ID:

dps_55

 Coordinate:

XL_group1e:8365783-8365840 -

 Confidence:

confident

 Class:

Testes-restricted

 Genomic Locale:

intergenic

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-32.1 -31.8

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

ATATTCTTCAGTGAAATGTGTACTCTTTTTTGAGCCGATTGAGGGTATTGAATGGCCATGTTATTGCGTTGGTTTATCCTATATCCAATACCGTAACGCGGCTGTTCAGAACTTTAATCGTATTCTATCCCAATATCCTGTGAGTGTCCAAAAAAATG

***********************************(((((((((...((((((((((.((((((...(((((............)))))...)))))).))))))))))..)))))))))...*********************************** 		Read size # Mismatch Hit Count Total Norm Total M040

female body

 SRR902011

testis

 V112

male body		 GSM444067

head

 M022

male body		 M062

head

 M059

embryo

 GSM343916

embryo
..................................................AATGGCCATGTTATTGCGTTGG...................................................................................... 22 0 1 73.00 73 5 28 35 3 0 0 1 1
......................................................................................AATACCGTAACGCGGCTGTTCA.................................................. 22 0 1 58.00 58 21 35 0 0 2 0 0 0
......................................CTGAGGGTAGTGAATGGCCT.................................................................................................... 20 3 7 39.14 274 156 0 114 0 4 0 0 0
......................................................................................AATACCGTAACGCGGCTGTTC................................................... 21 0 1 39.00 39 9 23 1 0 2 3 1 0
.......................................TGAGGGTAGTGAATGGCCTG................................................................................................... 20 3 10 26.80 268 253 0 15 0 0 0 0 0
......................................CTGAGGGTAGTGAATGGCC..................................................................................................... 19 2 2 21.00 42 30 0 12 0 0 0 0 0
.....................................CCTGAGGGTAGTGAATGGCC..................................................................................................... 20 3 3 20.00 60 47 0 13 0 0 0 0 0
.......................................TGAGGGTAGTGAATGGCCT.................................................................................................... 19 2 2 18.50 37 25 0 12 0 0 0 0 0
.......................................TGAGGGTAGTGAATGGCC..................................................................................................... 18 1 1 16.00 16 15 0 1 0 0 0 0 0
......................................................................................AATACCGTAACGCGGCTGTTT................................................... 21 1 1 13.00 13 1 9 1 0 1 1 0 0
......................................CTGAGGGTAGTGAATGGCCTT................................................................................................... 21 3 4 10.00 40 22 0 18 0 0 0 0 0
......................................................................................AATACCGTAACGCGGCTGTTCC.................................................. 22 1 1 9.00 9 1 5 0 0 1 2 0 0
..................................................AATGGCCATGTTATTGCGTTG....................................................................................... 21 0 1 8.00 8 2 0 3 3 0 0 0 0
......................................................................................AATACCGTAACGCGGCTGTT.................................................... 20 0 1 6.00 6 0 4 1 1 0 0 0 0
......................................................................................AATACCGTAACGCGGCTGTTCCC................................................. 23 2 1 6.00 6 0 5 0 0 1 0 0 0
......................................................................................AATACCGTAACGCGGCTGTTA................................................... 21 1 1 5.00 5 0 3 0 0 2 0 0 0
......................................................................................AATACCGTAACGCGGCTGTTCAA................................................. 23 1 1 4.00 4 1 3 0 0 0 0 0 0
......................................................................................AATACCGTAACGCGGCTGTTTTT................................................. 23 3 1 4.00 4 0 4 0 0 0 0 0 0
.......................................TGAGGGTAGTGAATGGCCTT................................................................................................... 20 2 2 3.50 7 4 0 3 0 0 0 0 0
......................................................................................AATACCGTAACGCGGCTGTTCT.................................................. 22 1 1 3.00 3 0 2 0 0 1 0 0 0
.....................................CCTGAGGGTAGTGAATGGCCA.................................................................................................... 21 3 1 3.00 3 1 0 2 0 0 0 0 0
......................................................................................AATACCGTAACGCGGCTGTC.................................................... 20 1 1 3.00 3 0 3 0 0 0 0 0 0
........................................GAGGGTAGTGAATGGCCT.................................................................................................... 18 2 4 2.50 10 10 0 0 0 0 0 0 0
......................................................................................AATACCGTAACGCGGCTGGTCA.................................................. 22 1 1 2.00 2 0 2 0 0 0 0 0 0
........................................................................................TACCGTAACGCGGCTGTTCAG................................................. 21 0 1 2.00 2 1 1 0 0 0 0 0 0
.......................................................................................ATACCGTAACGCGGCTGTTCCC................................................. 22 2 1 2.00 2 0 2 0 0 0 0 0 0
......................................CTGAGGGTAGTGAATGGCCA.................................................................................................... 20 2 1 2.00 2 2 0 0 0 0 0 0 0
...........................TTTTGAGCCGATTGAGGGTATTG............................................................................................................ 23 0 1 1.00 1 0 0 1 0 0 0 0 0
......................................................................................AATACCGTAACGCGGCTGTTTTA................................................. 23 3 1 1.00 1 0 1 0 0 0 0 0 0
..................................................AAAGGCCATGTTATTGCGTTGG...................................................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0 0
.......................................TGAGGGTAGTGAATGGCCTGGT................................................................................................. 22 3 1 1.00 1 1 0 0 0 0 0 0 0
......................................................................................AATACCGTAACGCGGCTGTTAG.................................................. 22 2 1 1.00 1 0 1 0 0 0 0 0 0
