ID:

dps_532

 Coordinate:

2:13927591-13927838 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-7.9 -7.8

Flybase annnotation

exon [Dpse\GA12391:6]; CDS [Dpse\GA12391-cds]; exon [Dpse\GA12391:8]; CDS [Dpse\GA12391-cds]; exon [Dpse\GA12391:7]; CDS [Dpse\GA12391-cds]; intron [Dpse\GA12391-in]

No Repeatable elements found

Sense Strand Reads

######################################################################################################################################################################------------------------------------------------------------------------------------------------------------------------------------##################################################
CAACACCACCTTCCTCCATAGCCACAAAGTAGTTAACATTGATTACCAGGGTAAGGCCGTAACCGCCGTAAGCGCACCTCTAATGTCCAGCACTAACTGCATCCACCACAACACACTAACCATCCACACTGCGATGCCGCGACTCAGCGCAATGACCACTGCATGACCAGCCTTGTACCGCTTGTAATTCTCGCTCTGCCTGCTTGTAATCCGCCTCCGCTGGTGCTGGTATCGCCTCTTCCATGTCCACCCATGTCCCATGTCCAAGTCTCTATGTGCCTCTGTGTGCCTTCCGTAGAGTCGCCCAGCACAACGCAGCCCCTGTCAGCGGCCGCAGCAACAGCAGCA
****************************************************************************************************************************************************************************************************************************.(((((.(((((.....(((.((((.............))))...))).......))))).....)))))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 M059
embryo
............................................................................................................................................................................................................................TGGTGCTGGTATCGCCTCTTCCAT........................................................................................................ 24 0 1 1.00 1 1 0
...................................................................................................................................................................................................................................................................................GTGCCTCTGTGTGCCTTCCGTAG.................................................. 23 0 1 1.00 1 1 0
.......................................................................................................................CCATCCACACTGCGATGCCGC................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0
.......................................................................................................................................................................................................................................................................................................................AACGCAGCCCCTGTCAGCGGCC............... 22 0 1 1.00 1 0 1
.......................................................................................................................................................ATGACCCATGCATGACCTG.................................................................................................................................................................................. 19 3 20 0.05 1 1 0

Anti-sense strand reads

GTTGTGGTGGAAGGAGGTATCGGTGTTTCATCAATTGTAACTAATGGTCCCATTCCGGCATTGGCGGCATTCGCGTGGAGATTACAGGTCGTGATTGACGTAGGTGGTGTTGTGTGATTGGTAGGTGTGACGCTACGGCGCTGAGTCGCGTTACTGGTGACGTACTGGTCGGAACATGGCGAACATTAAGAGCGAGACGGACGAACATTAGGCGGAGGCGACCACGACCATAGCGGAGAAGGTACAGGTGGGTACAGGGTACAGGTTCAGAGATACACGGAGACACACGGAAGGCATCTCAGCGGGTCGTGTTGCGTCGGGGACAGTCGCCGGCGTCGTTGTCGTCGT
**************************************************.(((((.(((((.....(((.((((.............))))...))).......))))).....)))))........**************************************************************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 V112
male body		 GSM444067
head
 M059
embryo
 GSM343916
embryo
...............................................................................................................................................................................................GCGAGACGGACGAACGTTA.......................................................................................................................................... 19 1 1 1.00 1 1 0 0 0 0
...............................................................................................................................................................................................................TTACGCGGAGGCGACCACGA......................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0
..............................................................................................................................................................................................................TTTACGCGGAGGCGACCACGA......................................................................................................................... 21 2 2 1.00 2 1 1 0 0 0
GTAGTGGTGGAAGGAGGC.......................................................................................................................................................................................................................................................................................................................................... 18 2 9 0.78 7 4 3 0 0 0
..................................................................................................................TGATCGATGGGTGTGACGCT...................................................................................................................................................................................................................... 20 3 2 0.50 1 0 0 1 0 0
GTAGGGGTGGAAGGAGGTA......................................................................................................................................................................................................................................................................................................................................... 19 2 8 0.50 4 4 0 0 0 0
.................................................................................................................................................................................................................ACGCGGAGGCGACCACGACT....................................................................................................................... 20 2 3 0.33 1 1 0 0 0 0
...................................................................................................................................................................................................................GCGGAGGCGACCACGACTCT..................................................................................................................... 20 2 3 0.33 1 0 1 0 0 0
.TAGGGGTGGAAGGAGGTAT........................................................................................................................................................................................................................................................................................................................................ 19 2 4 0.25 1 1 0 0 0 0
.TTGTTGTGGAAGGGGGTAT........................................................................................................................................................................................................................................................................................................................................ 19 2 5 0.20 1 0 0 0 1 0
..................................................................................................................................................................................................................CGCGGAGGCGACCACGACT....................................................................................................................... 19 2 6 0.17 1 1 0 0 0 0
