ID:

dps_533

 Coordinate:

2:13945101-13945251 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [Dpse\GA30162:15]; CDS [Dpse\GA30162-cds]; intron [Dpse\GA30162-in]; intron [Dpse\GA30162-in]; intron [Dpse\GA30162-in]; intron [Dpse\GA30162-in]; intron [Dpse\GA30162-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AACAACAAAATGAAATGTCCAAATCCGCATTGGGATTGCACTTTATCGAGGTAGATTCTATATGTATTCCACAAATCATACATATTTAGTGTTTTTTTGTGTGTGTGTGTTTTTCGTTGCACTACTAACAGCACTACTGCTCCCCTCCCCTGCGTCTGCCGCTGCTCCCCTTCCCCCTGCCCATCATCAAGAACTTGCCACATAAATAACCAGATGAGTCATTCGGTGCGGCTCTCGGGCTTCTCCAAAAA
**************************************************((((.((((((((((((..........)))))))).((((((.....(((..(((.((((........)))))))..)))))))))...............(((.....))).((.............)).........)))).))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
...............TGTCCAAATCCGCATTGGGATT...................................................................................................................................................................................................................... 22 0 1 1.00 1 1
.............................TTGGGATTGCACTTTATCGA.......................................................................................................................................................................................................... 20 0 1 1.00 1 1
..........................GCATTGTGATTGCCCTTTA.............................................................................................................................................................................................................. 19 2 6 0.17 1 1

Anti-sense strand reads

TTGTTGTTTTACTTTACAGGTTTAGGCGTAACCCTAACGTGAAATAGCTCCATCTAAGATATACATAAGGTGTTTAGTATGTATAAATCACAAAAAAACACACACACACAAAAAGCAACGTGATGATTGTCGTGATGACGAGGGGAGGGGACGCAGACGGCGACGAGGGGAAGGGGGACGGGTAGTAGTTCTTGAACGGTGTATTTATTGGTCTACTCAGTAAGCCACGCCGAGAGCCCGAAGAGGTTTTT
**************************************************((((.((((((((((((..........)))))))).((((((.....(((..(((.((((........)))))))..)))))))))...............(((.....))).((.............)).........)))).))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 GSM343916
embryo
 V112
male body		 SRR902010
ovaries
...........................................................................................................................CGTTTGTCGTGCTGACGAGG............................................................................................................ 20 3 5 0.20 1 0 0 1 0
.............................................................................................................................ATTGTCGTGATGAGGAGA............................................................................................................ 18 2 7 0.14 1 1 0 0 0
......................................................................TGGTAAGTAGGTATAAATCA................................................................................................................................................................. 20 3 7 0.14 1 0 1 0 0
..............................................................................................................................................GGGATGGGACGTAGGCGGCGA........................................................................................ 21 3 7 0.14 1 0 1 0 0
.............................................................................................................................TTTGTCGTGATGACGAGA............................................................................................................ 18 2 7 0.14 1 1 0 0 0
.......................................................................................................................................................................................................................................GAGAGCCCGGACAGGTTT.. 18 2 8 0.13 1 1 0 0 0
......................................................................................................................................................................GAGTAAGGGGGACGGGTAG.................................................................. 19 2 9 0.11 1 1 0 0 0
..................................................................................................................................................................ACGAGGCAAAGGGTGACGGGT.................................................................... 21 3 13 0.08 1 0 1 0 0
.............................................................................................................AAAACGCAACGAGATGAT............................................................................................................................ 18 2 20 0.05 1 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 2:13945132-13945382 - dps_533 AACA-ACA---AC----AACAGCAACCACATCATCTACAGCAACAACAACA---ACAACAGGCACCACAATTACACC------------------------AACAA----CA---ACAACA---GCAACAACAAAATGAAATGTCCAAA---------------------------------------------------------------------------TCCGCA---T------------TGG----GATTGCACTTTATCGAGGTAGATTCTATATGTATTCCACAA-----------ATCATAC----------------ATATT--------TAGT------GT--T------------------------------------TTTTTG-TGTGTGTGTG--------TTTTTCGTTGCACTACTAA--------CAGCA-CTA--------------------------------------------------------------------------------------------------------------------------CTGCTCC-C-------------------C-TCCCCTGCGTCTGCCGCTG---C-TCCCC
droPer2 scaffold_0:6498576-6498825 + AACA-ACA---AC----AACAGCAACCACATCATCTACAGCAACAACAACA---ACAACAACAGCAGGCACCACAAT------------------------TACA----CCAACAACAACA---GCAACAACAAAATGAAATGTCCAAA---------------------------------------------------------------------------TCCGCA---T------------TGG----GATTGCACTTTATCGAGGTAGATTCTATATGTATTCCACAA-----------ATCATAC----------------ATATT--------TAGT------GTATTTT--------------------------------------T-----------GTGTGTGTGTTTTTCGTTGCACTACTAA--------CAGCA-CTA--------------------------------------------------------------------------------------------------------------------------CTGCTCC-C----------------------CCCCTGCGTCTGCCGCTG---C-TCCCC
droWil2 scf2_1100000004909:5546401-5546630 + AAGACGCA---GC----AGCAGCAACAACATCAGCAGCAGCAGCAACAGCA---GCAGCAGCAGCAGCAACAACAAC------------------------AACA-GC--CACCTAC---------------------CAA------TGCCGCCA--TCTCAG--TC-----------------T------------------------------------------------A------------AGC----AATATCGATTTGTTCAGATATATAATAT------AGATA-----------------------------------------TATCTCTC----------TTGTTTC--------------------------------------T-----------GTTTCTTTGTTGGTCATTTAATGG-------CCTGGCATGG-C--------------------------------------------------------------------------AAATTT--------------------------TAGCTTC-------------------CCTC-------------------TCTCTGTCTCTGTCTCTG---TCTCTCT
