ID:

dps_510

 Coordinate:

2:12990293-12990443 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-20.9 -20.7 -20.5 -20.5

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+

Sense Strand Reads

CCTGTACAACACAGCGCTTGTCGTGCTGGAATTTTGAAGCACAGAGTTAGGTATTATTATTATTATTATTTTGTGGTGTCAATGTTAAAAACGCAGCATATATATTCATTCGGTTGTGAGCTAGATCTCGGGAAGTGGCGCAGTCACAGCGCAGTCAAGTGGCATAGTTTTGCATTGTGATATTGTGGCGAGCACGATCGCTGCCCCTACTTTCTTTCGTCGAGGACTGGACAGATACAGTTATTGCGAGA
****************************************************************************************************............(((....................((.(((((((((((.((((((....))).......))).)))))))..)))).)))))********************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902011
testis
 V112
male body		 GSM343916
embryo
 GSM444067
head
 M059
embryo
....................................................................................................TATATTCATTCGGTTGTGAGCTAGATC............................................................................................................................ 27 0 1 2.00 2 0 2 0 0 0 0
..............................................................................................................................................................................TTGTGATATTGTGGCGAGC.......................................................... 19 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................AGCATATATATTCATTCGG.......................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................................................................GGCGAGCACGATCGCTGCCC............................................. 20 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................................................................TTGTGATATTGTGGCGAG........................................................... 18 0 1 1.00 1 0 1 0 0 0 0
.................................................................................................................TTGTGAGCTAGATCTCGGGAAGTGG................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0
...............................................................................................................GGTTGTGAGCTGGATCTCG......................................................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0
................................................................ATTATTTTGTGGTGTCAATGTT..................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................................GTGAGCTAGATCTCGGGAAGT................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
....................................................................................................................................................................TAGTTTTGCATTGTGATATTG.................................................................. 21 0 1 1.00 1 0 0 1 0 0 0
........................................................................................................................CTAGATCTCGGGAAGTGGC................................................................................................................ 19 0 1 1.00 1 0 1 0 0 0 0
...............................................................................................................GGTTATGAGCTCGTTCTCGGGA...................................................................................................................... 22 3 2 0.50 1 0 0 0 1 0 0
................CGTGTCGTGCAGGAATTTT........................................................................................................................................................................................................................ 19 2 2 0.50 1 0 0 1 0 0 0
.................................................................................ATGTTAAAAATGCAGCATATGG.................................................................................................................................................... 22 3 3 0.33 1 1 0 0 0 0 0
...................................................................................GTTAAAAATGCAGCATATGGA................................................................................................................................................... 21 3 4 0.25 1 1 0 0 0 0 0
...........................................................................................................................TATCTCGGGAAGTAGCTCAG............................................................................................................ 20 3 5 0.20 1 0 0 1 0 0 0
.................................................................................................TTATATATCCACTCGGTTGT...................................................................................................................................... 20 3 8 0.13 1 0 0 0 1 0 0
.......................................................................TGTGGTGTAAATGTAAAAA................................................................................................................................................................. 19 2 11 0.09 1 0 0 0 1 0 0
................................TAAGAGGCACAGAGTTAGG........................................................................................................................................................................................................ 19 3 16 0.06 1 0 0 0 1 0 0
..................................................................................................................TGTGTGCTAGATGTCGGGT...................................................................................................................... 19 3 17 0.06 1 1 0 0 0 0 0
.........................................................................................................TCAGTCGGTAGTGAGCTGG............................................................................................................................... 19 3 18 0.06 1 0 0 0 0 1 0
...............................................................................................................GGTTGTGAGTTAGGCCTC.......................................................................................................................... 18 3 19 0.05 1 0 0 0 0 0 1
............................................................................TGGCGATGTTAAAAACGTA............................................................................................................................................................ 19 3 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