GTTGGGGTGGAAGGAGGC.......................................................................................................................................................................................................................................................................................................................................... 18 2 7 0.14 1 1 0 0 0 0
...................................................................................................................GCTTGGTGGCTGTGACGCTA..................................................................................................................................................................................................................... 20 3 7 0.14 1 1 0 0 0 0
......................................................................................................GGTGCTGTTGTGTGAGTGGT.................................................................................................................................................................................................................................. 20 2 8 0.13 1 1 0 0 0 0
..................................................................................................................TGATGGATAGGTGTGACGGT...................................................................................................................................................................................................................... 20 3 9 0.11 1 0 0 1 0 0
..TGGGGTGGAAGGAGGTGT........................................................................................................................................................................................................................................................................................................................................ 18 2 10 0.10 1 1 0 0 0 0
..............................................................................................TACACGTAGGTGGAGTTGTG.......................................................................................................................................................................................................................................... 20 3 14 0.07 1 1 0 0 0 0
............................................................................................................................................................ATGACCTACTGGTAGGAAC............................................................................................................................................................................. 19 3 14 0.07 1 0 0 0 0 1
.............................................................................................................................................................................................................................................................................................CTCGGAACGCGTCTCAGC............................................. 18 3 20 0.05 1 0 0 0 1 0
.........................................................................................................................................................................................GAAAGAGCGAGACGGACG................................................................................................................................................. 18 2 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 2:13927541-13927888 + dps_532 CAA---CACCACCT---TCCTC--C--ATAGCCACAAAGTAGTTAACATTGATTAC---CAGGG----TAAGGCCGT---AACCGCCGT----AAGCGCACCTC-----TAA-------TGTCCA-GCACTAACTGCATCCA---CC---------------AC-AACACACTA------ACCA---TCCACACTGCGATGCC--GCGACTCAGCGCA-----------------------ATGACCACTGCATGACC--------------------------------------------------------A------------------------------------------------------------------GCC-----TT----GTACCGCT-TGTAATTCTCGCTCT-----GC----CT---GCTTGTAATCCGCCTC-----CG-------CT-GGTG-CTGGTATCGCCTC----T-------------------TCC--ATGTCCACCCA--------TGTC-C----------CATGT-----CCAAGTCTCT--ATG--TG---CCTCTGTGTGCCTTCCGTAGAGTCGCCCAGCACAACGCAGCCCCTGTCAGCGGCC-----------G------CA----------GCAAC---AG---CAGCA
droPer2 scaffold_0:6516389-6516738 - CAA---CACCACCT---TCCTC--C--ATAATCACAAAGTAGTTAACATTGATTAC---CAGGG----TAAGGCCGT---AACCGCCGT----AAGCGCACCTC-----TAA-------TGTCCA-GCACTAACTGCATCCA---CC---------------AC-AACACACTA------ACCA---TCCACACTGCGATGAC--GCGACTCAGCGCA-----------------------ATGACCACTGCATGACC--------------------------------------------------------A------------------------------------------------------------------GCC-----TT----GTACCGCT-TGTAATTCTCGCTCT-----GC----CT---GCTTGTA------ATC-----CG--------T-GGTG-CTGGTATCGCCTC----T-------------------TCC--ATGTCCACCCA--------TGTC-C----------CATGT-----CCAAGTCTCT--ATG--TG---CCTCTGTGTGCCTTCCGTAGAGTCGCCCAGCACAACGCAGCCCCTGTCAGCGGCCGCAGCAACA--G------CA----------GCAAC---A---GCAGCA
droWil2 scf2_1100000004921:761356-761689 + CAG---CGCCGCCTTACTTCAT--C--ATAAACATAAAGTAGTTAGCGTTGATTATAATCCGGG----TAAGGTCTC---C-ATAC------------------AAT------------CCACTT-GTCCTAGCTAACTCTCCCACAT-CTAATC--GCACTC-----------------GCCA---TC-GC--------ACC--------------------------T---CCATCTA-------ACTGCATGTTGT-GCACAC----A------C--------------------ACACAC--------ACA---------------------------------C-------------AC----------A------C----GTTTT----GGTTACTA-ACTCAT-TTCGTGTC-----CC----A-----TCTGTG------TTTTACCCTG-------TCCGGTG-TTGGAGTCTTTGT----T-------------------AACCATTTAGT--TCATACCCA--AAAA-C--------AAAAAGT-----CCTTGTCTCA--ATGTGAG---T-------CGCCTTCCTTAGAATCGCCCACAACCACTCAGCAGGCAATTTCGGAT-----------G------C----------------------------G
droVir3 scaffold_12963:8859308-8859705 + CAA---CAACAACA---ACCCAACCATGTGAGCCTGATGCAGC-AGCAGCAGCTGC---CAGGCGCCGTACTGCC------GCCGCCGCACATGGGCATGCCGCCCAG-CTATGG----CAGTCA-CCATCAGCAGCAGCAG---CAGGCACAGCAGCAAGCCC----------AACAGCAGCA---GC------------AGCAGC-AACAGGCGCA-----------------------ACAGCAGCAGAGCGCAC--------------------------------------------------------CGCCCTATATGTCCAGCAGCAAACATCAGGCAAGC-------------GCTCAGCTCAAC-TCCTCGCCG-----CA----GTAT--------------CGTGCA-----CCGT--T-----TCCACA------ACT-----CT--------C-GCCA-CAGATGTCGCCGC----G-------------------TCC--G------------CCCACCATGT-CGCCGCATCC-ACA----------AATGTCG--CCG--CGTCCAGTGGGCGTGTCGCCCGCCAAGCCACCACAAACAGCACAGCAGCAGC-AGCAGGT-----------G------CA----------ACAGC---AG---CAGCA
droMoj3 scaffold_6540:26126115-26126498 + CCATCAAAGCGTCT---ATGTC--C--ATAATCACAAAGTAGTTAGCGTTGACTAC---CAGGG----TAAGGCTTT---G-CCAG------------------TGTCCTAATGCACCACAGCAA-CCACTAACTGCATCCA---TTCACTAACTGACTGATCC----------ACCAAT--CACCA-------------AAC-------A------------------CCGCTCACTCACACACCTGTTGCATGCCA---------------CGCACTTGT--------------------------------------------------------------C--GCACCCCTCGCACCCGCCACTCTCCAC-ACTTCGCTT-----TT----GTTT--TC-TGTTTTTTCCGC--T-----TT--GTCT---ACCTATA------AA------CGTCGGGTATCTGGTT-TTGGG-----------------------TATTGAGTCTC---------GGCCACATTAACCAAGC-C----------GCTGCTTGCTCCAAATCTGT--ATA-------------T---------GTAGAGTCGCCCACAACCACGCAGCTGCCGCC---CATT-----------TCGGATGCA----------CCAGCGCCCAGT---GAA
droGri2 scaffold_14830:5996651-5997012 + AA------ACGTCT---ATATC--C--ATAATCACAAAGTAGTTAGCGTTGACTAC---CAGGG----TAAGGCTTT---G-CCAG------------------TGTCCTAATGC----C-ACCAGCCACTAACTGCATCCA---TTCACTAACTGACTAACCC----------ACCAGCACCA---CC------------A-----------------------------------------GCCTCTCACATACACACCTGATGCATGTCAAGCACGTGT--------------------------------------------------------------CAAGCACCCCTCGCATCC----CTCTGCACTATTTTGCTT-----TC----GTTTTGTG-TGTGTTTTCTGCTTT-----TT----G---------TA------C-------TGTCGGGTGTCGGTTG-TCGGGATTCCTG-----T--G-------TATCGAGTGTT---------AGCTTCATTAATCAGGC-C----------GCTGC---CTCCAAATCTCT--AT------------------------ATAGAGTCACCCACCACCACGCAGTTGCCAAC---CATT-----------GTGGATGCA----------C------------CAGCG