droVir3 scaffold_12875:20356929-20357189 + TACA-GCA---GC----AATAGCAACAACAACAACAACAATATCAACAACA---GCAACTGCAACAACAATTATCAGTTCATCAACAACATCAACTACAACAACA-ACATCAACTACAACA---ACAACAACAACTCGA--------------------------ACAAGC---------------------------A----------------ACTGTTCTTTTTGGA---A------------TAG----TACTGCATTTTATTCCAATTGAATGTTT------AA--------------------------------------------------------TACGTGTTTTTTAC-------------------------------------------------GT-------------------------------------------GTCGCATTTAA--------------TGTTGTCTCA---------------------------------------------------------------------C---TGTCTC-----CCACTCTC---CCAC---------------TCTCTCTCTGCC------TCTGTGTC-TTCCC
droMoj3 scaffold_6680:15769711-15769890 + ACGA-ACA---AC----AACAACAACAACAACAACAGCAGCAACAGCAGCA---ACA---ACAGCCGCAATGACAACAGCAACAACAGT------------------------------------CAA-----GAAAACAATGCACAAA--------GCCAGGGC-------------------TAAAAG----------------------------------------------------------------------AGACATAGATATAGACAT-AT------ATAT-ATA--TATATATA----------------------------TATATATA-----------TATGTAA--------------------G----------------TG-TGTGTGT--GT------------------------------------------------GTGTGT--------------G--------------------------------------------------------------------------------------------------------------------------------------------------------TGT
droGri2 scaffold_10026:3242-3499 + CAA---CA---AC----AACAGCAACAACAGCAACAACAGCAGCAACAACA---ACAGCAGCAACAGCAA----------------------------------------------------------CAGCAACAAGAGCGACAAAAG---------------------------------------------------------------------------TCGACA---T------------CGA----CAATCAAAATCAACGCAATTAATGCTCA------TCCGGCCA--------------------------------------AAGTTGCA----CAGGGCTGTTATTC-------------------------------------------------AA-------------------------------------------TTTTC--ATAC--------------GTTTGCC--AGAGT-----------------TGCCAGGTCACATGTCAAATGTGGTGTGCGAGTCATGCTTACATTTGTA--------AGTCTCCTACTCCTCC-T-------------------CTTGCTCCGCT------TCTGCTGC-T-TCT
droAna3 scaffold_12943:4413849-4414141 - CAG---CATCAGC----AGCAA---CAGCAACAGCAGCAGCAGCAACAGCA---TCAGCAGCAGCAGCAATAGCAGCAGCAGCAACAGCAGCAGCAGCAATAGCA-GC----------------------------------------A--------GCAGCAAC-------------------AGCAGCAGCAACAGCAATAGCAGCATCTGCA---------GCAGCATCTTTAGCTTCAGCATCTGAGGCAGTTGCATTTT-------------------CCATTGCAGCT-----------TTCTTAC----------------CTGCT--------TTTT------TT--T------------------------------------TTTATA-TATTCCTTTT--------TTTTTTGTTAAAAAAGCAA--------CAGCAGCTG----C-----T--------------ACTCCACTTC---------------------------------------------------------------------GAGATACTTC---------------CCCACCT------------TC-------------CGCTTTTG---A-TTCTC
droBip1 scf7180000396708:996310-996533 + CAG---CA---AC----AACAA---CAACAA------------------------------------------------------------CA-------------------------ACAGCAACATCAACAAAATGAAATGTCCAAG---------------------------------------------------------------------------TCCGCT---T------------TGG----GACTGCATTTCATCGAGGTAGATTCTATAT--ATTCCACCAAAC------------------------------------AACTTATT----TTCGTCAT--TT-------------------TTGCTGCGCTTGTGT-CTTGTATCTTGT----GT--------CTTGCGTGT--------------------------GTTGCACATGTGTGTACTAGTAGTTG----------------------------------------------TATTGC--------------------------AAACTGCCCA---------------CTAACCA---------CAACT----------------AGCTG---CC-TTGC
droKik1 scf7180000302639:2653412-2653635 - CAC----------------CAA---CAACAT------------------------------------------------------------CAACAACAGCACCA-ACAACAATTACAACA---ACAGCAGCAGAACGAAATGTCCAAG---------------------------------------------------------------------------TCCGCT---T------------TGG----GACTGCACTTCATCGAGGTAGATTCTAT------TGTTTT----------------------------------------AACATATT----TTTGTCA------AACTTTTAACTTTAACTTTAAC----------------TG-TGTTTGTTTGT--------GTTGCGTTA---------------------------GTGCACATGT--------------TTTTGA-------------------------------------------------------------------------AAATTGCCCA---------------CTAACAAAGAAAAAAAAAACA----------------AGCTC---CCG----
droFic1 scf7180000454073:3612353-3612542 - AGCA-A------C----ACCAA---CCACTA------------------------------------------------------------CA----------------------ACAACA---GCAGCAGCAGAATGAGATGTCCAAG---------------------------------------------------------------------------TCCGCG---T------------TGG----GACTGCATTTCATCGAGGTAGATTCTAT------TGCCCG----------------------------------------AACCTATT----TTCGTCTTGTG----------------------------------CCTTGTGG-CTTGTGTTTGT-------------------------------------------GCTGCACATA------CTCGTA--TGTTTGAG------------------------------------------------------------------------AAAATGCCCA---------------CTAACAA---------CAACA----------------TGCAA---CCGCTTC
droEle1 scf7180000491023:388095-388261 + AGCA-GCA---AC----AACAACAACAACAACAACAACAACAACAACAATA---ACAATAACAACAACAACAACAAC------------------------AACAA----CAACAACAGCA---ACCGCAACAAA----GGCAGCCAA---------------------------------------------------------------------------------------------------------TGCTGTAATTTATTAACTT----------------TGTGC----------------------------------------AAATT---GACT------C-------------------------------TCTTT----TTTTTG-TATTTATTTGT--------TTTTCATTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000780007:323710-323878 - AGCA-A------C----ACCAA---CCACAT------------------------------------------------------------CA-------------------------ACA---GCAGCAGCAGAATGAAATGTCCAAG---------------------------------------------------------------------------TCCGCT---T------------TGG----GACTGCATTTTATCGAGGTAGATTCTAT------TCGTCA----------------------------------------AACTTATT----TTTGTCTTGTGTTC-------------------------------------------------GT-------------------------------------------GTTGCACATGT--------------GTTTGAA--AAATA-----------------TGCC--------------------------------------------CAAATGCCCA---------------CTAACAA------------CA----------------TGCTA---C----GC
droBia1 scf7180000302075:2014771-2014968 - AGCA-GCT---AC----ACCAA---CCACAT------------------------------------------------------------CAACA-------------------GCAGCA---GCAGCAGCAGAATGAGATGTCCAAG---------------------------------------------------------------------------TCCGCA---T------------TGG----GACTGCATTTCATCGAGGTAGATTCTAT------TCCTCA----------------------------------------AACTTATT----TCTGTCTTGTGTTC-------------------------------------------------GT-------------------------------------------GCTGCACATGT--------------GTTTGTT--AGAAAAAAAAAAAAAAAGAAAG----------------AAAAGA--------------------------AAAATGCCCA---------------CTAA---------------CA----------------TGCTA---CCGCTTC
