ID:

dps_514

 Coordinate:

2:13076597-13076747 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-17.0 -16.5 -16.3 -16.1

Flybase annnotation

exon [dpse_GLEANR_5522:3]; CDS [Dpse\GA21945-cds]

Repeatable elements

NameClassFamilyStrand
(CAG)nSimple_repeatSimple_repeat+
mature
  1. dps_514  2:13076660-13076680 +
  2. XL_group3a:799823-799843 -
  3. XL_group1a:2563787-2563807 +
star

Sense Strand Reads

###########################################################################################################################################################################################################################################################
TGCCAGCTCGAGCGGACCCGCCCCCACATCAGCGCCCAAGCAGCGCGAAGGTACTAACAGCAATAACAATAGCTCCAACTCCAGCAGCAGCCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGGGCGGCAGCAGCAATCCCAACAACAGCAATGCCTCCTCCTCCGCCTCCGCCTCAGCCTCCGCGGCCACCTCCTCGAACGGGCTGTTCGACGGCACCGCGCAGGCGCACTACGCGGCCTCCA
*******************************************************....((.............................((.((.((.((.((.((.......)).)).)).)).)).)))).********************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M059
embryo
 M040
female body
 GSM343916
embryo
 SRR902012
CNS imaginal disc
 SRR902011
testis
 V112
male body
.................................................................................................................AGCAGCAGCAGCAGCAGGGCG..................................................................................................................... 21 0 3 1.33 4 0 0 1 0 2 1
.......................................................AACAGCAATAACAATAGCTCCAACTCC......................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................................................................................................CGGGCTGTTCGACGGCACCGCGCAG................... 25 0 1 1.00 1 0 1 0 0 0 0
...........................................................................................................................................................................................................CGAACGGGCTGTTCGACGGCACC......................... 23 0 1 1.00 1 0 0 0 1 0 0
.............................................................AATAACAATAGCTCCAACTCCAGCAGC................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................................................................................GTTCGACGGCACAGCGCA.................... 18 1 1 1.00 1 0 0 1 0 0 0
................................................................................................................................................................................................GGCCACCTCCTCGAACGGGCTGTT................................... 24 0 1 1.00 1 0 1 0 0 0 0
.................................................GGTACTAACAGCAATAACAATAGCTCC............................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................................................................................................CGGGCTGTTCGACGGCACCGC....................... 21 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................................GCAGCAACAGCAGCAGCAGCAGCAGGG....................................................................................................................... 27 0 2 0.50 1 0 1 0 0 0 0
...........................................................................................................AGCAACAGCAGCAGCAGCAGCAGGGC...................................................................................................................... 26 0 2 0.50 1 0 0 1 0 0 0
....................................................................................................CAGCAGCAGCAACAGCAGCAGCA................................................................................................................................ 23 0 20 0.15 3 0 2 1 0 0 0
............................................................................................................GCAACAGCAGCAGCAGCAG............................................................................................................................ 19 0 20 0.10 2 0 2 0 0 0 0
.........................................................................................................GCAGCAACAGCAGCAGCAGCAGCAGG........................................................................................................................ 26 0 14 0.07 1 0 1 0 0 0 0
.........................................................................................................................................................................................................CTCGAACGGGCTGGTCATC............................... 19 3 17 0.06 1 0 1 0 0 0 0
.........................................................................................................................................GCAGCAATCCGAAGAACA................................................................................................ 18 2 19 0.05 1 0 1 0 0 0 0
.............................................................................................................CAACAGCAGCAGCAGCAGC........................................................................................................................... 19 0 20 0.05 1 0 0 1 0 0 0
...................................................................................................GCAGCAGCAGCAACAGCAGCA................................................................................................................................... 21 0 20 0.05 1 0 0 0 1 0 0
.........................................................................................GCCAGCAGCAGCAGCAGCAGC............................................................................................................................................. 21 0 20 0.05 1 0 1 0 0 0 0
.........................................................................................GCCAGCAGCAGCAGCAGCA............................................................................................................................................... 19 0 20 0.05 1 0 1 0 0 0 0
................................................................................................................CAGCAGCAGCAACAGCGGGGCG..................................................................................................................... 22 2 20 0.05 1 0 0 0 0 0 1
.......................................................................................................CAGCAGCAACAGCAGCAGCAG............................................................................................................................... 21 0 20 0.05 1 0 1 0 0 0 0

Anti-sense strand reads

ACGGTCGAGCTCGCCTGGGCGGGGGTGTAGTCGCGGGTTCGTCGCGCTTCCATGATTGTCGTTATTGTTATCGAGGTTGAGGTCGTCGTCGGTCGTCGTCGTCGTCGTCGTTGTCGTCGTCGTCGTCGTCCCGCCGTCGTCGTTAGGGTTGTTGTCGTTACGGAGGAGGAGGCGGAGGCGGAGTCGGAGGCGCCGGTGGAGGAGCTTGCCCGACAAGCTGCCGTGGCGCGTCCGCGTGATGCGCCGGAGGT
*********************************************************************************************************************....((.............................((.((.((.((.((.((.......)).)).)).)).)).)))).******************************************************* 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902010
ovaries
 V112
male body
.............................................................................................................................................................................................................TTGTCCGAGAAGCTGCCGT........................... 19 2 2 1.00 2 2 0 0
............................................................................TTGAGGTCGTCGTCGGGC............................................................................................................................................................. 18 1 2 0.50 1 1 0 0
...............................................................................................................................................TAGGGTGGTAGTCGTTAC.......................................................................................... 18 2 8 0.13 1 1 0 0
....................................................................................................................................GCCGTCGAAGTTAGGGTT..................................................................................................... 18 2 10 0.10 1 1 0 0
...............................................................................................................................................................ACGGAGGAGGAGGGGGAGGCGGAGGCC................................................................. 27 3 11 0.09 1 0 1 0
........................................................................................................................................TCGACGTAAGGGTTGTTG................................................................................................. 18 2 12 0.08 1 0 0 1
.....................GTGGTGTAGTCGGGGGTT.................................................................................................................................................................................................................... 18 2 16 0.06 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 2:13076547-13076797 + dps_514 TGCC--AGCTCG-------------------AGC---GGACCCGCCCCCACATCAGCGCCCAAGCAGCGCGAAGGTACTAACAGCAATAACAAT---------------------------AGCTCCA------ACTCC---AGCAGCAGCCAGCAG-------------------------------CAGCAGCAGCAGC----------------------------AACA---------------------GCAG--CAG-CAGCAG-----------CA---GGGCGGCAGCAGCA---A---TCC---------------CAACAACAGCAATGCCTCCTCCTCCGCCTCCG------------------------------------------------CCTCAGCCTCCGCGGC---CACCTCCTCGAACGGGCTGTTCGACGGCACCGCGCAGGCGCACTACGCGGCCTCCA
droPer2 scaffold_0:7377500-7377753 - TGCC--AGCTCG-------------------AGC---GGACCCGCCCCCACATCAGCGCCCAAGCAGCGCGAAGGTACTAACAGCAATAACAAT---------------------------AGCTCCA------ACTCC---AGCAGCAGCCAGCAG-------------------------------CAGCAGCAGCAA-------------------------------CA---------------------GCAG--CAG-CAGCAG-----------CA---GGGCGGCAGCAGCA---A---TCC---------------GAACAACAGCAATGCCTCCTCCT------CCGCC---------------------------------TCCGCCTCCG---CCTCAGCCTCCGCGGC---CACCTCCTCGAACGGGCTGTTCGACGGCACCGCGCAGGCGCACTACGCGGCCTCCA
droWil2 scf2_1100000004943:14092099-14092403 - dwi_3502 AGGCAGCTCAACATCTTCGGCCCACACATCCAGC---GGACCCAATCAAACATCAACGCCAAAGCAGCGCGAAGGTACGACAAACCAGAATAATC---------------------CT---AGTTCCA------ACAAC---A-CAGCCACCAGCAA-------------------------------CAGCAACAGCAAC---AACAACA---ACACTGCCAGCCACCAACAGCAGCAACAACAGCAACA------------GCAGCAG-------------------CAGCAGCAACAAC----CAAA---------------CACAAATAGCAATGCCTCCT------CCGCCTCCGCATCCA---------------------------------------CCTCCGGCTCAGCATC---GGCCACCTCGAATGGCCTGTTCGATGGCACGGCTCAGGCCCACTATGCGGCG---A
droVir3 scaffold_13047:10015755-10016026 - CGCA--G-CTGCAGCGC------ATGCGGCCAGCGCTGGACCGGCGCAATCGTCTGCGCCCAAGCAGCGCGAAGGTAGTACTAACAACAACAACA------ATAATA---------CAAATAGCTCAA------ATAGC---AGCAGCAAC-GGCAGCAGCGCCGGCAACCAAGCG---CCGCAGCAGCAGCAGC---------------A-------------------------GCAACAGCA---------GCAGCA---GCAGCAG-----------CA---AAGC------------------------------------AACAACAGCAATGCCTCCTCAT---CC---------------------------------------------------------GCCTCCG---C---CTCAACGTCGAACGGCCTATTCGATGGCACCGCCCAGGCCCACTATGCGGCC---A
droMoj3 scaffold_6540:9345157-9345443 + dmo_1876 CCCG--ACCGCGGCGCA-------CGCGGGCAGCGCCGGACCGGCCCAATCCTCGGCGCCCAAGCAGCGTGAAGGTACGAACAATACGAATAGCT---------------------C---------AA------ATAGC---AGCAGCAGC-------AGC---GGCAGTCAAGCGACGTCGCAG---CAGCAGCAGCAGCAGCAG---CA---GC-------------AACAGCAGCAGCAGCAACAGCA------------GCAGCAG--------CAGCA---AAA------------------------------------TAGCAACAGCAATGCCTCCTCCTCAACC------GCCTCCG---------------------------------------CCTCAGTGTCCGCATC---G---ACGTCGAACGGCCTGTTCGATGGCACCGCCCAGGCGCACTATGCGGCC---A
droGri2 scaffold_14906:7439584-7439855 + TGCC------------------------GGCAGCGCTGGACCCGCCCAATCCTCGGCGCCCAAGCAGCGCGAAGGTAGTACTAACAACAACAACAACACCAACAATA---------CAAATAGCTCAA------ATAGC---AGCAGTAGC-------AGC---GCCAATCAAGCG---CCGCAGCAGCAGCAGC---------------AGCAAC-------------AACA---------------------GCAGCA---GCAACAG-----------CA---GAATAGCAACAACAACAAC---AA---------------CAACAACAGCAATGCCTCCTCAT---CC---------------------------------------------------------GCATCCGCATC---G---ACATCGAATGGACTATTCGATGGGACCGCCCAGGCGCACTATGCGGCG---A
droAna3 scaffold_13340:21447790-21448088 - TGCC--AGCGGCTCCTC----------CGGCACC---GGACCCACCCAGTCCTCGGCGCCGAAACAACGCGAAGGTACTAGC------TCTAATC---------------------CC---AGCTCCAACTCCAACTCC---ACCAGCAGCCAACAG-------------------------------CAGCAGCAGCAACAGC----------------------------A---------------------GCAG--CAG-CAGCAACAGAGCAGCGG-----GAGCAGCAGCAACAGCAACAACAC---------------CACCAGCAGCAACAACTCCGCCTCGTCCGCCGCAGCAGCAGC------------------CGCT---GCCGC---CGCCGCCGCCGCATCCGCGAA---TACGTCCTCCAATGGACTGTTCGATGGGACGGCGCAGGCCCACTATGCCTCC---A
droBip1 scf7180000396413:1088878-1089161 + TGCC--AGCGGCTCCTC----------CGGCAGC---GGGCCCACCCAGTCCTCGGCGCCGAAACAACGCGAAGGTACTAGC------TCTAATC---CCAGCT------------CC---AGCTCCA------ACTCC---ACCAGCAGCCAACAG-------------------------------CAGCAGCAGCAGC----------------------------AACA---------------------GCAG--CAG-CAGCAACAGAGTAGCGG-----GAGCAGCAGCAACAGCAACACCA------------------CCAGCAGCAACAACTCCGCCTCCTCCGCC---GCAGCAG---------------------------------CCGTAGCCGCCGCGTCCGCGAA---TACCTCCTCCAATGGACTGTTCGATGGGACGGCGCAGGCCCACTATGCCTCC---A