droAna3 scaffold_13340:7835945-7836258 + CAC---GAACACCT---TGCTC--C--ACAGCCAAAAAGTAGCTAACGTTGACTAC---CAGGG----TAAGGTCCC---A-TTGC---------------------------------TGA-------CTAACTGCACCCA---CCCTCTAATACGGCACAAGA---------------ACCA---TC------------AC--------------------------T---CCACTCATTTGGCCACTGCATGATCT-CTGCAC----T------C------------------------CTGCACCTATGCAT-----------------------------------------------------------------CCTTTG--------TTTTAGTT-TGTAATC-------------------------------------CTT-----CG-------CT-GGTG-CTGGGACCACCTT----T------------------------CCGAGTAACCAAACCCAAAAAGC-C----------GTAGC-----CCTAGTCTCT--ATG---------TGTGTGTGCCTTTCGTAGAGTCGCCAACCACCACGCAGCTGCTGACACCGAAT-----------C------CA----------CCAGC---CACT---CCA
droBip1 scf7180000396708:1013219-1013533 - CAC---GAACACCT---TCCTC--C--ACAGCCAAAAAGTAGCTAACGTTGACTAC---CAGGG----TAAGGTCCC---A-TTGC---------------------------------TGA-------CTAACTGCACCCA---CCCTCTAATACGGCACAAGA---------------ACCA---TC------------AC--------------------------T---CCACTCATTTGGCCACTGCATGATCT-CTGCAC----T------C------------------------CTGCACCTATGCAT----------------------------------------------------------CC-----TGT-----TT----GTTTAGTT-TATAATC-------------------------------------CTT-----CG-------CT-GGTG-CTGGGACCACCTT----T------------------------CCGAGTAACCAAACCGAAAAAGC-C----------GTAGC-----CCCAGTCTCT--ATG---------TGTGTGTGCCTTTCGTAGAGTCGCCAACCACCACTCAGCTGCTGACACCGAAT-----------C------CA----------CCAGC---CATT---CCA
droKik1 scf7180000302461:964994-965312 - CAA---CAACACCC---TCATC--C--ACAGCCACAAAGTAGTTAACATTGACTAC---CAGGG----TAAGGCCCC---A-TCGG---------------------------------TGACCA-GCACTAACTGCATCCGCCACACTCTAACCCACTGCCAC------------------------------------GAC--------------------------ACTACCTTCCATTTGGCCACTGCATGAACACCTC---------CTGCACCTG------CACCTGCACCTGCACCT--------GCA------------------------------------------------------------------CCTC----TT----TTTTAATT-TGTAACCTCTG-------------------------TC------CCC-----CG-------CT-GGTGCCTGGGATCGCCTC----T-------------------GTAA-CTGAGTAACCA--------CAGC-C----------TTAGC---CCCCAAGTCTCT--ATG--TG---AGTGTGTGTGCCTTTCGTAGAGTCGCCCACAACAACT------------------------------------------------GCAAC---G---GCAGCC
droFic1 scf7180000453800:1892168-1892553 - CTC---CAACACCT---TCCTC--C--ACAGCCACAAAATAGTTAATGTCGACTAC---CAGGG----TAAGGACCCACCA-TCGC---------------------------------TGACCA-GCACTAACTGCATCCACCACACGCTAACCCATCACTACA---------------ACCA---CC------------AC-----TACCACTACAACCACAAGAAAA---CCAACCATTTGGCCACTGCATGATCGCCTC---------CAGCACCT----------------------CT--------GCA------------------------------------------------------------------CCTTTGT-TTTTTTGTTTAGTTATGTAATTTCTGCCCTGCT--CT----GTGTTTTTTGTA------ATC-----CG-------CT-GGTG-CTGGGACCACCTC--TCT-------------------GCCCTCCGAGTAACAA------AAAAGC-C----------ATAGT---CTCCTAGTCTCTCTATGAGTG---TGTGTGTGTGCCTTTCGTAGAGTCGCCCACCACCACGCAGCAGCTTTCCACCACTCCG------ATC------C---------------C---CAAT---CTG
droEle1 scf7180000491008:14912-15280 - CCATCCCAACACCT---TCCTC--C--ACAGCCACAAAGTAGTTAGCGCCGACTAC---CAGGG----TAAGGCCCC---A-TCGA---------------------------------TGACCA-GCACTAACTGCATCCA---CACGCTAACCCACCACCAC------------CACA--AAACC-------------AAC--------------------------ACCACCACCCATTTGGCCACTGCATGACCGCCTGCAACATCTACAGCA------------------------CCT--------GCA------------------------------------------------------------------CCT-----TT----GTTTAGTT-TGTAATCTCTGCCCTGCACTCC----G-----TCTGTA------CTC-----CG-------CT-GGTG-CTGGGAACATCAAACACCGAATAACGAACACCCACCCCCCC-CCGAGTAACCA--------AAGCCC----------AAAGC-----CCTAGTCTCT--ATGTGTG---TGTGTGTGTGCCTTTCGTAGAGTCGCCCACAACGACGCAGCTGACCAC-TCCGAT-----------C------C-AG-----------------------GAT
droRho1 scf7180000779169:189469-189806 + C-----------CT---TCCTC--C--AAAGCCACAAAGTAGTTAACATTGACTAC---CAGGG----TAAGGCCCC---A-TCGC---------------------------------TGACCA-GCACTAACTGCATCCA---CACGCTAACACACCACCAC------------------------------------AAC--------------------------A---CCACCCATTTGGCCACTGCATGATCGCCTGCACCATCTACGGCA------------------------CCT--------GCA------------------------------------------------------------------CCT-----TT----GTTTAGTT-TGTAATCTATGCCCT-----CC----G-----TTTGTA------CTC-----TG-------CT-GGTG-CTGGGAACACCGAACTCCGAATACCGAACACCCAT--GCCC-CCGAGTAACCA--------AAGC-C----------AAAGT-----CCTAGTCTCT--ATG--TG---TGTGTGTGTGCCTTTCGTAGAGTCGCCCACAACAACGCAGCAGCTTTCCTCGGGT-----------C------C-AACCAC----------------------
droBia1 scf7180000302075:5272808-5273137 - CCATTCAAACACAT---TTCTT--C--ATAGCCACAAAGTAGTTAACGTTGACTAC---CAGGG----TAAGGCCCC---A-TCGC---------------------------------TGACCA-GCACTAACTGCATCCACACCAAGCTAACCCAACACCAC------------------------------------CAC--------------------------ACCACCAACCATTTGGCCACTGCATGATCGCCTGCACCACC------A------------------------CCT--------GCAC----------------------------------------------------------CA-----TCT-----TT----GTTTAGTT-TGTAATCTCTGCCCT-----CT----GT---GTTTGTC------CTC-----CG-------CTCGGTG-CTGGGATCACCTC----T-------------------GCCCCGCGAGTAACCA--------AAGT-C----------CTAGT-----TGTAGTCACT--ATG---------TGTGTGTGCCTTTCTTAGAGTCGCCCACAACCACGCAGCTGATAACGTCGGCT-----------C------C-AA-----------------------GTG
droTak1 scf7180000415765:1202368-1202677 + C-----------CT---TCCTT--C--ATAGCCACAAAGTAGCTAACGTTGACTAC---CAGGG----TAAGGACCC---A-TCGC---------------------------------TGACCA-GCACTAACTGCATCCA---CACGCTAACCCAACACCAC------------------------------------AAG-----------------------TACA---CCAACCATTTGGCCACTGCATGATCGCCTGCAT------------------------------CTTCACCT--------GCA------------------------------------------------------------------CCT-----TT----GTTTAGTT-TGTAATCTCTGCCCT-----CC----GT---TTTTGTC------CTC-----TG-------CTCGGTG-CTGGGATAACCA---------------------------------AAAAAACA--------AAGC-C----------ATAGT-----CCTAGTCTCT--ATGTGTG---TGTGTGTGTGCCTTTCGTAGAGTCGCCCACAACAACGCAGCTGATTTCATCGGTT-----------C------C-AGCTGC----------------------
droEug1 scf7180000409798:675602-675945 + AA------ACACCT---TCCTT--C--ATAGCCACAAAGTAGTTAACGTTGACTAC---CAGGG----TAAGGCCCC---A-TCGC---------------------------------TGACCA-GCACTAACTGCATCCA---CACGCTAACCCATCACCAA------------------------------------AAC--------------------------ACGAACACCCATTTGGCCACTGCATGATCGCCTGCACCATCTCCAGCACCCG------CACCTGCACCTGCACCT--------GCA------------------------------------------------------------------CCT-----TT----GTTTAGTT-TGTAATCTTCGCTCC-----CC----G-----TCTGTC------TAT-----CG-------CTTGGTG-CTGGGATCACCTC----T-------------------GCCCCACGAGTAACAA----CAAAAAGC-C----------ATAGT-----CCTAGTCTTT--ATG-------TGTGTGTGTGCCTTTCGTAGAGTCACCCACAACAACGCAGTTGCAGTCATCGGTT-----------C------C-AAC-------------------------
dm3 chr3R:19722293-19722613 - C-----------CT---TCCTT--C--ATAGCCACAAAGTAGTTAACTTTGACTAT---CAGGG----TAAGGACCC---A-TCGC---------------------------------TGACCA-GCACTAATTGCATCCA---CACGCTAACCCACCAACAC------------------------------------AAC--------------------------A---CCACCCGTTTGGCGACTGCATGATCGCCTGCACCACCTACAGCAC------------------ATGTACCT--------GCA------------------------------------------------------------------CCT-----TT----GTTTAGTT-TAGAATCTCTACCCT-----TC----G-----TCTGTA------CTT-----CG-------CTGGGTG-CTGGGATCACCAT----T-------------------GCCC-CCGAGTAACCA--------AATT-C----------GTAGT-----CCTAGTTTCT--ATGAGTG---TGTGTGTGTGCCTTTCGTAGAGTCGCCCACCACAACGCAGCTGCTTTCATCAGTT-----------C------C-A---------------------------
droSim2 3r:19259434-19259769 - dsi_26256 C-----------CT---TCCTT--C--ATAGCCACAAAGTAGTTAACTTTGACTAC---CAGGG----TAAGGCCCC---A-TCGC---------------------------------TGACCA-GCACTAATTGCATCCA---CTCGCTAACCCACCAACAC------------------------------------AAC--------------------------A---CCACCCATTTGGCTACTGCATGATCGCCTGCACCACCTACAGCAC------------------CTGCACCT--------GCA------------------------------------------------------------------CCT-----TT----GTTTAGTT-TATAATCTCTATCCT-----TC----G-----TCTGTA------CTT-----CG-------CTGGGTG-CTGGGATCACCAT----T-------------------GCCC-CCGAGTAACCA--------AATT-C----------GTAGT-----CCTAGTTTCT--ATGAGTG---TGTGTGTGTGCCTTTCGTAGAGTCGCCCACGACAACGCAGCTGCTTTCATCAGTT-----------C------C-AACCGCTCAA------------GCAACG
