ID:

dps_563

 Coordinate:

2:14967517-14967667 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [Dpse\GA15962:8]; CDS [Dpse\GA15962-cds]; exon [Dpse\GA15962:7]; CDS [Dpse\GA15962-cds]; intron [Dpse\GA15962-in]; intron [Dpse\GA15962-in]; intron [Dpse\GA15962-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GGCCACCAATTCGTCCTCCTCTACGGCGTCGGCCCACTCCGGCGAAGAAGGTAAGCTAGTGCTCCAGCCGCCGGCAGACAGTTGCCATTTCGCTTGCCCACCCACACATACACCTACACCTACACCTACACTTAAGTCTAATCCCCAAACCGAATCCAAACCCTGTTCCTCCTCTGCTAATGTATATAACACGCTACTTTGCAACACTGCCACAACAGAAGCAGCAGCAACAGCAACAGCAACAAACATTA
**************************************************..(((.(((((........((.(((((((((.......((((.((....................................................)).))))........))).......))))))...))........))))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 M059
embryo
 V112
male body		 M022
male body
..............................................................................................................................................................AAGCCTGGTCCTCCTCTGC.......................................................................... 19 2 1 214.00 214 214 0 0 0
..............................................................................................................................................................AAGCCTGGTCCTCCTCTGCT......................................................................... 20 2 1 181.00 181 180 1 0 0
..............................................................................................................................................................AAGCCTGGTCCTCCTCTGCTA........................................................................ 21 2 1 59.00 59 59 0 0 0
.............................................................................................................................................................GAAGCCTGGTCCTCCTCTGC.......................................................................... 20 3 15 46.47 697 697 0 0 0
.............................................................................................................................................................GAAGCCTGGTCCTCCTCTGCT......................................................................... 21 3 7 25.29 177 176 0 0 1
...............................................................................................................................................................AGCCTGGTCCTCCTCTGCTA........................................................................ 20 2 1 19.00 19 19 0 0 0
...............................................................................................................................................................AGCCTGGTCCTCCTCTGCTAA....................................................................... 21 2 1 13.00 13 13 0 0 0
.............................................................................................................................................................GAAGCCTGGTCCTCCTCTG........................................................................... 19 3 20 12.55 251 250 1 0 0
..................................................................................................................................................................CTGGTCCTCCTCTGCTAAACT.................................................................... 21 3 4 8.75 35 35 0 0 0
..............................................................................................................................................................AAGCCTGGTCCTCCTCTGCTAA....................................................................... 22 2 1 6.00 6 6 0 0 0
...................................................................................................................................................................TGGTCCTCCTCTGCTAAACT.................................................................... 20 3 8 5.50 44 44 0 0 0
.................................................................................................................................................................CCTGGTCCTCCTCTGCTAAAC..................................................................... 21 3 1 5.00 5 5 0 0 0
...............................................................................................................................................................AGCCTGGTCCTCCTCTGCT......................................................................... 19 2 10 4.10 41 41 0 0 0
.............................................................................................................................................................GAAGCCTGGTCCTCCTCTGCTA........................................................................ 22 3 1 4.00 4 4 0 0 0
...............................................................................................................................................................AGCCTGGTCCTCCTCTGCTAAA...................................................................... 22 3 1 4.00 4 4 0 0 0
..............................................................................................................................................................AAGCCTGGTCCTCCTCTGCTT........................................................................ 21 3 2 4.00 8 8 0 0 0
.................................................................................................................................................................CCTGGTCCTCCTCTGCTAAA...................................................................... 20 2 1 4.00 4 4 0 0 0
..............................................................................................................................................................AAGCCTGGTCCTCCTCTG........................................................................... 18 2 8 3.88 31 31 0 0 0
.................................................................................................................................................................CCTGGTCCTCCTCTGCTAA....................................................................... 19 1 1 3.00 3 3 0 0 0
.............................................................................................................................................................GAAGCCTGGTCCTCCTCTGCTAA....................................................................... 23 3 1 3.00 3 3 0 0 0
...................................................................................................................................................................TGGTCCTCCTCTGCTAAA...................................................................... 18 2 1 3.00 3 3 0 0 0
..................................................................................................................................................................CTGGTCCTCCTCTGCTAAA...................................................................... 19 2 1 3.00 3 3 0 0 0
..................................................................................................................................................................CTGGTCCTCCTCTGCTAAAC..................................................................... 20 3 6 2.17 13 13 0 0 0
................................................................................................................................................................GCCTGGTCCTCCTCTGCTAA....................................................................... 20 2 1 2.00 2 2 0 0 0
.................................................................................................................................................................CCTGGTCCTCCTCTGCTAAACT.................................................................... 22 3 1 2.00 2 2 0 0 0
...............................................................................................................................................................AGCCTGGTCCTCCTCTGC.......................................................................... 18 2 19 1.42 27 27 0 0 0
.............................................................................................................................................................CAAGCCTGGTCCTCCTCTGCT......................................................................... 21 3 4 1.00 4 4 0 0 0
....................CTACGGCGTCGGCCCACTCCGGCGAA............................................................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0