droKik1 scf7180000302313:563358-563677 + CGCG--AACGGCTCCTC----------CGGCAGC---GGACCCAGCCAGAGTTCGGCGCCCAAGCAGCGCGAAGGTACTACC------ACTAATC---------------------CC---AGCTCCA------ACTCC---AGTAGCAGCCAGCAG-------------------------------CAGCAGCAACAGTCGCAG---CA---GC-------------AATCGCAGCAACAGCA------------------GCAGCAG-----------CA---GGGCAGCAGCAACAGTAACAACAA---------------CGCCAGCAGTAACTCCTCCGCCTCATCCGCCGCCGCAGCAGCAGCAGCAGCTGCCGCCGCCTCCCTGTCCGCCTCTGCAG---CCG---CCGCAGC---CACGTCCTCGAACGGTTTGTTTGAGGGCACGGCCCAGGCGCACTATGCCTCCCAGA
droFic1 scf7180000454106:589997-590274 + TGCG--AGCGGATCCTC----------GAGCGGC---GGCGCCACCCACACGTCGGCGCCCAAGCAGCGCGAAGGTACGAGCAGCACCACTAATT---------------------CC---AGCTCCA------ACTCCACCAGCAGCAGTCAGCAG-------------------------------CAGCAGCAACAGCAGCAG---CA---GC-------------A------GCAACA---------------------GCAGCAG-----------CA---GAGCAGCAGCAGCAGCAACAACAC---------------CGCCAGCAGCAACACCTCCGCCTCCGCATCCGC---AG---------------------------------------------CAGCCTCCGCGTC---CACATCCTCCAACGGACTGTTCGAGGGCACCGCGCAGGCGTACAGCAGTGGTGCGA
droEle1 scf7180000491212:1861265-1861551 + TGCG--AGCGGATCCTC----------CGGCAGC---GGCGCCACCCACACGTCGGCGCCCAAGCAGCGCGAAGGTACTACCAGCACCACTAATT---------------------CC---AGCTCCA------ACTCCACCAGCAGCAGTCAGCAG-------------------------------CAGCAGCAACAGC-------------------------------A---------------------GCAGCA---GCAGCAG-----------CA---GAGTAACAGCAACAGCAACACCAA---------------CGCCAGCAGCAACACATCCGCCTCGTCCGCCGCAGCAGCAGC------------------TTCTTTGTCCGCCGCCGCTGCAGCCGCCTCCGCAGCGAGTCAATCCTCGAACGGATTGTTCGACGGCACGGCGCAGGCGT---------------
droRho1 scf7180000779418:41145-41437 + TGCG--AGCGGATCCTC----------CGGCAGC---GGCACCACCCACACGTCGGCGCCCAAGCAGCGCGAAGGTACTACCAGCACCACTAATT---------------------CC---AGCTCCA------ACTCC---AGCAGCAGTCAGCAG-------------------------------CAGCAGCAACAGC---------A---GC-------------AACA---------------------GCAG--CAG-CAGCAA-----------CA---GAGCAGCAGCAACAGCAACACCAC---------------CGCCAGCAGCAACACCTCCGCCTCGTCCGCCGCAGCAGCAGC------------------ATCCCTGTCCGCCGCCGCTGCCGCCGCCTCCGCAGC---CACATCCTCGAACGGACTGTTCGACGGAACGGCGCAGGCGTACAGCA---------
droBia1 scf7180000302402:6670226-6670533 - TGCG--AGCGGATCCTC----------CGGCAGC---GGCACCACCCACACGTCGACGCCCAAGCAGCGCGAAGGTACCACCAGCACCACTAATT---------------------CC---AGCTCCA------ACTCCACCAGCAGCAGTCAGCAG-------------------------------CAGCAACAGCAGCAGC------AGCAAC-------------AACAGCA---------------------------GCAGCAG-----------CA---GAGCAACAGCAACAGCAACACCAC---------------CGCCAGCAGCAACACATCCGCCTCGTCATCCGCCGCAGCAGC------------------CTCCCTGTCCGCCGCCGCAGCCGCCGCCTCCGCAGC---TACATCCTCGAACGGACTGTTCGACGGCACGGCGCAGGCGTACAGCAGCGGCGGCG
droTak1 scf7180000415711:1716479-1716780 - TGCG--AGCGGATCCTC----------CGGCAGC---GGCACCACCCACACGTCGACGCCCAAGCAGCGCGAAGGTACTACCAGCACCACTAATT---------------------CC---AGCTCCA------ACTCC---AGCAGCAGTCAGCAG-------------------------------CAGCAGCAACAGCAGCAG---CAGCAAC-------------AACA---------------------GCAG--CAG-CAGCAA-----------CA---GAGCAGCAGCAACAGCAACACCAC---------------CGCCAGCAGCAACACCTCCGCCTCGTCCTCCGCCGCAGCAGC------------------TTCTCTTTCAGCCGCTGCTGCCGCCGCCTCCGCAGC---CACCTCCTCGAACGGACTGTTCGACGGAACGGCGCAGGCGTACAGCA---------
droEug1 scf7180000409490:745806-746128 + TGCG--AGTGGATCCTC----------CGGCAGC---GGCACCACCCACACATCGACGCCCAAGCAGCGAGAAGGTACAACCAGCACCACTAATT---------------------CC---AGCTCCA------ACTCC---AGCAGTAGTCAACAG-------------------------------CAGCAGCAGCAGCAGCAG---CA---AC-------------AACAACAGCAGCAGCAGCAACA------------GCAGCAG--------CAGCAACATAACAGCAGCAATAGCAACACCAA---------------TGCCAGCAGCAACACATCCGCCTCGTCCTCCGCCGCAGCAGC------------------TTCTTTGTCCGCCGCCGCAGCAGCCGCCTCCGCAGC---CACATCCTCGAACGGTCTGTTCGATGGAACGGCGCAGGCGTACAGCAGCGGT---G
dm3 chr3R:3992856-3993151 - TGCG--AGCGGATCCTC----------CGGCAGC---GGCACCACCCACACGTCGACGCCCAAGCAGCGCGAAGGTACAGCCAGCACCACTAATT---------------------CC---AGCTCCA------ACTCT---AGCAGCAGTCAGCAG-------------------------------CAGCAACAACAGC---------A---GC-------------AACAGCAGCAGCAGCA------------------GCAACAG-----------CA---AAGTAG------CAGCAACACCAC---------------CGCCAGCAGCAACACATCCGCCTCGTCCTCCGCCGCAGCAGC------------------TTCCCTGTCTGCCGCCGTAG---CCGCCTCGGCAGC---CACATCCTCGAACGGACTGTTCGACGGAACGGCGCAGGCGTACAGCAGCGGG---G
droSim2 3l:13691939-13692186 - CGAA--CACAAAA----------------GCAGC---A-----GG--------------CCACGCAGCA-----------------GCAACAAAT---CCAGCAGCAGCAGCAATTGC---AGCACCA------ACAAC---AGATGCAA-CAACAG-------------------------------CAGCAGC---------------A----------------------------------ACAACAACAGCAGCA---GCAGCAG-----------C-----AACAACAGCAGCAGCAACAACAACAACAGCAGATCATCCAACAACA--------------------------------GG--CAACGGCTACT---TCTGCCCTATCTGACAT-----CCTTGGCTTTGGCGAG---GACAGCGT------GGCTG-CCAAGAGCAT--CGCTAGC--ATTAAGT----CCCA
droSec2 scaffold_0:17835397-17835704 + TGCG--AGCGGATCCTC----------CGGCAGC---GGCACCACCCACACGTCGACGCCTAAGCAGCGCGAAGGTACAGCCAGCACCACTAATT---------------------CC---AGCTCCA------ACTCT---AGCAGCAGTCAGCAG-------------------------------CAGCAGCAGCAACAACAG---CA---GC-------------AACAGCAGCAGCAGCAGCAACA------------GCAGCAG-----------CA---AAGTAG------CAGCAACACCAC---------------CGCCAGCAGCAACACATCCGCCTCGTCCTCCGCCGCAGCAGC------------------TTCCCTGTCCGCCGCCGTAG---CCGCCTCCGCAGC---CACATCCTCGAACGGACTGTTCGACGGAACGGCGCAGGCGTACAGCAGCGGG---G
droYak3 3R:8065821-8066126 - TGCG--AGCGGATCCTC----------CGGCAGC---GGCACCACCCACACGTCGACGCCCAAGCAGCGCGAAGGTACAGCCAGCACCACTAATT---------------------CC---AGCTCCA------ACTCT---AGCAGCAGTCAGCAC-------------------------------CAGCAGCAGCAACAACAG---CA---GC-------------AACAGCAGCAGCAGCAGCAACA------------GCAGCAG-----------CA---GAGT------AACAGCAACACCAC---------------CGCCAGCAGCAACACATCCGCCTCGTCCTCCGCCGCAGCAGC------------------ATCCCTGTCCGCCGCCGTAG---CCGCCTCCGCAGC---CACATCCTCGAACGGATTGTTCGACGGCACGGCGCAGGCGTACAGCAGCG-----G
droEre2 scaffold_4770:17587534-17587841 + der_665 TGCG--AGCGGATCCTC----------CGGCAGC---GGCACCACCCACACGTCGACGCCCAAGCAGCGCGAAGGTACAGCCAGCTCCACTAATT---------------------CC---AGCTCCA------ACTCT---AGCAGCAGTCAGCAG-------------------------------CAGCAGCAGCAGCAGCAA---CA---GC-------------AGCAACAGCAGCAGCAACAGCA------------GCAGCAG-----------CA---GAGTAG------CAGCAACACCAC---------------CGCCAGCAGCAACACATCCGCCTCGTCCGCCGCCGCAGCAGC------------------ATCCCTGTCCGCCGCCGTAG---CCGCCTCCGCAGC---CACATCCTCGAACGGATTGTTCGACGGAACGGCGCAGGCGTACAGCAGCGGG---G

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
TGCC--AGCTCG-------------------AGC---GGACCCGCCCCCACATCAGCGCCCAAGCAGCGCGAAGGTACTAACAGCAATAACAAT---------------------------AGCTCCA------ACTCC---AGCAGCAGCCAGCAG-------------------------------CAGCAGCAGCAGC----------------------------AACA---------------------GCAG--CAG-CAGCAG-----------CA---GGGCGGCAGCAGCA---A---TCC---------------CAACAACAGCAATGCCTCCTCCTCCGCCTCCG------------------------------------------------CCTCAGCCTCCGCGGC---CACCTCCTCGAACGGGCTGTTCGACGGCACCGCGCAGGCGCACTACGCGGCCTCCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................................................................................................................................................................................................................................A---------------------GCAG--CAG-CAGCAG-----------CA---GGGCG.............................................................................................................................................................................................2131.3340000101020
...............................................................................AACAGCAATAACAAT---------------------------AGCTCCA------ACTCC---..................................................................................................................................................................................................................................................................................................................................................2711.0010010000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGCTGTTCGACGGCACCGCGCAG...................2511.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAACGGGCTGTTCGACGGCACC.........................2311.0010000000001
.....................................................................................AATAACAAT---------------------------AGCTCCA------ACTCC---AGCAGC............................................................................................................................................................................................................................................................................................................................................2711.0010010000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................GGC---CACCTCCTCGAACGGGCTGTT...................................2411.0010100000000
.........................................................................GGTACTAACAGCAATAACAAT---------------------------AGCTCC.................................................................................................................................................................................................................................................................................................................................................................2711.0010010000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGCTGTTCGACGGCACCGC.......................2111.0010010000000
....................................................................................................................................................................................................GCAGC----------------------------AACA---------------------GCAG--CAG-CAGCAG-----------CA---GGG...............................................................................................................................................................................................2720.5010100000000
......................................................................................................................................................................................................AGC----------------------------AACA---------------------GCAG--CAG-CAGCAG-----------CA---GGGC..............................................................................................................................................................................................2620.5010000100000
...............................................................................................................................................................................................CAGCAGCAGC----------------------------AACA---------------------GCAG--CAG-CA......................................................................................................................................................................................................................23200.1530200100000
.......................................................................................................................................................................................................GC----------------------------AACA---------------------GCAG--CAG-CAGCAG-----------.......................................................................................................................................................................................................19200.1020200000000
....................................................................................................................................................................................................GCAGC----------------------------AACA---------------------GCAG--CAG-CAGCAG-----------CA---GG................................................................................................................................................................................................26140.0710100000000
........................................................................................................................................................................................................C----------------------------AACA---------------------GCAG--CAG-CAGCAG-----------C......................................................................................................................................................................................................19200.0510000100000
..............................................................................................................................................................................................GCAGCAGCAGC----------------------------AACA---------------------GCAG--CA..........................................................................................................................................................................................................................21200.0510000000001
.....................................................................................................................................................GCCAGCAG-------------------------------CAGCAGCAGCAGC----------------------------...........................................................................................................................................................................................................................................................21200.0510100000000
