dps_522

Antisense to intron [Dpse\GA22127-in]; intron [Dpse\GA15887-in]; CDS [Dpse\GA15887-cds]; CDS [Dpse\GA15887-cds]

TTACCCAAAGAGGGTAGCCAGGAGATTGAAATGAAGGAGTTGTTGTTAACGTGAGTCTAAAGAAGGGAATAAGATCTCTTTTTGGGTTGTATACAGGCAGATCTAATGCCCTCCTTTATCCCTCAGGTATGCTGTGGATATCATTGCCTCGACCATCTTTGGCCTGGATGTGGACA ************************************************.((((..(((((.((((.((.((((((...((((.........)))).)))))).)).)))).)))))...)))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M040 female body	V112 male body	GSM444067 head	M059 embryo	GSM343916 embryo
..................................................GTGAGTCTAAAGAAGGGAATAAG.......................................................................................................	23	0	1	8.00	8	6	2	0	0	0
..................................................GTGAGTCTAAAGAAGGGAATAAGA......................................................................................................	24	0	1	5.00	5	4	1	0	0	0
.......................................................................................................TAATGCCCTCCTTTATCCCTCAGT.................................................	24	1	1	5.00	5	3	1	1	0	0
..........................................................................................................................................................ATCTTTGGCCTGGATGTGGACA	22	0	1	4.00	4	3	1	0	0	0
..................................................GTGAGTCTAAAGAAGGGAAT..........................................................................................................	20	0	1	2.00	2	1	1	0	0	0
........................................................................................................AATGCCCTCCTTTATCCCTCAGT.................................................	23	1	1	2.00	2	2	0	0	0	0
.......................................................................................................TCATACCCTCCTTTATCCCTCA...................................................	22	2	1	2.00	2	2	0	0	0	0
.............GTAGCCAGGAGATTGAAATGAAGGA..........................................................................................................................................	25	0	1	2.00	2	1	0	0	0	1
..........................................................................................................................................TATCATTGCCTCGACCATCTTTGGC.............	25	0	1	2.00	2	2	0	0	0	0
......................................................................................................................................................GACCATCTTTGGCCTGGATGTGGACA	26	0	1	2.00	2	2	0	0	0	0
.......................................................................................................TAATGCCCTCCTTTATCCCTCAG..................................................	23	0	1	2.00	2	2	0	0	0	0
...................................................TGAGTCTAAAGAAGGGAATAAG.......................................................................................................	22	0	1	2.00	2	2	0	0	0	0
..................................................GTGAGTGTAAAGAAGGGAATGAGA......................................................................................................	24	2	1	1.00	1	0	1	0	0	0
..........................................................................................................................................................ATCTTTGGCCTGGATGTGG...	19	0	1	1.00	1	1	0	0	0	0
...................................................TGAGTCTAAAGAAGGGAATAAGA......................................................................................................	23	0	1	1.00	1	1	0	0	0	0
..................................................GTGAGTCTAAAGAAGGGAACAA........................................................................................................	22	1	1	1.00	1	1	0	0	0	0
..................................................GTGAGTCTAAAGAAGGGAATAAGTTT....................................................................................................	26	2	1	1.00	1	0	1	0	0	0
...................................................TTAGTCTAAAGAAGGGAATAAGA......................................................................................................	23	1	1	1.00	1	0	0	0	1	0
............................................................................................................................ACGTATGCTGTGGATATCATTGCC............................	24	1	1	1.00	1	0	0	1	0	0
.............................................................................................................................................CATTGCGTCGACCATCTTTGGCCTGG.........	26	1	1	1.00	1	1	0	0	0	0
..................................................GTGAGTCTAAAGAAGGGAATAA........................................................................................................	22	0	1	1.00	1	0	1	0	0	0
...............AGCCAGGAGATTGAAATGAAGG...........................................................................................................................................	22	0	1	1.00	1	1	0	0	0	0
..................................................GTGAGTCTAAAGAAGGGAATA.........................................................................................................	21	0	1	1.00	1	0	1	0	0	0
..................CAGGAGATTGAAATGAAGG...........................................................................................................................................	19	0	1	1.00	1	1	0	0	0	0
................................................................................................................................................TGCCTCGACCATCTTTGGCCT...........	21	0	2	0.50	1	1	0	0	0	0
........................................................................GATATCTTTGTGGGTTGTA.....................................................................................	19	2	3	0.33	1	0	0	1	0	0
.......................................................................AGATATCTTTGAGGGTTGTA.....................................................................................	20	3	14	0.07	1	0	0	1	0	0

AATGGGTTTCTCCCATCGGTCCTCTAACTTTACTTCCTCAACAACAATTGCACTCAGATTTCTTCCCTTATTCTAGAGAAAAACCCAACATATGTCCGTCTAGATTACGGGAGGAAATAGGGAGTCCATACGACACCTATAGTAACGGAGCTGGTAGAAACCGGACCTACACCTGT ************************************************.((((..(((((.((((.((.((((((...((((.........)))).)))))).)).)))).)))))...)))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M040 female body	V112 male body	GSM444067 head	M022 male body	M062 head	GSM343916 embryo
................................................................................................................GGAAACTGGGAGTCCATA..............................................	18	2	3	16.67	50	50	0	0	0	0	0
...............................................................................................................CGGAAACTGGGAGTCCATA..............................................	19	3	11	12.27	135	132	0	1	1	1	0
..............................................................................................................GCGGAAACTGGGAGTCCATA..............................................	20	3	1	10.00	10	9	1	0	0	0	0
.............................................................................................................CGAGGAAACTGGGAGTCCATA..............................................	21	3	2	0.50	1	0	1	0	0	0	0
..............................................................................................................GCGGAAACTGGGAGTCCAT...............................................	19	3	9	0.44	4	4	0	0	0	0	0
..........................................................................................................ATGGGAGGAAAGAGGGAGT...................................................	19	2	6	0.17	1	1	0	0	0	0	0
................................................................................................................GGAAACTGGGAGTCCATACT............................................	20	3	7	0.14	1	0	0	1	0	0	0
......................................................................................................................................................CTGGTATAATCCGGTCCTA.......	19	3	14	0.07	1	0	0	0	0	0	1
................................................................................................................GGAAACTGGGAGTCCATAA.............................................	19	3	16	0.06	1	1	0	0	0	0	0