droSec2 scaffold_0:20064171-20064506 - C-----------CT---TCCTT--C--ATAGCCACAAAGTAGTTAACTTTGACTAC---CAGGG----TAAGGCCCC---A-TCGC---------------------------------TGACCA-GCACTAATTGCATCCA---CACACTAACCCACCAACAC------------------------------------AAC--------------------------A---CCACCCATTTGGGTACTGCATGATCGCCTGCACCACCTACAGCAC------------------CTGCACCT--------GCA------------------------------------------------------------------CCT-----TT----GTTTAGTT-TATAATCTCTACCCT-----TC----G-----TCTGTA------CTT-----CG-------CTGGGTG-CTGGGATCACCAT----T-------------------GCCC-CCGAGTAACCA--------AATT-C----------GTAGT-----CCTAGTTTCT--ATGAGTG---TGTGTGTGTGCCTTTCGTAGAGTCGCCCACGACAACGCAGCTGCTTTCATCAGTT-----------C------C-AACCGCTCAA------------GCAACG
droYak3 3R:20614513-20614857 - --------ACACCT---TCCTT--C--ATAGCCACAAAGTAGTTAACTTTGACTAC---CAGGG----TAAGGCCCC---T-TCGC---------------------------------TGACCA-GCACTAATTGCATCCA---CACGCTAACCCACCAACAC------------------------------------AAC--------------------------ACCACCACCCATTTGGCTACTGCATGATCGCTTGCACCACCTCCAGCACCTGCACCCGCACCCGCACCTGCACCT--------GCA------------------------------------------------------------------CCT-----TT----ATTTAGTT-TATAATCTCTACCCT-----CC----G-----TCTGTA------CTT-----TG-------CTGGGTG-CTGGGATCACCAT----T-------------------GCCC-CCGAGTAACCA--------AATT-C----------GTAGT-----CCTAGTTTCT--ATGAGTG---TGTGTGTGTGCCTTTCGTAGAGTCGCCCACCACAACGCAGCTGCTTACATCAGTT-----------C------C-A---------------------------
droEre2 scaffold_4820:8335916-8336242 + C-----------CT---TCCTT--C--ATAGCCACAAAGTAGTTAACTTTGACTAC---CAGGG----TAAGGCCCC---A-TCGC---------------------------------TGACCA-GCACTAATTGCATCCA---CACGCTAACCCACCAACAC------------------------------------AAC--------------------------A---CCACCCATTTGGCTACTGCATGATCGCCTGCACCACCTCCAGCACCTG------------CACCTGCACCT--------GCA------------------------------------------------------------------CCT-----TT----GTCTAGTT-TATAATCTGTACCCT-----CC----G-----TCTGTA------CTT-----CG-------CTGGGTG-CTGGGATCACCAT----T-------------------GCCC-CCGAGTAACCA--------AATT-C----------GTAGT-----CCTAGTTTCT--ATGAGTG---TGTGTGTGTGCCTTTCGTAGAGTCGCCTACCACAACGCAGCAGCATACATCAGTT-----------C------C-A---------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
CAA---CACCACCT---TCCTC--C--ATAGCCACAAAGTAGTTAACATTGATTAC---CAGGG----TAAGGCCGT---AACCGCCGT----AAGCGCACCTC-----TAA-------TGTCCA-GCACTAACTGCATCCA---CC---------------AC-AACACACTA------ACCA---TCCACACTGCGATGCC--GCGACTCAGCGCA-----------------------ATGACCACTGCATGACC--------------------------------------------------------A------------------------------------------------------------------GCC-----TT----GTACCGCT-TGTAATTCTCGCTCT-----GC----CT---GCTTGTAATCCGCCTC-----CG-------CT-GGTG-CTGGTATCGCCTC----T-------------------TCC--ATGTCCACCCA--------TGTC-C----------CATGT-----CCAAGTCTCT--ATG--TG---CCTCTGTGTGCCTTCCGTAGAGTCGCCCAGCACAACGCAGCCCCTGTCAGCGGCC-----------G------CA----------GCAAC---AG---CAGCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-GGTG-CTGGTATCGCCTC----T-------------------TCC--AT........................................................................................................................................................................2411.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--TG---CCTCTGTGTGCCTTCCGTAG...................................................................................2311.0010100000000
.....................................................................................................................................................................................CCA---TCCACACTGCGATGCC--GC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGCAGCCCCTGTCAGCGGCC-----------.....................................2211.0010010000000
droPer2
CAA---CACCACCT---TCCTC--C--ATAATCACAAAGTAGTTAACATTGATTAC---CAGGG----TAAGGCCGT---AACCGCCGT----AAGCGCACCTC-----TAA-------TGTCCA-GCACTAACTGCATCCA---CC---------------AC-AACACACTA------ACCA---TCCACACTGCGATGAC--GCGACTCAGCGCA-----------------------ATGACCACTGCATGACC--------------------------------------------------------A------------------------------------------------------------------GCC-----TT----GTACCGCT-TGTAATTCTCGCTCT-----GC----CT---GCTTGTA------ATC-----CG--------T-GGTG-CTGGTATCGCCTC----T-------------------TCC--ATGTCCACCCA--------TGTC-C----------CATGT-----CCAAGTCTCT--ATG--TG---CCTCTGTGTGCCTTCCGTAGAGTCGCCCAGCACAACGCAGCCCCTGTCAGCGGCCGCAGCAACA--G------CA----------GCAAC---A---GCAGCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........................................GTTAACATTGATTAC---CAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAGCACAACGCAGCCT............................................................1830.331000010
droWil2
CAG---CGCCGCCTTACTTCAT--C--ATAAACATAAAGTAGTTAGCGTTGATTATAATCCGGG----TAAGGTCTC---C-ATAC------------------AAT------------CCACTT-GTCCTAGCTAACTCTCCCACAT-CTAATC--GCACTC-----------------GCCA---TC-GC--------ACC--------------------------T---CCATCTA-------ACTGCATGTTGT-GCACAC----A------C--------------------ACACAC--------ACA---------------------------------C-------------AC----------A------C----GTTTT----GGTTACTA-ACTCAT-TTCGTGTC-----CC----A-----TCTGTG------TTTTACCCTG-------TCCGGTG-TTGGAGTCTTTGT----T-------------------AACCATTTAGT--TCATACCCA--AAAA-C--------AAAAAGT-----CCTTGTCTCA--ATGTGAG---T-------CGCCTTCCTTAGAATCGCCCACAACCACTCAGCAGGCAATTTCGGAT-----------G------C----------------------------GSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGT-----CCTTGTCTCA--ATGTGAG---T-------...............................................................................................2211.00100001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-C--------AAAAAGT-----CCTTGTCTCA--ATGTGAG---T-------C..............................................................................................2811.00100010
droVir3
CAA---CAACAACA---ACCCAACCATGTGAGCCTGATGCAGC-AGCAGCAGCTGC---CAGGCGCCGTACTGCC------GCCGCCGCACATGGGCATGCCGCCCAG-CTATGG----CAGTCA-CCATCAGCAGCAGCAG---CAGGCACAGCAGCAAGCCC----------AACAGCAGCA---GC------------AGCAGC-AACAGGCGCA-----------------------ACAGCAGCAGAGCGCAC--------------------------------------------------------CGCCCTATATGTCCAGCAGCAAACATCAGGCAAGC-------------GCTCAGCTCAAC-TCCTCGCCG-----CA----GTAT--------------CGTGCA-----CCGT--T-----TCCACA------ACT-----CT--------C-GCCA-CAGATGTCGCCGC----G-------------------TCC--G------------CCCACCATGT-CGCCGCATCC-ACA----------AATGTCG--CCG--CGTCCAGTGGGCGTGTCGCCCGCCAAGCCACCACAAACAGCACAGCAGCAGC-AGCAGGT-----------G------CA----------ACAGC---AG---CAGCASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............................................................................................................................................................................................C------------AGCAGC-AACAGGCGCA-----------------------ACAGCAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000100000000000000000000000000
..................................TGATGCAGC-AGCAGCAGCTGC---CA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000001000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCC-ACA----------AATGTCG--CCG--C...........................................................................................................2011.001000000000000000000000000000000000000100000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCA-CAGATGTCGCCGC----G-------------------TCC--..........................................................................................................................................................................2111.001000000000000000000000000000000000001000000000000000000000000000
.................ACCCAACCATGTGAGCCTGATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000010000000000000000000000000
......................................................................................CGCACATGGGCATGCCGCCCAG-CT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACAGCAGCAGC-AGCAGGT-----------G------CA----------AC................2511.001000000000000000000000000000000000001000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT-----CT--------C-GCCA-CAGATGTCGCCGC----G-------------------TCC--..........................................................................................................................................................................2611.001000100000000000000000000000000000000000000000000000000000000000
......................ACCATGTGAGCCTGATGCAGC-AGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000100000000000000000000000000000000000000000000000000000000000
......................ACCATGTGAGCCTGATGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................ATCAGGCAAGC-------------GCTCAGCT...........................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.....................AACCATGTGAGCCTGATGCAGC-A................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000100000000000000000000000000000
......................ACCATGTGAGCCTGATGCAGC-.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000001000000000000000000000000000
..............................................................................................................................................................................................................................................................GCAC--------------------------------------------------------CGCCCTATATGTCCAGCAGC...............................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000001000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCGC----G-------------------TCC--G------------CCCACCATGT-CGCC..............................................................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-GCCA-CAGATGTCGCCGC----G-------------------TCC--G------------CCC..........................................................................................................................................................2611.001000100000000000000000000000000000000000000000000000000000000000
...............................................................................................................ATGG----CAGTCA-CCATCAGCAGCAGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACT-----CT--------C-GCCA-CAGATGTCGC..........................................................................................................................................................................................................2011.001000000000000000000000000000000000001000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACCACAAACAGCACAGCAGC...........................................................2211.001000000000000000000000000000000000000000000000000000100000000000
.........................................................................................................................................................................................................................A-----------------------ACAGCAGCAGAGCGCAC--------------------------------------------------------CG.................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000010000000000000000000000000000000000000000000000
.............A---ACCCAACCATGTGAGCCTGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000001000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C----G-------------------TCC--G------------CCCACCATGT-CGCC..............................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CC--G------------CCCACCATGT-CGCCGC............................................................................................................................................1911.001000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................................................CAC--------------------------------------------------------CGCCCTATATGTCCAGC..................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000001000000000000000000000000000000000
.....................................................TGC---CAGGCGCCGTACTGCC------GCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000100000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACAGCAGCAGC-AGCAGGT-----------G------CA----------ACAG..............2711.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................CAGCTCAAC-TCCTCGCCG-----CA----..................................................................................................................................................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAACAGCACAGCAGCAGC-AGCA...................................................2311.001000000000000000000100000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGCCGC----G-------------------TCC--G------------CCCACCAT.....................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000001
...............................................................................................................................................................................................................................................................................................................................................AACATCAGGCAAGC-------------GCTCAGCT...........................................................................................................................................................................................................................................................................................................................2211.001000000000000001000000000000000000000000000000000000000000000000
.................................CTGATGCAGC-AGCAGCAGCTGC---C.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C----G-------------------TCC--G------------CCCACCATGT-CGC...............................................................................................................................................1911.001000000000000100000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCC-ACA----------AATGTCG--CCG--CGT.........................................................................................................2011.001000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT-----CT--------C-GCCA-CAGATGTCGCC.........................................................................................................................................................................................................2011.001000000000000000000000000000000000000100000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................GTGCA-----CCGT--T-----TCCACA------ACT-----.....................................................................................................................................................................................................................................1911.001000000000000000000000000000001000000000000000000000000000000000
........................................................................................................................AGTCA-CCATCAGCAGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000001000
...........ACA---ACCCAACCATGTGAGCCTGATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000001000000000000000000000000000