droTak1 scf7180000415700:302353-302500 + AACA-A-------------CAA---CCACAT------------------------------------------------------------CA-------------------------ACA------GCAGCAGAATGAAATGTCCAAG---------------------------------------------------------------------------TCCGCA---T------------TGG----GACTGCATTTCATCGAGGTAGATTCTAT------TCCTCAAA--------------------------------------AACCTATT----TCTGTCTTGTGTTC---------------------------------------------GTTCGT-------------------------------------------GCTGCACATGT--------------GTTTGAA---------------------------------------------------------------------------------A---------------CTAA---------------CA----------------TGCTA---CCA----
droEug1 scf7180000409787:845308-845472 - AGCA-A------C----ACCAA---CCACAT------------------------------------------------------------CA-------------------------ACA---GCAGCAGCAGAATGAAATGTCCAAG---------------------------------------------------------------------------TCCGCT---T------------TGG----GGCTGCATTTCATCGAGGTAGATTCTAT------TCCTCA----------------------------------------AACTTATT----TTTGTCTTGTGTTT-------------------------------------------------GT-------------------------------------------GTTGCACATGT--------------GTTTGAA--A---------------------------------------------------------------------AGATTGCCCA---------------CTAACAA------------CA----------------TGCTA---CCGCTTC
dm3 chr3R:24736829-24736992 + AGCA-A------C----ACCAA---CCACAT------------------------------------------------------------CA-------------------------ACA------GCAGCAGAATGAAATGTCCAAG---------------------------------------------------------------------------TCCGCA---T------------TGG----GGCTGCACTTCATCGAGGTAGATTCTAT------TCCTCC----------------------------------------AATTTATT----TCTGTCTTGTTTTC-------------------------------------------------GT-------------------------------------------GCTGCACATGT--------------GTTTGAACCA---------------------------------------------------------------------AAAATGCCCA---------------CTAACAA------------CA----------------CGCTG---CCGCTTC
droSim2 3r:24098368-24098531 + AGCA-A------C----ACCAA---CCACAT------------------------------------------------------------CA-------------------------ACA------GCAGCAGAATGAAATGTCCAAG---------------------------------------------------------------------------TCCGCA---T------------TGG----GGCTGCACTTCATCGAGGTAGATTCTAT------TCCTCC----------------------------------------AATTTATT----TCTGTCTTGTTTTC-------------------------------------------------GT-------------------------------------------GCTGCACATGT--------------GTTTGAACCA---------------------------------------------------------------------AAAATGCCTA---------------CTAACAA------------CA----------------CGCTA---CCGCTTC
droSec2 scaffold_4:3600093-3600256 + AGCA-A------C----ACCAA---CCACAT------------------------------------------------------------CA-------------------------ACA------GCAGCAGAATGAAATGTCCAAG---------------------------------------------------------------------------TCCGCA---T------------TGG----GGCTGCACTTCATCGAGGTAGATTCTAT------TCCTCC----------------------------------------AATTTATT----TCTGTCTTGTTTTC-------------------------------------------------GT-------------------------------------------GCTGCACATGT--------------GTTTGAACCA---------------------------------------------------------------------AAAATGCCTA---------------CTAACAA------------CA----------------CGCTA---CCGCTTC
droYak3 3L:3535486-3535713 + CAG---CAGCAAC----AGCAA---CTGCAACAGCAGCAGCAGCAGCAAGATCGGCGGTGGCATCATTATCATGGCC------------------------ACGAT----CATCGACAAG---------------------------TGGCGAACAATTGAA---AAGTGCTTTTGCTTTGCTCTTGGGGGAACACGTG----------------CCGGGT---------------------------------------CTTTTTGGA-----TTTTTAT------TTCTTA----------------------------------------TACTTCTG--------TTTC------------------------------------------------------AA--------TTTTTTTTTGGACTGCTAT--------CG--------------------------------------ATCT---------------------------------------------------------------------TGAGTGCCGG---------------TGTACCT------------GT----------------CGCTG---CCGC-CA
droEre2 scaffold_4690:12275715-12275955 + AAAA-A--ACTAACTGCAACAACTACAACAT---CAACAATAACAACAACATCAACAGCAACAACAAGAACTACAAC------------------------A----------------ATA---ACAACAACAGCACGA--------------------------ACGCACA----------------------------------------------------CTCGCT---T------------TAA----CCT---------------CAAATTCTGTATGTACTGCTCAA-----------AACGCAAAAACCAAAATCGAGAAATATC--------TGTT------GTGTTTTT------------------------------------TTC-TAAACGTTAC--------CTTTTCCCCTCATCATTAAACGCTTGGAATCG-CTT--------------------------------------------------------------------------------------------------------------------------TTGCCCT-C-------------------T-CCC------------TCTA---A-G--TC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
AACA-ACA---AC----AACAGCAACCACATCATCTACAGCAACAACAACA---ACAACAGGCACCACAATTACACC------------------------AACAA----CA---ACAACA---GCAACAACAAAATGAAATGTCCAAA---------------------------------------------------------------------------TCCGCA---T------------TGG----GATTGCACTTTATCGAGGTAGATTCTATATGTATTCCACAA-----------ATCATAC----------------ATATT--------TAGT------GT--T------------------------------------TTTTTG-TGTGTGTGTG--------TTTTTCGTTGCACTACTAA--------CAGCA-CTA--------------------------------------------------------------------------------------------------------------------------CTGCTCC-C-------------------C-TCCCCTGCGTCTGCCGCTG---C-TCCCCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................................ATTACACC------------------------AACAA----CA---ACAACA---GCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
.............................................................................................................................................TGTCCAAA---------------------------------------------------------------------------TCCGCA---T------------TGG----GATT.........................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
.........................................................................................................................................................................................................................................T------------TGG----GATTGCACTTTATCGA.............................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.ACA-ACA---AC----AACAGCAACCACATCATCTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010001000000
.............................................ACAACA---ACAACAGGCACCACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010100000000
droPer2