Species	Coordinate	ID	Type	Alignment
dp5	2:13541116-13541291 -	dps_522	candidate-rescued	TTACCCA------------AAGAGGGTAGCCA-GGAGATTGAAATGA-AGGAGTTGTTGTTAACGTGAGTCTAAAGAAG--G----------------GA-------------------------------------------ATAAGAT-----------------------------------------------------------------------CTCTTTTTGGGTTGTATACAGG-----------CAGATCTAATGCC------------CTCCTTT----------------------------------------------------------------ATCCCTCAGGTATGCTGTGGATATCATTGCCTCGACCATCTTTGGCCTGGATGTGGACA
droPer2	scaffold_0:6908473-6908648 +	dpe_2531		TTACCCA------------AAGAGGGTAGCCA-GGAGATTGAAATGA-AGGAGTTGTTGTTAACGTGAGTGTAAAGAAG--G----------------GA-------------------------------------------ATGAGAT-----------------------------------------------------------------------CTCTTTTTTGGTTGTATACAGG-----------CAGATCTAATACC------------CTCCTTT----------------------------------------------------------------ATCCCTCAGGTATGCTGTGGATATCATTGCCTCGACCATCTTTGGCCTGGATGTGGACA
droWil2	scf2_1100000004921:1996138-1996302 +			TTGCCAC------------AGGAAGGTAGCAA-GGAGATTGACATTA-AGCAATTATTAACCACGTGAGTTGTCCAG---------------------GA-------------------------------------------ATTCAATCTATTGAAT------TTGTTTGCA---------------------------------------------------------------TT-------------------CCGAATA--------------TTA--------------------------------------------------------------TTCTG--TTTTTCAGCTATGCCATTGACATCATAGGTTCGACCATTTTTGGCCTGGACGTGGATA
droVir3	scaffold_12822:3647853-3648029 +			ATACAGC------------AGTCGGGCACTGT-GGAAATCGATGTAA-AGAACTTGATGTCATGGTAGGTTAGCAGTCGAC-TTTG-----------------------------------------------------------------------------------------------------------------------------------------------CAGTGGAGT--ATTTCATGCTTAGACAAATTTC--TCCCCTTCT------C--------------------------------------------------------------CGTTTGC--ACTTTTAGCTTTGTGATTGACATTATTGCCTCGACCATATTTGGCCTGGATGTGGACA
droMoj3	scaffold_6540:16962620-16962783 +			CTACAGC------------AGTCAGGCGCAAC-TGAAATCGATATGA-AGAATTTAATGGCATGGTAAGCAACTGTT-----TGTG----------------------------------------------------------------------------------------C-----------------------------------------------ATTACCTTAGCT----TCATG-----------AAGATCCTTCATT------------TCCCCAT----------------------------------------------------------------TGCTTTCAGCTATGGTATTGATATCATTGCCTCCACTATACTTGGTTTGGATGTGGACA
droGri2	scaffold_14906:1255381-1255552 +			ATGCAGC------------GGTCAGGCACTGT-AGAAGTCGATATGA-AGAATTTGATGTCATCGTAAGCAATTTTT-GAA-AAT-ACACACATTTAC--------------------------------------------------------TGGAT------ATATATGTA----------------------------------------------------------------------------------------TTTTCCCGCCT------------T--------------------------------------------------------GAACTGT--TTTTTCAGCTATGCTATTGATATTATTGCCTCGACGATATTTGGCCTAGATGTGGACA
droAna3	scaffold_13340:20621150-20621307 -			GTTCCAA------------AAACAGGAAGCAT-AGAGTTGGAGATGA-AGGCCTGGATGTCCACGTAAGTCGTGGCAA------------------------------------------------------------------------------------------------------------------------------------------------TCTTCTTCAGCTCCAA--AAT-----------TAATCCTAATA--------------CTACTT------------------------------------------------------------------TATCGTAGATATGCCATCGATATCATAGCCTCAACCATTTTTGGACTTGAAGTGGACA
droBip1	scf7180000396413:1781985-1782139 +			CTGCCCC------------AATCGGGCAGCAA-GGAAGTGGAAATAA-AGGAACTTTTTGCCACGTGAGTCAATGAA----------------------------------------------------------------------GAT-----------------------------------------------------------------------CTTTTC--AAG----------------ATTGGA---ACCCAAAA--------------AC--------------------------------------------------------------ACTCGT--CCTCCTAGGTATGCTGTTGACATCATTGGCTCGACCATTTTCGGCCTGGATGTGGACA
droKik1	scf7180000302634:848696-848902 -			GAATGTG---------AGCAGTCCGGGGGCAA-GGAATTGGACATGA-AGAGCGTCATGACAACGTGAGTTGGCGGAAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTGATT------------CTCTCAGTGCACCCTGGAAATTTGTTTATCTCTGGAACGTAAATTTCAATTATATTTGGTTTTTATTCGTTCCTCCCTAGTTACGCGATTGATATAGTTGCCTCGACTATTTTTGGCCTGGAGGTAGACA
droFic1	scf7180000454055:301018-301117 -			CTCCCAG------------AACAAGGTTTCAA-GGAGGTGGATCTCA-AGAAAGTGATGCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTATGCCATCGATATAATTGCTTCGACTATTTTTGGTTTGGATGTGAATA
droEle1	scf7180000491047:1311598-1311853 -			CTACCTG------------AGACAGGCATCAA-AGAGCTGGATATCA-AGAGTCTAACGTCAACGTAGGTTAAAAACTT--C----------------GAGTGAAATATAGAAAATATAAGGGTTTTATCAAACGTTTAAGACCATTAAACCATTTCAA------ATGCTTGCATCTCTCGCTATAACTGCTGACCTTACCAGAGAAAAAACGAATAAGCTCAATTTT---------------------------------------------------T--------------------------------------------------------------TATTCCT--ACTCCCAGCTATGCTATTGATATTATTGCCTCGACTATTTTCGGCCTTGATGTTGATA
droRho1	scf7180000768400:7384-7495 -			CAGCATCTTGCAGTGGTTCTGGACCAGACCGA-CGAAGTGGAGATAA-AAGATGTGATGACC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGTATGCGGTTGACATTATTGGATCGGTGATCTTCGGCTTGGAGATCGACA
droBia1	scf7180000302402:5187575-5187674 -			CTGCCAG------------AGAAGGATTTCGA-GGAGGTGGATCTCA-AGAAGGTGATGCAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACTACGCTATCGACATTATTGCCTCGACCATCTTTGGCTTGGACGTAAACA
droTak1	scf7180000415380:737526-737698 +			TCCCC-C------------AGGGGGGCAACAA-GGAGGTGGACATCA-AGAAACTAATGTCAACGTAAGTTATTGGAAT-------ATTAATATTAAT--------------------------------------------------------CCGAA------GAGAAAGAT----------------------------------------------------------------------------------------TATAACGATCTTCATTTCTTCTTA----------------------------------------------------------------ATCCGCCAGATATGCCATCGATATCATTGGCACGACTATTTTTGGACTTAATGTCGATA
droEug1	scf7180000409802:95316-95512 -			TTGCCTG------------AGACGGGCAGCAA-GGAG-TTGATATCA-AGAGTCTAATGTCAACGTAAGTCAAAGGATT----------------AAA--------------------------------------------------------AGGATAACAAAGTTTTTATACCTCCTTTAATAGTTGCTGAACTTATA--------------------------------T----T---A-----------AATAACTAATATT------------CT-------------------------------------------------------------AATTCCA--ACCCGTAGATATGCCATCGATATTATTGCCACAAGCATTTTTGGCCTTGACGTTGATA
dm3	chr2R:4452853-4452974 -			TGCCATG------------GACAAGGCGGTGAAGGAGGCCAAAGTGGAGGAGGGTAATGTGGAGATTAAGGAT----------------------------------------------------------------------------------------------CTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGCCCGGTTTACCACGGATGTCATCGGATCGTGCGCCTTCGGGTTGGAGTGCAACA
droSim2	3r:18049870-18049969 +			CTGCCGG------------AGGAGGGCTTCAA-GGAGGTGGACATGA-AGAAAGTGATGCAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTATGCCATTGACATCATAGCCTCGACTATCTTTGGCTTGGATGTGAATA
droSec2	scaffold_1:2098317-2098438 +			CGCCATC------------GAAAAGGCGGTAAAGGTAGGCGAAGTGGATAATGGGGATGTGGAGATCAAGGAT----------------------------------------------------------------------------------------------CTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGCCCGGTTCACCACGGATGTCATTGGAACGTGCGCCTTTGGGTTGGAATGCCACA
droYak3	3R:19375236-19375335 +			CTGCCGG------------AGGAGGGCTTCAA-GGAGGTGGATGTAA-AGAAAGTGATGCAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTATGCCATTGATATCATAGCCTCCACTATCTTTGGCTTGGATGTGAACA
droEre2	scaffold_4845:7415229-7415331 +			GAGGGTG---------CTCTAGACCAAAGCGA-CGAAGTGGAGATCA-AGGATGTGATGACC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCTATGCGGTAGACATCATTGGATCGGTGATTTTTGGCTTGGAGATAGACA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

