ID:

dps_570

 Coordinate:

2:15316319-15316528 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-13.9 -13.5 -13.5

Flybase annnotation

CDS [Dpse\GA18132-cds]; exon [Dpse\GA18132:1]; CDS [Dpse\GA18132-cds]; exon [Dpse\GA18132:2]; intron [Dpse\GA18132-in]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CCAGCAGCAGCAGCAACAGCAGCAGCCAGGAGGCACAGTCACAGCCACAGGTGAGCCGCTTGTGTGTTCGCCCTACAACTGAGCCGCTTTCTGTTATCACTGTGTGCATTGACCATTAACGCTCTTCCCTAACGAAGCTTTTATTTAAATTTTGTACGCATGCAAACACCGATTCGTTACGATCCGACCCGACCACCAAACCACCAACCGATCAACCCTCCTCCAACATCAACCGAACCAATCCGCACATCGAATTGCAGTGGATCACTCGATGCCAGTGCCCCTCGCGCCGGGAACGCAGCAACTGACG
************************************************************************************((..((.((((..((.((((((((...............((((......))))...............))))))))))..))))..))..)).....********************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 GSM343916
embryo
 GSM444067
head
.....AGCAGCAGCAACAGCAGCAGCCAGGA....................................................................................................................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0
......................................................................................................................................................................................................................................................................GATCACTCGATGCCAGTGCCC........................... 21 0 1 1.00 1 1 0 0
......GCAGCAGCAACAGCAGCAGCCAGGA....................................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0
...........................................................................................................................................................ACGCATGCAAACACCGATTCGTTACG................................................................................................................................. 26 0 1 1.00 1 1 0 0
....................................................................................CGCTTTCTGTTATCACTGTGTGC........................................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0
......................................TCACAGCCACAGGTGATGAGCT.......................................................................................................................................................................................................................................................... 22 3 1 1.00 1 0 1 0
.......................................................................................TTTCTGTTATCACTGTGTGCATTG....................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0
......................................TCACAGCCAGAGTTGATCCGCT.......................................................................................................................................................................................................................................................... 22 3 2 0.50 1 0 1 0
......................................TCACAGACACCGGTGATCCGCT.......................................................................................................................................................................................................................................................... 22 3 2 0.50 1 0 0 1
...GCAGCAGCAGCAACAGCAGCAGCCA.......................................................................................................................................................................................................................................................................................... 25 0 5 0.20 1 1 0 0
......GCAGCAGCAACAGCAGCAGCCA.......................................................................................................................................................................................................................................................................................... 22 0 7 0.14 1 1 0 0
...GCAGCAGCAGCAACAGCAGCAGCC........................................................................................................................................................................................................................................................................................... 24 0 8 0.13 1 0 1 0
......GCAGCAGCAACAGCAGCAGC............................................................................................................................................................................................................................................................................................ 20 0 20 0.10 2 2 0 0
.............................................................................................................................................TTTTTAAAATTTGGACGCAT..................................................................................................................................................... 20 3 20 0.05 1 1 0 0

Anti-sense strand reads

GGTCGTCGTCGTCGTTGTCGTCGTCGGTCCTCCGTGTCAGTGTCGGTGTCCACTCGGCGAACACACAAGCGGGATGTTGACTCGGCGAAAGACAATAGTGACACACGTAACTGGTAATTGCGAGAAGGGATTGCTTCGAAAATAAATTTAAAACATGCGTACGTTTGTGGCTAAGCAATGCTAGGCTGGGCTGGTGGTTTGGTGGTTGGCTAGTTGGGAGGAGGTTGTAGTTGGCTTGGTTAGGCGTGTAGCTTAACGTCACCTAGTGAGCTACGGTCACGGGGAGCGCGGCCCTTGCGTCGTTGACTGC
*********************************************************************************************************************************((..((.((((..((.((((((((...............((((......))))...............))))))))))..))))..))..)).....************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 V112
male body		 SRR902011
testis
 M022
male body		 GSM444067
head
 M059
embryo
 GSM343916
embryo
..............................................................................................................................................................................................CTGGTGGTTTGGTGGTTGG..................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0
....................TCGTCGGTCCTCCGTGTCAGT............................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0
............................................................................................................................................................................................................................................................................................TGCGCGGCCCTTGCGTCGTTG..... 21 1 1 1.00 1 0 1 0 0 0 0 0
........................................................................................................................................................................................................................................GGCTTGGTTAGGCGTGTAGC.......................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0
......................................................................................................................................................................................................................TGGGAGGCGATTGAAGTTGG............................................................................ 20 3 1 1.00 1 1 0 0 0 0 0 0
........................................................GGGAAAACACAAGCGGCATGT......................................................................................................................................................................................................................................... 21 3 2 0.50 1 0 0 0 0 1 0 0
................................................................................................................................................................................................................GCTAATTGGGTGCAGGTTG................................................................................... 19 3 9 0.33 3 1 2 0 0 0 0 0
..................................................................................................................................................................................................TGGTTAGGTGCGTGGCTAGTT............................................................................................... 21 3 4 0.25 1 1 0 0 0 0 0 0