AACA-ACA---AC----AACAGCAACCACATCATCTACAGCAACAACAACA---ACAACAACAGCAGGCACCACAAT------------------------TACA----CCAACAACAACA---GCAACAACAAAATGAAATGTCCAAA---------------------------------------------------------------------------TCCGCA---T------------TGG----GATTGCACTTTATCGAGGTAGATTCTATATGTATTCCACAA-----------ATCATAC----------------ATATT--------TAGT------GTATTTT--------------------------------------T-----------GTGTGTGTGTTTTTCGTTGCACTACTAA--------CAGCA-CTA--------------------------------------------------------------------------------------------------------------------------CTGCTCC-C----------------------CCCCTGCGTCTGCCGCTG---C-TCCCCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........................................................................................................................................................................................................................................T------------TGG----GATTGCACTTTATCGAG............................................................................................................................................................................................................................................................................................................................................................................2111.001000001
.........................................AACAACAACA---ACAACAACAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051010000
droWil2
AAGACGCA---GC----AGCAGCAACAACATCAGCAGCAGCAGCAACAGCA---GCAGCAGCAGCAGCAACAACAAC------------------------AACA-GC--CACCTAC---------------------CAA------TGCCGCCA--TCTCAG--TC-----------------T------------------------------------------------A------------AGC----AATATCGATTTGTTCAGATATATAATAT------AGATA-----------------------------------------TATCTCTC----------TTGTTTC--------------------------------------T-----------GTTTCTTTGTTGGTCATTTAATGG-------CCTGGCATGG-C--------------------------------------------------------------------------AAATTT--------------------------TAGCTTC-------------------CCTC-------------------TCTCTGTCTCTGTCTCTG---TCTCTCTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..................GCAGCAACAACATCAGCAGCAGCAGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2780.13100010
......................................AGCAGCAACAGCA---GCAGCAGCAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.10200020
..................GCAGCAACAACATCAGCAGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100001
...............................................................GCAGCAACAACAAC------------------------AACA-G...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05101000
.......................AACAACATCAGCAGCAGCAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100010
.......................................GCAGCAACAGCA---GCAGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100010
...................................AGCAGCAGCAACAGCA---GC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05100010
................................AGCAGCAGCAGCAACAGCA---GCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05100010
.................AGCAGCAACAACATCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05100010
............................CATCAGCAGCAGCAGCAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100001
.....................GCAACAACATCAGCAGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05100010
..........................................GCAACAGCA---GCAGCAGCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100001
.......................................................CAGCAGCAGCAGCAACAACAAC------------------------AACA-G...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05101000
...................................AGCAGCAGCAACAGCA---GCAGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05101000
......................CAACAACATCAGCAGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100010
droVir3
TACA-GCA---GC----AATAGCAACAACAACAACAACAATATCAACAACA---GCAACTGCAACAACAATTATCAGTTCATCAACAACATCAACTACAACAACA-ACATCAACTACAACA---ACAACAACAACTCGA--------------------------ACAAGC---------------------------A----------------ACTGTTCTTTTTGGA---A------------TAG----TACTGCATTTTATTCCAATTGAATGTTT------AA--------------------------------------------------------TACGTGTTTTTTAC-------------------------------------------------GT-------------------------------------------GTCGCATTTAA--------------TGTTGTCTCA---------------------------------------------------------------------C---TGTCTC-----CCACTCTC---CCAC---------------TCTCTCTCTGCC------TCTGTGTC-TTCCCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....................................................................................................CAACA-ACATCAACTACAACA---ACAACAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2830.672001100000000000000000000000000000000000000000000000000000000000
..........................................................................................................ACATCAACTACAACA---ACAACAACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2430.672002000000000000000000000000000000000000000000000000000000000000
................................................................................ATCAACAACATCAACTACAACAACA-................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.501001000000000000000000000000000000000000000000000000000000000000
................................................................................ATCAACAACATCAACTACAACAACA-A...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2620.501000100000000000000000000000000000000000000000000000000000000000
.................................................................................TCAACAACATCAACTACAACAACA-................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.501000100000000000000000000000000000000000000000000000000000000000
..................................................................................CAACAACATCAACTACAACAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2250.402000200000000000000000000000000000000000000000000000000000000000
....................................................................................................CAACA-ACATCAACTACAACA---AC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2250.402000200000000000000000000000000000000000000000000000000000000000
....................................................................................................CAACA-ACATCAACTACAACA---ACAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2540.251001000000000000000000000000000000000000000000000000000000000000