............................................................................................................................................................CGAAGCCTGGTCCTCCTCTGC.......................................................................... 21 3 2 1.00 2 2 0 0 0
......................ACGGCGTCGGCCCACTCCGGCGAAGAA.......................................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0
..................................................................................................................................................................CTGGTCCTCCTCTGCTAA....................................................................... 18 1 1 1.00 1 1 0 0 0
.............................................................................................................................................................GAACCCTGGTCCTCCTCTGCT......................................................................... 21 2 1 1.00 1 1 0 0 0
..............................................................................................................................................................AAGCCTGGTCCTCCTCTTCTAA....................................................................... 22 3 1 1.00 1 1 0 0 0
....................CTACGGCGTCGGCCCACTCCGGCGAAGAAG......................................................................................................................................................................................................... 30 0 1 1.00 1 0 0 1 0
................................................................................................................................................................GCCTGGTCCTCCTCTGCTA........................................................................ 19 2 5 0.60 3 3 0 0 0
..............................................................................................................................................................AAGCCTGGTCCTCCTCTGT.......................................................................... 19 3 20 0.55 11 11 0 0 0
.................................................................................................................................................................CCTGGTCCTCCTCTGCTA........................................................................ 18 1 2 0.50 1 1 0 0 0
...............................................................................................................................................................GACCTGGTCCTCCTCTGCTAA....................................................................... 21 3 2 0.50 1 1 0 0 0
.................................................................................................................................................................CCTGGTCCTCCTCTGCTAAG...................................................................... 20 2 2 0.50 1 1 0 0 0
...................................................................................................................................................................TGGTCCTCCTCTGCTAAAC..................................................................... 19 3 16 0.44 7 7 0 0 0
..............................................................................................................................................................AGGCCTGGTCCTCCTCTGCTA........................................................................ 21 3 3 0.33 1 1 0 0 0
...................................................................................................................................................................TGTTCCTCCTCTGCTAAACTG................................................................... 21 3 6 0.17 1 1 0 0 0
..............................................................................................................................................................AAGCCTGGTCCTCCTCTGCC......................................................................... 20 3 20 0.10 2 2 0 0 0
...............................................................................................................................................................AGCCTGGTCCTCCTCTGCTT........................................................................ 20 3 20 0.10 2 2 0 0 0
.............................................................................................................................................................ACAGCCTGGTCCTCCTCTGCT......................................................................... 21 3 11 0.09 1 1 0 0 0
.............................................................................................................................................................GAAGCCTGATCCTCCTCTGC.......................................................................... 20 3 15 0.07 1 1 0 0 0
................................................................................................................................................................GCCTGGTCCTCCTCTGCTAT....................................................................... 20 3 16 0.06 1 1 0 0 0
............................................................................................................................................................CGAAGCCTGGTCCTCCTCT............................................................................ 19 3 20 0.05 1 1 0 0 0

Anti-sense strand reads

CCGGTGGTTAAGCAGGAGGAGATGCCGCAGCCGGGTGAGGCCGCTTCTTCCATTCGATCACGAGGTCGGCGGCCGTCTGTCAACGGTAAAGCGAACGGGTGGGTGTGTATGTGGATGTGGATGTGGATGTGAATTCAGATTAGGGGTTTGGCTTAGGTTTGGGACAAGGAGGAGACGATTACATATATTGTGCGATGAAACGTTGTGACGGTGTTGTCTTCGTCGTCGTTGTCGTTGTCGTTGTTTGTAAT
**************************************************..(((.(((((........((.(((((((((.......((((.((....................................................)).))))........))).......))))))...))........))))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 V112
male body		 M022
male body		 GSM343916
embryo
................................................................................................................................................................CGGACCAGGAGGAGACGATTT...................................................................... 21 3 1 102.00 102 85 16 1 0
.................................................................................................................................................................GGACCAGGAGGAGACGATTT...................................................................... 20 2 1 63.00 63 50 13 0 0
................................................................................................................................................................CGGACCAGGAGGAGACGATT....................................................................... 20 2 1 48.00 48 32 12 4 0
..............................................................................................................................................................TTCGGACCAGGAGGAGACGA......................................................................... 20 2 1 38.00 38 26 12 0 0
.................................................................................................................................................................GGACCAGGAGGAGACGATT....................................................................... 19 1 1 38.00 38 32 6 0 0
..............................................................................................................................................................TTCGGACCAGGAGGAGACGAT........................................................................ 21 2 1 34.00 34 25 7 2 0
...............................................................................................................................................................TCGGACCAGGAGGAGACGAT........................................................................ 20 2 1 27.00 27 20 7 0 0
...............................................................................................................................................................TCGGACCAGGAGGAGACGATT....................................................................... 21 2 1 24.00 24 18 6 0 0
................................................................................................................................................................TGGACCAGGAGGAGACGATT....................................................................... 20 2 1 13.00 13 7 6 0 0