.....................................................................................................................................................GCCAGCAG-------------------------------CAGCAGCAGCA.........................................................................................................................................................................................................................................................................................19200.0510100000000
..................................................................................................................................................................................................CAGCAGC----------------------------AACA---------------------GCAG--CAG-CAG.....................................................................................................................................................................................................................21200.0510100000000
droPer2
TGCC--AGCTCG-------------------AGC---GGACCCGCCCCCACATCAGCGCCCAAGCAGCGCGAAGGTACTAACAGCAATAACAAT---------------------------AGCTCCA------ACTCC---AGCAGCAGCCAGCAG-------------------------------CAGCAGCAGCAA-------------------------------CA---------------------GCAG--CAG-CAGCAG-----------CA---GGGCGGCAGCAGCA---A---TCC---------------GAACAACAGCAATGCCTCCTCCT------CCGCC---------------------------------TCCGCCTCCG---CCTCAGCCTCCGCGGC---CACCTCCTCGAACGGGCTGTTCGACGGCACCGCGCAGGCGCACTACGCGGCCTCCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGCTGTTCGACGGCACCGCG......................2213.003300000
........................................................................................................................................................................................................................................................................................................................................................................................................................................CACCTCCTCGAACGGGCC......................................1811.001100000
.GCC--AGCTCG-------------------AGC---GGACCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................GGC---CACCTCCTCGAACGGGC.......................................2011.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGGCTGTTCGACGGCACC.........................2011.001100000
.......................................................................................................................................................................................................................................CA---------------------GCAG--CAG-CAGCAG-----------CA---GGGC..............................................................................................................................................................................................21110.091100000
droWil2
AGGCAGCTCAACATCTTCGGCCCACACATCCAGC---GGACCCAATCAAACATCAACGCCAAAGCAGCGCGAAGGTACGACAAACCAGAATAATC---------------------CT---AGTTCCA------ACAAC---A-CAGCCACCAGCAA-------------------------------CAGCAACAGCAAC---AACAACA---ACACTGCCAGCCACCAACAGCAGCAACAACAGCAACA------------GCAGCAG-------------------CAGCAGCAACAAC----CAAA---------------CACAAATAGCAATGCCTCCT------CCGCCTCCGCATCCA---------------------------------------CCTCCGGCTCAGCATC---GGCCACCTCGAATGGCCTGTTCGATGGCACGGCTCAGGCCCACTATGCGGCG---ASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........................................................................................................................AGTTCCA------ACAAC---A-CAGCCACCAGCAA-------------------------------CA..................................................................................................................................................................................................................................................................................................2811.00100010
..................................................CATCAACGCCAAAGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
..GCAGCTCAACATCTTCGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGATGGCACGGCTCAG...................1911.00100010
.........AACATCTTCGGCCCACACATCCAGC---...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010
............................................................................................................................................................................................................................................................................................................................................................................CA---------------------------------------CCTCCGGCTCAGCATC---GGCCACCTCG..............................................2811.00100010
.............................................................................................................................................................................................................................................................................................................................................................................A---------------------------------------CCTCCGGCTCAGCATC---GGC.....................................................2011.00100010
.........................................................................................................................................................................................................................................................................................................................................................................ATCCA---------------------------------------CCTCCGGCTCAGC..............................................................1811.00100010
......................................................................................................................................................................................................................................ACAGCAGCAACAACAGCAACA------------GC.......................................................................................................................................................................................................................2370.14100010
......................................................................................................................................................................................................................................................CAACA------------GCAGCAG-------------------CAGCAGCAACA....................................................................................................................................................................................23200.05100001
...........................................................................................................................................................AA-------------------------------CAGCAACAGCAAC---AACAAC..............................................................................................................................................................................................................................................................................21200.05100010
...............................................................................................................................................................................................................................................ACAACAGCAACA------------GCAGCAG-------------------CAGC...........................................................................................................................................................................................23200.05100010
............................................................................................................................................................................................................................................GCAACAACAGCAACA------------GCAGCAG-------------------C..............................................................................................................................................................................................23200.05100100
.............................................................................................................................................................................................................................................CAACAACAGCAACA------------GCAGCAG-------------------CAG............................................................................................................................................................................................24200.05101000
..............................................................................................................................................................................................................................................AACAACAGCAACA------------GCAGCAG-------------------C..............................................................................................................................................................................................21200.05100010
droVir3
CGCA--G-CTGCAGCGC------ATGCGGCCAGCGCTGGACCGGCGCAATCGTCTGCGCCCAAGCAGCGCGAAGGTAGTACTAACAACAACAACA------ATAATA---------CAAATAGCTCAA------ATAGC---AGCAGCAAC-GGCAGCAGCGCCGGCAACCAAGCG---CCGCAGCAGCAGCAGC---------------A-------------------------GCAACAGCA---------GCAGCA---GCAGCAG-----------CA---AAGC------------------------------------AACAACAGCAATGCCTCCTCAT---CC---------------------------------------------------------GCCTCCG---C---CTCAACGTCGAACGGCCTATTCGATGGCACCGCCCAGGCCCACTATGCGGCC---ASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....................................................................................CAACAACAACA------ATAATA---------CAAATAGCT...................................................................................................................................................................................................................................................................................................................................................................2612.002000000000000000000000000000000000000000000000000000000000002000
........................................................................................AACAACA------ATAATA---------CAAATAGCC...................................................................................................................................................................................................................................................................................................................................................................2211.001000100000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................GCAGCAAC-GGCAGCAGCGCCG...........................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000001000
.......................................................................................................................................................................AACCAAGCG---CCGCAGCAGCAGCA...............................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGGCCTATTCGATGGCACC.........................2211.001000100000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................CG---CCGCAGCAGCAGCAGC---------------A-------------------------GCAACA..............................................................................................................................................................................................................................................2580.131001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................GCAGCAGC---------------A-------------------------GCAACAGCA---------GCA...............................................................................................................................................................................................................................21200.102000000000000000000000000000020000000000000000000000000000000000
................................................................................................................................................................................................AGC---------------A-------------------------GCAACAGCA---------GCAGCA---GCA......................................................................................................................................................................................................................22200.051001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................AACAGCA---------GCAGCA---GCAGCAG-----------C......................................................................................................................................................................................................21200.051000000000000000000000000000010000000000000000000000000000000000
...............................................................................................................................................................................G---CCGCAGCAGCAGCAGC---------------A-------------------------GCAAC...............................................................................................................................................................................................................................................23200.051001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................AACAGCA---------GCAGCA---GCAGCAG-----------CA---..................................................................................................................................................................................................22200.051000000000000000000000000000000000000000000000000000000000001000