..................................................................................CAACAACATCAACTACAACAACA-AC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2540.251001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................CA-ACATCAACTACAACA---ACAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2240.251001000000000000000000000000000000000000000000000000000000000000
.....................................................................................CAACATCAACTACAACAACA-AC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2240.251001000000000000000000000000000000000000000000000000000000000000
....................................................................................ACAACATCAACTACAACAACA-AC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2340.251000100000000000000000000000000000000000000000000000000000000000
......................................................................................................ACA-ACATCAACTACAACA---ACAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2340.251000100000000000000000000000000000000000000000000000000000000000
.....................................................................................................AACA-ACATCAACTACAACA---A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2050.201001000000000000000000000000000000000000000000000000000000000000
...................................................................................AACAACATCAACTACAACAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2050.201001000000000000000000000000000000000000000000000000000000000000
............................................................................................................ATCAACTACAACA---ACAACAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2180.131001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................TCAACTACAACA---ACAACAACAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22100.101001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................AACA---ACAACAACAACTCGA--------------------------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.102001000000000000000100000000000000000000000000000000000000000000
.............................................................................................................TCAACTACAACA---ACAACAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20110.091001000000000000000000000000000000000000000000000000000000000000
......................CAACAACAACAACAACAATATC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22180.061000000000000000001000000000000000000000000000000000000000000000
..................ATAGCAACAACAACAACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051000000000000000000100000000000000000000000000000000000000000000
......CA---GC----AATAGCAACAACAAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051001000000000000000000000000000000000000000000000000000000000000
.................................................................................................CAACAACA-ACATCAACTACAACG---T.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000000000010000000000000000000000000000000000000000000
droMoj3
ACGA-ACA---AC----AACAACAACAACAACAACAGCAGCAACAGCAGCA---ACA---ACAGCCGCAATGACAACAGCAACAACAGT------------------------------------CAA-----GAAAACAATGCACAAA--------GCCAGGGC-------------------TAAAAG----------------------------------------------------------------------AGACATAGATATAGACAT-AT------ATAT-ATA--TATATATA----------------------------TATATATA-----------TATGTAA--------------------G----------------TG-TGTGTGT--GT------------------------------------------------GTGTGT--------------G--------------------------------------------------------------------------------------------------------------------------------------------------------TGTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................AACAACAACAGCAGCAACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051100000
...................................AGCAGCAACAGCAGCA---ACA---AC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051100000
.......................AACAACAACAACAGCAGCAACAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000010
...........................ACAACAACAGCAGCAACAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000010
.....................................CAGCAACAGCAGCA---ACA---AC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000010
.........................CAACAACAACAGCAGCAACAGCAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051010000
droGri2
CAA---CA---AC----AACAGCAACAACAGCAACAACAGCAGCAACAACA---ACAGCAGCAACAGCAA----------------------------------------------------------CAGCAACAAGAGCGACAAAAG---------------------------------------------------------------------------TCGACA---T------------CGA----CAATCAAAATCAACGCAATTAATGCTCA------TCCGGCCA--------------------------------------AAGTTGCA----CAGGGCTGTTATTC-------------------------------------------------AA-------------------------------------------TTTTC--ATAC--------------GTTTGCC--AGAGT-----------------TGCCAGGTCACATGTCAAATGTGGTGTGCGAGTCATGCTTACATTTGTA--------AGTCTCCTACTCCTCC-T-------------------CTTGCTCCGCT------TCTGCTGC-T-TCTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
............................................AACAACA---ACAGCAGCAACAGCAA----------------------------------------------------------CAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.05110
droAna3
CAG---CATCAGC----AGCAA---CAGCAACAGCAGCAGCAGCAACAGCA---TCAGCAGCAGCAGCAATAGCAGCAGCAGCAACAGCAGCAGCAGCAATAGCA-GC----------------------------------------A--------GCAGCAAC-------------------AGCAGCAGCAACAGCAATAGCAGCATCTGCA---------GCAGCATCTTTAGCTTCAGCATCTGAGGCAGTTGCATTTT-------------------CCATTGCAGCT-----------TTCTTAC----------------CTGCT--------TTTT------TT--T------------------------------------TTTATA-TATTCCTTTT--------TTTTTTGTTAAAAAAGCAA--------CAGCAGCTG----C-----T--------------ACTCCACTTC---------------------------------------------------------------------GAGATACTTC---------------CCCACCT------------TC-------------CGCTTTTG---A-TTCTCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................................................................................................GCAATAGCA-GC----------------------------------------A--------GCAGCAAC-------------------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2030.331010000
..G---CATCAGC----AGCAA---CAGCAACAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2330.331100000
..................................................................GCAATAGCAGCAGCAGCAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2030.331010000
....................................................................AATAGCAGCAGCAGCAACAGCAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2440.251010000