..................................................................................................................................................................GACCAGGAGGAGACGATTTGA.................................................................... 21 3 4 10.25 41 33 8 0 0
..............................................................................................................................................................TTCGGACCAGGAGGAGACGATT....................................................................... 22 2 1 9.00 9 6 2 1 0
..................................................................................................................................................................GACCAGGAGGAGACGATTT...................................................................... 19 2 1 9.00 9 7 2 0 0
.................................................................................................................................................................GGACCAGGAGGAGACGATTTG..................................................................... 21 3 1 8.00 8 6 2 0 0
...................................................................................................................................................................ACCAGGAGGAGACGATTTGA.................................................................... 20 3 8 7.00 56 38 16 2 0
..................................................................................................................................................................GACCAGGAGGAGACGATT....................................................................... 18 1 1 7.00 7 7 0 0 0
.............................................................................................................................................................CTTCGGACCAGGAGGAGACGA......................................................................... 21 3 7 6.86 48 30 17 1 0
.............................................................................................................................................................TTTCGGACCAGGAGGAGACGA......................................................................... 21 2 1 5.00 5 3 2 0 0
.................................................................................................................................................................GGACCAGGAGGAGACGAT........................................................................ 18 1 2 4.00 8 8 0 0 0
................................................................................................................................................................CGGACCAGGAGGAGACGAT........................................................................ 19 2 5 3.80 19 14 4 1 0
.............................................................................................................................................................CTTCGGACCAGGAGGAGACGAT........................................................................ 22 3 1 3.00 3 2 1 0 0
................................................................................................................................................................TGGACCAGGAGGAGACGAT........................................................................ 19 2 4 2.50 10 6 4 0 0
.................................................................................................................................................................GGACCAGGAGGAGACGATTTGA.................................................................... 22 3 1 2.00 2 2 0 0 0
.............................................................................................................................................................TTTCGGACCAGGAGGAGACGAT........................................................................ 22 2 1 2.00 2 2 0 0 0
...............................................................................................................................................................TTGGACCAGGAGGAGACGAT........................................................................ 20 2 2 1.50 3 1 2 0 0
...............................................................................................................................................................TCGGACCAGGAGGAGACGA......................................................................... 19 2 10 1.50 15 13 2 0 0
...............................................................................................................................................................TTGGACCAGGAGGAGACGATT....................................................................... 21 2 1 1.00 1 1 0 0 0
................................................................................................................................................................TGGACCAGGAGGAGACGATTT...................................................................... 21 3 1 1.00 1 1 0 0 0
..............................................................................................................................................................TTTGGACCAGGAGGAGACGAT........................................................................ 21 2 1 1.00 1 1 0 0 0
..................................................................................................................................................................GACCAGGAGGAGACGATTTG..................................................................... 20 3 6 1.00 6 6 0 0 0
..............................................................................................................................................................TTCGGACCAGGAGGAGACG.......................................................................... 19 2 1 1.00 1 1 0 0 0
..................................................................................................................................................................GACCAGGAGGAGACGATTTCT.................................................................... 21 3 1 1.00 1 1 0 0 0
.............................................................................................................................................................TTTCGGGCCAGGAGGAGACGAT........................................................................ 22 3 1 1.00 1 1 0 0 0
..............................................................................................................................................................ATCGGACCAGGAGGAGACGATT....................................................................... 22 3 1 1.00 1 1 0 0 0
.................................................................................................................................................................GGACCAGGAGGAGACGATTG...................................................................... 20 2 1 1.00 1 1 0 0 0
.............................................................................................................................................................TCTCGGACCAGGAGGAGACGAT........................................................................ 22 3 2 0.50 1 0 1 0 0
................................................................................................................................................................TGGACCAGGTGGAGACGATT....................................................................... 20 3 2 0.50 1 1 0 0 0
..TGTGCTTAGGCAGGAGGAGAT.................................................................................................................................................................................................................................... 21 3 2 0.50 1 0 0 0 1
.................................................................................................................................................................GGACCAGGAGGAGCCGATT....................................................................... 19 2 2 0.50 1 1 0 0 0
.................................................................................................................................................................GCACCAGGAGGAGACGATTT...................................................................... 20 3 3 0.33 1 1 0 0 0