............................TTTGAGCCGATTGAGGGTATTG............................................................................................................ 22 0 1 1.00 1 0 0 0 1 0 0 0 0
......................................................................................AATACCGTAACGCGGCTGTTTAA................................................. 23 2 1 1.00 1 0 1 0 0 0 0 0 0
......................................................................................AATACCGTAACGCGGCTGTTCATC................................................ 24 2 1 1.00 1 0 1 0 0 0 0 0 0
.............................TTGAGCCGATTGAGGGTATTG............................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0
......................................................................................AATACCGTAACGCGGCTGGTCT.................................................. 22 2 1 1.00 1 0 1 0 0 0 0 0 0
......................................................................................AATACCGTAACGCGGCTGGGCA.................................................. 22 2 1 1.00 1 0 0 0 1 0 0 0 0
..............................TGAGCCGATTGAGGGTATTG............................................................................................................ 20 0 1 1.00 1 0 0 1 0 0 0 0 0
......................................................................................AATACCGTAACGCGGCTGTTCATCT............................................... 25 3 1 1.00 1 0 1 0 0 0 0 0 0
.....................................................................................AAATACCGTAACGCGGCTGTTCCC................................................. 24 3 1 1.00 1 0 1 0 0 0 0 0 0
......................................................................................AATACCGTAACGCGGCTGTTAT.................................................. 22 2 1 1.00 1 0 1 0 0 0 0 0 0
......................................................................................AATACCGTAACGCGGCTGTTCTC................................................. 23 2 1 1.00 1 0 1 0 0 0 0 0 0
.......................................................................................ATACCGTAACGCGGCTGTTTTT................................................. 22 3 1 1.00 1 0 1 0 0 0 0 0 0
......................................................................................AATACCGTAACGCGGCTGTTCAAAA............................................... 25 1 1 1.00 1 0 1 0 0 0 0 0 0
.....................................................................................CAATACCGTAACGCGGCTGTTCA.................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0
......................................................................................AATACCGTAACGCGGCTGGTT................................................... 21 2 1 1.00 1 0 0 0 1 0 0 0 0
..................................................AATGGCCATGTTTTTGCGTTGG...................................................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0 0
......................................................................................AATACCGTAACGCGGC........................................................ 16 0 1 1.00 1 0 1 0 0 0 0 0 0
.....................................ACTGAGGGTAGTGAATGGCC..................................................................................................... 20 2 1 1.00 1 1 0 0 0 0 0 0 0
..................................................AATGGCCATGTTATTGCGTTGGTT.................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0
..................................................AATGGCCATGTTATTGCGTTGGA..................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0 0
....................................................TGGCCATGTTATTGCGTTGG...................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0
.......................................................................................ATACCGTAACGCGGCTGTTCA.................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0
.......................................................................................ATACCGTAACGCGGCTGTT.................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0
......................................................................................AATACCGTAACGCGGCTGGT.................................................... 20 1 1 1.00 1 0 0 0 1 0 0 0 0
......................................................................................AATACCGTAACGCGGCTGTTCTTT................................................ 24 3 1 1.00 1 0 1 0 0 0 0 0 0
..................................................AATGGCCATGTTCTTGCGTTGG...................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 1
......................................................................................AATACCGTAACGCGGCTGTTCAAC................................................ 24 2 1 1.00 1 0 1 0 0 0 0 0 0
.......................................TGAGGGTAGTGAATGGCCTC................................................................................................... 20 3 3 0.67 2 1 0 1 0 0 0 0 0
..................................................AATCGCCATGTTTTTCCGTTGG...................................................................................... 22 3 3 0.33 1 0 0 0 1 0 0 0 0
.......................................CGAGGGTAGTGAATGGCCTT................................................................................................... 20 3 3 0.33 1 1 0 0 0 0 0 0 0
........................................................................................GACCGCAACGCGGCTGTACA.................................................. 20 3 4 0.25 1 1 0 0 0 0 0 0 0
.......................................GGAGGGTAGTGAATGGCCTT................................................................................................... 20 3 5 0.20 1 1 0 0 0 0 0 0 0
......................................GTGAGGGTAGTGAATGGCCT.................................................................................................... 20 3 8 0.13 1 1 0 0 0 0 0 0 0
......................................CCGAGGGTAGTGAATGGCC..................................................................................................... 19 3 12 0.08 1 1 0 0 0 0 0 0 0
.......................................TGAGGGTAATGAATGGCCTG................................................................................................... 20 3 13 0.08 1 1 0 0 0 0 0 0 0
......................................CTGAGGGTAGTGAATGCCC..................................................................................................... 19 3 20 0.05 1 0 0 1 0 0 0 0 0
......................................CTGAGGGTAGTGGATGGCC..................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0