......................................................................................................................................................................................CAGCAGCAGCAGC---------------A-------------------------GCAACA..............................................................................................................................................................................................................................................20200.051000000000000000000000000000000000000100000000000000000000000000
...............................................................................................................................................................................................................................................ACAGCA---------GCAGCA---GCAGCAG-----------C......................................................................................................................................................................................................20200.051000000000000000000000000000000000000100000000000000000000000000
droMoj3
CCCG--ACCGCGGCGCA-------CGCGGGCAGCGCCGGACCGGCCCAATCCTCGGCGCCCAAGCAGCGTGAAGGTACGAACAATACGAATAGCT---------------------C---------AA------ATAGC---AGCAGCAGC-------AGC---GGCAGTCAAGCGACGTCGCAG---CAGCAGCAGCAGCAGCAG---CA---GC-------------AACAGCAGCAGCAGCAACAGCA------------GCAGCAG--------CAGCA---AAA------------------------------------TAGCAACAGCAATGCCTCCTCCTCAACC------GCCTCCG---------------------------------------CCTCAGTGTCCGCATC---G---ACGTCGAACGGCCTGTTCGATGGCACCGCCCAGGCGCACTATGCGGCC---ASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
......................................................................................................................................................................................................................................................................................................................................AGCAACAGCAATGCCTCCTCC.....................................................................................................................................2111.001000010
......................................................................................................................................................................................................................GC-------------AACAGCAGCAGCAGCAA..........................................................................................................................................................................................................................................19200.051010000
........................................................................................................................................................................................................CAGCAG---CA---GC-------------AACAGCAGCAGCAGCA...........................................................................................................................................................................................................................................26200.051100000
....................................................................................................................................................................................CGCAG---CAGCAGCAGCAGCAGCAG---C..............................................................................................................................................................................................................................................................................24200.051100000
droGri2
TGCC------------------------GGCAGCGCTGGACCCGCCCAATCCTCGGCGCCCAAGCAGCGCGAAGGTAGTACTAACAACAACAACAACACCAACAATA---------CAAATAGCTCAA------ATAGC---AGCAGTAGC-------AGC---GCCAATCAAGCG---CCGCAGCAGCAGCAGC---------------AGCAAC-------------AACA---------------------GCAGCA---GCAACAG-----------CA---GAATAGCAACAACAACAAC---AA---------------CAACAACAGCAATGCCTCCTCAT---CC---------------------------------------------------------GCATCCGCATC---G---ACATCGAATGGACTATTCGATGGGACCGCCCAGGCGCACTATGCGGCG---ASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
............................................................................................................................................................................................CAGCAGC---------------AGCAAC-------------AACA---------------------GCAGCA---.........................................................................................................................................................................................................................23200.10220
..................................................................................................................................................................................................................AGCAAC-------------AACA---------------------GCAGCA---GCAACAG-----------C......................................................................................................................................................................................................24200.10220
..................................................................................................................................................................................................................AGCAAC-------------AACA---------------------GCAGCA---GCAACA...................................................................................................................................................................................................................22200.05110
.................................................................................................................................................................................................GC---------------AGCAAC-------------AACA---------------------GCAGCA---GCAACA...................................................................................................................................................................................................................24200.05110
........................................................................................................................................................................................GCAGCAGCAGC---------------AGCAAC-------------AACA---------------------GCA...............................................................................................................................................................................................................................24200.05110
..................................................................................................................................................................................................................AGCAAC-------------AACA---------------------GCAGCA---GCAAC....................................................................................................................................................................................................................21200.05110
droAna3
TGCC--AGCGGCTCCTC----------CGGCACC---GGACCCACCCAGTCCTCGGCGCCGAAACAACGCGAAGGTACTAGC------TCTAATC---------------------CC---AGCTCCAACTCCAACTCC---ACCAGCAGCCAACAG-------------------------------CAGCAGCAGCAACAGC----------------------------A---------------------GCAG--CAG-CAGCAACAGAGCAGCGG-----GAGCAGCAGCAACAGCAACAACAC---------------CACCAGCAGCAACAACTCCGCCTCGTCCGCCGCAGCAGCAGC------------------CGCT---GCCGC---CGCCGCCGCCGCATCCGCGAA---TACGTCCTCCAATGGACTGTTCGATGGGACGGCGCAGGCCCACTATGCCTCC---ASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................................................................................................................................................................................................................................................AACAGAGCAGCGG-----GAGCAGCAGC........................................................................................................................................................................................2311.001010000
......................................................................................................................................................................................................................................................................G-CAGCAACAGAGCAGCGG-----GAGCAGC...........................................................................................................................................................................................2511.001010000
.................................................................................................................................................................................................................................................................G--CAG-CAGCAACAGAGCAGCGG-----GA................................................................................................................................................................................................2311.001010000
..................................................................................................................................................................................................................................................................................................................................................AACTCCGCCTCGTCCGCCGCAGCA......................................................................................................................2411.001010000
..............................................................................................................................................................................................................................................................................................................................................CAACAACTCCGCCTCGTCCGC.............................................................................................................................2111.001001000
................................................................................................................................................................................................................................................................................................................................................ACAACTCCGCCTCGTCCGCC............................................................................................................................2011.001010000
....................................................................................................................................................................................................................................................................................AGCGG-----GAGCAGCAGCAACAGC..................................................................................................................................................................................2111.001010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGACGGCGCAGGCCCACTATGCCTC.....2811.001010000
.............................................................................................................................................................................................................................................................................................................................................GCAACAACTCCGCCTCGTCCGCC............................................................................................................................2311.001010000
..................................................................................................................................................................................................................................................................................................AGCAGCAACAGCAACAACAC---------------CACCAGC....................................................................................................................................................2711.001010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGACGGCGCAGGCCCACTATGCCTC.....2911.001010000
...............................................................................................................................................................................................................................................................................................AGCAGCAGCAACAGCAACAACAC---------------CACC.......................................................................................................................................................2711.001010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGACGGCGCAGGCCCACTATGCC.......2711.001010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGACGGCGCAGGCCCACT............2211.001010000