...............................................................................................................................................................TTGGACCAGGAGGAGACGA......................................................................... 19 2 4 0.25 1 1 0 0 0
.................................................................................................................................................................TGACCAGGAGGAGACGATT....................................................................... 19 2 4 0.25 1 0 1 0 0
......................................................................................................GTGTGTACGTGGTTGTGGATG................................................................................................................................ 21 2 5 0.20 1 1 0 0 0
..............................................................................................................................................................CTCGGACCAGGAGGAGACGAT........................................................................ 21 3 5 0.20 1 1 0 0 0
.............................................................................................................................................................CTTCGGACCAGGAGGAGACG.......................................................................... 20 3 15 0.20 3 3 0 0 0
.............................................................GAGGGCGGAGGCCGTCTGTCG......................................................................................................................................................................... 21 3 6 0.17 1 1 0 0 0
.................................................................................................................................................................TGACCAGGAGGAGACGATTT...................................................................... 20 3 6 0.17 1 1 0 0 0
...............................................................................................................................................................TCGGACCAGGAGGAGACG.......................................................................... 18 2 19 0.16 3 3 0 0 0
..............................................................................................................................................................TTCGGACCAGGAGGAGAC........................................................................... 18 2 8 0.13 1 1 0 0 0
...................................................................................................................................................................ACCAGGAGGAGACGATTTG..................................................................... 19 3 16 0.13 2 1 1 0 0
..............................................................................................................................................................TTCAGACCAGGAGGAGACGA......................................................................... 20 3 8 0.13 1 0 1 0 0
.......................................................................................AAATCTAACGGGTGGGTTTG................................................................................................................................................ 20 3 10 0.10 1 1 0 0 0
.............................................................................................................................................................GTTCGGACCAGGAGGAGACG.......................................................................... 20 3 10 0.10 1 1 0 0 0
........................................................................................AATCTAACGGGTGGGTTTGT............................................................................................................................................... 20 3 11 0.09 1 0 1 0 0
........................................................................................................GTGTACGTGGTTGTGGATGT............................................................................................................................... 20 2 12 0.08 1 1 0 0 0
..............................................................................................ACGGGTGGGTGTGTACGA........................................................................................................................................... 18 2 18 0.06 1 0 0 0 1
................................................................................................................................................................TGGACCAGTAGGAGACGAT........................................................................ 19 3 20 0.05 1 0 1 0 0
.............................................................................................................................................................CTTCGGACCAGGAGGAGAC........................................................................... 19 3 20 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 2:14967467-14967717 + dps_563 GGCCACCA---ATTCGTCCTCCTCTACG------------GCGTCGGCCCACTCCGGCGA------AGAAGGTAAGCTAGTGCTCCAGC-----------------------------------------CGCCGGC---AGACAGTTG--------------------------------------------------------------------------CCAT---TTCGCTTGCC---CACCCACACATACACCTACACCTACACCTACACTTAAGTCTAATCCCCAAACCGAATC-----------CA----------------------------AACCCTG------------TTCCTCCTC---------------------------------------------------------------------------------------TGCTAATGTATATAACACGCTACTTTGCAACACTGCCACAACAGAA---------GCA---------------------------GCAGC-------AACAG---------CAACAGCA---AC---------AAACA-TTA
droPer2 scaffold_0:5442627-5442871 - GGCCACCA---ATTCGTCCTCCTCTACG------------GCGTCGGCCCACTCCGGCGA------AGAAGGTAAGCTAGTGCTCCAGC-----------------------------------------CGCCGGC---AGACAGTTG--------------------------------------------------------------------------CCAT---TTCGCTTGCC---CACCCACACATACACCTA------CACCTACACTTAAGTCTAATCCCCAAACCGAATC-----------CA----------------------------AACCCTG------------TTCCTCCTC---------------------------------------------------------------------------------------TGCTAATGTATATAACACGCTACCTTGCAACACTGCCACAACAGAA---------GCA---------------------------GCAGC-------AACAG---------CAACAGAA---AC---------AAACA-TTA
droWil2 scf2_1100000004902:8232811-8233100 - dwi_3145 GGCCACCA---ATTCATC---ATCAT------------------CTGGAAATTCTGGGGA------AGAAGGTAAGCAGCAGCAGCAAGAT------GAAAATGAA--GAAGAGGAGGAGGAGGAGAAAG--------------AGAAGATGC---------------------------------------------AAAAAGATAATTTTAATGCCAATTGCAAT---TTTGCTTGTTCCTTGCCCAAA------------------------------TCC---------TCCAAATCT----CCCAATTGTCCCC---CTTG----------------TAT---------------C-------CC---------------------------------------------------------------------------------------TGCTAATGTAAATAACACGCTACTTTGCAACACTGCCACTACACACAATACAACAACAAAAACAACAACAGAAGCAACAACATCATCTAC------TATGTG---------TACTATTA-----------------------
droVir3 scaffold_12723:4828096-4828350 + TGCCACCGCGCATTCACC---CGCCTTG---GCG------GCGGCTGCTGTTGCCGCTGCCGCCTATCAGCTGTCCGCAA--CGTCAGCGGCGGCAGCAGC----------------------------------------AGCAGCGG--------------------------------------------------------------------------CCT-----------CCTCCTCCTCTGCG------------------------------TCC---------GCCACGGC-----------CGCTGCCTCTAGCTGCCAAG----CGGCCAGTGCGTT------------TGTGGCCTCGGCCAGCATGCTGGACATGCAACAACAACTGGAGGA----------------------------------------------------------------------------------------------GCA---------ACAGCAGCAGCAGCAGCAGCAACA------ACACC-------ACCAGCACTACCTGCA----------------------ACA-TCA
droMoj3 scaffold_6540:28869648-28869958 + dmo_2106 GGCCACCA---ACTCATC---ATCATCGACGGCGACGACGGCGTCAGTCAGTTCCGTGGA------AGAAGGTAAGGCAA--CAACGACAACAACAACAACAACGACACAACTACAACTACAACAACTACTGTCAGA---G--------------CAACAGCAGCTGCAACAGCAACGACAACAACAACAACAACAGCAACAACAACCATTAAATTCTAGCTGCAAT------------------AA-----------------------------------------------------------------------CTTATCCG----------------C--TTTGTTAGACCCAAAC-------CT---------------------------------------------------------------------------------------TGCCATTGTAAATAATACGCTACTACACTCTACTACCACATCAACA---------ACA---------------------------ACAGC-------AACAA---------CACCAACT---TTTAACGTCATGAACA-ACA
droGri2 scaffold_15074:4004781-4005061 - dgr_244 GGCAACCA---ACTCATCCAGTTCGACA------------GCCTCTGCACACTCTACGGA------AGAAGGTAAGATGGAACAAGAACAACCACAACAACAACAA--GAACTAGAACAAGAACAACAAC--------------AGACGCTCGAACAACAAGCGCTACAACTG--------------------------------------------------CAAC---AAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTGCAACAGCAACAGCAACTATTCAATGTTAACAATCATTCAAGCACAACGCCCCTAAATGCTATTGTAAATAACACGCTACTTTGCAACACTACCACAACAACA---------ACA---------------------------ACAAC-------TACAA---------AACAAGCT---TC---------AAATA-TTA