............................................................................................................................................................................AAGCAATGCTGGGCTGCGC....................................................................................................................... 19 2 4 0.25 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................................GGTTGGTTAGGCTTGTAGC.......................................................... 19 2 4 0.25 1 0 0 1 0 0 0 0
.....................................CAGTGTCGGTGTCCGCTC............................................................................................................................................................................................................................................................... 18 1 5 0.20 1 0 0 0 0 0 1 0
.........................................................................................................................................................................................CTGGGCTGGTGGTATGAAG.......................................................................................................... 19 3 9 0.11 1 0 0 0 0 0 0 1
GGTCGTCGTCGTCGTTGTC................................................................................................................................................................................................................................................................................................... 19 0 20 0.10 2 1 1 0 0 0 0 0
..........................................................................................................................................................................................................TGGTGGGCCGGTTGGGAGG......................................................................................... 19 3 20 0.10 2 2 0 0 0 0 0 0
..........................................................................................................................................................................................................TGGTTAGCCGGTTGGGAGG......................................................................................... 19 3 20 0.10 2 0 2 0 0 0 0 0
GGTCGTCGTCGTCGTTGT.................................................................................................................................................................................................................................................................................................... 18 0 20 0.05 1 0 0 1 0 0 0 0
...........................................................................................................................................................................GAAGCAATGCTGGGCTGCG........................................................................................................................ 19 3 20 0.05 1 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 2:15316269-15316578 - dps_570 CCA-----------------GCAGCAG-CAGCA---AC---AGCAGCAGC---CA--GGAGGCACAGTCACAGCCACAGGTGAGCCGCTTGTGTGTTCGCCCTACAACTGAGCCGCTTTCTGTT-AT-CACTGTGTGC---ATTGACC-ATTAACGCTCTTCCCTAACGAAGCTTTTATTTAAATTTT--GTACGCATGCAAAC---ACCGATTCGTTACGATCCGACCCGACCACCAAACCACC------------AA---CCGA---TCAA-CCCT-------CC------TCCAACATCAACCGAACCAA---TCCGCAC----------------A-------------TC----------------------------------------------------------------------------------------------------------------------GA--ATTGCAGTGGATCACTCG---ATGCCAGTGCCCCTCGCGCCGGGAACGCAGCAACTGACG---
droPer2 scaffold_0:5097946-5098250 + CCA-----------------GCAGCAG-CAGCA---AC---AGCAGCAGC---CA--GGAGGCACAGTCACAGCCACAGGTGAGCCGCTTGTGTGTTCGCCCTACAACTGAGCCGCTTTCTGTT-AT-CACTGTGTGC---ATTGACC-ATTAACGCTCTTCCCTAACGAAGCTTTTATTTAAATTTT--GTACGCATGCAAAC---ACCGATTCGTTACGATCCG-----ACCACCAAACCGCC------------AA---CCGA---TCAA-CCCT-------CC------TCCAACATCAACCGAACCAA---TCCGCAC----------------A-------------TC----------------------------------------------------------------------------------------------------------------------GA--ATTGCAGTGGATCACTCG---ATGCCAGTGCCCCTCGCGCCGGGAACGCAGCAACTGACG---
droWil2 scf2_1100000004921:2765252-2765518 + dwi_3012 CCA--GTT-------------CGGC-ATCCGGTTCCGG---AGCCCAACC---GGGCGCCGGAGTTGGCCCAATTACAGGTGAGATGCTTGTGTGTTCGCCCTACAACTAAGCCGCTTTATGTT-CTACACTGTGTGACCAATTGATC-ATTAACACTCTTCCCTAACGAAGCTTTTATTTAAATTTT-CGCATGCATGCAACT------------------------------------------------------------------------CA-------AC------CTCGA------C---CTCGT----CCTCGA----------------A-------------CC----------------------------------------------------------------------------------------------------------------------GGATTCTGCAGTGAATCATGCG---ATGTCCGCACCCTTGGCACCAGGCACCCAACAGCTGACCGGA
droVir3 scaffold_13047:13040203-13040530 - dvi_16732 CCA-----------------GC------------------------------------CAGCCACAGTCACAGCCACAGGTGAGCCGCTTGTGTGTTCGCCCTACAACTGAGCCGCTTTCTGTT-AT-CACTGTGTGC---ATTGATC-ATTAACGCACTTCCCTAACGAAGCTTTTATTTAAATTTT--GTACGCATGCCAAC---C-----------------------------------------------------------------AATCAACAACCA-----------------------------CA---ACACCCCCAACAACAACAACAACGATCAACAACCAA------------CTGAACTGTACGGTTAACCGAACTATCTATCTATCAACCAATACCATCCATGCAACAATCA---------ATA-----CAC--ATGC------------G------GA--CTTTTAGTGGATCACTCAACCATGCCAGCGCCCCTCGCACCCGGCACGCAGCAGCTGACG---
droMoj3 scaffold_6540:28813306-28813651 + dmo_2103 CCA-----------------GC------------------------------------CAGCCACAGTCACAGCCACAGGTGAGCCGCTTGTGTGTTCGCCCTACAACTGAGCCGCTTTCTGTT-AT-CACTGTGTGC---ATTGATC-ATTAACGCACTTCCCTAACGAAGCTTTTATTTAAATTTT--GTACGCATGCAAAC---C-----------------------------------------------------------------AATCAACAACCA---------------------------ATCA---ACACC-CCAACAACAACAACAACGATCAACAACCAACAACCAACTGAACTGAACTGAACGGTTAATCGAACTGTCTATCAATCAACCAACCCCATCTATGCAACGATCA---------ATA-----CATCTATGCT---------ATG------GA--CTATTAGTGGATCACTCAACCATGCCAGCGCCCCTTGTTCCCGGCACGCAGCAGCTAACG---
droGri2 scaffold_15074:4073589-4073901 - CAG-----------------CCAGCAG-CAGCA---GC---AGCAGAACC---CAACG-----ACAGTCACAGCCACAGGTGAGCCGCTTGTGTGTTCGCCCTACAACTGAGCCGCTTTCTGTT-AT-CACTGTGTGC---ATTGATC-ATTAACGCACTTCCCTAACGAAGCTTTTATTTAAATTTT--GTACGCATGCCAAC------------------------------------------------CA----A---CC---------AATCAACAACC----------------------------------------------AACAACAACAACGATCAACAA-----------------------------------------TCTATCTAT-----------------GCAA-----AATCACCCCC--CCAAAA---------AATGTTCAAAATGTTCAAAACACACAACAGTGGATCACTCAACCATGCCAGCGCCCCTTGCACCGGGCACACATCAGCTGACG---
droAna3 scaffold_12911:2900463-2900746 + CCACGGCGGGGC---------TGGC-G-CCGGT---GG---AGGAGGTGG---TGGTGGAGGCGCCGTAACAGCCACAGGTGAGCCGCTTGTGTGTTCGCCCTACCAATGAGCCGCTTTCTGTTTATCCACTGTGTGT---ATTGATT-ATTAACGCTCTTCCCTAACGAAGCTTTTATTTAAATCTT--GTACGCATGCCACTCCCTC-----------------------------------C------------ATCATCTGA---TCGA-ATCT-------AC------ACCAAC-TCTAC---ACCAA---TCC----------------------------------CCG----------------------------------------------------------------------------------------------------------------------A-ATCTGCAGTGGATCACTCA---ATGCCCGCTCCTCTGGCGCCCGGAACGCAACAACTGACG---
droBip1 scf7180000396714:205303-205578 - CCACGGTGGGGC---------TGGC-G-CCGGT---GG---AGGAGGTGG---TGGTGGAGGCGCCGTAACAGCCACAGGTGAGCCGCTTGTGTGTTCGCCCTACCAATGAGCCGCTTTCTGTTTATCCACTGTGTGT---ATTGATT-ATTAACGCTCTTCCCTAACGAAGCTTTTATTTAAATCTT--GTACGCATGCCACTCCTTC-----------------------------------C------------AT---CTGA---TCGA-ATCT-------TC------ACCAA------C---TCCAA---TCC----------------------------------TTG----------------------------------------------------------------------------------------------------------------------A-ATCTGCAGTGGATCACTCA---ATGCCCGCTCCTCTGGCGCCCGGAACGCAACAACTGACG---
droKik1 scf7180000302706:2324155-2324442 - GGA-------GCAGGAGCTGGAGGA-C-CCGGA---GGATCAGCAGGAAGCGGTGGCGGAGGCCCCGTAACAGCCACAGGTGAGCCGCTTGTGTGTTCGCCATACCAATGAGCCGCTTTCTGTT-AT-CACTGTGTGC---ATTGATT-ATTAACGCTCTTCCCTAACGAAGCTTTTATTTAAATCTTGTGTACGCATGCTAAT---TC-----------------------------------CGTCATCC-A----A----TCATCC----AAT------------------CCAA------C---ACCAATTGACC----------------------------------GACAAC-------------------------------------------------------------------------------------------------------------------C-ACCTGCAGTGGATCACTCC---ATGCCCCCAACTCTGGCGCCCGGGACCCAGCAGCTGACG---
droFic1 scf7180000453930:681689-681965 + CAG-----------------GCGGC-G-GCGGT---GG---AGCAGGAGG---CGGCGGAGGAGCCGTCACAGCCACAGGTGAGCCGCTTGTGTGTTCGCCCTACCAATGAGCCGCTTTCTGTT-AT-CACTGTGTGC---ATCGATTAATTAACGCTCTTCCCTAACGAAGCTTTTGTTTAAATCTT--GTACGCATGCCAAC---TT-----------------------------------CTACAAACCGACCAA---CCT---------ATCA-------ACTTTAACTCCAT------C---TCCGT---ACC----------------------------------GCC----------------------------------------------------------------------------------------------------------------------A-ATCTGCAGTGGATCACTCA---ATGCCCGCACCTCTGGCGCCCGGGACGCAGCAGCTGACG---