.............................................................................................................CTATGG----CAGTCA-CCATCAGCAGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC-AGCAGGT-----------G------CA----------ACAGC---AG---CAGC.2411.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................CCCAG-CTATGG----CAGTCA-CCAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................ATGG----CAGTCA-CCATCAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................GG----CAGTCA-CCATCAGCAGCAGCAG---CA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000010000000000000000000000000
...........................................................................................................................................................AGCAAGCCC----------AACAGCAGCA---GC------------AGCAGC-.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................GCCGCCGCACATGGGCATGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................TATGG----CAGTCA-CCATCAGCAGCAGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000010000000000000000000000000
...................CCAACCATGTGAGCCTGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000100000000000000000000000000
.................................................................................................................................................................................................................................................ACAGCAGCAGAGCGCAC--------------------------------------------------------CGCCCT.............................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000100000000000000000000000000000000000000
.............................................................................................................................................................................................................GC-AACAGGCGCA-----------------------ACAGCAGCAGAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG--CGTCCAGTGGGCGTGTCGCCC.......................................................................................2311.001000000000000000001000000000000000000000000000000000000000000000
.................................CTGATGCAGC-AGCAGCAGCTGC---CA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000001
...............................................................................................................................................................................................................................................................................................................................TATATGTCCAGCAGCAAACATCAGG.....................................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................ACTGCC------GCCGCCGCACATGGGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
......CAACAACA---ACCCAACCATGTGAGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000100000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA----------AATGTCG--CCG--CGTCCA......................................................................................................1911.001000000000000000000000000000000000000100000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCATCC-ACA----------AATGTCG--CC...............................................................................................................1911.001000000000000000000000000000000000000100000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCACAAACAGCACAGCAGC...........................................................2111.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGC-AGCAGGT-----------G------CA----------ACA...............2320.501000000000000000000000000000000000001000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGC-AGCAGGT-----------G------CA----------ACAGC---A.........2130.331001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC-AGCAGGT-----------G------CA----------ACAGC---A.........1950.201000000000000000000000000000001000000000000000000000000000000000
................................................................................................................................................................................CAGCAGCA---GC------------AGCAGC-AACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.102000000000000000000000000000000000002000000000000000000000000000
.....................................................................................................................................................................................GCA---GC------------AGCAGC-AACAGGCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19130.081000000000000000000000000000001000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCACAGCAGCAGC-AGC....................................................18160.061010000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................AACAGCAGCA---GC------------AGCAGC-A............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000000000000001000000000000000000000000000000
............................................................................................................................A-CCATCAGCAGCAGCAG---CA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000000000000000001000000000000000000000000000
...................................................................................................................................................................C----------AACAGCAGCA---GC------------AGCAGC-AACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000000010000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCACAGCAGCAGC-AGCA...................................................18200.051000000000000000000001000000000000000000000000000000000000000000
...........................................................................................................................CA-CCATCAGCAGCAGCAG---CA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000001000000000000000000000000000000000000000000000000
..................................................................................................................................................................CC----------AACAGCAGCA---GC------------AGCAGC-AAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................A-CCATCAGCAGCAGCAG---C...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
CCATCAAAGCGTCT---ATGTC--C--ATAATCACAAAGTAGTTAGCGTTGACTAC---CAGGG----TAAGGCTTT---G-CCAG------------------TGTCCTAATGCACCACAGCAA-CCACTAACTGCATCCA---TTCACTAACTGACTGATCC----------ACCAAT--CACCA-------------AAC-------A------------------CCGCTCACTCACACACCTGTTGCATGCCA---------------CGCACTTGT--------------------------------------------------------------C--GCACCCCTCGCACCCGCCACTCTCCAC-ACTTCGCTT-----TT----GTTT--TC-TGTTTTTTCCGC--T-----TT--GTCT---ACCTATA------AA------CGTCGGGTATCTGGTT-TTGGG-----------------------TATTGAGTCTC---------GGCCACATTAACCAAGC-C----------GCTGCTTGCTCCAAATCTGT--ATA-------------T---------GTAGAGTCGCCCACAACCACGCAGCTGCCGCC---CATT-----------TCGGATGCA----------CCAGCGCCCAGT---GAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................................TTAGCGTTGACTAC---CAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002000020
droGri2
AA------ACGTCT---ATATC--C--ATAATCACAAAGTAGTTAGCGTTGACTAC---CAGGG----TAAGGCTTT---G-CCAG------------------TGTCCTAATGC----C-ACCAGCCACTAACTGCATCCA---TTCACTAACTGACTAACCC----------ACCAGCACCA---CC------------A-----------------------------------------GCCTCTCACATACACACCTGATGCATGTCAAGCACGTGT--------------------------------------------------------------CAAGCACCCCTCGCATCC----CTCTGCACTATTTTGCTT-----TC----GTTTTGTG-TGTGTTTTCTGCTTT-----TT----G---------TA------C-------TGTCGGGTGTCGGTTG-TCGGGATTCCTG-----T--G-------TATCGAGTGTT---------AGCTTCATTAATCAGGC-C----------GCTGC---CTCCAAATCTCT--AT------------------------ATAGAGTCACCCACCACCACGCAGTTGCCAAC---CATT-----------GTGGATGCA----------C------------CAGCGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