droAna3 scaffold_12911:3204576-3204761 + AGCCACCAATAGTTCCTC---C------------------------------TCCGGCGA------AGAAGGTAAGCCCGCGCAGCACCAG---------------------------------------CTTCATC---CAGA-------------------------------------------------------------------CAAA---------------ATGGGCTGCC---GAAGCGTA------------------------------TCC------CAAACCGTAAC-----------CCAAGTCCAAACCA----------------CGTCCTGTTC--------C-------TT---------------------------------------------------------------------------------------TGTCCCTGTAAATAACACGCTACTTTGCAACAC---------------------------------------------------------------TAAGAG---------CACCCTGCCACAT---------AACCA-TCC
droBip1 scf7180000396640:78428-78607 + AGCCACCAACAGTTCCTC---C------------------------------TCCGGCGA------AGAAGGTAAGCCCGCGCAGCACCAG---------------------------------------CTTCATC---CAGA-------------------------------------------------------------------CCAA---------CCG---ATGGCCTGCC---AAACCGAG------------------------------TCC---------CCCGTAAC-----------CGTAACCCAAGTCCCAACCA----------AGCCCTGTTC--------C-------TT---------------------------------------------------------------------------------------TGTCCCTGTAAATAACACGCTACTTTGCAACAC---------------------------------------------------------------TAAGAG---------CACCCTGC-------------C---------
droKik1 scf7180000302778:97710-97930 - GGCCACCA---GTTCCTC---CTCATCG------------GCCTCGGGCCACTCCGGCGA------AGAAGGTAAGCCCGAGCAGCAAC-----------------------------------------CGTCAGCCGTCAGCAGCTG--------------------------------------------------------------------------CCCC---TTCGCTTGCC---CAACCAAG------------------------------ACCCAACCCG------AACCCAAAAC-----CACATCCTCAATCA----------------CGTCCCG------------------------------------------------------------------------------------------------------------CTCCCTTGTAAATAACACGCTACTTTGCAACACTGTCAGCACAGCA---------AC----------------------------TCTAA------CAGCAG---------CAGCCGCA---T------------CCA-AGA
droFic1 scf7180000453812:196174-196322 - GGCCACCA---GTTCCTC---CTCGTCG------------GCATCGGGCCACTCCGGTGA------AGAAGGTAAGCCAGAGCAGCCAG-----------------------------------------CGACGGA---GCAGAGCTG--------------------------------------------------------------------------CCCC---ACCGCTCGCC---CACCCAAC------------------------------AC-----------------------------------------CC----------------CGTCCTG------------------------------------------------------------------------------------------------------------TCCCCCTGTAAATAACA---------------CCGA------------------------------------------------------------AAACAG---------CACCCTTA-----------------------
droEle1 scf7180000490994:598183-598383 + GGCCACCA---GTTCCTC---CTCATCG------------GCATCGGGCCACTCCGGTGA------AGAAGGTAAGCCAGAGCAGCTCCGC--------------------------------------CCGTCAGC---CAGCAGCTG--------------------------------------------------------------------------CCCC---ACC---TCCG---TACCCGTATCCATATCT------------------------GTATCCT------TATCCACAGC-----CACATCCACATCCA----------------CATCCTG------------------------------------------------------------------------------------------------------------TTCCCTTGTAAATAACA---------------CTGCTATGA------------------------------------------------G------CAAGAG---------CACCCTTA------------ACCAGCA-TCA
droRho1 scf7180000779900:495745-495941 + GGCCACCA---GTTCCTC---CTCATCG------------GCATCGGGCCACTCCGGTGA------AGAAGGTAAGCCAGAGCAGCATC-----------------------------------------CGTCAGC---CAGCAGCTG--------------------------------------------------------------------------CCCCACCTCCGCTTGCC---CACCCACA------------------------------ATC------CAGCCCGTATC-----------CCTATCCACATCCA----------------CATTCTG------------------------------------------------------------------------------------------------------------TTCCCTTGTAAATAACA---------------ATGCTAGCACAGCA---------ACG---------------------------TCTGCTACGAGCACGAG---------CACCC--------------------------
droBia1 scf7180000302402:596712-596895 + GGCCACCA---GTTCCTC---CTCATCG------------GCATCGGCTCACTCCGGTGA------AGAAGGTAAGCCAGAGCAGCTCC-----------------------------------------AGTCAGC---CAGCAACTG--------------------------------------------------------------------------CTCGAAAACCGCTTGCC---AACCTGAA------------------------------------------CCCGCATC-----------CATATCCCTGTCCGCAACCCTATC----CACATCCTG------------------------------------------------------------------------------------------------------------TATCCCTGTAAATAACA---------------CTG------------------------------------------------------A------CAAGAG---------CACCCTTA------------AT---------
droTak1 scf7180000415256:338922-339085 + CGCCACCA---GTTCCTC---CTCATCG------------GCATCGGGTCACTCCGGTGA------AGAAGGTAAGCCAGAGCAGCTCC-----------------------------------------CGTCAGGCGTCAGCACACC--------------------------------------------------------------------------TCCA---AT--------------------------------------------------------------------------------CGTTTCCCTATCCG----------------CATCCTG------------------------------------------------------------------------------------------------------------TATCCCTGTAAATAACA---------------CCGCCACCACTGAA---------ACG---------------------------TCTGC------CAAGAG---------CACCCTTA-----------------------
droEug1 scf7180000409804:1084392-1084590 + AGCCACCA---GTTCCTC---CTCGTCA------------GCATCGGGCCACTCCGGTGA------AGAAGGTAAGCCAGAGCAGCTCC-----------------------------------------AGTCAGT---CAGCAGCTG--------------------------------------------------------------------------CCCC---ACCGCTTGCCAACCACCCACA------------------------------GTCAAACCACAA-----------------------TCCCTATCCG----------------CATCCTG------------------------------------------------------------------------------------------------------------TTTCCCTGTAAATAACA---------------CCGCTACCACTGAA---------ACG---------------------------TCTGT------TAAGAG---------CACCCTTA------------ACCACCATATA
dm3 chr3R:14844159-14844355 + AGCCACCA---GTTCCTC---CTCATCG------------GCATCGGGTCAATCCGGTGA------AGAAGGTAAGCCAGAGCGGCTCC-----------------------------------------CGTCAGC---CAGCAGCCG--------------------------------------------------------------------------CCCC---TCAGCTTGCT---TACCCACA------------------------------ACTAAATCTCAATCCGAATC-----------CCTATCCTTATCTG----------------CATCCGG------------------------------------------------------------------------------------------------------------TTTCCCTGTAAATAACA---------------CTGCCACCACTGAA---------ACG---------------------------TCTGC------CAAGAG---------CACCCTTA-----------------------
droSim2 3r:6413350-6413546 - AGCCACCA---GTTCCTC---CTCATCG------------GCATCGGGTCAATCCGGTGA------AGAAGGTAAGCCAGAGCGGCTCC-----------------------------------------CGTCAGC---CAGCAGCCG--------------------------------------------------------------------------CCCC---TCAGCTTGCT---TACCCACA------------------------------ACTAAACCTCAATCCGAATC-----------CGTATCCTTATCTG----------------CATCCGG------------------------------------------------------------------------------------------------------------TTTCCCTGTAAATAACA---------------CTGCCACCACTGAA---------ACG---------------------------TCTGC------CAAGAG---------CACCCTTA-----------------------
droSec2 scaffold_77:93802-93998 - AGCCACCA---GTTCCTC---CTCATCG------------GCATCGGGTCAATCCGGTGA------AGAAGGTAAGCCAGAGCGGCTCC-----------------------------------------CGTCAGC---CAGCAGCCG--------------------------------------------------------------------------CCCC---TCAGCTTGCT---TACCCACA------------------------------ACTAAACCTCAATCCGAATC-----------CGTATCCTTATCTG----------------CATCCGG------------------------------------------------------------------------------------------------------------TTTCCCTGTAAATAACA---------------CTGCCACCACTGAA---------ACG---------------------------TCTGC------CAAGAG---------CACCCTTA-----------------------
droYak3 3R:3522194-3522392 + AGTCACCA---GTTCCTC---CTCATCG------------GCATCGGGTCACTCCGGTGA------AGAAGGTAAGCCTGAGCGGCTCC-----------------------------------------CGTCAGC---CAGCAGCCG--------------------------------------------------------------------------CCCC---ACTGCTTTCC---TACCCACA------------------------------ACTAAACATCAGTCCGAATC-----------CGTATCCTTATCTG----------------CATCCAG------------------------------------------------------------------------------------------------------------TTTTCTTGTAAATAACA---------------CTGCCACCACTGAA---------ACG---------------------------TCTGT------CAAGAG---------CACCCTTA------------AT---------