dp5

TTACCCA------------AAGAGGGTAGCCA-GGAGATTGAAATGA-AGGAGTTGTTGTTAACGTGAGTCTAAAGAAG--G----------------GA-------------------------------------------ATAAGAT-----------------------------------------------------------------------CTCTTTTTGGGTTGTATACAGG-----------CAGATCTAATGCC------------CTCCTTT----------------------------------------------------------------ATCCCTCAGGTATGCTGTGGATATCATTGCCTCGACCATCTTTGGCCTGGATGTGGACA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
................................................................GTGAGTCTAAAGAAG--G----------------GA-------------------------------------------ATAAG.....................................................................................................................................................................................................................................................................	23	1	8.00	8	0	6	0	0	0	0	2	0	0	0
................................................................GTGAGTCTAAAGAAG--G----------------GA-------------------------------------------ATAAGA....................................................................................................................................................................................................................................................................	24	1	5.00	5	0	4	0	0	0	0	1	0	0	0
....................................................................................................................................................................................................................................................................TAATGCC------------CTCCTTT----------------------------------------------------------------ATCCCTCAGT.................................................	24	1	5.00	5	0	3	0	0	0	1	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTGGCCTGGATGTGGACA	22	1	4.00	4	0	3	0	0	0	0	1	0	0	0
................................................................GTGAGTCTAAAGAAG--G----------------GA-------------------------------------------AT........................................................................................................................................................................................................................................................................	20	1	2.00	2	0	1	0	0	0	0	1	0	0	0
.....................................................................................................................................................................................................................................................................AATGCC------------CTCCTTT----------------------------------------------------------------ATCCCTCAGT.................................................	23	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.........................GTAGCCA-GGAGATTGAAATGA-AGGA.....................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	1	0	0	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................TATCATTGCCTCGACCATCTTTGGC.............	25	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................GACCATCTTTGGCCTGGATGTGGACA	26	1	2.00	2	0	2	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................TAATGCC------------CTCCTTT----------------------------------------------------------------ATCCCTCAG..................................................	23	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.................................................................TGAGTCTAAAGAAG--G----------------GA-------------------------------------------ATAAG.....................................................................................................................................................................................................................................................................	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTGGCCTGGATGTGG...	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................TGAGTCTAAAGAAG--G----------------GA-------------------------------------------ATAAGA....................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................GTGAGTCTAAAGAAG--G----------------GA-------------------------------------------ATAA......................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0
...........................AGCCA-GGAGATTGAAATGA-AGG......................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................GTGAGTCTAAAGAAG--G----------------GA-------------------------------------------ATA.......................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..............................CA-GGAGATTGAAATGA-AGG......................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................TGCCTCGACCATCTTTGGCCT...........	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0