......................................................................................................................................................................................................................................................................G-CAGCAACAGAGCAGCGG-----GA................................................................................................................................................................................................2011.001010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGGACTGTTCGATGGGA...........................2011.001000010
...............................................................................................................................................................................................................................................................................................................................................AACAACTCCGCCTCGTCCGCC............................................................................................................................2111.001010000
...........................................................CGAAACAACGCGAAGGTACT.................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
...................................................................CGCGAAGGTACTAGC------TCTA....................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
.........................................................................GGTACTAGC------TCTAATC---------------------CC---.......................................................................................................................................................................................................................................................................................................................................................................1811.001010000
.........................................................GCCGAAACAACGCGAAGGTACTAGC------TCT.....................................................................................................................................................................................................................................................................................................................................................................................................2811.001010000
.....................................................................................................................................................................................................CAACAGC----------------------------A---------------------GCAG--CAG-CAGCA...................................................................................................................................................................................................................20200.102000002
........................................................................................................................................................AACAG-------------------------------CAGCAGCAGCAACAGC----------------------------A---------------------GCAG--............................................................................................................................................................................................................................26150.071010000
.........................................................................................................................................................ACAG-------------------------------CAGCAGCAGCAACAGC----------------------------A---------------------GCAG--............................................................................................................................................................................................................................25180.061010000
........................................................................................................................................................AACAG-------------------------------CAGCAGCAGCAACAGC----------------------------A---------------------GC................................................................................................................................................................................................................................24200.051010000
......................................................................................................................................................................................................AACAGC----------------------------A---------------------GCAG--CAG-CAGCAA..................................................................................................................................................................................................................20200.051010000
........................................................................................................................................................AACAG-------------------------------CAGCAGCAGCAACAGC----------------------------A---------------------GCA...............................................................................................................................................................................................................................25200.051001000
................................................................................................................................................................................................AGCAGCAACAGC----------------------------A---------------------GCAG--CAG-CAGCA...................................................................................................................................................................................................................25200.051000001
.................................................................................................................................................................................................GCAGCAACAGC----------------------------A---------------------GCAG--CAG-CAGCA...................................................................................................................................................................................................................24200.051010000
droBip1
TGCC--AGCGGCTCCTC----------CGGCAGC---GGGCCCACCCAGTCCTCGGCGCCGAAACAACGCGAAGGTACTAGC------TCTAATC---CCAGCT------------CC---AGCTCCA------ACTCC---ACCAGCAGCCAACAG-------------------------------CAGCAGCAGCAGC----------------------------AACA---------------------GCAG--CAG-CAGCAACAGAGTAGCGG-----GAGCAGCAGCAACAGCAACACCA------------------CCAGCAGCAACAACTCCGCCTCCTCCGCC---GCAGCAG---------------------------------CCGTAGCCGCCGCGTCCGCGAA---TACCTCCTCCAATGGACTGTTCGATGGGACGGCGCAGGCCCACTATGCCTCC---ASizeHit CountTotal NormTotal
No Reads
droKik1
CGCG--AACGGCTCCTC----------CGGCAGC---GGACCCAGCCAGAGTTCGGCGCCCAAGCAGCGCGAAGGTACTACC------ACTAATC---------------------CC---AGCTCCA------ACTCC---AGTAGCAGCCAGCAG-------------------------------CAGCAGCAACAGTCGCAG---CA---GC-------------AATCGCAGCAACAGCA------------------GCAGCAG-----------CA---GGGCAGCAGCAACAGTAACAACAA---------------CGCCAGCAGTAACTCCTCCGCCTCATCCGCCGCCGCAGCAGCAGCAGCAGCTGCCGCCGCCTCCCTGTCCGCCTCTGCAG---CCG---CCGCAGC---CACGTCCTCGAACGGTTTGTTTGAGGGCACGGCCCAGGCGCACTATGCCTCCCAGASizeHit CountTotal NormTotal
No Reads
droFic1
TGCG--AGCGGATCCTC----------GAGCGGC---GGCGCCACCCACACGTCGGCGCCCAAGCAGCGCGAAGGTACGAGCAGCACCACTAATT---------------------CC---AGCTCCA------ACTCCACCAGCAGCAGTCAGCAG-------------------------------CAGCAGCAACAGCAGCAG---CA---GC-------------A------GCAACA---------------------GCAGCAG-----------CA---GAGCAGCAGCAGCAGCAACAACAC---------------CGCCAGCAGCAACACCTCCGCCTCCGCATCCGC---AG---------------------------------------------CAGCCTCCGCGTC---CACATCCTCCAACGGACTGTTCGAGGGCACCGCGCAGGCGTACAGCAGTGGTGCGASizeHit CountTotal NormTotal
No Reads
droEle1
TGCG--AGCGGATCCTC----------CGGCAGC---GGCGCCACCCACACGTCGGCGCCCAAGCAGCGCGAAGGTACTACCAGCACCACTAATT---------------------CC---AGCTCCA------ACTCCACCAGCAGCAGTCAGCAG-------------------------------CAGCAGCAACAGC-------------------------------A---------------------GCAGCA---GCAGCAG-----------CA---GAGTAACAGCAACAGCAACACCAA---------------CGCCAGCAGCAACACATCCGCCTCGTCCGCCGCAGCAGCAGC------------------TTCTTTGTCCGCCGCCGCTGCAGCCGCCTCCGCAGCGAGTCAATCCTCGAACGGATTGTTCGACGGCACGGCGCAGGCGT---------------SizeHit CountTotal NormTotal
No Reads
droRho1
TGCG--AGCGGATCCTC----------CGGCAGC---GGCACCACCCACACGTCGGCGCCCAAGCAGCGCGAAGGTACTACCAGCACCACTAATT---------------------CC---AGCTCCA------ACTCC---AGCAGCAGTCAGCAG-------------------------------CAGCAGCAACAGC---------A---GC-------------AACA---------------------GCAG--CAG-CAGCAA-----------CA---GAGCAGCAGCAACAGCAACACCAC---------------CGCCAGCAGCAACACCTCCGCCTCGTCCGCCGCAGCAGCAGC------------------ATCCCTGTCCGCCGCCGCTGCCGCCGCCTCCGCAGC---CACATCCTCGAACGGACTGTTCGACGGAACGGCGCAGGCGTACAGCA---------SizeHit CountTotal NormTotal
No Reads
droBia1
TGCG--AGCGGATCCTC----------CGGCAGC---GGCACCACCCACACGTCGACGCCCAAGCAGCGCGAAGGTACCACCAGCACCACTAATT---------------------CC---AGCTCCA------ACTCCACCAGCAGCAGTCAGCAG-------------------------------CAGCAACAGCAGCAGC------AGCAAC-------------AACAGCA---------------------------GCAGCAG-----------CA---GAGCAACAGCAACAGCAACACCAC---------------CGCCAGCAGCAACACATCCGCCTCGTCATCCGCCGCAGCAGC------------------CTCCCTGTCCGCCGCCGCAGCCGCCGCCTCCGCAGC---TACATCCTCGAACGGACTGTTCGACGGCACGGCGCAGGCGTACAGCAGCGGCGGCGSizeHit CountTotal NormTotal
No Reads
droTak1
TGCG--AGCGGATCCTC----------CGGCAGC---GGCACCACCCACACGTCGACGCCCAAGCAGCGCGAAGGTACTACCAGCACCACTAATT---------------------CC---AGCTCCA------ACTCC---AGCAGCAGTCAGCAG-------------------------------CAGCAGCAACAGCAGCAG---CAGCAAC-------------AACA---------------------GCAG--CAG-CAGCAA-----------CA---GAGCAGCAGCAACAGCAACACCAC---------------CGCCAGCAGCAACACCTCCGCCTCGTCCTCCGCCGCAGCAGC------------------TTCTCTTTCAGCCGCTGCTGCCGCCGCCTCCGCAGC---CACCTCCTCGAACGGACTGTTCGACGGAACGGCGCAGGCGTACAGCA---------SizeHit CountTotal NormTotal
No Reads
droEug1
TGCG--AGTGGATCCTC----------CGGCAGC---GGCACCACCCACACATCGACGCCCAAGCAGCGAGAAGGTACAACCAGCACCACTAATT---------------------CC---AGCTCCA------ACTCC---AGCAGTAGTCAACAG-------------------------------CAGCAGCAGCAGCAGCAG---CA---AC-------------AACAACAGCAGCAGCAGCAACA------------GCAGCAG--------CAGCAACATAACAGCAGCAATAGCAACACCAA---------------TGCCAGCAGCAACACATCCGCCTCGTCCTCCGCCGCAGCAGC------------------TTCTTTGTCCGCCGCCGCAGCAGCCGCCTCCGCAGC---CACATCCTCGAACGGTCTGTTCGATGGAACGGCGCAGGCGTACAGCAGCGGT---GSizeHit CountTotal NormTotal
No Reads
dm3
TGCG--AGCGGATCCTC----------CGGCAGC---GGCACCACCCACACGTCGACGCCCAAGCAGCGCGAAGGTACAGCCAGCACCACTAATT---------------------CC---AGCTCCA------ACTCT---AGCAGCAGTCAGCAG-------------------------------CAGCAACAACAGC---------A---GC-------------AACAGCAGCAGCAGCA------------------GCAACAG-----------CA---AAGTAG------CAGCAACACCAC---------------CGCCAGCAGCAACACATCCGCCTCGTCCTCCGCCGCAGCAGC------------------TTCCCTGTCTGCCGCCGTAG---CCGCCTCGGCAGC---CACATCCTCGAACGGACTGTTCGACGGAACGGCGCAGGCGTACAGCAGCGGG---GSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACGGAACGGCGCAGGC.................1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................ATCCGCCTCGTCCTCCGCCGC.......................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................CATCCTCGAACGGACTGTTCG.................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGACTGTTCGACGGAA...........................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................CA---AAGTAG------CAGCAACACCAC---------------C..........................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000
.............................................................AAGCAGCGCGAAGGTACAGCC..............................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000
.............CCTC----------CGGCAGC---GGCACCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............CTC----------CGGCAGC---GGCACCACCCACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000
............................................................CAAGCAGCGCGAAGGTACAG................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................ACATCCGCCTCGTCCTCC............................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................GCAACACATCCGCCTCGTCCTC.............................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................CAGCACCACTAATT---------------------CC---AGC....................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................CGACGCCCAAGCAGCGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...........................................................CCAAGCAGCGCGAAGGTA...................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
................................................................CAGCGCGAAGGTACAGCCAGC...........................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGACGGAACGGCGCAGGC.................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................TTCCCTGTCTGCCGCCGT.............................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................CAGCAGTCAGCAG-------------------------------CAGCAACA............................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