GGACATGTTGTGTCGCGAACAGCACGACCTTAAAACTTCGTGTCTCAATCCATAATAATAATAATAATAAAACACCACAGTTACAATTTTTGCGTCGTATATATAAGTAAGCCAACACTCGATCTAGAGCCCTTCACCGCGTCAGTGTCGCGTCAGTTCACCGTATCAAAACGTAACACTATAACACCGCTCGTGCTAGCGACGGGGATGAAAGAAAGCAGCTCCTGACCTGTCTATGTCAATAACGCTCT
**********************************************************............(((....................((.(((((((((((.((((((....))).......))).)))))))..)))).)))))**************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM343916
embryo
 M040
female body
 M059
embryo
........................................................................................................................................................................................................................AGCAGCTCCTGACCTGTCTAT.............. 21 0 1 1.00 1 0 1 0
..........................................................................CCACAGTTACAATTTTTGCGT............................................................................................................................................................ 21 0 1 1.00 1 0 0 1
............TCGCGAACAGCACGACCTTGG.......................................................................................................................................................................................................................... 21 2 1 1.00 1 1 0 0
.............................................CAATCCATAATAATAATA............................................................................................................................................................................................ 18 0 11 0.09 1 1 0 0
.............................................................TAATAATAAAACTCCACATG.......................................................................................................................................................................... 20 3 16 0.06 1 0 1 0
..............................................................AATAATAAAACACAACATT.......................................................................................................................................................................... 19 2 20 0.05 1 1 0 0
.................................................................................................................................................................................................................................TGACCTGTCTAAAGCAATA....... 19 3 20 0.05 1 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 2:12990243-12990493 - dps_510 CCTGTACA-------ACACA-GCGCTTGTCGTGCTGGAATT-TTGAAGCACAGAGTTAGGTATTATTATTATTATTATT-TTGTGGTGTCAA-----------TGTTAAAAACGCAGC-------------------------------------------------------ATATATATTCATTCGGTTGTGAGCTAGATCTCGGG-AAGTGGCGC-AGTCACAGCGCAGTCAAGTGGC-------------------------------------------ATAGTTTTGCA-TT--GTGAT-ATTGTGGCGAGCACGATCGCTGCC--CCTACTTTCTTTCGTCGA---GGA-CTGG-------ACAGATACAGTTATT--GC-G--AGA
droPer2 scaffold_0:7465797-7466047 + CCTGTACA-------ACACA-GCGCTTGTCGTGCTGGAATT-TTGAAGCACAGAGTTAGGTATTATTATTATTATTATT-TTGTGGTGTCAA-----------TGTTAAAAACGCAGC-------------------------------------------------------ATATATATTCAATCGGTTGTGAGCTAGATCTCGGG-AAGTGGCGC-AGTCACAGCGCAGTCAAGTGGC-------------------------------------------ATAGTTTTGCA-TA--GTGAT-ATTGTGGCGAGCACGATCGCTGCC--CCTACTTTCTTTCGTCGA---GGA-CAGG-------ACAGATACAGTTATT--GC-G--AGA
droWil2 scf2_1100000004902:3314837-3315062 + CCTGTACATTGTCATACACA-GCGTTTGTCGTGTTGGAATT-TTAAAGCATAAAATTAGGTAA-AAA-T---TATTATA-TTC-CGCTTG---------------------------------------------------------------GTGAAGAGAAAAAACAAAACGAA------------------------------------------------TTCCGAAAT----TGGTCAGCGGCGGACTGGATACAACTAAGAAGGCAGTGTAAGAAGAAAT---GTACTT---ATCTACCTA--------TC------GGCACG-----CACTTTCTTTTTCACCTT-------TG-------ACGGCAACAACGACT--CT-G--ACA
