................................................................................2711.00100000001000000000
..........................................................................................................C--ATCTCTGC--------A--A--C---A--------------ACACCACAT---GG----...............................................................................................................................................................................................................................................................................................2411.00100000010000000000
...........................................................................................ACAAGAAGCAACACA.............................................................................................................................................................................................................................................................................................................................................................1511.00100000000001000000
.....................................................................................................................................................................................................TATATCTG--TATGAAA-GAAA-TG-------AGGAAA-A..........................................................................................................................................................................................................................2811.00100000001000000000
.......................................................................................................................................................................................................TATCTG--TATGAAA-GAAA-TG-------AGGAA.............................................................................................................................................................................................................................2411.00100000000010000000
.....................................................................................................................................................................................................TATATCTG--TATGAAA-GAAA-TG-------AGGAAA-...........................................................................................................................................................................................................................2711.00100000000010000000
.......................................................................................TACTACAAGAAGCAACACAC--ATCTCTGC--------G--.......................................................................................................................................................................................................................................................................................................................................2911.00100000000001000000
...................................................................................................................................................................................TATACATACGCCGTTGTATATATCTG--TA......................................................................................................................................................................................................................................................2811.00100000010000000000
droSec2
ATCGATGC-----T---TT------GTTGT--------C--------AGT-TAATTAA-TGTTGA---TTATTTCATTGCAGCAT--TACTACAAGAAGCAACACAC--ATCTCTGC--------A--A-----------------------------T---GG----GTAACCACATATATACATACGCCGTTGTATATATCTG--TATGAAA-GAAA-TG-------AGGAAA-AATGGAA--A-------------------------------------------------------T-------GAATAGACTG---GC-------------------------------------TGGCT---------GGGAGCAA---------TAATAT------CAACATCAGCAAC---CTTAA--C-ACACCTTTA----------CACACTTSizeHit CountTotal NormTotalM054
Female-body
V113
Male-body
V114
Embryo
V115
Head
............................................................................................................................................................................................................G--TATGAAA-GAAA-TG-------AGGAAA-AATGGAA--A-------------------------------------------------------..........................................................................................................................................................2811.0011000
...................................................................................AT--TACTACAAGAAGCAAC................................................................................................................................................................................................................................................................................................................................................................1811.0010010
.........................................................................................................AC--ATCTCTGC--------A--A-----------------------------T---GG----GTAACCA........................................................................................................................................................................................................................................................................................2211.0011000
................................................................................................................................................................................................................ATGAAA-GAAA-TG-------AGGAAA-AATG.......................................................................................................................................................................................................................2211.0010100
..........................................................................................................................................................................AACCACATATATACATACGCCGTTGTAT.................................................................................................................................................................................................................................................................2811.0010001
........................................................................................................CAC--ATCTCTGC--------A--A-----------------------------T---GG----GT.............................................................................................................................................................................................................................................................................................1811.0010010
..............................................................................................................TCTCTGC--------A--A-----------------------------T---GG----GTAACCACATATATACA..............................................................................................................................................................................................................................................................................2911.0011000
.........................................................................................................................................................................................................................................................................................................................AGACTG---GC-------------------------------------TGGCT---------GGGAGC..........................................................................1911.0011000
........................................................................................................................................................................................ATACGCCGTTGTATATATCTG--TATG....................................................................................................................................................................................................................................................2511.0010010
..........................................................................................................................................................................................................................A-TG-------AGGAAA-AATGGAA--A-------------------------------------------------------T-------..................................................................................................................................................1811.0010010
droYak3
CGCT-------------CT------GGTGC--------C--------AGT-TAATTAA-AGTTAA------TTTCATTGCAGCAT--TACTACAAGAAGCAACACAC--ATCTCTAC--------A--A--C---A--------------ACACCGTCT---GG----GTAACCGCATATATA----CGCCGTTGTATATATCTG--TATGAAA-GAAA-TG-------AGGAAA-AAAGAAA--A-------------------------------------------------------T-------GAATAGACTG---GC-------------------------------------TGGCT---------GGGAGCAA---------TAATAT------CAACATCAGCTAC---CTTAA--C-ACACCTTTA----------CACACTTSizeHit CountTotal NormTotalM026
Head
M043
Female-body
M056
Embryo
V046
Embryo
V052
Head
V058
Head
V120
Male-body
SRR1275488
Male larvae
SRR1275486
Male prepupae
SRR1275484
Male prepupae
GSM1528802
follicle cells
..................................................................................................................................................................................................................................................A--A-------------------------------------------------------T-------GAATAGACTG---GC-------------------------------------TGGCT---------GGGA............................................................................2412.00200000020000
....................................................................................................................................................................................................ATATATCTG--TATGAAA-GAAA-TG-------AGGAAA-...........................................................................................................................................................................................................................2811.00100000010000
...............................................................................................................................................................................................GTTGTATATATCTG--TATGAAA-GA..............................................................................................................................................................................................................................................2311.00101000000000
.......................................................................................TACTACAAGAAGCAACACAC--ATC.......................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
.............................................................................................................ATCTCTAC--------A--A--C---A--------------ACACCGTCT---G....................................................................................................................................................................................................................................................................................................2211.00100000010000
..................................................................................................................TAC--------A--A--C---A--------------ACACCGTCT---GG----GTAACCGCA......................................................................................................................................................................................................................................................................................2711.00101000000000
..........................................................................................................................................................................................................................A-TG-------AGGAAA-AAAGAAA--A-------------------------------------------------------T-------GAATAGACC.........................................................................................................................................2711.00100100000000
.................................................................................................................CTAC--------A--A--C---A--------------ACACCGTCT---GG----GT.............................................................................................................................................................................................................................................................................................2111.00100000010000
..........................................................................................................................................................................................................................A-TG-------AGGAAA-AAAGAAA--A-------------------------------------------------------T-------GAA...............................................................................................................................................2111.00100000010000