..........................................................CCCAAGCAGCGCGAAGGTACA.................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.................................................................AGCGCGAAGGTACAGCCAGC...........................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................AG------CAGCAACACCAC---------------CGCCAGC....................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........GATCCTC----------CGGCAGC---GGCACCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................A---AAGTAG------CAGCAACACCA...........................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................G------CAGCAACACCAC---------------CGCCA......................................................................................................................................................1830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................C-------------AACAGCAGCAGCAGCA------------------GC.......................................................................................................................................................................................................................19200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006
.......................................................................................................................................................CAGCAG-------------------------------CAGCAACAACAGC---------A---GC-------------...........................................................................................................................................................................................................................................................22200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000001000
..................................................................................................................................................................................................................A---GC-------------AACAGCAGCAGCAGCA------------------GC.......................................................................................................................................................................................................................21200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000
......................................................................................................................................................................................................................................ACAGCAGCAGCAGCA------------------GCAACA...................................................................................................................................................................................................................21200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................AGCAGCA------------------GCAACAG-----------CA---AAG...............................................................................................................................................................................................1960.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................CAACAGC---------A---GC-------------AACAGCAGCAGCAGCA------------------G........................................................................................................................................................................................................................27130.1520000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................AACAACAGC---------A---GC-------------AACAGCAGCAGCA..............................................................................................................................................................................................................................................25200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................AGCAACAACAGC---------A---GC-------------AACAG......................................................................................................................................................................................................................................................20200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
.........................................................................................................................................................GCAG-------------------------------CAGCAACAACAGC---------A---G.........................................................................................................................................................................................................................................................................19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
........................................................................................................................................................................................................C---------A---GC-------------AACAGCAGCAGCAGCA------------------G........................................................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................CAACAGC---------A---GC-------------AACAGCAGCAGCAGCA------------------GC.......................................................................................................................................................................................................................28120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................AGCAG-------------------------------CAGCAACAACAGC---------A---GC-------------AACAGC.....................................................................................................................................................................................................................................................27130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........................................................................................................................................................GCAG-------------------------------CAGCAACAACAGC---------A---GC-------------AACAGC.....................................................................................................................................................................................................................................................26140.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................................................................................................................CAGCAGCA------------------GCAACAG-----------CA---AA................................................................................................................................................................................................19170.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................CAG-------------------------------CAGCAACAACAGC---------A---GC-------------AA.........................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................ACAGCAGCAGCAGCA------------------GCAAC....................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
............................................................................................................................................................G-------------------------------CAGCAACAACAGC---------A---GC-------------AA.........................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................CAGCAACAACAGC---------A---GC-------------AACAG......................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
........................................................................................................................................................................................................................................AGCAGCAGCAGCA------------------GCAACAG-----------CA---..................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................GC---------A---GC-------------AACAGCAGCAGCAGCA------------------.........................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................CAGCAG-------------------------------CAGCAACAACAGC---------A---GC-------------AA.........................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................AACAACAGC---------A---GC-------------AACAGCAGC..................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
...................................................................................................................................................................................................AACAGC---------A---GC-------------AACAGCAGCAGC...............................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...................................................................................................................................................................................................AACAGC---------A---GC-------------AACAGCAGCAGCA..............................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................CAACAGC---------A---GC-------------AACAGCAGCAG................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................AGCAGCAGCA------------------GCAACAG-----------C......................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................ACAACAGC---------A---GC-------------AACAGCAGCAGC...............................................................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................C---------A---GC-------------AACAGCAGCAGCAGCA------------------GC.......................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000
droSim2
CGAA--CACAAAA----------------GCAGC---A-----GG--------------CCACGCAGCA-----------------GCAACAAAT---CCAGCAGCAGCAGCAATTGC---AGCACCA------ACAAC---AGATGCAA-CAACAG-------------------------------CAGCAGC---------------A----------------------------------ACAACAACAGCAGCA---GCAGCAG-----------C-----AACAACAGCAGCAGCAACAACAACAACAGCAGATCATCCAACAACA--------------------------------GG--CAACGGCTACT---TCTGCCCTATCTGACAT-----CCTTGGCTTTGGCGAG---GACAGCGT------GGCTG-CCAAGAGCAT--CGCTAGC--ATTAAGT----CCCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................................................................................................................GCACCA------ACAAC---AGATGCAC-.........................................................................................................................................................................................................................................................................................................................................1911.00100000000001000000
....................................................................................................................................................................................................................................................................................................................................................................................................CCTATCTGACAT-----CCTTGGCTTTGGCGA............................................................2711.00101000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................TCTGACAT-----CCTTGGCTTTGGC..............................................................2111.00110000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................T------GGCTG-CCAAGAGCAT--CGCTAGC--AT.............2511.00100000000001000000
.............................................................................................................................................................................................................................................................................................................CAACAACAACAACAGCAGA................................................................................................................................................................1960.17100000001000000000
........................................................................................................................................................................................................................................................................................................AGCAGCAACAACAACAACAGC...................................................................................................................................................................21200.15300000000003000000
..............................................................................................................................................................................................GCAGC---------------A----------------------------------ACAACAACAGCAG..............................................................................................................................................................................................................................19200.05100000000000100000
..................................................................................................................................................................................................................A----------------------------------ACAACAACAGCAGCA---GC.......................................................................................................................................................................................................................18200.05100000000001000000