..................................................................................................AATAGCA-GC----------------------------------------A--------GCAGCAAC-------------------AGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................2440.251010000
........TCAGC----AGCAA---CAGCAACAGCAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2350.201010000
.................................................................................................................................................................CAAC-------------------AGCAGCAGCAACAGCAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................2250.201000001
..........................AGCAACAGCAGCAGCAGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.153000003
..........................................GCAACAGCA---TCAGCAGCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2090.111000010
.................................................................AGCAATAGCAGCAGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18120.081010000
................................AGCAGCAGCAGCAACAGCA---TCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22120.081000001
...............................................................................................AGCAATAGCA-GC----------------------------------------A--------GCAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18120.081010000
...........................................CAACAGCA---TCAGCAGCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19170.061010000
............................................AACAGCA---TCAGCAGCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18180.061010000
....................AA---CAGCAACAGCAGCAGCAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051010000
.............................................................................................................................................................GCAGCAAC-------------------AGCAGCAGCAACAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051010000
........................................................................GCAGCAGCAGCAACAGCAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000010
......................................................................................................GCA-GC----------------------------------------A--------GCAGCAAC-------------------AGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000010
..................................................................................................................................................................AAC-------------------AGCAGCAGCAACAGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000001
....................................................................................................................................................A--------GCAGCAAC-------------------AGCAGCAGCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051010000
...........GC----AGCAA---CAGCAACAGCAGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000001
..........................AGCAACAGCAGCAGCAGCAACAGCA---....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051010000
droBip1
CAG---CA---AC----AACAA---CAACAA------------------------------------------------------------CA-------------------------ACAGCAACATCAACAAAATGAAATGTCCAAG---------------------------------------------------------------------------TCCGCT---T------------TGG----GACTGCATTTCATCGAGGTAGATTCTATAT--ATTCCACCAAAC------------------------------------AACTTATT----TTCGTCAT--TT-------------------TTGCTGCGCTTGTGT-CTTGTATCTTGT----GT--------CTTGCGTGT--------------------------GTTGCACATGTGTGTACTAGTAGTTG----------------------------------------------TATTGC--------------------------AAACTGCCCA---------------CTAACCA---------CAACT----------------AGCTG---CC-TTGCSizeHit CountTotal NormTotal
No Reads
droKik1
CAC----------------CAA---CAACAT------------------------------------------------------------CAACAACAGCACCA-ACAACAATTACAACA---ACAGCAGCAGAACGAAATGTCCAAG---------------------------------------------------------------------------TCCGCT---T------------TGG----GACTGCACTTCATCGAGGTAGATTCTAT------TGTTTT----------------------------------------AACATATT----TTTGTCA------AACTTTTAACTTTAACTTTAAC----------------TG-TGTTTGTTTGT--------GTTGCGTTA---------------------------GTGCACATGT--------------TTTTGA-------------------------------------------------------------------------AAATTGCCCA---------------CTAACAAAGAAAAAAAAAACA----------------AGCTC---CCG----SizeHit CountTotal NormTotal
No Reads
droFic1
AGCA-A------C----ACCAA---CCACTA------------------------------------------------------------CA----------------------ACAACA---GCAGCAGCAGAATGAGATGTCCAAG---------------------------------------------------------------------------TCCGCG---T------------TGG----GACTGCATTTCATCGAGGTAGATTCTAT------TGCCCG----------------------------------------AACCTATT----TTCGTCTTGTG----------------------------------CCTTGTGG-CTTGTGTTTGT-------------------------------------------GCTGCACATA------CTCGTA--TGTTTGAG------------------------------------------------------------------------AAAATGCCCA---------------CTAACAA---------CAACA----------------TGCAA---CCGCTTCSizeHit CountTotal NormTotal
No Reads
droEle1
AGCA-GCA---AC----AACAACAACAACAACAACAACAACAACAACAATA---ACAATAACAACAACAACAACAAC------------------------AACAA----CAACAACAGCA---ACCGCAACAAA----GGCAGCCAA---------------------------------------------------------------------------------------------------------TGCTGTAATTTATTAACTT----------------TGTGC----------------------------------------AAATT---GACT------C-------------------------------TCTTT----TTTTTG-TATTTATTTGT--------TTTTCATTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
AGCA-A------C----ACCAA---CCACAT------------------------------------------------------------CA-------------------------ACA---GCAGCAGCAGAATGAAATGTCCAAG---------------------------------------------------------------------------TCCGCT---T------------TGG----GACTGCATTTTATCGAGGTAGATTCTAT------TCGTCA----------------------------------------AACTTATT----TTTGTCTTGTGTTC-------------------------------------------------GT-------------------------------------------GTTGCACATGT--------------GTTTGAA--AAATA-----------------TGCC--------------------------------------------CAAATGCCCA---------------CTAACAA------------CA----------------TGCTA---C----GCSizeHit CountTotal NormTotal
No Reads
droBia1