droEle1 scf7180000491008:763642-763904 + CTG-----------------GTGGC-----GGC---GG---AGCAGGAGG---CGGCGGAGGCGCCGTCACAGCCACAGGTGAGCCGCTTGTGTGTTCGCCCTACCAATGAGCCGCTTTCTGTT-AT-CACTGTGTGC---ATCGATT-ATTAACGCTCTTCCCTAACGAAGCTTTTATTTAAATCTT--GTACGCATGCCCAC---AT-----------------------------------CGACAAACCATCCA----------------ATCA-------AC------GCCAA------C---TCCGT---ACC----------------------------------GCC----------------------------------------------------------------------------------------------------------------------A-ACCTGCAGTGGATCACTCA---ATGCCCGCTCCCCTGGCGCCCGGAACGCAGCAGCTGACG---
droRho1 scf7180000768020:24376-24638 + CTG-----------------GTGGA-----GGC---GG---AGCAGGAGG---CGGCGGAGGCGCCGTCACAGCCACAGGTGAGCCGCTTGTGTGTTCGCCCTACCAATGAGCCGCTTTCTGTT-AT-CACTGTGTGC---ATTGATT-ATTAACGCTCTTCCCTAACGAAGCTTTTATTTAAATCTT--GTACGCATGCCAAC---AT-----------------------------------CGACAAACCAACCA----------------ATCA-------AC------TCTAT------C---TCCGT---ACC----------------------------------GCC----------------------------------------------------------------------------------------------------------------------A-ACCTGCAGTGGATCACTCA---ATGCCCGCTCCTCTGGCGCCCGGGACGCAGCAGCTGACG---
droBia1 scf7180000302402:8966319-8966577 - CCG-----------------GGGGC-G-GGGGT---GG---AGCAGGAGGCGGCGGAGCAGGAGCCGTCACAGCCACAGGTGAGCCGCTTGTGTGTTCGCCCTACCAATGAGCCGCTTTCTGTT-AT-CACTGTGTGC---ATTGATT-AATAACGCTCTTCCCTAACGAAGCTTTTATTTAAATCTT--GTACGCATGCCAAT---TT-----------------------------------CGACAAACCGACCAA---C----------AATCA-------AC-------------------------------C----------------------------------CCT----------------------------------------------------------------------------------------------------------------------C-ACCTGCAGTGGATCACTCA---ATGCCCGCTCCATTGGCGCCCGGGACGCAGCAGCTGACG---
droTak1 scf7180000415653:146116-146373 + CTG--GTG-------------GAGCAG-CAGGA---GG---AGCAGGAGGCGGCGGTGGAGGAGCCGTCACAGCCACAGGTGAGCCGCTTGTGTGTTCGCCCTACCAATGAGCCGCTTTCTGTT-AT-CACTGTGTGC---ATTGATT-ATTAACGCTCTTCCCTAACGAAGCTTTTATTTAAATCTT--GTACGCATGCCAAT---TT-----------------------------------CGTCAAACCA----A---C----------AATCA-------AC------TTTAA------C---C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGCAGTGGATCACTCA---ATGCCCGCACCTCTGGCGCCCGGAACGCAGCAGCTGACG---
droEug1 scf7180000409804:2471468-2471736 - GAG--------------------GT-G-GTGGT---GG---AACCGGAGG---CGGCGGAGGCGCCGTCACAGCCACAGGTGAGCCGCTTGTGTGTTCGCCCTACCAATGAGCCGCTTTCTGTT-AT-CACTGTGTGC---ATTGATT-ATTAACGCTCTTCCCTAACGAAGCTTTTATTTAAATCTT--GTACGCATGCCAAC---TT-----------------------------------CAACAAACCATCCAACAAC----------AATCA-------AC------ACCAA------C---TCCAA---ACC----------------------------------GCC----------------------------------------------------------------------------------------------------------------------C-ATCTGCAGTGGATCACTCA---ATGCCCGCACCTCTGGCGCCAGGGACGCAGCAGCTGACG---
dm3 chr3R:16151825-16152088 - CTG-----------------GAGGC-G-TCGGT---GG---AGCAGGAGG---CGGCGGAGGCGCCGTCACAGCCACAGGTGAGCCGCTTGTGTGTTCGCCCTACCAATGAGCCGCTTTCTGTT-AT-CCATGTGTGC---ATTGATT-ATTAACGCTCTTCCCTAACGAAGCTTTTATTTAAATCTT--GTACGCATGCTAAC---TT-----------------------------------CAACAAATCATCCAA---C----------AAT------------------CCAA------C---TCCGT---ACC----------------------------------GTC----------------------------------------------------------------------------------------------------------------------A-ATCTGCAGTGGATCACTCA---ATGCCCGCTCCTCTGGCGCCCGGGACGCAGCAGCTGACC---
droSim2 3r:5152585-5152848 + dsi_18771 CTG-----------------GAGGC-G-CCGGT---GG---AGCAGGAGG---CGGCGGAGGCGCCGTCACAGCCACAGGTGAGCCGCTTGTGTGTTCGCCCTACCAATGAGCCGCTTTCTGTT-AT-CCATGTGTGC---ATTGATT-ATTAACGCTCTTCCCTAACGAAGCTTTTATTTAAATCTT--GTACGCATGCTTAC---TT-----------------------------------CAACAAACCATCCAA---C----------AAT------------------CCAA------C---TCCGT---ACC----------------------------------GCC----------------------------------------------------------------------------------------------------------------------A-ATCTGCAGTGGATCACTCA---ATGCCCGCTCCTCTGGCGCCCGGGACGCAGCAGCTGACC---
droSec2 scaffold_27:585784-586047 + CTG-----------------GAGGC-G-CCGGT---GG---AGCAGGAGG---CGGCGGAGGCGCCGTCACAGCCACAGGTGAGCCGCTTGTGTGTTCGCCCTACCAATGAGCCGCTTTCTGTT-AT-CCATGTGTGC---ATTGATT-ATTAACGCTCTTCCCTAACGAAGCTTTTATTTAAATCTT--GTACGCATGCTTAC---TT-----------------------------------CAACAAACCATCCAA---C----------AAT------------------CCAA------C---TCCGT---ACC----------------------------------GCC----------------------------------------------------------------------------------------------------------------------A-ATCTGCAGTGGATCACTCA---ATGCCCGCTCCTCTGGCGCCCGGGACGCAGCAGCTGACA---
droYak3 3R:4930045-4930301 - CCT----------------GGAGGA-G-CCGGT---GG---AGTAGGAGG---CGGCGGAGGCGCCGTCACAGCCACAGGTGAGCCGCTTGTGTGTTCGCCCTACCAATAAGCCGCTTTCTGTT-AT-CACTGTGTAC---ATTGATT-ATTAACGCTCTTCCCTAACGAAGCTTTTATTTAAATCTT--GTACGCATGCTAAC---TT-----------------------------------CGACAAACCATCCA---------------------------------------A------C---TCCGT---ACC----------------------------------GCC----------------------------------------------------------------------------------------------------------------------A-ACCTGCAGTGGATCACTCA---ATGCCCGCTCCTCTGGCACCCGGGACACAGCAGCTGACC---
droEre2 scaffold_4770:5523256-5523520 + CCT----------------GGAGGC-G-CCGGT---GG---AGCAGGAGG---CGGCGGAGGCGCCGTCACAGCCACAGGTGAGCCGCTTGTGTGTTCGCCCTACCAATGAGCCGCTTTCTGTT-AT-CACTGTGTGC---ATTGATT-ATTAACGCTCTTCCCTAACGAAGCTTTTATTTAAATCTT--GTACGCATGCTAAC---TT-----------------------------------CGACAAACCATCCAA---C----------AAT------------------CCAA------C---TCCGT---ACC----------------------------------GCC----------------------------------------------------------------------------------------------------------------------A-ACCTGCAGTGGATCACTCA---ATGCCCGCTCCTCTGGCACCCGGGACTCAACAGCTGACC---

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
CCA-----------------GCAGCAG-CAGCA---AC---AGCAGCAGC---CA--GGAGGCACAGTCACAGCCACAGGTGAGCCGCTTGTGTGTTCGCCCTACAACTGAGCCGCTTTCTGTT-AT-CACTGTGTGC---ATTGACC-ATTAACGCTCTTCCCTAACGAAGCTTTTATTTAAATTTT--GTACGCATGCAAAC---ACCGATTCGTTACGATCCGACCCGACCACCAAACCACC------------AA---CCGA---TCAA-CCCT-------CC------TCCAACATCAACCGAACCAA---TCCGCAC----------------A-------------TC----------------------------------------------------------------------------------------------------------------------GA--ATTGCAGTGGATCACTCG---ATGCCAGTGCCCCTCGCGCCGGGAACGCAGCAACTGACG---SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................AGCAG-CAGCA---AC---AGCAGCAGC---CA--GGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCACTCG---ATGCCAGTGCCC..............................2111.0010100000000
.......................GCAG-CAGCA---AC---AGCAGCAGC---CA--GGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
................................................................................................................................................................................................ACGCATGCAAAC---ACCGATTCGTTACG...............................................................................................................................................................................................................................................................................................................................2611.0010100000000
.................................................................................................................CGCTTTCTGTT-AT-CACTGTGTGC---...............................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100000
....................................................................................................................TTTCTGTT-AT-CACTGTGTGC---ATTG...........................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
....................GCAGCAG-CAGCA---AC---AGCAGCAGC---CA--...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2550.2010100000000
.......................GCAG-CAGCA---AC---AGCAGCAGC---CA--...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2270.1410100000000
....................GCAGCAG-CAGCA---AC---AGCAGCAGC---C......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2480.1310000100000
.......................GCAG-CAGCA---AC---AGCAGCAGC---.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.1020200000000
droPer2