..............................................................................................................................................................................................GCAGC---------------A----------------------------------ACAACAACAGCAGCA---.........................................................................................................................................................................................................................21200.05100000000001000000
droSec2
TGCG--AGCGGATCCTC----------CGGCAGC---GGCACCACCCACACGTCGACGCCTAAGCAGCGCGAAGGTACAGCCAGCACCACTAATT---------------------CC---AGCTCCA------ACTCT---AGCAGCAGTCAGCAG-------------------------------CAGCAGCAGCAACAACAG---CA---GC-------------AACAGCAGCAGCAGCAGCAACA------------GCAGCAG-----------CA---AAGTAG------CAGCAACACCAC---------------CGCCAGCAGCAACACATCCGCCTCGTCCTCCGCCGCAGCAGC------------------TTCCCTGTCCGCCGCCGTAG---CCGCCTCCGCAGC---CACATCCTCGAACGGACTGTTCGACGGAACGGCGCAGGCGTACAGCAGCGGG---GSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........................................................................................................................................................................................................................................................................................................................................................................CAGCAGC------------------TTCCCTGTCCGCCGCCGT.............................................................................2512.0020020
.GCG--AGCGGATCCTC----------CGGCAGC---...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
......................................................................................................................................................................................................................................................CAACA------------GCAGCAG-----------CA---AAGTAG------C.....................................................................................................................................................................................2111.0010010
........................................................................................................................................................................................................................................................................................................................................................................CAGCAGC------------------TTCCCTGTCCGCCGCC...............................................................................2311.0010010
..........................................................................................................................................................................................................................................................................................................................................................CTCGTCCTCCGCCGCAGCAGC------------------...............................................................................................2111.0010010
.........................................................................................................................................................................................................................................................................AGCAG-----------CA---AAGTAG------CAGCA.................................................................................................................................................................................1811.0010010
.......................................................................................................................................................................................................................................................................................................................................................CGCCTCGTCCTCCGCCGC.......................................................................................................................1811.0010010
...............................................................................................................................................................................................................................................................................................................................................AACACATCCGCCTCGTCCTCCGCCG........................................................................................................................2511.0010010
.......GCGGATCCTC----------CGGCAGC---GG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
..........................................................................................................................................................................................................................................................................................................................................................CTCGTCCTCCGCCGCAGCAGC------------------TTC............................................................................................2411.0010010
........................................................................................................................................................................................................................................................................................................................................................................................................................................CACATCCTCGAACGGACTGTTCGACG..............................2611.0010010
...............................................................GCAGCGCGAAGGTACAGCCAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGACTGTTCGACGGAACGGCGC.....................2311.0010010
................................................................................................................................................................................................................................................CAGCAGCAACA------------GCAGCAG-----------CA---AA................................................................................................................................................................................................2260.1710010
..................................................................................................................................................................................................CAGCAACAACAG---CA---GC-------------AA.........................................................................................................................................................................................................................................................18200.1020020
..................................................................................................................................................................................................CAGCAACAACAG---CA---GC-------------AACAG......................................................................................................................................................................................................................................................21200.0510001
..................................................................................................................................................................................................CAGCAACAACAG---CA---GC-------------AACAGC.....................................................................................................................................................................................................................................................22200.0510001
.................................................................................................................................................................................................GCAGCAACAACAG---CA---GC-------------AACAGCA....................................................................................................................................................................................................................................................24200.0510010
.........................................................................................................................................................................................................AACAG---CA---GC-------------AACAGCAGCAGCA..............................................................................................................................................................................................................................................22200.0510010
.....................................................................................................................................................................................................CAACAACAG---CA---GC-------------AACAGC.....................................................................................................................................................................................................................................................19200.0510010
.............................................................................................................................................................................................................G---CA---GC-------------AACAGCAGCAGCAGCA...........................................................................................................................................................................................................................................21200.0510010
.....................................................................................................................................................................................................CAACAACAG---CA---GC-------------AACAGCA....................................................................................................................................................................................................................................................20200.0510010
..........................................................................................................................................................................................................ACAG---CA---GC-------------AACAGCAGCAGC...............................................................................................................................................................................................................................................20200.0510010
.....................................................................................................................................................................................................CAACAACAG---CA---GC-------------AACAGCAGC..................................................................................................................................................................................................................................................22200.0510010
...............................................................................................................................................................................................................................................GCAGCAGCAACA------------GCAGCAG-----------CA---..................................................................................................................................................................................................21200.0510010
.................................................................................................................................................................................................GCAGCAACAACAG---CA---GC-------------A..........................................................................................................................................................................................................................................................18200.0510010
............................................................................................................................................................................................................AG---CA---GC-------------AACAGCAGCAGCAGCAGCAACA------------.........................................................................................................................................................................................................................28200.0510010
...................................................................................................................................................................................................AGCAACAACAG---CA---GC-------------AACAGCAGCAGC...............................................................................................................................................................................................................................................27200.0510100
..................................................................................................................................................................................................CAGCAACAACAG---CA---GC-------------AACAGCAGCA.................................................................................................................................................................................................................................................26200.0510010