droPer2

TTACCCA------------AAGAGGGTAGCCA-GGAGATTGAAATGA-AGGAGTTGTTGTTAACGTGAGTGTAAAGAAG--G----------------GA-------------------------------------------ATGAGAT-----------------------------------------------------------------------CTCTTTTTTGGTTGTATACAGG-----------CAGATCTAATACC------------CTCCTTT----------------------------------------------------------------ATCCCTCAGGTATGCTGTGGATATCATTGCCTCGACCATCTTTGGCCTGGATGTGGACA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
................................................................GTGAGTGTAAAGAAG--G----------------GA-------------------------------------------ATGAGA....................................................................................................................................................................................................................................................................	24	1	1300.00	1300	0	12	1	4	11	1272
................................................................GTGAGTGTAAAGAAG--G----------------GA-------------------------------------------ATGAG.....................................................................................................................................................................................................................................................................	23	1	338.00	338	0	10	0	1	6	321
................................................................GTGAGTGTAAAGAAG--G----------------GA-------------------------------------------ATGA......................................................................................................................................................................................................................................................................	22	1	313.00	313	0	6	0	1	8	298
.................................................................TGAGTGTAAAGAAG--G----------------GA-------------------------------------------ATGAGA....................................................................................................................................................................................................................................................................	23	1	249.00	249	0	12	0	1	4	232
................................................................GTGAGTGTAAAGAAG--G----------------GA-------------------------------------------AT........................................................................................................................................................................................................................................................................	20	1	180.00	180	0	3	0	0	2	175
................................................................GTGAGTGTAAAGAAG--G----------------GA-------------------------------------------ATGT......................................................................................................................................................................................................................................................................	22	1	144.00	144	0	2	0	0	0	142
................................................................GTGAGTGTAAAGAAG--G----------------GA-------------------------------------------ATGAGT....................................................................................................................................................................................................................................................................	24	1	142.00	142	0	4	0	0	2	136
....................................................................................................................................................................................................................................................................TAATACC------------CTCCTTT----------------------------------------------------------------ATCCCTCAGT.................................................	24	1	132.00	132	0	91	0	14	17	10
................................................................GTGAGTGTAAAGAAG--G----------------GA-------------------------------------------ATG.......................................................................................................................................................................................................................................................................	21	1	103.00	103	0	3	0	0	3	97
.................................................................TGAGTGTAAAGAAG--G----------------GA-------------------------------------------ATGAG.....................................................................................................................................................................................................................................................................	22	1	55.00	55	0	8	0	2	2	43
................................................................GTGAGTGTAAAGAAG--G----------------GA-------------------------------------------ATGAGAT-----------------------------------------------------------------------............................................................................................................................................................................................	25	1	47.00	47	0	1	0	0	0	46
....................................................................................................................................................................................................................................................................TAATACC------------CTCCTTT----------------------------------------------------------------ATCCCTCAG..................................................	23	1	42.00	42	0	38	0	1	3	0
.....................................................................TGTAAAGAAG--G----------------GA-------------------------------------------ATGAGAT-----------------------------------------------------------------------CT..........................................................................................................................................................................................	22	1	18.00	18	0	3	0	0	0	15
.................................................................TGAGTGTAAAGAAG--G----------------GA-------------------------------------------ATGA......................................................................................................................................................................................................................................................................	21	1	16.00	16	0	1	0	0	1	14
................................................................GTGAGTGTAAAGAAG--G----------------GA-------------------------------------------ATGAGAA-----------------------------------------------------------------------............................................................................................................................................................................................	25	1	12.00	12	0	0	0	0	0	12
................................................................GTGAGTGTAAAGAAG--G----------------GA-------------------------------------------ATGAGAT-----------------------------------------------------------------------C...........................................................................................................................................................................................	26	1	10.00	10	0	0	0	0	0	10
.................................................................TGAGTGTAAAGAAG--G----------------GA-------------------------------------------ATGAGT....................................................................................................................................................................................................................................................................	23	1	9.00	9	0	0	0	0	1	8
................................................................GTGAGTGTAAAGAAG--G----------------GA-------------------------------------------ATGTTT....................................................................................................................................................................................................................................................................	24	1	9.00	9	0	0	0	0	0	9
................................................................GTGAGTGTAAAGAAG--G----------------GA-------------------------------------------ATGAGAT-----------------------------------------------------------------------CT..........................................................................................................................................................................................	27	1	8.00	8	0	0	0	0	0	8
................................................................GTGAGTGTAAAGAAG--G----------------GA-------------------------------------------..........................................................................................................................................................................................................................................................................	18	1	8.00	8	0	0	0	0	0	8
.................................................................TGAGTGTAAAGAAG--G----------------GA-------------------------------------------ATGAGAA-----------------------------------------------------------------------............................................................................................................................................................................................	24	1	7.00	7	0	0	0	0	1	6
.....................................................................................................................................................................................................................................................................AATACC------------CTCCTTT----------------------------------------------------------------ATCCCTCAGT.................................................	23	1	6.00	6	0	6	0	0	0	0