CCA-----------------GCAGCAG-CAGCA---AC---AGCAGCAGC---CA--GGAGGCACAGTCACAGCCACAGGTGAGCCGCTTGTGTGTTCGCCCTACAACTGAGCCGCTTTCTGTT-AT-CACTGTGTGC---ATTGACC-ATTAACGCTCTTCCCTAACGAAGCTTTTATTTAAATTTT--GTACGCATGCAAAC---ACCGATTCGTTACGATCCG-----ACCACCAAACCGCC------------AA---CCGA---TCAA-CCCT-------CC------TCCAACATCAACCGAACCAA---TCCGCAC----------------A-------------TC----------------------------------------------------------------------------------------------------------------------GA--ATTGCAGTGGATCACTCG---ATGCCAGTGCCCCTCGCGCCGGGAACGCAGCAACTGACG---SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
CCA--GTT-------------CGGC-ATCCGGTTCCGG---AGCCCAACC---GGGCGCCGGAGTTGGCCCAATTACAGGTGAGATGCTTGTGTGTTCGCCCTACAACTAAGCCGCTTTATGTT-CTACACTGTGTGACCAATTGATC-ATTAACACTCTTCCCTAACGAAGCTTTTATTTAAATTTT-CGCATGCATGCAACT------------------------------------------------------------------------CA-------AC------CTCGA------C---CTCGT----CCTCGA----------------A-------------CC----------------------------------------------------------------------------------------------------------------------GGATTCTGCAGTGAATCATGCG---ATGTCCGCACCCTTGGCACCAGGCACCCAACAGCTGACCGGASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.............................................................................................................................................................................................................................................................................................................................CCTCGA----------------A-------------CC----------------------------------------------------------------------------------------------------------------------GGATTCTGCAG........................................................2011.00110000
.CA--GTT-------------CGGC-ATCCGGTTCCGG---AGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000
..........................................GCCCAACC---GGGCGCCGGAGTTGGCCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000
...................................................................................GATGCTTGTGTGTTCGCCCTACAACTAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000
droVir3
CCA-----------------GC------------------------------------CAGCCACAGTCACAGCCACAGGTGAGCCGCTTGTGTGTTCGCCCTACAACTGAGCCGCTTTCTGTT-AT-CACTGTGTGC---ATTGATC-ATTAACGCACTTCCCTAACGAAGCTTTTATTTAAATTTT--GTACGCATGCCAAC---C-----------------------------------------------------------------AATCAACAACCA-----------------------------CA---ACACCCCCAACAACAACAACAACGATCAACAACCAA------------CTGAACTGTACGGTTAACCGAACTATCTATCTATCAACCAATACCATCCATGCAACAATCA---------ATA-----CAC--ATGC------------G------GA--CTTTTAGTGGATCACTCAACCATGCCAGCGCCCCTCGCACCCGGCACGCAGCAGCTGACG---SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................................................................................................CTACAACTGAGCCGCTTTCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002001000000000000000000000100000000000000000000000000000000000000
...............................................................................GTGAGCCGCTTGTGTGTTCGCCCTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.002000000000000000000000000010010000000000000000000000000000000000
....................................................................................................................TTTCTGTT-AT-CACTGTGTGC---A..............................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................CTTTCTGTT-AT-CACTGTGTGC---...............................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000100000000000000000000000000000000000000
...............................................................................GTGAGCCGCTTGTGTGTTCGCCCTACAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001000000000000000000000000000000000001000000000000000000000000000
...............................................................................GTGAGCCGCTTGTGTGTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000100000000000000000000000000000
..................................................................................AGCCGCTTGTGTGTTCGCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000100000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATCA---------ATA-----CAC--ATGC------------G------GA--C..............................................................2111.001000000000000000000000000000000100000000000000000000000000000000
..................................................................................................................................................TC-ATTAACGCACTTCCCTAAC....................................................................................................................................................................................................................................................................................................................................................................................2111.001000100000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTCAACCATGCCAGCGCCC..............................2111.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................CTATCTATCAACCAATACCAT..............................................................................................................................2111.001000000000000000000010000000000000000000000000000000000000000000
............................................................................................GTGTTCGCCCTACAACTGAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000100000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----CAC--ATGC------------G------GA--CTTTTAGTGG.....................................................2111.001000010000000000000000000000000000000000000000000000000000000000
...............................................................................GTGAGCCGCTTGTGTGTTCGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000010000000000000000000000000000000000000000000000000000000
.........................................................................................TGTGTGTTCGCCCTACAACTGAGCCGC........................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000010
.................................................................................................................................................................................................................................................................................................................................................ACAACGATCAACAACCAA------------CTGAACT......................................................................................................................................................................2511.001010000000000000000000000000000000000000000000000000000000000000
..........................................................................................................ACTGAGCCGCTTTCTGTT-AT-CACTG.......................................................................................................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................TATTTAAATTTT--GTACGCATGCCA..................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000001000000000000000000000000000000
.................................................................................................CGCCCTACAACTGAGCCGC........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000001000000000000000000000000000000000000000000000
.............................................................................................................................................ATTGATC-ATTAACGCACTTCC.........................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000001000000000000000000000000
.............................................................................................TGTTCGCCCTACAACTGAGCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCACCCGGCACGCAGCAGC........2111.001000000000000000000000000001000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................ATCA---------ATA-----CAC--ATGC------------G------GA--CTTTTAGT.......................................................2511.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAGTGGATCACTCAACCATG.......................................2311.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................CGCTTTCTGTT-AT-CACTGTGT....................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCACTCAACCATGCCAGCG.................................2111.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCTCGCACCCGGCACGCAG............2111.001000000000000000000000000010000000000000000000000000000000000000