droEre2 scaffold_4770:6785219-6785421 - AGCCACCA---GTTCCTC---CTCATCG------------GCATCGGGTCACTCCGGTGA------AGAAGGTAAGCCAGAGCGGCTCC-----------------------------------------CGTCAGC---CAGCAGCCG--------------------------------------------------------------------------CCCC---TCCTCTTGCT---TACCCACA------------------------------ACTAAATCTCAATCCGAATCCGAATC-----CGTATCCTTATCTG----------------CATCCGG------------------------------------------------------------------------------------------------------------TTTCCTTGTAAATAACA---------------CTGCCACCACTGAA---------ACG---------------------------TCTGC------CAAGAG---------CACCCTTA-----------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
GGCCACCA---ATTCGTCCTCCTCTACG------------GCGTCGGCCCACTCCGGCGA------AGAAGGTAAGCTAGTGCTCCAGC-----------------------------------------CGCCGGC---AGACAGTTG--------------------------------------------------------------------------CCAT---TTCGCTTGCC---CACCCACACATACACCTACACCTACACCTACACTTAAGTCTAATCCCCAAACCGAATC-----------CA----------------------------AACCCTG------------TTCCTCCTC---------------------------------------------------------------------------------------TGCTAATGTATATAACACGCTACTTTGCAACACTGCCACAACAGAA---------GCA---------------------------GCAGC-------AACAG---------CAACAGCA---AC---------AAACA-TTASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......................CTACG------------GCGTCGGCCCACTCCGGCGA------A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
.........................ACG------------GCGTCGGCCCACTCCGGCGA------AGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010010000000
.......................CTACG------------GCGTCGGCCCACTCCGGCGA------AGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.0010000001000
droPer2
GGCCACCA---ATTCGTCCTCCTCTACG------------GCGTCGGCCCACTCCGGCGA------AGAAGGTAAGCTAGTGCTCCAGC-----------------------------------------CGCCGGC---AGACAGTTG--------------------------------------------------------------------------CCAT---TTCGCTTGCC---CACCCACACATACACCTA------CACCTACACTTAAGTCTAATCCCCAAACCGAATC-----------CA----------------------------AACCCTG------------TTCCTCCTC---------------------------------------------------------------------------------------TGCTAATGTATATAACACGCTACCTTGCAACACTGCCACAACAGAA---------GCA---------------------------GCAGC-------AACAG---------CAACAGAA---AC---------AAACA-TTASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
GGCCACCA---ATTCATC---ATCAT------------------CTGGAAATTCTGGGGA------AGAAGGTAAGCAGCAGCAGCAAGAT------GAAAATGAA--GAAGAGGAGGAGGAGGAGAAAG--------------AGAAGATGC---------------------------------------------AAAAAGATAATTTTAATGCCAATTGCAAT---TTTGCTTGTTCCTTGCCCAAA------------------------------TCC---------TCCAAATCT----CCCAATTGTCCCC---CTTG----------------TAT---------------C-------CC---------------------------------------------------------------------------------------TGCTAATGTAAATAACACGCTACTTTGCAACACTGCCACTACACACAATACAACAACAAAAACAACAACAGAAGCAACAACATCATCTAC------TATGTG---------TACTATTA-----------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............................................................................................................................AAG--------------AGAAGATGC---------------------------------------------AAAAAGAT.........................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
.............................................TGGAAATTCTGGGGA------AGAAGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
...........ATTCATC---ATCAT------------------CTGGAAATTCTGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010
......................................................................................................TGAA--GAAGAGGAGGAGGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1940.50200200
............................................................................................................GAAGAGGAGGAGGAGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2040.25101000
.............................................................................................................AAGAGGAGGAGGAGGAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18100.20202000
.........................................................................................................A--GAAGAGGAGGAGGAGGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19160.06101000
.......................................................................................................GAA--GAAGAGGAGGAGGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18160.06100100
droVir3
TGCCACCGCGCATTCACC---CGCCTTG---GCG------GCGGCTGCTGTTGCCGCTGCCGCCTATCAGCTGTCCGCAA--CGTCAGCGGCGGCAGCAGC----------------------------------------AGCAGCGG--------------------------------------------------------------------------CCT-----------CCTCCTCCTCTGCG------------------------------TCC---------GCCACGGC-----------CGCTGCCTCTAGCTGCCAAG----CGGCCAGTGCGTT------------TGTGGCCTCGGCCAGCATGCTGGACATGCAACAACAACTGGAGGA----------------------------------------------------------------------------------------------GCA---------ACAGCAGCAGCAGCAGCAGCAACA------ACACC-------ACCAGCACTACCTGCA----------------------ACA-TCASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACTGGAGGA----------------------------------------------------------------------------------------------GCA---------ACAG...................................................................................2311.001000000000000000000000000000000000000000000000000000000000000010
.....................................................................................................................................................................................................................................................................................................................................................AGTGCGTT------------TGTGGCCTCGGCC.................................................................................................................................................................................................................................2111.001000000010000000000000000000000000000000000000000000000000000000
............................................CTGCTGTTGCCGCTGCCGCCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2140.251100000000000000000000000000000000000000000000000000000000000000
............................................................................................GGCAGCAGC----------------------------------------AGCAGCGG--------------------------------------------------------------------------CC......................................................................................................................................................................................................................................................................................................................................................................................1950.201001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................GAGGA----------------------------------------------------------------------------------------------GCA---------ACAGCAGCAGCA...........................................................................2090.111000000000000000000000000000001000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................A----------------------------------------------------------------------------------------------GCA---------ACAGCAGCAGCAGCA........................................................................19200.102000000000000010000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCAACA------AC.......................................................19200.051000000000000000000000000000000000000100000000000000000000000000
........................................................................................CGGCGGCAGCAGC----------------------------------------AGCAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000100000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................GGA----------------------------------------------------------------------------------------------GCA---------ACAGCAGCAGCA...........................................................................18200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