................................................................GTGAGTGTAAAGAAG--G----------------GA-------------------------------------------ATT.......................................................................................................................................................................................................................................................................	21	1	6.00	6	0	0	0	0	0	6
................................................................GTGAGTGTAAAGAAG--G----------------GA-------------------------------------------ATGAA.....................................................................................................................................................................................................................................................................	23	1	6.00	6	0	0	0	0	0	6
....................................................................................................................................................................................................................................................................TAATACC------------CTCCTTT----------------------------------------------------------------ATCCCTCA...................................................	22	1	5.00	5	0	5	0	0	0	0
................................................................GTGAGTGTAAAGAAG--G----------------GA-------------------------------------------ATTT......................................................................................................................................................................................................................................................................	22	2	4.50	9	0	0	0	0	0	9
.................................................................TGAGTGTAAAGAAG--G----------------GA-------------------------------------------ATG.......................................................................................................................................................................................................................................................................	20	1	4.00	4	0	0	0	0	1	3
.....................................................................................................................................................................................................................................................................AATACC------------CTCCTTT----------------------------------------------------------------ATCCCTCAG..................................................	22	1	4.00	4	0	4	0	0	0	0
..................................................................................................................................................................................................................................................................TCTAATACC------------CTCCTTT----------------------------------------------------------------ATCCCTC....................................................	23	1	3.00	3	0	3	0	0	0	0
......................................................................GTAAAGAAG--G----------------GA-------------------------------------------ATGAGA....................................................................................................................................................................................................................................................................	18	1	3.00	3	0	0	0	0	0	3
................................................................GTGAGTGTAAAGAAG--G----------------GA-------------------------------------------ATGTT.....................................................................................................................................................................................................................................................................	23	1	3.00	3	0	0	0	0	0	3
................................................................GTGAGTGTAAAGAAG--G----------------GA-------------------------------------------A.........................................................................................................................................................................................................................................................................	19	1	3.00	3	0	0	0	0	0	3
.................................................................TGAGTGTAAAGAAG--G----------------GA-------------------------------------------AT........................................................................................................................................................................................................................................................................	19	1	3.00	3	0	1	0	0	0	2
...............................A-GGAGATTGAAATGA-AGGAGTTGTT...............................................................................................................................................................................................................................................................................................................................................................	25	1	3.00	3	3	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................GTATGCTGTGGATATCATTGCCT...........................	23	1	3.00	3	3	0	0	0	0	0
....................................................................................................................................................................................................................................................................TAATACC------------CTCCTTT----------------------------------------------------------------ATCCCTC....................................................	21	1	3.00	3	0	3	0	0	0	0
...................................................................AGTGTAAAGAAG--G----------------GA-------------------------------------------ATGAGA....................................................................................................................................................................................................................................................................	21	1	3.00	3	0	0	0	0	0	3
................................................................GTGAGTGTAAAGAAG--G----------------GA-------------------------------------------ATGAGAA-----------------------------------------------------------------------A...........................................................................................................................................................................................	26	1	3.00	3	0	0	0	0	0	3
.........................GTAGCCA-GGAGATTGAAATGA-AGGA.....................................................................................................................................................................................................................................................................................................................................................................	25	1	3.00	3	0	1	0	0	0	2
................................................................GTGAGTGTAAAGAAG--G----------------GA-------------------------------------------ATGAT.....................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	2
...................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTGGCCTGGATGTGGACA	22	1	2.00	2	0	0	1	0	0	1
...................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTGGCCTGGATGTGGAC.	21	1	2.00	2	2	0	0	0	0	0
..................................................................GAGTGTAAAGAAG--G----------------GA-------------------------------------------ATGAGA....................................................................................................................................................................................................................................................................	22	1	2.00	2	0	1	0	0	0	1
.................................................................TGAGTGTAAAGAAG--G----------------GA-------------------------------------------ATGAGAA-----------------------------------------------------------------------AA..........................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	2
................................................................GTGAGTGTAAAGAAG--G----------------GA-------------------------------------------ATGAGG....................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	2
...........................AGCCA-GGAGATTGAAATGA-AGGA.....................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	2
..................................................................................................................................................................................................................................................................TCTAATACC------------CTCCTTT----------------------------------------------------------------ATCCCT.....................................................	22	1	2.00	2	1	1	0	0	0	0
................................................................GTGAGTGTAAAGAAG--G----------------GA-------------------------------------------ATGAGC....................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	1	0	1
.....................................................................................................................................................................................................................................................................AATACC------------CTCCTTT----------------------------------------------------------------ATCCCTCAGG.................................................	23	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................ATCTAATACC------------CTCCTTT----------------------------------------------------------------ATCCCTC....................................................	24	1	1.00	1	0	0	0	0	1	0
......................................................................GTAAAGAAG--G----------------GA-------------------------------------------ATGAGAT-----------------------------------------------------------------------CT..........................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