CAC---GAACACCT---TGCTC--C--ACAGCCAAAAAGTAGCTAACGTTGACTAC---CAGGG----TAAGGTCCC---A-TTGC---------------------------------TGA-------CTAACTGCACCCA---CCCTCTAATACGGCACAAGA---------------ACCA---TC------------AC--------------------------T---CCACTCATTTGGCCACTGCATGATCT-CTGCAC----T------C------------------------CTGCACCTATGCAT-----------------------------------------------------------------CCTTTG--------TTTTAGTT-TGTAATC-------------------------------------CTT-----CG-------CT-GGTG-CTGGGACCACCTT----T------------------------CCGAGTAACCAAACCCAAAAAGC-C----------GTAGC-----CCTAGTCTCT--ATG---------TGTGTGTGCCTTTCGTAGAGTCGCCAACCACCACGCAGCTGCTGACACCGAAT-----------C------CA----------CCAGC---CACT---CCASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATG---------TGTGTGTGCCTTTCGT.....................................................................................1911.001100000
.......................................................................................................................................................................................................................................................ACTGCATGATCT-CTGCAC----T------C------------------------C..............................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
........................................................................................................................GA-------CTAACTGCACCCA---CCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
droBip1
CAC---GAACACCT---TCCTC--C--ACAGCCAAAAAGTAGCTAACGTTGACTAC---CAGGG----TAAGGTCCC---A-TTGC---------------------------------TGA-------CTAACTGCACCCA---CCCTCTAATACGGCACAAGA---------------ACCA---TC------------AC--------------------------T---CCACTCATTTGGCCACTGCATGATCT-CTGCAC----T------C------------------------CTGCACCTATGCAT----------------------------------------------------------CC-----TGT-----TT----GTTTAGTT-TATAATC-------------------------------------CTT-----CG-------CT-GGTG-CTGGGACCACCTT----T------------------------CCGAGTAACCAAACCGAAAAAGC-C----------GTAGC-----CCCAGTCTCT--ATG---------TGTGTGTGCCTTTCGTAGAGTCGCCAACCACCACTCAGCTGCTGACACCGAAT-----------C------CA----------CCAGC---CATT---CCASizeHit CountTotal NormTotal
No Reads
droKik1
CAA---CAACACCC---TCATC--C--ACAGCCACAAAGTAGTTAACATTGACTAC---CAGGG----TAAGGCCCC---A-TCGG---------------------------------TGACCA-GCACTAACTGCATCCGCCACACTCTAACCCACTGCCAC------------------------------------GAC--------------------------ACTACCTTCCATTTGGCCACTGCATGAACACCTC---------CTGCACCTG------CACCTGCACCTGCACCT--------GCA------------------------------------------------------------------CCTC----TT----TTTTAATT-TGTAACCTCTG-------------------------TC------CCC-----CG-------CT-GGTGCCTGGGATCGCCTC----T-------------------GTAA-CTGAGTAACCA--------CAGC-C----------TTAGC---CCCCAAGTCTCT--ATG--TG---AGTGTGTGTGCCTTTCGTAGAGTCGCCCACAACAACT------------------------------------------------GCAAC---G---GCAGCCSizeHit CountTotal NormTotal
No Reads
droFic1
CTC---CAACACCT---TCCTC--C--ACAGCCACAAAATAGTTAATGTCGACTAC---CAGGG----TAAGGACCCACCA-TCGC---------------------------------TGACCA-GCACTAACTGCATCCACCACACGCTAACCCATCACTACA---------------ACCA---CC------------AC-----TACCACTACAACCACAAGAAAA---CCAACCATTTGGCCACTGCATGATCGCCTC---------CAGCACCT----------------------CT--------GCA------------------------------------------------------------------CCTTTGT-TTTTTTGTTTAGTTATGTAATTTCTGCCCTGCT--CT----GTGTTTTTTGTA------ATC-----CG-------CT-GGTG-CTGGGACCACCTC--TCT-------------------GCCCTCCGAGTAACAA------AAAAGC-C----------ATAGT---CTCCTAGTCTCTCTATGAGTG---TGTGTGTGTGCCTTTCGTAGAGTCGCCCACCACCACGCAGCAGCTTTCCACCACTCCG------ATC------C---------------C---CAAT---CTGSizeHit CountTotal NormTotal
No Reads
droEle1
CCATCCCAACACCT---TCCTC--C--ACAGCCACAAAGTAGTTAGCGCCGACTAC---CAGGG----TAAGGCCCC---A-TCGA---------------------------------TGACCA-GCACTAACTGCATCCA---CACGCTAACCCACCACCAC------------CACA--AAACC-------------AAC--------------------------ACCACCACCCATTTGGCCACTGCATGACCGCCTGCAACATCTACAGCA------------------------CCT--------GCA------------------------------------------------------------------CCT-----TT----GTTTAGTT-TGTAATCTCTGCCCTGCACTCC----G-----TCTGTA------CTC-----CG-------CT-GGTG-CTGGGAACATCAAACACCGAATAACGAACACCCACCCCCCC-CCGAGTAACCA--------AAGCCC----------AAAGC-----CCTAGTCTCT--ATGTGTG---TGTGTGTGTGCCTTTCGTAGAGTCGCCCACAACGACGCAGCTGACCAC-TCCGAT-----------C------C-AG-----------------------GATSizeHit CountTotal NormTotal
No Reads
droRho1
C-----------CT---TCCTC--C--AAAGCCACAAAGTAGTTAACATTGACTAC---CAGGG----TAAGGCCCC---A-TCGC---------------------------------TGACCA-GCACTAACTGCATCCA---CACGCTAACACACCACCAC------------------------------------AAC--------------------------A---CCACCCATTTGGCCACTGCATGATCGCCTGCACCATCTACGGCA------------------------CCT--------GCA------------------------------------------------------------------CCT-----TT----GTTTAGTT-TGTAATCTATGCCCT-----CC----G-----TTTGTA------CTC-----TG-------CT-GGTG-CTGGGAACACCGAACTCCGAATACCGAACACCCAT--GCCC-CCGAGTAACCA--------AAGC-C----------AAAGT-----CCTAGTCTCT--ATG--TG---TGTGTGTGTGCCTTTCGTAGAGTCGCCCACAACAACGCAGCAGCTTTCCTCGGGT-----------C------C-AACCAC----------------------SizeHit CountTotal NormTotal
No Reads
droBia1
CCATTCAAACACAT---TTCTT--C--ATAGCCACAAAGTAGTTAACGTTGACTAC---CAGGG----TAAGGCCCC---A-TCGC---------------------------------TGACCA-GCACTAACTGCATCCACACCAAGCTAACCCAACACCAC------------------------------------CAC--------------------------ACCACCAACCATTTGGCCACTGCATGATCGCCTGCACCACC------A------------------------CCT--------GCAC----------------------------------------------------------CA-----TCT-----TT----GTTTAGTT-TGTAATCTCTGCCCT-----CT----GT---GTTTGTC------CTC-----CG-------CTCGGTG-CTGGGATCACCTC----T-------------------GCCCCGCGAGTAACCA--------AAGT-C----------CTAGT-----TGTAGTCACT--ATG---------TGTGTGTGCCTTTCTTAGAGTCGCCCACAACCACGCAGCTGATAACGTCGGCT-----------C------C-AA-----------------------GTGSizeHit CountTotal NormTotal
No Reads
droTak1
C-----------CT---TCCTT--C--ATAGCCACAAAGTAGCTAACGTTGACTAC---CAGGG----TAAGGACCC---A-TCGC---------------------------------TGACCA-GCACTAACTGCATCCA---CACGCTAACCCAACACCAC------------------------------------AAG-----------------------TACA---CCAACCATTTGGCCACTGCATGATCGCCTGCAT------------------------------CTTCACCT--------GCA------------------------------------------------------------------CCT-----TT----GTTTAGTT-TGTAATCTCTGCCCT-----CC----GT---TTTTGTC------CTC-----TG-------CTCGGTG-CTGGGATAACCA---------------------------------AAAAAACA--------AAGC-C----------ATAGT-----CCTAGTCTCT--ATGTGTG---TGTGTGTGTGCCTTTCGTAGAGTCGCCCACAACAACGCAGCTGATTTCATCGGTT-----------C------C-AGCTGC----------------------SizeHit CountTotal NormTotal
No Reads
droEug1
AA------ACACCT---TCCTT--C--ATAGCCACAAAGTAGTTAACGTTGACTAC---CAGGG----TAAGGCCCC---A-TCGC---------------------------------TGACCA-GCACTAACTGCATCCA---CACGCTAACCCATCACCAA------------------------------------AAC--------------------------ACGAACACCCATTTGGCCACTGCATGATCGCCTGCACCATCTCCAGCACCCG------CACCTGCACCTGCACCT--------GCA------------------------------------------------------------------CCT-----TT----GTTTAGTT-TGTAATCTTCGCTCC-----CC----G-----TCTGTC------TAT-----CG-------CTTGGTG-CTGGGATCACCTC----T-------------------GCCCCACGAGTAACAA----CAAAAAGC-C----------ATAGT-----CCTAGTCTTT--ATG-------TGTGTGTGTGCCTTTCGTAGAGTCACCCACAACAACGCAGTTGCAGTCATCGGTT-----------C------C-AAC-------------------------SizeHit CountTotal NormTotal
No Reads
dm3