.....................................................................................................................................................................................TA----CGCCGTTGTATATATCTG--T.......................................................................................................................................................................................................................................................2111.00100000010000
..........................................................................................................................................................................................................................................A-AAAGAAA--A-------------------------------------------------------T-------GAATAGACT.........................................................................................................................................1911.00101000000000
....................................................................................................AACACAC--ATCTCTAC--------A--A--C---A--------------ACACCGTCT---.....................................................................................................................................................................................................................................................................................................2811.00100000010000
.........................................................................................................................................................................................................................................................................................................................AGACTG---GC-------------------------------------TGGCT---------GGGAGC..........................................................................1911.00100100000000
.................................................................................................................CTAC--------A--A--C---A--------------ACACCGTCT---GG----GTAA...........................................................................................................................................................................................................................................................................................2311.00100000010000
.............................................................................................................................................................................................................................................................................................................................TG---GC-------------------------------------TGGCT---------GGGAGCAA---------TAATAT------CAACA..............................................2811.00101000000000
.................................................................................GCAT--TACTACAAGAAGCAACACAC--ATC.......................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
.......................................................................................................................................A--------------ACACCGTCT---GG----GTAACCGCATATA..................................................................................................................................................................................................................................................................................2511.00101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................CATCAGCTAC---CTTAA--C-ACACCTTTA----------CA.....2711.00100000010000
......................................................................................................................................................................................................................................................................................................................AATAGACTG---GC-------------------------------------TGGCT---------GGG.............................................................................1911.00100000010000
.................................................................................................................CTAC--------A--A--C---A--------------ACACCGTCT---GG----GTAACCGC.......................................................................................................................................................................................................................................................................................2711.00100000010000
..............................................................................................................TCTCTAC--------A--A--C---A--------------ACACCGTCT---GG----GT.............................................................................................................................................................................................................................................................................................2411.00100000010000
droEre2
CGCT-------------CT------GGTGC--------C--------AGT-TAATCAA-AGTTCA------TTTCATTGCAGCAT--TACTAAAAGAAGCAACACAC--ATCTCTAC--------A--A--C---A--------------ACACCATCT---GG----GTAACCGCATATATA----CGCCGTTGTATATATCTG--TATGAAA-GAAA-TA-------AGGAAA-AAAGTAA--A-------------------------------------------------------T-------GAAGAGACTG---GC-------------------------------------TGGCT---------GGGAGCAC---------TAATAT------CAACATCAGCTAC---CTTTA--C-ACACCTTTA----------CACACTTSizeHit CountTotal NormTotalM055
Female-body
M057
Embryo
V060
Head
V040
Embryo
V107
Male-body
V108
Head
GSM1528801
follicle cells
..................................................................................................GCAACACAC--ATCTCTAC--------A--A--C---A--------------ACA..............................................................................................................................................................................................................................................................................................................2411.0011000000
...................................................................................................................................C---A--------------ACACCATCT---GG----GTAACCGCATA....................................................................................................................................................................................................................................................................................2411.0011000000
..................................................................................................................................................................GG----GTAACCGCATATATA----CGCCGTT.....................................................................................................................................................................................................................................................................2411.0011000000
..................................................................................CAT--TACTAAAAGAAGCAACACAC--ATC.......................................................................................................................................................................................................................................................................................................................................................2611.0011000000
.............................................................................................................................................................................................................................................................................................................................................................................T---------GGGAGCAC---------TAATAT------CAACATCAGC.........................................2511.0011000000
........................................................................................................CAC--ATCTCTAC--------A--A--C---A--------------ACACCAT..........................................................................................................................................................................................................................................................................................................2211.0011000000
..................................................................................................................TAC--------A--A--C---A--------------ACACCATCT---GG----GTAACCGCATA....................................................................................................................................................................................................................................................................................2911.0011000000
...................................................................................................................AC--------A--A--C---A--------------ACACCATCT---GG----GT.............................................................................................................................................................................................................................................................................................1911.0010001000
...........................................................................................................................................................................................CGCCGTTGTATATATCTG--TAT.....................................................................................................................................................................................................................................................2111.0010000010
.............................................................................................................................................................................................................................................AAGTAA--A-------------------------------------------------------T-------GAAGAGACTG---.....................................................................................................................................1811.0011000000
.....................................................................................................................................................................................................................................................A-------------------------------------------------------T-------GAAGAGACTG---GC-------------------------------------TGGCT---------GGGAGCAC---------...............................................................2711.0010000100
.................................................................................................................................................................................................................TGAAA-GAAA-TA-------AGGAAA-AAAGTAA--A-------------------------------------------------------T-------GA................................................................................................................................................2811.0011000000
.............................................................................................................................................................CT---GG----GTAACCGCATATATA----CGC.........................................................................................................................................................................................................................................................................2211.0010100000
.......................................................................................TACTAAAAGAAGCAACACAC--ATCTC.....................................................................................................................................................................................................................................................................................................................................................2511.0011000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................CATCAGCTAC---CTTTA--C-ACAC......................2011.0010000010
.....................................................................................................................................................................................TA----CGCCGTTGTATATATCTG--TATGAAA-................................................................................................................................................................................................................................................2711.0011000000
.................................................................................................................CTAC--------A--A--C---A--------------ACACCATCT---GG----GT.............................................................................................................................................................................................................................................................................................2111.0010100000
.................................................................................................AGCAACACAC--ATCTCTAC--------A--A--C---A--------------.................................................................................................................................................................................................................................................................................................................2211.0010100000

Generated: 05/17/2015 at 10:46 PM