.........................................................................................................................................................................................................................................................................................................................................................................................TGCCTCGACCATCTTTGGCCTG..........	22	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................TCTTTTTTGGTTGTATACAGG-----------C..........................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
.......................GGGTAGCCA-GGAGATTGAAATGA-AGG......................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................CATTGCCTCGACCATCTTTGGC.............	22	1	1.00	1	0	1	0	0	0	0
.....CA------------AAGAGGGTAGCCA-GGAG....................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
.....................GAGGGTAGCCA-GGAGATTGA...............................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
..................................................................................................................................................................................................................................................................TCTAATACC------------CTCCTTT----------------------------------------------------------------ATCCC......................................................	21	1	1.00	1	0	1	0	0	0	0
....................................................................GTGTAAAGAAG--G----------------GA-------------------------------------------ATGAG.....................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
...........................AGCCA-GGAGATTGAAATGA-AGGAGTT..................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
.........................GTAGCCA-GGAGATTGAAATGA-AGGAGTT..................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................CTAATACC------------CTCCTTT----------------------------------------------------------------ATCCCTCAG..................................................	24	1	1.00	1	0	1	0	0	0	0
.....CA------------AAGAGGGTAGCCA-GGAGATTGA...............................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
.....................................................................TGTAAAGAAG--G----------------GA-------------------------------------------ATGAGAT-----------------------------------------------------------------------C...........................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................................................................................................................................TAATACC------------CTCCTTT----------------------------------------------------------------ATCCCTCCTT.................................................	24	1	1.00	1	0	0	0	1	0	0
.................................................................TGAGTGTAAAGAAG--G----------------GA-------------------------------------------ATGT......................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................................................................................................................................................................................................................................................................GTATGCTGTGGATATCATTGCCC...........................	23	1	1.00	1	1	0	0	0	0	0
................................................................GTGAGTGTAAAGAAG--G----------------GA-------------------------------------------ATGATT....................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
.........................GTAGCCA-GGAGATTGAAATGA-AG.......................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
................................................................GTGAGTGTAAAGAAG--G----------------GA-------------------------------------------ATGC......................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
.........................................AAATGA-AGGAGTTGTTGTTAAC.........................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
....................................GATTGAAATGA-AGGAGTTGTTGTT............................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................................................................................................................TCTTTTTTGGTTGTATACAGG-----------...........................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
...............................A-GGAGATTGAAATGA-AGGAGTTGTC...............................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.........................GTAGCCA-GGAGATTGAAATGA-AGGAGT...................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
.................................GGAGATTGAAATGA-AGGAGTT..................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
........................GGTAGCCA-GGAGATTGAAATGA-AGG......................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................AATACC------------CTCCTTT----------------------------------------------------------------ATCCCTCAGTA................................................	24	1	1.00	1	0	1	0	0	0	0
.........................GTAGCCA-GGAGATTGAAATG...........................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
......................................................................GTAAAGAAG--G----------------GA-------------------------------------------ATGAGAT-----------------------------------------------------------------------C...........................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
.................................................................TGAGTGTAAAGAAG--G----------------GA-------------------------------------------ATGAGAT-----------------------------------------------------------------------CC..........................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
...................................................................................................................................................................................................................................................................CTAATACC------------CTCCTTT----------------------------------------------------------------ATCCCTCAGT.................................................	25	1	1.00	1	0	0	1	0	0	0
.................................................................TGAGTGTAAAGAAG--G----------------GA-------------------------------------------ATGAT.....................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................................................................................................................................TAATACC------------CTCCTTT----------------------------------------------------------------ATCCCTCAGC.................................................	24	1	1.00	1	0	1	0	0	0	0
.........................GTAGCCA-GGAGATTGAAATGA-A........................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
.................................................................TGAGTGTAAAGAAG--G----------------GA-------------------------------------------ATGAGAT-----------------------------------------------------------------------CT..........................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
.................................................................TGAGTGTAAAGAAG--G----------------GA-------------------------------------------ATGAGAA-----------------------------------------------------------------------A...........................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................................................................................................................................TAATACC------------CTCCTTT----------------------------------------------------------------ATCCCTCAGTA................................................	25	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................TCTAATACC------------CTCCTTT----------------------------------------------------------------ATCC.......................................................	20	1	1.00	1	0	0	0	1	0	0
................................................................GTGAGTGTAAAGAAG--G----------------GA-------------------------------------------ATGAGAT-----------------------------------------------------------------------T...........................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................................................................................................................................TAATACC------------CTCCTTT----------------------------------------------------------------ATCCC......................................................	19	1	1.00	1	0	1	0	0	0	0
....................................................................GTGTAAAGAAG--G----------------GA-------------------------------------------ATGAGAT-----------------------------------------------------------------------............................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
.................................................................TGAGTGTAAAGAAG--G----------------GA-------------------------------------------ATGAA.....................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
................................................................GTGAGTGTAAAGAAG--G----------------GA-------------------------------------------ATGAGAT-----------------------------------------------------------------------A...........................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
.....................................................................................................................................................................................................................................................................................................................................................................................................CTTTGGCCTGGATGTGGACA	20	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................TAATACC------------CTCCTTT----------------------------------------------------------------ATCCCTCAGG.................................................	24	1	1.00	1	0	1	0	0	0	0
.................................................................TGAGTGTAAAGAAG--G----------------GA-------------------------------------------ATTT......................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	1