................................................................................TGAGCCGCTTGTGTGTTCGCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................ACAGCCACAGGTGAGCCGCTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000100000000000000000000000000000000000000000000000000000
......................................................................................................................................................TTAACGCACTTCCCTAACGA..................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000010000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTCAACCATGCCAGCGCCCCTCGC.........................2611.001000000000000000000000000000010000000000000000000000000000000000
........................................................................................................................................................AACGCACTTCCCTAACGAAGC...............................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000001000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................A---------ATA-----CAC--ATGC------------G------GA--CTTTTAG........................................................2111.001000000000000000000000010000000000000000000000000000000000000000
.........................................................................................TGTGTGTTCGCCCTACAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCTCGCACCCGGCAC................1711.001000000000000000000000000000000000000000000000000000100000000000
............................................................................................................................................................................................................................................................................................................................................................CAACCAA------------CTGAACTGTACGGT...............................................................................................................................................................2111.001100000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAC--ATGC------------G------GA--CTTTTAGTGGA....................................................2111.001000000000000000000000000000000100000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................AACAATCA---------ATA-----CAC--ATGC------------G------G..................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................AACTGAGCCGCTTTCTGTT-AT-............................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000001000000000000000000000000000000000000
.............................................................CCACAGTCACAGCCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................18110.091000000000000000000000000000000000000000000000000000010000000000
droMoj3
CCA-----------------GC------------------------------------CAGCCACAGTCACAGCCACAGGTGAGCCGCTTGTGTGTTCGCCCTACAACTGAGCCGCTTTCTGTT-AT-CACTGTGTGC---ATTGATC-ATTAACGCACTTCCCTAACGAAGCTTTTATTTAAATTTT--GTACGCATGCAAAC---C-----------------------------------------------------------------AATCAACAACCA---------------------------ATCA---ACACC-CCAACAACAACAACAACGATCAACAACCAACAACCAACTGAACTGAACTGAACGGTTAATCGAACTGTCTATCAATCAACCAACCCCATCTATGCAACGATCA---------ATA-----CATCTATGCT---------ATG------GA--CTATTAGTGGATCACTCAACCATGCCAGCGCCCCTTGTTCCCGGCACGCAGCAGCTAACG---SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........................................................................................TGTGTGTTCGCCCTACAACTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
...........................................................................................................CTGAGCCGCTTTCTGTT-AT-CACTGTGTG...................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
............................................................................................................TGAGCCGCTTTCTGTT-AT-CACTGTGTGC---A..............................................................................................................................................................................................................................................................................................................................................................................................................2911.001100000
.........................................................................................................................................................................................................................................................................................................................................................CAACAACCAACAACCAACTGAACTGA.........................................................................................................................................................................2611.001100000
....................................................................................................CCTACAACTGAGCCGCTTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
..........................................................................................................ACTGAGCCGCTTTCTGTT-AT-CACT........................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000010
............................................................................................................TGAGCCGCTTTCTGTT-AT-CACTGTGT....................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
.....................................................................................................................................................................................................................................................................................................................................................CGATCAACAACCAACAACCAACTGAAC............................................................................................................................................................................2711.001100000
......................................................................................................................................................................................................................................................................................................................................CAACAACAACAACAACGATC..................................................................................................................................................................................................20100.101100000
droGri2
CAG-----------------CCAGCAG-CAGCA---GC---AGCAGAACC---CAACG-----ACAGTCACAGCCACAGGTGAGCCGCTTGTGTGTTCGCCCTACAACTGAGCCGCTTTCTGTT-AT-CACTGTGTGC---ATTGATC-ATTAACGCACTTCCCTAACGAAGCTTTTATTTAAATTTT--GTACGCATGCCAAC------------------------------------------------CA----A---CC---------AATCAACAACC----------------------------------------------AACAACAACAACGATCAACAA-----------------------------------------TCTATCTAT-----------------GCAA-----AATCACCCCC--CCAAAA---------AATGTTCAAAATGTTCAAAACACACAACAGTGGATCACTCAACCATGCCAGCGCCCCTTGCACCGGGCACACATCAGCTGACG---SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
....................................................................................CCGCTTGTGTGTTCGCCCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110
.............................................GAACC---CAACG-----ACAGTCAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110
........................................................................................................................................................................................TTTT--GTACGCATGCCAAC------------------------------------------------CA----A---CC---------AAT........................................................................................................................................................................................................................................................................2611.00110
droAna3