Anti-sense strand reads

TATAAGAAGTCACTTTACACATGAGAAAAAACTCGGCTAACTCCCATAACTTACCGGTACAATAACGCAACCAAATAGGATATAGGTTATGGCATTGCGCCGACAAGTCTTGAAATTAGCATAAGATAGGGTTATAGGACACTCACAGGTTTTTTTAC

***********************************(((((((((...((((((((((.((((((...(((((............)))))...)))))).))))))))))..)))))))))...*********************************** 		Read size # Mismatch Hit Count Total Norm Total M040

female body

 GSM444067

head
.....................................GGACTCCCATCACTTACCGG..................................................................................................... 20 3 3 1.00 3 3 0
.......................................ACTCCCATCACTTACCGGAC................................................................................................... 20 3 10 0.50 5 5 0
......................................GACTCCCATCACTTACCGGA.................................................................................................... 20 3 7 0.29 2 2 0
........................................CTCCCATCACTTACCGGA.................................................................................................... 18 2 4 0.25 1 1 0
............................................................................................................................GATACGGGTGTAGGACACT............... 19 3 20 0.05 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
dp5 XL_group1e:8365733-8365890 - dps_55 confident ATATTCTTCAGTGAAATGTGTACTCTTTTTTGAGCCGATTGAGGGTATTGAATGGCCATGTTATTGCGTTGGTTTATCCTATATCCAATACCGTAACGCGGCTGTTCAGAACTTTAATCGTATTCTATCCCAATATCCTGTGAGTGTCCAAAAAAATG-------
droPer2 scaffold_13:198509-198662 + dpe_122 confident GTTTTCTGCAGTGAAATGTGTACTCTGTTTTGAGCCGATTGACGGTATTGAATGGCCATGTTTCTGCGTTGGTTTATCCCATATCCAATACCGTAACGCGGCTGTTCAGAACTTTAATCGTATTCTATCCCAATATCCTGTGAGT-----------TGATGATAC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
ATATTCTTCAGTGAAATGTGTACTCTTTTTTGAGCCGATTGAGGGTATTGAATGGCCATGTTATTGCGTTGGTTTATCCTATATCCAATACCGTAACGCGGCTGTTCAGAACTTTAATCGTATTCTATCCCAATATCCTGTGAGTGTCCAAAAAAATG-------SizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
..................................................AATGGCCATGTTATTGCGTTGG.............................................................................................22173.0073051013350280
......................................................................................AATACCGTAACGCGGCTGTTCA.........................................................22158.0058221000000350
......................................................................................AATACCGTAACGCGGCTGTTC..........................................................21139.003929130010230
......................................................................................AATACCGTAACGCGGCTGTTT..........................................................21113.00131101001090
......................................................................................AATACCGTAACGCGGCTGTTCC.........................................................2219.0091102000050
..................................................AATGGCCATGTTATTGCGTTG..............................................................................................2118.0080200033000
......................................................................................AATACCGTAACGCGGCTGTT...........................................................2016.0060000011040
......................................................................................AATACCGTAACGCGGCTGTTCCC........................................................2316.0061000000050
......................................................................................AATACCGTAACGCGGCTGTTA..........................................................2115.0052000000030
......................................................................................AATACCGTAACGCGGCTGTTCAA........................................................2314.0040100000030
......................................................................................AATACCGTAACGCGGCTGTTTTT........................................................2314.0040000000040
......................................................................................AATACCGTAACGCGGCTGTTCT.........................................................2213.0031000000020
......................................................................................AATACCGTAACGCGGCTGTC...........................................................2013.0030000000030
........................................................................................TACCGTAACGCGGCTGTTCAG........................................................2112.0020100000010
.......................................................................................ATACCGTAACGCGGCTGTTCCC........................................................2212.0020000000020
...........................TTTTGAGCCGATTGAGGGTATTG...................................................................................................................2311.0010000001000
......................................................................................AATACCGTAACGCGGCTGTTTTA........................................................2311.0010000000010
......................................................................................AATACCGTAACGCGGCTGTTAG.........................................................2211.0010000000010