droWil2

TTGCCAC------------AGGAAGGTAGCAA-GGAGATTGACATTA-AGCAATTATTAACCACGTGAGTTGTCCAG---------------------GA-------------------------------------------ATTCAATCTATTGAAT------TTGTTTGCA---------------------------------------------------------------TT-------------------CCGAATA--------------TTA--------------------------------------------------------------TTCTG--TTTTTCAGCTATGCCATTGACATCATAGGTTCGACCATTTTTGGCCTGGACGTGGATA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
No Reads

droVir3

ATACAGC------------AGTCGGGCACTGT-GGAAATCGATGTAA-AGAACTTGATGTCATGGTAGGTTAGCAGTCGAC-TTTG-----------------------------------------------------------------------------------------------------------------------------------------------CAGTGGAGT--ATTTCATGCTTAGACAAATTTC--TCCCCTTCT------C--------------------------------------------------------------CGTTTGC--ACTTTTAGCTTTGTGATTGACATTATTGCCTCGACCATATTTGGCCTGGATGTGGACA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells	SRR2096013 Ovary_Strain_9_oxidized	SRR2096014 Ovary_Strain_160_oxidized	SRR2096026 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096038 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096050 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096055 Ovary_Min_43	SRR2096056 Ovary_Min_46	SRR2096057 Ovary_Min_50	SRR2096058 Ovary_Min_98	SRR2096059 Ovary_Min_164	SRR2096060 Ovary_Min_193	SRR2096061 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096072 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096079 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096080 embryo_0-2h from 15to16 day old nondysgenic mothers	SRR2096081 embryo_0-2h from 15to16 day old nondysgenic mothers
.......................................CGATGTAA-AGAACTTGATGT.............................................................................................................................................................................................................................................................................................................................................................	20	1	3.00	3	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................CGGGCACTGT-GGAAATCGATGT............................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.........................GCACTGT-GGAAATCGATGT............................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0
........................................GATGTAA-AGAACTTGATGTC............................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0
..................................GAAATCGATGTAA-AGAACTTGATGTC............................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................CGATGTAA-AGAACTTGATGTC............................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.....................................ATCGATGTAA-AGAACTTGAT...............................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................AATCGATGTAA-AGAACTTGATGT.............................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......C------------AGTCGGGCACTGT-GGAA....................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................AATCGATGTAA-AGAACTTGAT...............................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0
..ACAGC------------AGTCGGGCACTGT-GGAAAT..................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................CACTGT-GGAAATCGATGTAA-AG.......................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
....AGC------------AGTCGGGCACTGT-GGA.....................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................CGATGTAA-AGAACTTGAT...............................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TCGACCATATTTGGCCTGGATGT.....	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................GGCACTGT-GGAAATCGATGTA...........................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
ATACAGC------------AGTCGGGCACT...........................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...CAGC------------AGTCGGGCACTGT-GGAAATC.................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................GGGCACTGT-GGAAATCGATGTAA-.........................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................TGTAA-AGAACTTGATGTCAT..........................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................GGCACTGT-GGAAATCGATGT............................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................GTCGGGCACTGT-GGAAATCGATGT............................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................GT-GGAAATCGATGTAA-AGAACTT..................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................TTGACATTATTGCCTCGACCA.....................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................CGGGCACTGT-GGAAATCGATGTAA-.........................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.TACAGC------------AGTCGGGCACTGT-........................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................TGTAA-AGAACTTGATGTCA...........................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
ATACAGC------------AGTCGGGCACTGT-........................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
....AGC------------AGTCGGGCACTGT-GGAAAT..................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................GCACTGT-GGAAATCGATGTAA-AGAACTTGA................................................................................................................................................................................................................................................................................................................................................................	30	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................CGGGCACTGT-GGAAATCGATGTAA-AG.......................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
ATACAGC------------AGTCGGGCACTGG-........................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................TGCCTCGACCATATTTGGCCTGGATG......	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..ACAGC------------AGTCGGGCACTGT-G.......................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................TTATTGCCTCGACCATATTT................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....AGC------------AGTCGGGCACTGT-GGAAATCGAT..............................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CTACAGC------------AGTCAGGCGCAAC-TGAAATCGATATGA-AGAATTTAATGGCATGGTAAGCAACTGTT-----TGTG----------------------------------------------------------------------------------------C-----------------------------------------------ATTACCTTAGCT----TCATG-----------AAGATCCTTCATT------------TCCCCAT----------------------------------------------------------------TGCTTTCAGCTATGGTATTGATATCATTGCCTCCACTATACTTGGTTTGGATGTGGACA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...........................GCAAC-TGAAATCGATATGA-AGA......................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	1	0	0	0	0	1
CTACAGC------------AGTCAGGCGCAAC-........................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................GTATTGATATCATTGCCTCCACTAT....................	25	1	1.00	1	1	0	0	0	0	0
...........................................ATGA-AGAATTTAATGGCAT..........................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
.........................GCGCAAC-TGAAATCGATATGA-AGA......................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
....AGC------------AGTCAGGCGCAAC-TGAAATC.................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................ATTGATATCATTGCCTCCACT......................	21	1	1.00	1	1	0	0	0	0	0
..................................GAAATCGATATGA-AGAATTTAATGGC............................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................AGATCCTTCATT------------TCCCCAT----------------------------------------------------------------TGCTTTCAG..................................................	28	1	1.00	1	1	0	0	0	0	0

droGri2

ATGCAGC------------GGTCAGGCACTGT-AGAAGTCGATATGA-AGAATTTGATGTCATCGTAAGCAATTTTT-GAA-AAT-ACACACATTTAC--------------------------------------------------------TGGAT------ATATATGTA----------------------------------------------------------------------------------------TTTTCCCGCCT------------T--------------------------------------------------------GAACTGT--TTTTTCAGCTATGCTATTGATATTATTGCCTCGACGATATTTGGCCTAGATGTGGACA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droAna3

GTTCCAA------------AAACAGGAAGCAT-AGAGTTGGAGATGA-AGGCCTGGATGTCCACGTAAGTCGTGGCAA------------------------------------------------------------------------------------------------------------------------------------------------TCTTCTTCAGCTCCAA--AAT-----------TAATCCTAATA--------------CTACTT------------------------------------------------------------------TATCGTAGATATGCCATCGATATCATAGCCTCAACCATTTTTGGACTTGAAGTGGACA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.....AA------------AAACAGGAAGCAT-AGAGT...................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0