GGCCACCA---ACTCATC---ATCATCGACGGCGACGACGGCGTCAGTCAGTTCCGTGGA------AGAAGGTAAGGCAA--CAACGACAACAACAACAACAACGACACAACTACAACTACAACAACTACTGTCAGA---G--------------CAACAGCAGCTGCAACAGCAACGACAACAACAACAACAACAGCAACAACAACCATTAAATTCTAGCTGCAAT------------------AA-----------------------------------------------------------------------CTTATCCG----------------C--TTTGTTAGACCCAAAC-------CT---------------------------------------------------------------------------------------TGCCATTGTAAATAATACGCTACTACACTCTACTACCACATCAACA---------ACA---------------------------ACAGC-------AACAA---------CACCAACT---TTTAACGTCATGAACA-ACASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...CACCA---ACTCATC---ATCATCGACGGCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
...........................................TCAGTCAGTTCCGTGGA------AGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
...................................................................................AACGACAACAACAACAACAACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22180.061100000
................................................................................................................................................................................CGACAACAACAACAACAACA...................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000010
...................................................................................AACGACAACAACAACAACAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCAACA---------ACA---------------------------ACAGC-------AAC..........................................20200.051100000
........................................................................................................................................................................................ACAACAACAACAGCAACAACA..........................................................................................................................................................................................................................................................................................................................................................................................................21200.051000010
........................................................................................CAACAACAACAACAACGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051100000
droGri2
GGCAACCA---ACTCATCCAGTTCGACA------------GCCTCTGCACACTCTACGGA------AGAAGGTAAGATGGAACAAGAACAACCACAACAACAACAA--GAACTAGAACAAGAACAACAAC--------------AGACGCTCGAACAACAAGCGCTACAACTG--------------------------------------------------CAAC---AAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTGCAACAGCAACAGCAACTATTCAATGTTAACAATCATTCAAGCACAACGCCCCTAAATGCTATTGTAAATAACACGCTACTTTGCAACACTACCACAACAACA---------ACA---------------------------ACAAC-------TACAA---------AACAAGCT---TC---------AAATA-TTASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...........ACTCATCCAGTTCGACA------------GC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACA---------ACA---------------------------ACAAC-------TACAA---------AA.............................20150.07110
droAna3
AGCCACCAATAGTTCCTC---C------------------------------TCCGGCGA------AGAAGGTAAGCCCGCGCAGCACCAG---------------------------------------CTTCATC---CAGA-------------------------------------------------------------------CAAA---------------ATGGGCTGCC---GAAGCGTA------------------------------TCC------CAAACCGTAAC-----------CCAAGTCCAAACCA----------------CGTCCTGTTC--------C-------TT---------------------------------------------------------------------------------------TGTCCCTGTAAATAACACGCTACTTTGCAACAC---------------------------------------------------------------TAAGAG---------CACCCTGCCACAT---------AACCA-TCCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATAACACGCTACTTTGC..................................................................................................................1911.001010000
........ATAGTTCCTC---C------------------------------TCCGGCGA------AGAAGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
droBip1
AGCCACCAACAGTTCCTC---C------------------------------TCCGGCGA------AGAAGGTAAGCCCGCGCAGCACCAG---------------------------------------CTTCATC---CAGA-------------------------------------------------------------------CCAA---------CCG---ATGGCCTGCC---AAACCGAG------------------------------TCC---------CCCGTAAC-----------CGTAACCCAAGTCCCAACCA----------AGCCCTGTTC--------C-------TT---------------------------------------------------------------------------------------TGTCCCTGTAAATAACACGCTACTTTGCAACAC---------------------------------------------------------------TAAGAG---------CACCCTGC-------------C---------SizeHit CountTotal NormTotal
No Reads
droKik1
GGCCACCA---GTTCCTC---CTCATCG------------GCCTCGGGCCACTCCGGCGA------AGAAGGTAAGCCCGAGCAGCAAC-----------------------------------------CGTCAGCCGTCAGCAGCTG--------------------------------------------------------------------------CCCC---TTCGCTTGCC---CAACCAAG------------------------------ACCCAACCCG------AACCCAAAAC-----CACATCCTCAATCA----------------CGTCCCG------------------------------------------------------------------------------------------------------------CTCCCTTGTAAATAACACGCTACTTTGCAACACTGTCAGCACAGCA---------AC----------------------------TCTAA------CAGCAG---------CAGCCGCA---T------------CCA-AGASizeHit CountTotal NormTotal
No Reads
droFic1
GGCCACCA---GTTCCTC---CTCGTCG------------GCATCGGGCCACTCCGGTGA------AGAAGGTAAGCCAGAGCAGCCAG-----------------------------------------CGACGGA---GCAGAGCTG--------------------------------------------------------------------------CCCC---ACCGCTCGCC---CACCCAAC------------------------------AC-----------------------------------------CC----------------CGTCCTG------------------------------------------------------------------------------------------------------------TCCCCCTGTAAATAACA---------------CCGA------------------------------------------------------------AAACAG---------CACCCTTA-----------------------SizeHit CountTotal NormTotal
No Reads
droEle1
GGCCACCA---GTTCCTC---CTCATCG------------GCATCGGGCCACTCCGGTGA------AGAAGGTAAGCCAGAGCAGCTCCGC--------------------------------------CCGTCAGC---CAGCAGCTG--------------------------------------------------------------------------CCCC---ACC---TCCG---TACCCGTATCCATATCT------------------------GTATCCT------TATCCACAGC-----CACATCCACATCCA----------------CATCCTG------------------------------------------------------------------------------------------------------------TTCCCTTGTAAATAACA---------------CTGCTATGA------------------------------------------------G------CAAGAG---------CACCCTTA------------ACCAGCA-TCASizeHit CountTotal NormTotal
No Reads
droRho1
GGCCACCA---GTTCCTC---CTCATCG------------GCATCGGGCCACTCCGGTGA------AGAAGGTAAGCCAGAGCAGCATC-----------------------------------------CGTCAGC---CAGCAGCTG--------------------------------------------------------------------------CCCCACCTCCGCTTGCC---CACCCACA------------------------------ATC------CAGCCCGTATC-----------CCTATCCACATCCA----------------CATTCTG------------------------------------------------------------------------------------------------------------TTCCCTTGTAAATAACA---------------ATGCTAGCACAGCA---------ACG---------------------------TCTGCTACGAGCACGAG---------CACCC--------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
GGCCACCA---GTTCCTC---CTCATCG------------GCATCGGCTCACTCCGGTGA------AGAAGGTAAGCCAGAGCAGCTCC-----------------------------------------AGTCAGC---CAGCAACTG--------------------------------------------------------------------------CTCGAAAACCGCTTGCC---AACCTGAA------------------------------------------CCCGCATC-----------CATATCCCTGTCCGCAACCCTATC----CACATCCTG------------------------------------------------------------------------------------------------------------TATCCCTGTAAATAACA---------------CTG------------------------------------------------------A------CAAGAG---------CACCCTTA------------AT---------SizeHit CountTotal NormTotal
No Reads
droTak1
CGCCACCA---GTTCCTC---CTCATCG------------GCATCGGGTCACTCCGGTGA------AGAAGGTAAGCCAGAGCAGCTCC-----------------------------------------CGTCAGGCGTCAGCACACC--------------------------------------------------------------------------TCCA---AT--------------------------------------------------------------------------------CGTTTCCCTATCCG----------------CATCCTG------------------------------------------------------------------------------------------------------------TATCCCTGTAAATAACA---------------CCGCCACCACTGAA---------ACG---------------------------TCTGC------CAAGAG---------CACCCTTA-----------------------SizeHit CountTotal NormTotal
No Reads
droEug1