AGCA-GCT---AC----ACCAA---CCACAT------------------------------------------------------------CAACA-------------------GCAGCA---GCAGCAGCAGAATGAGATGTCCAAG---------------------------------------------------------------------------TCCGCA---T------------TGG----GACTGCATTTCATCGAGGTAGATTCTAT------TCCTCA----------------------------------------AACTTATT----TCTGTCTTGTGTTC-------------------------------------------------GT-------------------------------------------GCTGCACATGT--------------GTTTGTT--AGAAAAAAAAAAAAAAAGAAAG----------------AAAAGA--------------------------AAAATGCCCA---------------CTAA---------------CA----------------TGCTA---CCGCTTCSizeHit CountTotal NormTotal
No Reads
droTak1
AACA-A-------------CAA---CCACAT------------------------------------------------------------CA-------------------------ACA------GCAGCAGAATGAAATGTCCAAG---------------------------------------------------------------------------TCCGCA---T------------TGG----GACTGCATTTCATCGAGGTAGATTCTAT------TCCTCAAA--------------------------------------AACCTATT----TCTGTCTTGTGTTC---------------------------------------------GTTCGT-------------------------------------------GCTGCACATGT--------------GTTTGAA---------------------------------------------------------------------------------A---------------CTAA---------------CA----------------TGCTA---CCA----SizeHit CountTotal NormTotal
No Reads
droEug1
AGCA-A------C----ACCAA---CCACAT------------------------------------------------------------CA-------------------------ACA---GCAGCAGCAGAATGAAATGTCCAAG---------------------------------------------------------------------------TCCGCT---T------------TGG----GGCTGCATTTCATCGAGGTAGATTCTAT------TCCTCA----------------------------------------AACTTATT----TTTGTCTTGTGTTT-------------------------------------------------GT-------------------------------------------GTTGCACATGT--------------GTTTGAA--A---------------------------------------------------------------------AGATTGCCCA---------------CTAACAA------------CA----------------TGCTA---CCGCTTCSizeHit CountTotal NormTotal
No Reads
dm3
AGCA-A------C----ACCAA---CCACAT------------------------------------------------------------CA-------------------------ACA------GCAGCAGAATGAAATGTCCAAG---------------------------------------------------------------------------TCCGCA---T------------TGG----GGCTGCACTTCATCGAGGTAGATTCTAT------TCCTCC----------------------------------------AATTTATT----TCTGTCTTGTTTTC-------------------------------------------------GT-------------------------------------------GCTGCACATGT--------------GTTTGAACCA---------------------------------------------------------------------AAAATGCCCA---------------CTAACAA------------CA----------------CGCTG---CCGCTTCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....................................................................................................................................................................................................................................................................................................................................................T----TCTGTCTTGTTTTC-------------------------------------------------GT-------------------------------------------GCTGCACATG...........................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................CAGCAGAATGAAATGTCCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................TGG----GGCTGCACTTCATCGAGAC..........................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................T------------TGG----GGCTGCACTTCATCGA.............................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................TT----TCTGTCTTGTTTTC-------------------------------------------------GT-------------------------------------------GCTG.................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................TCCGCA---T------------TGG----GGCTGCACTTCATCGAGA...........................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................ATGTCCAAG---------------------------------------------------------------------------TCCGCA---T------------TGG----GGC..........................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................T-------------------------------------------GCTGCACATGT--------------GTTTGA......................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................TGG----GGCTGCACTTCATCGAGGTAGATT.....................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................TCCAAG---------------------------------------------------------------------------TCCGCA---T------------TGG----GA...........................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................CTTGTTTTC-------------------------------------------------GT-------------------------------------------GCTGCACATG...........................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................CCAAG---------------------------------------------------------------------------TCCGCA---T------------TGG----GGCTGCACT....................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................AATGTCCAAG---------------------------------------------------------------------------TCCGCA---T------------TGG----GGCTGCAC.....................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................CGCA---T------------TGG----GGCTGCACTTCATCGAG............................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................TGTTTTC-------------------------------------------------GT-------------------------------------------GCTGCACATGT--------------GT..........................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...................................................................................................................................................................................................................................GCA---T------------TGG----GGCTGCACTTCATCG..............................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................TTTATT----TCTGTCTTGTTTTC-------------------------------------------------GT-------------------------------------------GCTG.................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................AAG---------------------------------------------------------------------------TCCGCA---T------------TGG----GGCTGCACTTC..................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................G---------------------------------------------------------------------------TCCGCA---T------------TGG----GGCTGCACT....................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................AGAATGAAATGTCCAAG---------------------------------------------------------------------------TC........................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...................CAA---CCACAT------------------------------------------------------------CA-------------------------ACA------GCAGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