droBip1

CTGCCCC------------AATCGGGCAGCAA-GGAAGTGGAAATAA-AGGAACTTTTTGCCACGTGAGTCAATGAA----------------------------------------------------------------------GAT-----------------------------------------------------------------------CTTTTC--AAG----------------ATTGGA---ACCCAAAA--------------AC--------------------------------------------------------------ACTCGT--CCTCCTAGGTATGCTGTTGACATCATTGGCTCGACCATTTTCGGCCTGGATGTGGACA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GAATGTG---------AGCAGTCCGGGGGCAA-GGAATTGGACATGA-AGAGCGTCATGACAACGTGAGTTGGCGGAAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTGATT------------CTCTCAGTGCACCCTGGAAATTTGTTTATCTCTGGAACGTAAATTTCAATTATATTTGGTTTTTATTCGTTCCTCCCTAGTTACGCGATTGATATAGTTGCCTCGACTATTTTTGGCCTGGAGGTAGACA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CTCCCAG------------AACAAGGTTTCAA-GGAGGTGGATCTCA-AGAAAGTGATGCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTATGCCATCGATATAATTGCTTCGACTATTTTTGGTTTGGATGTGAATA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CTACCTG------------AGACAGGCATCAA-AGAGCTGGATATCA-AGAGTCTAACGTCAACGTAGGTTAAAAACTT--C----------------GAGTGAAATATAGAAAATATAAGGGTTTTATCAAACGTTTAAGACCATTAAACCATTTCAA------ATGCTTGCATCTCTCGCTATAACTGCTGACCTTACCAGAGAAAAAACGAATAAGCTCAATTTT---------------------------------------------------T--------------------------------------------------------------TATTCCT--ACTCCCAGCTATGCTATTGATATTATTGCCTCGACTATTTTCGGCCTTGATGTTGATA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CAGCATCTTGCAGTGGTTCTGGACCAGACCGA-CGAAGTGGAGATAA-AAGATGTGATGACC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGTATGCGGTTGACATTATTGGATCGGTGATCTTCGGCTTGGAGATCGACA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CTGCCAG------------AGAAGGATTTCGA-GGAGGTGGATCTCA-AGAAGGTGATGCAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACTACGCTATCGACATTATTGCCTCGACCATCTTTGGCTTGGACGTAAACA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TCCCC-C------------AGGGGGGCAACAA-GGAGGTGGACATCA-AGAAACTAATGTCAACGTAAGTTATTGGAAT-------ATTAATATTAAT--------------------------------------------------------CCGAA------GAGAAAGAT----------------------------------------------------------------------------------------TATAACGATCTTCATTTCTTCTTA----------------------------------------------------------------ATCCGCCAGATATGCCATCGATATCATTGGCACGACTATTTTTGGACTTAATGTCGATA	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TTGCCTG------------AGACGGGCAGCAA-GGAG-TTGATATCA-AGAGTCTAATGTCAACGTAAGTCAAAGGATT----------------AAA--------------------------------------------------------AGGATAACAAAGTTTTTATACCTCCTTTAATAGTTGCTGAACTTATA--------------------------------T----T---A-----------AATAACTAATATT------------CT-------------------------------------------------------------AATTCCA--ACCCGTAGATATGCCATCGATATTATTGCCACAAGCATTTTTGGCCTTGACGTTGATA	Size	Hit Count	Total Norm	Total
No Reads

dm3

TGCCATG------------GACAAGGCGGTGAAGGAGGCCAAAGTGGAGGAGGGTAATGTGGAGATTAAGGAT----------------------------------------------------------------------------------------------CTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGCCCGGTTTACCACGGATGTCATCGGATCGTGCGCCTTCGGGTTGGAGTGCAACA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................TCGTGCGCCTTCGGGTTGGAGTGC....	24	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TCGTGCGCCTTCGGGTTGGAGTG.....	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TGCCATG------------GACAAGGCGGTGAAG.......................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................TTTACCACGGATGTCATCGGATC..........................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.....................................................GTAATGTGGAGATTAAGGAT----------------------------------------------------------------------------------------------..................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................GAGGCCAAAGTGGAGGAGG....................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................CACGGATGTCATCGGATCGTGC......................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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................................................GGAGGGTAATGTGGAGATTAAGGAT----------------------------------------------------------------------------------------------C.................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................TGTGGAGATTAAGGAT----------------------------------------------------------------------------------------------CTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGCCCGG.................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................TGTCATCGGATCGTGCGCCTT.................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................AGGCGGTGAAGGAGGCCAA...............................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
....................................................GGTAATGTGGAGATC......................................................................................................................................................................................................................................................................................................................................................	15	6	0.33	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................GATGTCATCGGATCGTAAC.....................	19	14	0.14	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

CTGCCGG------------AGGAGGGCTTCAA-GGAGGTGGACATGA-AGAAAGTGATGCAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTATGCCATTGACATCATAGCCTCGACTATCTTTGGCTTGGATGTGAATA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...........................TTCAA-GGAGGTGGACATGA-AGAAA....................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................AA-GGAGGTGGACATGA-AGAAAGTGAT...............................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................CGACTATCTTTGGCTTGGATGT.....	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................CCTCGACTATCTTTGGCC............	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................CGACTATCTTTGGCTTGGATG......	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
..........................CTTCAA-GGAGGTGGACATGA-AG.......................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

CGCCATC------------GAAAAGGCGGTAAAGGTAGGCGAAGTGGATAATGGGGATGTGGAGATCAAGGAT----------------------------------------------------------------------------------------------CTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGCCCGGTTCACCACGGATGTCATTGGAACGTGCGCCTTTGGGTTGGAATGCCACA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.......................................................GATGTGGAGATCAAGGAT----------------------------------------------------------------------------------------------C.................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
.............................................GGATAATGGGGATGTGGG..........................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1

droYak3

CTGCCGG------------AGGAGGGCTTCAA-GGAGGTGGATGTAA-AGAAAGTGATGCAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTATGCCATTGATATCATAGCCTCCACTATCTTTGGCTTGGATGTGAACA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
CTGCCGG------------AGGAGGGCTTCAA-GGAGGTGG................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.TGCCGG------------AGGAGGGCTTCAA-GGAGGTGGAT..............................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................CTTCAA-GGAGGTGGATGTAA-AGAAA....................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................TATCTTTGGCTTGGATGTGAACA	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

GAGGGTG---------CTCTAGACCAAAGCGA-CGAAGTGGAGATCA-AGGATGTGATGACC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCTATGCGGTAGACATCATTGGATCGGTGATTTTTGGCTTGGAGATAGACA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..............................GA-CGAAGTGGAGATCA-AGGATGTGATG..............................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0	0
......................................................................................................................................................................................................................................................................................................................................................................................CATTGGATCGGTGATTTTTGGC.............	22	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................CCTATGCGGTAGACATCATT...............................	20	1	1.00	1	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................TTGGCTTGGAGATAGTA.	17	18	0.06	1	0	0	0	0	0	0	1

dps_522

2:13541166-13541241 -

candidate-rescued

Mirtron

antisense_to_intron

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-20.2	-19.5