AGCCACCA---GTTCCTC---CTCGTCA------------GCATCGGGCCACTCCGGTGA------AGAAGGTAAGCCAGAGCAGCTCC-----------------------------------------AGTCAGT---CAGCAGCTG--------------------------------------------------------------------------CCCC---ACCGCTTGCCAACCACCCACA------------------------------GTCAAACCACAA-----------------------TCCCTATCCG----------------CATCCTG------------------------------------------------------------------------------------------------------------TTTCCCTGTAAATAACA---------------CCGCTACCACTGAA---------ACG---------------------------TCTGT------TAAGAG---------CACCCTTA------------ACCACCATATASizeHit CountTotal NormTotal
No Reads
dm3
AGCCACCA---GTTCCTC---CTCATCG------------GCATCGGGTCAATCCGGTGA------AGAAGGTAAGCCAGAGCGGCTCC-----------------------------------------CGTCAGC---CAGCAGCCG--------------------------------------------------------------------------CCCC---TCAGCTTGCT---TACCCACA------------------------------ACTAAATCTCAATCCGAATC-----------CCTATCCTTATCTG----------------CATCCGG------------------------------------------------------------------------------------------------------------TTTCCCTGTAAATAACA---------------CTGCCACCACTGAA---------ACG---------------------------TCTGC------CAAGAG---------CACCCTTA-----------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......A---GTTCCTC---CTCATCG------------GCATCGGGTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAA---------ACG---------------------------TCTGC------CAAGAG---------CACC...........................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................ATCGGGTCAATCCGGTGA------AGAAGGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTGAA---------ACG---------------------------TCTGC------CAAGAG---------CACCCT.........................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------ACG---------------------------TCTGC------CAAGAG---------CACCCT.........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
..................................................................AGAAGGTAAGCCAGAGCGGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
...........................................TCGGGTCAATCCGGTGA------AGAAGGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................CTATCCTTATCTG----------------CATCCGG------------------------------------------------------------------------------------------------------------T.............................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............TTCCTC---CTCATCG------------GCATCGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
.............................................GGGTCAATCCGGTGA------AGAAGGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................A------------------------------ACTAAATCTCAATCCGAATC-----------...............................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................TC-----------CCTATCCTTATCTG----------------CATCCGG------------------------------------------------------------------------------------------------------------TT............................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................GGGTCAATCCGGTGA------AGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
....................................................................................................................................TCAGC---CAGCAGCCG--------------------------------------------------------------------------CCCC---TCAGCTTGC........................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................ATCG------------GCATCGGGTCAATCCGGTGA------AGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................C---CAGCAGCCG--------------------------------------------------------------------------CCCC---TCGA.............................................................................................................................................................................................................................................................................................................................................................................18190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
AGCCACCA---GTTCCTC---CTCATCG------------GCATCGGGTCAATCCGGTGA------AGAAGGTAAGCCAGAGCGGCTCC-----------------------------------------CGTCAGC---CAGCAGCCG--------------------------------------------------------------------------CCCC---TCAGCTTGCT---TACCCACA------------------------------ACTAAACCTCAATCCGAATC-----------CGTATCCTTATCTG----------------CATCCGG------------------------------------------------------------------------------------------------------------TTTCCCTGTAAATAACA---------------CTGCCACCACTGAA---------ACG---------------------------TCTGC------CAAGAG---------CACCCTTA-----------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCCTGTAAATAACA---------------CTGCCACCACT...................................................................................................2711.00101000000000000000
........................................................................................................................................................................................................................................AGCTTGCT---TACCCACA------------------------------ACTA..........................................................................................................................................................................................................................................................................................................................2011.00100000000000001000
......................TCATCG------------GCATCGGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1590.11100000000010000000
droSec2
AGCCACCA---GTTCCTC---CTCATCG------------GCATCGGGTCAATCCGGTGA------AGAAGGTAAGCCAGAGCGGCTCC-----------------------------------------CGTCAGC---CAGCAGCCG--------------------------------------------------------------------------CCCC---TCAGCTTGCT---TACCCACA------------------------------ACTAAACCTCAATCCGAATC-----------CGTATCCTTATCTG----------------CATCCGG------------------------------------------------------------------------------------------------------------TTTCCCTGTAAATAACA---------------CTGCCACCACTGAA---------ACG---------------------------TCTGC------CAAGAG---------CACCCTTA-----------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................................GTCAATCCGGTGA------AGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
....................................................................AAGGTAAGCCAGAGCGGCTCC-----------------------------------------C....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
...................................................ATCCGGTGA------AGAAGGTGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1840.2510001
...................................................ATCCGGTGA------AGAAGGTGTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19190.1120200
droYak3
AGTCACCA---GTTCCTC---CTCATCG------------GCATCGGGTCACTCCGGTGA------AGAAGGTAAGCCTGAGCGGCTCC-----------------------------------------CGTCAGC---CAGCAGCCG--------------------------------------------------------------------------CCCC---ACTGCTTTCC---TACCCACA------------------------------ACTAAACATCAGTCCGAATC-----------CGTATCCTTATCTG----------------CATCCAG------------------------------------------------------------------------------------------------------------TTTTCTTGTAAATAACA---------------CTGCCACCACTGAA---------ACG---------------------------TCTGT------CAAGAG---------CACCCTTA------------AT---------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................TCACTCCGGTGA------AGAAGGTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000
.......................CATCG------------GCATCGGGTCACTCCGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
droEre2
AGCCACCA---GTTCCTC---CTCATCG------------GCATCGGGTCACTCCGGTGA------AGAAGGTAAGCCAGAGCGGCTCC-----------------------------------------CGTCAGC---CAGCAGCCG--------------------------------------------------------------------------CCCC---TCCTCTTGCT---TACCCACA------------------------------ACTAAATCTCAATCCGAATCCGAATC-----CGTATCCTTATCTG----------------CATCCGG------------------------------------------------------------------------------------------------------------TTTCCTTGTAAATAACA---------------CTGCCACCACTGAA---------ACG---------------------------TCTGC------CAAGAG---------CACCCTTA-----------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/17/2015 at 10:41 PM