CCACGGCGGGGC---------TGGC-G-CCGGT---GG---AGGAGGTGG---TGGTGGAGGCGCCGTAACAGCCACAGGTGAGCCGCTTGTGTGTTCGCCCTACCAATGAGCCGCTTTCTGTTTATCCACTGTGTGT---ATTGATT-ATTAACGCTCTTCCCTAACGAAGCTTTTATTTAAATCTT--GTACGCATGCCACTCCCTC-----------------------------------C------------ATCATCTGA---TCGA-ATCT-------AC------ACCAAC-TCTAC---ACCAA---TCC----------------------------------CCG----------------------------------------------------------------------------------------------------------------------A-ATCTGCAGTGGATCACTCA---ATGCCCGCTCCTCTGGCGCCCGGAACGCAACAACTGACG---SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......................GGC-G-CCGGT---GG---AGGAGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002010010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATCACTCA---ATGCCCGCT.................................2111.001100000
......................GGC-G-CCGGT---GG---AGGAGGTGG---TGGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCGGAACGCAACAACTGAC....2111.001000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCA---ATGCCCGCTCCTCTGGCGCCCGGAA.................2811.001010000
..............................GGT---GG---AGGAGGTGG---TGGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1830.331100000
..............................................................................................GTTCGCCCTACCAATGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................1830.331000100
....................................GG---AGGAGGTGG---TGGTGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1860.171100000
droBip1
CCACGGTGGGGC---------TGGC-G-CCGGT---GG---AGGAGGTGG---TGGTGGAGGCGCCGTAACAGCCACAGGTGAGCCGCTTGTGTGTTCGCCCTACCAATGAGCCGCTTTCTGTTTATCCACTGTGTGT---ATTGATT-ATTAACGCTCTTCCCTAACGAAGCTTTTATTTAAATCTT--GTACGCATGCCACTCCTTC-----------------------------------C------------AT---CTGA---TCGA-ATCT-------TC------ACCAA------C---TCCAA---TCC----------------------------------TTG----------------------------------------------------------------------------------------------------------------------A-ATCTGCAGTGGATCACTCA---ATGCCCGCTCCTCTGGCGCCCGGAACGCAACAACTGACG---SizeHit CountTotal NormTotal
No Reads
droKik1
GGA-------GCAGGAGCTGGAGGA-C-CCGGA---GGATCAGCAGGAAGCGGTGGCGGAGGCCCCGTAACAGCCACAGGTGAGCCGCTTGTGTGTTCGCCATACCAATGAGCCGCTTTCTGTT-AT-CACTGTGTGC---ATTGATT-ATTAACGCTCTTCCCTAACGAAGCTTTTATTTAAATCTTGTGTACGCATGCTAAT---TC-----------------------------------CGTCATCC-A----A----TCATCC----AAT------------------CCAA------C---ACCAATTGACC----------------------------------GACAAC-------------------------------------------------------------------------------------------------------------------C-ACCTGCAGTGGATCACTCC---ATGCCCCCAACTCTGGCGCCCGGGACCCAGCAGCTGACG---SizeHit CountTotal NormTotal
No Reads
droFic1
CAG-----------------GCGGC-G-GCGGT---GG---AGCAGGAGG---CGGCGGAGGAGCCGTCACAGCCACAGGTGAGCCGCTTGTGTGTTCGCCCTACCAATGAGCCGCTTTCTGTT-AT-CACTGTGTGC---ATCGATTAATTAACGCTCTTCCCTAACGAAGCTTTTGTTTAAATCTT--GTACGCATGCCAAC---TT-----------------------------------CTACAAACCGACCAA---CCT---------ATCA-------ACTTTAACTCCAT------C---TCCGT---ACC----------------------------------GCC----------------------------------------------------------------------------------------------------------------------A-ATCTGCAGTGGATCACTCA---ATGCCCGCACCTCTGGCGCCCGGGACGCAGCAGCTGACG---SizeHit CountTotal NormTotal
No Reads
droEle1
CTG-----------------GTGGC-----GGC---GG---AGCAGGAGG---CGGCGGAGGCGCCGTCACAGCCACAGGTGAGCCGCTTGTGTGTTCGCCCTACCAATGAGCCGCTTTCTGTT-AT-CACTGTGTGC---ATCGATT-ATTAACGCTCTTCCCTAACGAAGCTTTTATTTAAATCTT--GTACGCATGCCCAC---AT-----------------------------------CGACAAACCATCCA----------------ATCA-------AC------GCCAA------C---TCCGT---ACC----------------------------------GCC----------------------------------------------------------------------------------------------------------------------A-ACCTGCAGTGGATCACTCA---ATGCCCGCTCCCCTGGCGCCCGGAACGCAGCAGCTGACG---SizeHit CountTotal NormTotal
No Reads
droRho1
CTG-----------------GTGGA-----GGC---GG---AGCAGGAGG---CGGCGGAGGCGCCGTCACAGCCACAGGTGAGCCGCTTGTGTGTTCGCCCTACCAATGAGCCGCTTTCTGTT-AT-CACTGTGTGC---ATTGATT-ATTAACGCTCTTCCCTAACGAAGCTTTTATTTAAATCTT--GTACGCATGCCAAC---AT-----------------------------------CGACAAACCAACCA----------------ATCA-------AC------TCTAT------C---TCCGT---ACC----------------------------------GCC----------------------------------------------------------------------------------------------------------------------A-ACCTGCAGTGGATCACTCA---ATGCCCGCTCCTCTGGCGCCCGGGACGCAGCAGCTGACG---SizeHit CountTotal NormTotal
No Reads
droBia1
CCG-----------------GGGGC-G-GGGGT---GG---AGCAGGAGGCGGCGGAGCAGGAGCCGTCACAGCCACAGGTGAGCCGCTTGTGTGTTCGCCCTACCAATGAGCCGCTTTCTGTT-AT-CACTGTGTGC---ATTGATT-AATAACGCTCTTCCCTAACGAAGCTTTTATTTAAATCTT--GTACGCATGCCAAT---TT-----------------------------------CGACAAACCGACCAA---C----------AATCA-------AC-------------------------------C----------------------------------CCT----------------------------------------------------------------------------------------------------------------------C-ACCTGCAGTGGATCACTCA---ATGCCCGCTCCATTGGCGCCCGGGACGCAGCAGCTGACG---SizeHit CountTotal NormTotal
No Reads
droTak1
CTG--GTG-------------GAGCAG-CAGGA---GG---AGCAGGAGGCGGCGGTGGAGGAGCCGTCACAGCCACAGGTGAGCCGCTTGTGTGTTCGCCCTACCAATGAGCCGCTTTCTGTT-AT-CACTGTGTGC---ATTGATT-ATTAACGCTCTTCCCTAACGAAGCTTTTATTTAAATCTT--GTACGCATGCCAAT---TT-----------------------------------CGTCAAACCA----A---C----------AATCA-------AC------TTTAA------C---C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGCAGTGGATCACTCA---ATGCCCGCACCTCTGGCGCCCGGAACGCAGCAGCTGACG---SizeHit CountTotal NormTotal
No Reads
droEug1
GAG--------------------GT-G-GTGGT---GG---AACCGGAGG---CGGCGGAGGCGCCGTCACAGCCACAGGTGAGCCGCTTGTGTGTTCGCCCTACCAATGAGCCGCTTTCTGTT-AT-CACTGTGTGC---ATTGATT-ATTAACGCTCTTCCCTAACGAAGCTTTTATTTAAATCTT--GTACGCATGCCAAC---TT-----------------------------------CAACAAACCATCCAACAAC----------AATCA-------AC------ACCAA------C---TCCAA---ACC----------------------------------GCC----------------------------------------------------------------------------------------------------------------------C-ATCTGCAGTGGATCACTCA---ATGCCCGCACCTCTGGCGCCAGGGACGCAGCAGCTGACG---SizeHit CountTotal NormTotal
No Reads
dm3
CTG-----------------GAGGC-G-TCGGT---GG---AGCAGGAGG---CGGCGGAGGCGCCGTCACAGCCACAGGTGAGCCGCTTGTGTGTTCGCCCTACCAATGAGCCGCTTTCTGTT-AT-CCATGTGTGC---ATTGATT-ATTAACGCTCTTCCCTAACGAAGCTTTTATTTAAATCTT--GTACGCATGCTAAC---TT-----------------------------------CAACAAATCATCCAA---C----------AAT------------------CCAA------C---TCCGT---ACC----------------------------------GTC----------------------------------------------------------------------------------------------------------------------A-ATCTGCAGTGGATCACTCA---ATGCCCGCTCCTCTGGCGCCCGGGACGCAGCAGCTGACC---SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................................................................................................................................................................................................................................................................................................................ACC----------------------------------GTC----------------------------------------------------------------------------------------------------------------------A-ATCTGCAGTGGATC..................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................AA---C----------AAT------------------CCAA------C---TCCGT---ACC----------------------------------GT.........................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................GGCGGAGGCGCCGTCACAGCCACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................GTGAGCCGCTTGTGTGTTCGCCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................T---ACC----------------------------------GTC----------------------------------------------------------------------------------------------------------------------A-ATCTGCAGTGGATCACT...............................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