......................................................................................................................................................................................................AACAACAG---CA---GC-------------AACAGCAGC..................................................................................................................................................................................................................................................21200.0511000
...................................................................................................................................................................................................AGCAACAACAG---CA---GC-------------AACAGCAGCA.................................................................................................................................................................................................................................................25200.0510010
.....................................................................................................................................................................................................CAACAACAG---CA---GC-------------AACAGCAGCAGCA..............................................................................................................................................................................................................................................26200.0510010
.....................................................................................................................................................................................................CAACAACAG---CA---GC-------------AACAGCAG...................................................................................................................................................................................................................................................21200.0511000
....................................................................................................................................................................................................GCAACAACAG---CA---GC-------------AACAGCAGC..................................................................................................................................................................................................................................................23200.0510010
droYak3
TGCG--AGCGGATCCTC----------CGGCAGC---GGCACCACCCACACGTCGACGCCCAAGCAGCGCGAAGGTACAGCCAGCACCACTAATT---------------------CC---AGCTCCA------ACTCT---AGCAGCAGTCAGCAC-------------------------------CAGCAGCAGCAACAACAG---CA---GC-------------AACAGCAGCAGCAGCAGCAACA------------GCAGCAG-----------CA---GAGT------AACAGCAACACCAC---------------CGCCAGCAGCAACACATCCGCCTCGTCCTCCGCCGCAGCAGC------------------ATCCCTGTCCGCCGCCGTAG---CCGCCTCCGCAGC---CACATCCTCGAACGGATTGTTCGACGGCACGGCGCAGGCGTACAGCAGCG-----GSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGC---CACATCCTCGAACGGATTGT....................................2511.00100010000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGACGGCACGGCGCAGGC.................2111.00100100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACGGCACGGCGCAGGCGTACAGC..........2511.00100100000000
.........................................................................................CTAATT---------------------CC---AGCTCCA------ACTCT---AGC...............................................................................................................................................................................................................................................................................................................................................2311.00100100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACGGCACGGCGCAGGC.................1811.00100010000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACGGCACGGCGCAGGCGTACAGCAGC.......2811.00100100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................CCGCAGC---CACATCCTCGAACG..........................................2111.00100100000000
..........................................................................................................................................................................................................................................................................................................................................................................GCAGC------------------ATCCCTGTCCGCCGCC...............................................................................2111.00100100000000
....................................................................................................................................................................................................GCAACAACAG---CA---GC-------------AACAGCAGCAGCA..............................................................................................................................................................................................................................................27180.06101000000000
droEre2
TGCG--AGCGGATCCTC----------CGGCAGC---GGCACCACCCACACGTCGACGCCCAAGCAGCGCGAAGGTACAGCCAGCTCCACTAATT---------------------CC---AGCTCCA------ACTCT---AGCAGCAGTCAGCAG-------------------------------CAGCAGCAGCAGCAGCAA---CA---GC-------------AGCAACAGCAGCAGCAACAGCA------------GCAGCAG-----------CA---GAGTAG------CAGCAACACCAC---------------CGCCAGCAGCAACACATCCGCCTCGTCCGCCGCCGCAGCAGC------------------ATCCCTGTCCGCCGCCGTAG---CCGCCTCCGCAGC---CACATCCTCGAACGGATTGTTCGACGGAACGGCGCAGGCGTACAGCAGCGGG---GSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.......................................CACCACCCACACGTCGACGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACGGAACGGCGCAGGC.................1811.0010100000
...............................................................................GCCAGCTCCACTAATT---------------------CC---AGCTCCA------ACT.......................................................................................................................................................................................................................................................................................................................................................2811.0011000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACGGAACGGCGCAGGCGTACAGC..........2511.0010100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTGTTCGACGGAACGGCGCAGGC.................2611.0010100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................CCGCAGC---CACATCCTCGAA............................................1911.0010100000
..........................................................................GTACAGCCAGCTCCACTAATT---------------------CC---.......................................................................................................................................................................................................................................................................................................................................................................2311.0010001000
....................................................................................................................................................................................................................................................................................................................................................ATCCGCCTCGTCCGCCGCCGC.......................................................................................................................2111.0010100000
.............................................................................................................................CCA------ACTCT---AGCAGCAGTCAGC.....................................................................................................................................................................................................................................................................................................................................2111.0010100000
..........................................................................................................................................................................................................................................................A------------GCAGCAG-----------CA---GAGTAG------CAGCAACACCAC---------------C..........................................................................................................................................................2911.0010100000
................................................CACGTCGACGCCCAAGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGTTCGACGGAACGGCGCAGGC.................2511.0010001000
................................................................................................................................................................................................................................................CAGCAACAGCA------------GCAGCAG-----------CA---GA................................................................................................................................................................................................22170.0610000010
.......................................................................................................................................................................................................GCAGCAA---CA---GC-------------AGCAACAGCAGCAGC............................................................................................................................................................................................................................................26200.0510100000
......................................................................................................................................................................................................................GC-------------AGCAACAGCAGCAGCAACAGCA------------GCAGC....................................................................................................................................................................................................................29200.0510100000
.......................................................................................................................................................................................................................................CAACAGCAGCAGCAACAGCA------------GCA......................................................................................................................................................................................................................23200.0510000010
................................................................................................................................................................................................AGCAGCAGCAGCAA---CA---GC-------------AGC........................................................................................................................................................................................................................................................21200.0510001000
......................................................................................................................................................................................................AGCAGCAA---CA---GC-------------AGCAACAGCAGCAG.............................................................................................................................................................................................................................................26200.0511000000
....................................................................................................................................................................................................GCAGCAGCAA---CA---GC-------------AGCA.......................................................................................................................................................................................................................................................18200.0511000000
.......................................................................................................................................................................................................GCAGCAA---CA---GC-------------AGCAACAGCAGCA..............................................................................................................................................................................................................................................24200.0510000100
.........................................................................................................................................................................................................................................ACAGCAGCAGCAACAGCA------------GCAGCAG-----------C......................................................................................................................................................................................................26200.0511000000

Generated: 05/17/2015 at 10:38 PM