C-----------CT---TCCTT--C--ATAGCCACAAAGTAGTTAACTTTGACTAT---CAGGG----TAAGGACCC---A-TCGC---------------------------------TGACCA-GCACTAATTGCATCCA---CACGCTAACCCACCAACAC------------------------------------AAC--------------------------A---CCACCCGTTTGGCGACTGCATGATCGCCTGCACCACCTACAGCAC------------------ATGTACCT--------GCA------------------------------------------------------------------CCT-----TT----GTTTAGTT-TAGAATCTCTACCCT-----TC----G-----TCTGTA------CTT-----CG-------CTGGGTG-CTGGGATCACCAT----T-------------------GCCC-CCGAGTAACCA--------AATT-C----------GTAGT-----CCTAGTTTCT--ATGAGTG---TGTGTGTGTGCCTTTCGTAGAGTCGCCCACCACAACGCAGCTGCTTTCATCAGTT-----------C------C-A---------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................C----G-----TCTGTA------CTT-----CG-------CTGGGTG-CTG.................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................AACAC------------------------------------AAC--------------------------A---CCACCCGTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................GTACCT--------GCA------------------------------------------------------------------CCT-----TT----GTTTA.............................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................A------CTT-----CG-------CTGGGTG-CTGGGATCAC..........................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT-----CCTAGTTTCT--ATGAGTG---TG.....................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGTG---TGTGTGTGTGCCTTTCGT.....................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTCT--ATGAGTG---TGTGTGT................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGTG---TGTGTGTGTGCCTTTCGTA....................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGTGCCTTTCGTAG...................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTGCCTTTCGTAGAGT................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GTA------CTT-----CG-------CTGGGTG-CTGGGA..............................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTCT--ATGAGTG---TGTG...................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTG---TGTGTGTGTGCCTTTCGTAG...................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
................................................................................................................................................................................................................................................................TCGCCTGCACCACCTACAGCAC------------------ATGTACC..............................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGT-----CCTAGTTTCT--ATGAGTG---TGTG...................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................CTCTACCCT-----TC----G-----TCTGTA------CTT-----CG-------CTGG........................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG-------CTGGGTG-CTGGGATCACCAT----T-------------------G..............................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCT--ATGAGTG---TGTGTGT................................................................................................1830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
droSim2
C-----------CT---TCCTT--C--ATAGCCACAAAGTAGTTAACTTTGACTAC---CAGGG----TAAGGCCCC---A-TCGC---------------------------------TGACCA-GCACTAATTGCATCCA---CTCGCTAACCCACCAACAC------------------------------------AAC--------------------------A---CCACCCATTTGGCTACTGCATGATCGCCTGCACCACCTACAGCAC------------------CTGCACCT--------GCA------------------------------------------------------------------CCT-----TT----GTTTAGTT-TATAATCTCTATCCT-----TC----G-----TCTGTA------CTT-----CG-------CTGGGTG-CTGGGATCACCAT----T-------------------GCCC-CCGAGTAACCA--------AATT-C----------GTAGT-----CCTAGTTTCT--ATGAGTG---TGTGTGTGTGCCTTTCGTAGAGTCGCCCACGACAACGCAGCTGCTTTCATCAGTT-----------C------C-AACCGCTCAA------------GCAACGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGCCTTTCGTAGAGTC...............................................................................1912.00220000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGCCTTTCGTAGAGTC...............................................................................2111.00100100000000000000
................................................................................................................................................................................................................................................TTTGGCTACTGCATGATCGCCTGCACC..................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................CTATCCT-----TC----G-----TCTGTA------CTT-----CG-------CTGGGC......................................................................................................................................................................................................................2711.00100100000000000000
........................................AGTTAACTTTGACTAC---CAGGA----GT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010000000000000
droSec2
C-----------CT---TCCTT--C--ATAGCCACAAAGTAGTTAACTTTGACTAC---CAGGG----TAAGGCCCC---A-TCGC---------------------------------TGACCA-GCACTAATTGCATCCA---CACACTAACCCACCAACAC------------------------------------AAC--------------------------A---CCACCCATTTGGGTACTGCATGATCGCCTGCACCACCTACAGCAC------------------CTGCACCT--------GCA------------------------------------------------------------------CCT-----TT----GTTTAGTT-TATAATCTCTACCCT-----TC----G-----TCTGTA------CTT-----CG-------CTGGGTG-CTGGGATCACCAT----T-------------------GCCC-CCGAGTAACCA--------AATT-C----------GTAGT-----CCTAGTTTCT--ATGAGTG---TGTGTGTGTGCCTTTCGTAGAGTCGCCCACGACAACGCAGCTGCTTTCATCAGTT-----------C------C-AACCGCTCAA------------GCAACGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
--------ACACCT---TCCTT--C--ATAGCCACAAAGTAGTTAACTTTGACTAC---CAGGG----TAAGGCCCC---T-TCGC---------------------------------TGACCA-GCACTAATTGCATCCA---CACGCTAACCCACCAACAC------------------------------------AAC--------------------------ACCACCACCCATTTGGCTACTGCATGATCGCTTGCACCACCTCCAGCACCTGCACCCGCACCCGCACCTGCACCT--------GCA------------------------------------------------------------------CCT-----TT----ATTTAGTT-TATAATCTCTACCCT-----CC----G-----TCTGTA------CTT-----TG-------CTGGGTG-CTGGGATCACCAT----T-------------------GCCC-CCGAGTAACCA--------AATT-C----------GTAGT-----CCTAGTTTCT--ATGAGTG---TGTGTGTGTGCCTTTCGTAGAGTCGCCCACCACAACGCAGCTGCTTACATCAGTT-----------C------C-A---------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................T-TATAATCTCTACCCT-----CC----G-----TCTG.....................................................................................................................................................................................................................................................2311.00101000000000
droEre2
C-----------CT---TCCTT--C--ATAGCCACAAAGTAGTTAACTTTGACTAC---CAGGG----TAAGGCCCC---A-TCGC---------------------------------TGACCA-GCACTAATTGCATCCA---CACGCTAACCCACCAACAC------------------------------------AAC--------------------------A---CCACCCATTTGGCTACTGCATGATCGCCTGCACCACCTCCAGCACCTG------------CACCTGCACCT--------GCA------------------------------------------------------------------CCT-----TT----GTCTAGTT-TATAATCTGTACCCT-----CC----G-----TCTGTA------CTT-----CG-------CTGGGTG-CTGGGATCACCAT----T-------------------GCCC-CCGAGTAACCA--------AATT-C----------GTAGT-----CCTAGTTTCT--ATGAGTG---TGTGTGTGTGCCTTTCGTAGAGTCGCCTACCACAACGCAGCAGCATACATCAGTT-----------C------C-A---------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................................................................................TCGC---------------------------------TGACCA-GCACTAATTGCATC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTG---TGTGTGTGTGCCTTTCGT.....................................................................................2111.0010000100
...........................................................................................................................................................................................................................................ACCCATTTGGCTACTGCATGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001000

Generated: 05/17/2015 at 10:37 PM