droSim2
AGCA-A------C----ACCAA---CCACAT------------------------------------------------------------CA-------------------------ACA------GCAGCAGAATGAAATGTCCAAG---------------------------------------------------------------------------TCCGCA---T------------TGG----GGCTGCACTTCATCGAGGTAGATTCTAT------TCCTCC----------------------------------------AATTTATT----TCTGTCTTGTTTTC-------------------------------------------------GT-------------------------------------------GCTGCACATGT--------------GTTTGAACCA---------------------------------------------------------------------AAAATGCCTA---------------CTAACAA------------CA----------------CGCTA---CCGCTTCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................................................................................................................................................G---------------------------------------------------------------------------TCCGCA---T------------TGG----GGCTGCACTTC..................................................................................................................................................................................................................................................................................................................................................................................2212.00200200000000000000
droSec2
AGCA-A------C----ACCAA---CCACAT------------------------------------------------------------CA-------------------------ACA------GCAGCAGAATGAAATGTCCAAG---------------------------------------------------------------------------TCCGCA---T------------TGG----GGCTGCACTTCATCGAGGTAGATTCTAT------TCCTCC----------------------------------------AATTTATT----TCTGTCTTGTTTTC-------------------------------------------------GT-------------------------------------------GCTGCACATGT--------------GTTTGAACCA---------------------------------------------------------------------AAAATGCCTA---------------CTAACAA------------CA----------------CGCTA---CCGCTTCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................................................................................................................................................................................................................................................................................................................................................................GTTTTC-------------------------------------------------GT-------------------------------------------GCTGCACATGT--------------GTTTGA......................................................................................................................................................2511.0011000
................................................................................................................................................................................................................................TCCGCA---T------------TGG----GGCTGCACTTCATCGAG............................................................................................................................................................................................................................................................................................................................................................................2711.0010010
droYak3
CAG---CAGCAAC----AGCAA---CTGCAACAGCAGCAGCAGCAGCAAGATCGGCGGTGGCATCATTATCATGGCC------------------------ACGAT----CATCGACAAG---------------------------TGGCGAACAATTGAA---AAGTGCTTTTGCTTTGCTCTTGGGGGAACACGTG----------------CCGGGT---------------------------------------CTTTTTGGA-----TTTTTAT------TTCTTA----------------------------------------TACTTCTG--------TTTC------------------------------------------------------AA--------TTTTTTTTTGGACTGCTAT--------CG--------------------------------------ATCT---------------------------------------------------------------------TGAGTGCCGG---------------TGTACCT------------GT----------------CGCTG---CCGC-CASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.................AGCAA---CTGCAACAGCAGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21120.08100100000000
..........................TGCAACAGCAGCAGCAGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05101000000000
...............................CAGCAGCAGCAGCAGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05101000000000
...........................GCAACAGCAGCAGCAGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05101000000000
droEre2
AAAA-A--ACTAACTGCAACAACTACAACAT---CAACAATAACAACAACATCAACAGCAACAACAAGAACTACAAC------------------------A----------------ATA---ACAACAACAGCACGA--------------------------ACGCACA----------------------------------------------------CTCGCT---T------------TAA----CCT---------------CAAATTCTGTATGTACTGCTCAA-----------AACGCAAAAACCAAAATCGAGAAATATC--------TGTT------GTGTTTTT------------------------------------TTC-TAAACGTTAC--------CTTTTCCCCTCATCATTAAACGCTTGGAATCG-CTT--------------------------------------------------------------------------------------------------------------------------TTGCCCT-C-------------------T-CCC------------TCTA---A-G--TCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................................AATAACAACAACATCAACAGCAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
............................................................................................................................................................................................................................................................................................................................CAAAATCGAGAAATATC--------TGTT------GTGT.......................................................................................................................................................................................................................................................................................2511.0010000100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGCTTGGAATCG-CTT--------------------------------------------------------------------------------------------------------------------------TTGCCCT-C-------------------T-.............................2611.0010000001
..........................................................................AAC------------------------A----------------ATA---ACAACAACAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18180.0610100000

Generated: 05/17/2015 at 10:37 PM