CTG-----------------GAGGC-G-TCGGT---GG---AGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................GTGAGCCGCTTGTGTGTTCGCCCTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................GT---ACC----------------------------------GTC----------------------------------------------------------------------------------------------------------------------A-ATCTGCAGTGGA....................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCCGGGACGCAGCAGC........1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................T---ACC----------------------------------GTC----------------------------------------------------------------------------------------------------------------------A-ATCTGCAGTGGATCACTCA---A.........................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................AATGAGCCGCTTTCTGTT-AT-C...........................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................C-G-TCGGT---GG---AGCAGGAGG---C......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000
................................................................................................................................................................................................................................................................................................................C---TCCGT---ACC----------------------------------GTC----------------------------------------------------------------------------------------------------------------------A-ATCTGCAG........................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................CGT---ACC----------------------------------GTC----------------------------------------------------------------------------------------------------------------------A-ATCTGCAGTGG.....................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGGCGCCCGGGACGCAGCAGCT.......2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
...........................................................................................................................................................................................................................................................TCATCCAA---C----------AAT------------------CCAA------C---TCCGT---ACC----------------------------------G..........................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................AGGC-G-TCGGT---GG---AGCAGGAGG---CGGCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................TTGTGTGTTCGCCCTACCAATGAGCCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
.......................................................................................................................................................................................................................................................................................................CAA------C---TCCGT---ACC----------------------------------GTC----------------------------------------------------------------------------------------------------------------------A-ATCTG...........................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................T---ACC----------------------------------GTC----------------------------------------------------------------------------------------------------------------------A-ATCTGCAGTGGAT...................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................TAACGCTCTTCCCTAACGAAG................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................AA---C----------AAT------------------CCAA------C---TCCGT---ACC----------------------------------GTC----------------------------------------------------------------------------------------------------------------------A-ATC.............................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................A---C----------AAT------------------CCAA------C---TCCGT---ACC----------------------------------GTC----------------------------------------------------------------------------------------------------------------------A-ATC.............................................................2511.0010000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................T------------------CCAA------C---TCCGT---ACC----------------------------------GTC----------------------------------------------------------------------------------------------------------------------A-ATCTGC..........................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................GCTTTCTGTT-AT-CCATGTGTG...................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...........................................................................................................................................................................................................................................................TCATCCAA---C----------AAT------------------CCAA------C---TCCGT---ACC----------------------------------GTC----------------------------------------------------------------------------------------------------------------------..................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---ATGCCCGCTCCTCTGGCGC.......................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...............................................................................GTGAGCCGCTTGTGTGTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
......................................................................................GCTTGTGTGTTCGCCCTACCAATGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................AGGCGCCGTCACAGCCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................T-----------------------------------CAACAAATCATCCAA---C----------AAT------------------CCAA------C---........................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................AA------C---TCCGT---ACC----------------------------------GTC----------------------------------------------------------------------------------------------------------------------A-ATCTGC..........................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................GTGAGCCGCTTGTGTGTTCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................C-G-TCGGT---GG---AGCAGGAGG---CGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
............................................................................CAGGTGAGCCGCTTGTGTGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................TTTTATTTAAATCTT--GTACGC........................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................GGAGGCGCCGTCACAGCCACAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................CCCTACCAATGAGCCGCTTTC....................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.........................................................................................TGTGTGTTCGCCCTACCAATGAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
................................................................................TGAGCCGCTTGTGTGTTCGCCCTACC..................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................TTAAATCTT--GTACGCATGCTAAC---TT-----------------------------------........................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................CCAA---C----------AAT------------------CCAA------C---TCCGT---ACC----------------------------------...........................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCTCCTCTGGCGCCCGGGACGCA.............2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................TCCGT---ACC----------------------------------GTC----------------------------------------------------------------------------------------------------------------------A-ATCTGCAGTGG.....................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................CTTTCTGTT-AT-CCATGTGTGC---...............................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
......................................................................................................................................................................................................................................................ACAAATCATCCAA---C----------AAT------------------CCAA------C---TCCGT---................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---ATGCCCGCTCCTCTGGCGCC......................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................GC-G-TCGGT---GG---AGCAGGAGG---CG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................TCACAGCCACAGGTGAGCCGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.....................AGGC-G-TCGGT---GG---AGCAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................TCCGT---ACC----------------------------------GTC----------------------------------------------------------------------------------------------------------------------A-ATCTGCAGTGGATC..................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................GTT-AT-CCATGTGTGC---ATTGA..........................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