............................TTTGAGCCGATTGAGGGTATTG...................................................................................................................2211.0010000010000
......................................................................................AATACCGTAACGCGGCTGTTCATC.......................................................2411.0010000000010
.............................TTGAGCCGATTGAGGGTATTG...................................................................................................................2111.0010000001000
..............................TGAGCCGATTGAGGGTATTG...................................................................................................................2011.0010000001000
......................................................................................AATACCGTAACGCGGCTGTTCATCT......................................................2511.0010000000010
......................................................................................AATACCGTAACGCGGCTGTTAT.........................................................2211.0010000000010
......................................................................................AATACCGTAACGCGGCTGTTCTC........................................................2311.0010000000010
.......................................................................................ATACCGTAACGCGGCTGTTTTT........................................................2211.0010000000010
.....................................................................................CAATACCGTAACGCGGCTGTTCA.........................................................2311.0010100000000
......................................................................................AATACCGTAACGCGGC...............................................................1611.0010000000010
..................................................AATGGCCATGTTATTGCGTTGGTT...........................................................................................2411.0010000001000
..................................................AATGGCCATGTTATTGCGTTGGA............................................................................................2311.0010000001000
....................................................TGGCCATGTTATTGCGTTGG.............................................................................................2011.0010000001000
.......................................................................................ATACCGTAACGCGGCTGTTCA.........................................................2111.0010000000010
.......................................................................................ATACCGTAACGCGGCTGTT...........................................................1911.0010100000000
......................................................................................AATACCGTAACGCGGCTGTTCTTT.......................................................2411.0010000000010
......................................................................................AATACCGTAACGCGGCTGTTCAAC.......................................................2411.0010000000010
droPer2
GTTTTCTGCAGTGAAATGTGTACTCTGTTTTGAGCCGATTGACGGTATTGAATGGCCATGTTTCTGCGTTGGTTTATCCCATATCCAATACCGTAACGCGGCTGTTCAGAACTTTAATCGTATTCTATCCCAATATCCTGTGAGT-----------TGATGATACSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
..................................................AATGGCCATGTTTCTGCGTTGG.............................................................................................22133.003301151016
..................................................AATGGCCATGTTTCTGCGTTG..............................................................................................2117.007000133
......................................................................................AATACCGTAACGCGGCTGTT...........................................................2014.004000013
......................................................................................AATACCGTAACGCGGCTGTTT..........................................................2112.002010010
........................................................................................TACCGTAACGCGGCTGTTCAGA.......................................................2212.002010010
......................................................................................AATACCGTAACGCGGCTGTTC..........................................................2112.002000002
......................................................................................AATACCGTAACGCGGCTGTTTT.........................................................2211.001000001
................................................TGAATGGCCATGTTTCTGCGTTGG.............................................................................................2411.001000001
......................................................................................AATACCGTAACGCGGCTGTTCG.........................................................2211.001100000
......................................................................................AATACCGTAACGCGGCTGTTCT.........................................................2211.001000100
.......................................................................................ATACCGTAACGCGGCTGTTCCC........................................................2211.001010000
................................................TGAATGGCCATGTTTCTGCGTT...............................................................................................2211.001000001

Generated: 10/20/2015 at 07:05 PM