...................................................................................................................................TGTGTGC---ATTGATT-ATTAACG................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................ACC----------------------------------GTC----------------------------------------------------------------------------------------------------------------------A-ATCTGCAGTGGATCACTC..............................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................AT------------------CCAA------C---TCCGT---ACC----------------------------------GTC----------------------------------------------------------------------------------------------------------------------A-ATCTG...........................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
...................................................................................................................................TGTGTGC---ATTGATT-ATTAAC.................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
.........................................................GGAGGCGCCGTCACAGCCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................GGCGGAGGCGCCGTCACAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCGCTCCTCTGGCGCCCGGGACGCA.............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCTCTGGCGCCCGGGACGCA.............2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................GTGTTCGCCCTACCAATGAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCA---ATGCCCGCTCCTCTGGC.........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................CCAA---C----------AAT------------------CCAA------C---TCCGT---ACC----------------------------------GTC----------------------------------------------------------------------------------------------------------------------A-ATC.............................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCGCCCGGGACGCAGCAGCTG......2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGACGCAGCAGCTGACC---1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCA---ATGCCCGCTCCTCTGG..........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................AAT------------------CCAA------C---TCCGT---ACC----------------------------------GTC----------------------------------------------------------------------------------------------------------------------A-ATCTGCAG........................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---ATGCCCGCTCCTCTGGCGC.......................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCTCCTCTGGCGCCCGGGA.................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTCCTCTGGCGCCCGGGACGC..............2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCA---ATGCCCGCTCCTCTGGCGCC......................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................AGGC-G-TCGGT---GG---AGCAGGAGG---C......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................AGGC-G-TCGGT---GG---AGCAGGAGG---.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................TCCAA---C----------AAT------------------CCAA------C---TCCGT---ACC----------------------------------GTC----------------------------------------------------------------------------------------------------------------------..................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................C----------------------------------------------------------------------------------------------------------------------A-ATCTGCAGTGGATCACTCA---..........................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................AACGCTCTTCCCTAACGAAGCT..............................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
droSim2
CTG-----------------GAGGC-G-CCGGT---GG---AGCAGGAGG---CGGCGGAGGCGCCGTCACAGCCACAGGTGAGCCGCTTGTGTGTTCGCCCTACCAATGAGCCGCTTTCTGTT-AT-CCATGTGTGC---ATTGATT-ATTAACGCTCTTCCCTAACGAAGCTTTTATTTAAATCTT--GTACGCATGCTTAC---TT-----------------------------------CAACAAACCATCCAA---C----------AAT------------------CCAA------C---TCCGT---ACC----------------------------------GCC----------------------------------------------------------------------------------------------------------------------A-ATCTGCAGTGGATCACTCA---ATGCCCGCTCCTCTGGCGCCCGGGACGCAGCAGCTGACC---SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.............................................GGAGG---CGGCGGAGGCGCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000100000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGGCGCCCGGGACGCAGCAGCTGAC....2711.00100000000000010000
.........................................................................................................................................................................................................................................................................................................A------C---TCCGT---ACC----------------------------------GCC----------------------------------------------------------------------------------------------------------------------A-ATCTGCAGTGGAT...................................................2711.00100010000000000000
.......................................................................................CTTGTGTGTTCGCCCTAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
..........................G-CCGGT---GG---AGCAGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1520.50100000000001000000
......................GGC-G-CCGGT---GG---AGCAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1670.14100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGACGCAGCAGCTGAT....18200.05100000000001000000
droSec2
CTG-----------------GAGGC-G-CCGGT---GG---AGCAGGAGG---CGGCGGAGGCGCCGTCACAGCCACAGGTGAGCCGCTTGTGTGTTCGCCCTACCAATGAGCCGCTTTCTGTT-AT-CCATGTGTGC---ATTGATT-ATTAACGCTCTTCCCTAACGAAGCTTTTATTTAAATCTT--GTACGCATGCTTAC---TT-----------------------------------CAACAAACCATCCAA---C----------AAT------------------CCAA------C---TCCGT---ACC----------------------------------GCC----------------------------------------------------------------------------------------------------------------------A-ATCTGCAGTGGATCACTCA---ATGCCCGCTCCTCTGGCGCCCGGGACGCAGCAGCTGACA---SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........................................GCAGGAGG---CGGCGGAGGCGCCGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
........................C-G-CCGGT---GG---AGCAGGAGG---C......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
droYak3
CCT----------------GGAGGA-G-CCGGT---GG---AGTAGGAGG---CGGCGGAGGCGCCGTCACAGCCACAGGTGAGCCGCTTGTGTGTTCGCCCTACCAATAAGCCGCTTTCTGTT-AT-CACTGTGTAC---ATTGATT-ATTAACGCTCTTCCCTAACGAAGCTTTTATTTAAATCTT--GTACGCATGCTAAC---TT-----------------------------------CGACAAACCATCCA---------------------------------------A------C---TCCGT---ACC----------------------------------GCC----------------------------------------------------------------------------------------------------------------------A-ACCTGCAGTGGATCACTCA---ATGCCCGCTCCTCTGGCACCCGGGACACAGCAGCTGACC---SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCACTCA---ATGCCCGCTCC...............................2111.00101000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTCA---ATGCCCGCTCCTCTG...........................2111.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCACTCA---ATGCCCGCTCCTCTG...........................2411.00101000000000
..........................G-CCGGT---GG---AGTAGGAGG---CGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
droEre2
CCT----------------GGAGGC-G-CCGGT---GG---AGCAGGAGG---CGGCGGAGGCGCCGTCACAGCCACAGGTGAGCCGCTTGTGTGTTCGCCCTACCAATGAGCCGCTTTCTGTT-AT-CACTGTGTGC---ATTGATT-ATTAACGCTCTTCCCTAACGAAGCTTTTATTTAAATCTT--GTACGCATGCTAAC---TT-----------------------------------CGACAAACCATCCAA---C----------AAT------------------CCAA------C---TCCGT---ACC----------------------------------GCC----------------------------------------------------------------------------------------------------------------------A-ACCTGCAGTGGATCACTCA---ATGCCCGCTCCTCTGGCACCCGGGACTCAACAGCTGACC---SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/17/2015 at 10:42 PM