droAna3 scaffold_13340:21537105-21537162 + C------------------A-GCCAGTGTCGTGTTGGAATT-TTAAAGCATAAAATTAGGTAA-AAT-T---AATTGTT-TTGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396413:1001440-1001489 - --------------------------TGTCGTGTTGGAATT-TTAAAGCATAAAATTAGGTAA-ATT-T---AATTGTT-TTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302466:537970-538183 + C--------------------GCG-TTG-TGTGTTGGAATT--TAAACCATAAAACTAGGTAA-ATTGT---GATTGTT-TT-CAAGATTAAGCC--------CCCAAGTGACACACT-----CTGTGAT-----AAGTACCCCGC-----CCCTGGAA--------------------------------------------CCGAGAAAACGACGTTGGTGACTCCGCAAT----TGGC-------------------------------------------GTTGGCTTGC---TCTTT-------------GCTTTG-CGGGCGC-----AACTTTCTTTCGTGGCTTCGGGACAGAATTG-AGAAAGGTA------TA-----GCC--A
droFic1 scf7180000453912:622162-622389 - A--------------------ACGCTTGTCGTGTTGGAATTTTTGAAGCATAAAATTAGGTAA-ATTGT---GATTGTT-TATCGGCTTTAAGCCAAGATTCCTGTGACGAATACGATCTTTCGAGTCTTGATATTAAAACG-TGACAAAAGCGTGAAC--------------------------------------------GGAAT---AC--ACCCGGTGACTTTGCAAT--------------------------------------------------------TGCTCA-ATTCTT----T--------GTCGCGATCACCAC-----GACTTTTGTCGGTCGA---GGA-GAGATTGGAAGAAAATTGGA-----------A--GGG
droEle1 scf7180000491047:1015142-1015356 + A---------------CACAGTCGCTTGTCGTGTTGGAATT--TAAAGCATAAAATTAGGTAA-ATTGT---GATTGCT-CTTCGGCTTTAAGCTCAGAATCCTGTGACAAACTCAAC-----TATTGTTCATAT------A-AAA-----GTGTGAAG-----------------------------------------ACATTAGGAAATA--AGCCAGTGACTTTGCAAT--------------------------------------------------------TTCCTT--TTTTT----T--------ACCTCGATCACCGT-----GACTTTCTTTAGTTCC---GGG-GAA-----------------TGGCTAATC-AGCATTA
droRho1 scf7180000777841:29636-29839 - -------------------------TCGTCGTGTTGGAATT--TAAAGCATAAAATTAGGTAA-ATTGT---GATTGTT-TATCGGCTTTAAGCTCGAAATCCTGTTAAGAACACATT-----GATTGTT---TATAC---A-AAA-----GAGTGAAG-----------------------------------------ACAATAAGAAAAT--AGCTAGTGACTTAGCAAT--------------------------------------------------------TTCCCTTTTTTTT----T--------GTGCCGATCACTGT-----GACTTTCTTTCATTGC---GGA-GAGA-------AGAATTGCA--------------AGG
droBia1 scf7180000302402:2935472-2935694 - CCTATCAT-------ACACAAACGCTTGTCGTGTTGGAATT--TAAAGCATAAAATTGGGTAA-ATTGT---GATTGTT-TTTCGGCGATCAGACCACAATCCTGTTCAGAACACGTA-----GTGCATT---GTATAGAAA-TGA-----TTGTGAAA--------------------------------------------CCAAGAGTTT--AGCCAGTGACCTTCCATT--------------------------------------------------------GGCTAT-TTCTTC----C--------GCCTCGATCGCCGC-----AACTTTCTTTCTCTGT---GCA-GTAA-------AGAACTGCACGACT------------
droTak1 scf7180000415380:1062334-1062562 - CGACGGTC-----GCACTAA-TCGCTTGTCGTGTTGGAATT--TAAAGCATAAAATTGGGTAA-ATTGT---GATTGTT-TTTCGGCGTTCGGCTTAGAAT-CGGCAGAGATCACTTC-----GCGACGA---GTTTGGAAA-TGA-----CTGTGAAG--------------------------------------------TGAGGAGTTG--AGCCAGTGTCTCATCGAT--------------------------------------------------------TTCCCC-GTCTTC----C--------GCCGCGGCCGCCGC-----CACTTTCTTTTGTCGA---GGA-GAAA-----------ATGCATGCCTAATC-AGC-AGA
droEug1 scf7180000409584:388538-388742 + AC-----------------A-AATCTTGTCGTGTTGGAATT--TAAAGCATAAAATTAGGTAA-ATTCT---GATTATTTTAGCGGCATCGTGCTGAGAAATTTGTAAATAACAAGAT-----ATTTGTT---GTCAATAAG-TGATA---TTGTGAAA--------------------------------------------GTGAGAACAC--AACCTATGCCTTTGCAAA--------------------------------------------------------GCCACA-TTCTTT-------------GTCACGATCACCGC-----CGCTTTCTTTCGTTGT---GTT-GTTG-------T-------------------G--AAA
dm3 chr3R:10134064-10134282 - A--------------------ACGCTTGTCGTGTTGGAATT--TAAAGCATAAAATTAGGTAA-ATTGT---GATTTAT-TATCGGAAATGCGGTCAAAACCCTTTAAGGAACGCATC-----CCGTGAT---ATGAGGACA-TGT-----TTGTGAAG--------------------------------------------CAAATACCTT--AGCCAGTGACTTGATAAT--------------------------------------------------------TTCACG-CTCTTT----A--------TCGGCGATGGCAGT-----CACTTTCTTTCGCTGC---GGA-GCAG-------AAAAGTGCACTTCTAATC-AGCA--A
droSim2 3r:11074298-11074516 + A--------------------ACGCTTGTCGTGTTGGAATT--TAAAGCATAAAATTAGGTAA-ATTGT---GATTTAT-TATCGGCAATGCGGTCAAAACCCTTTAAGGATCGCATC-----CCGTGAT---ATAAGGACA-TGT-----TTGTGAAG--------------------------------------------TAAATAACTC--AGCCAGTGACTTGATAAT--------------------------------------------------------TTTACG-CTCGTT----A--------TCGGCGATGGCAGC-----CACTTTCTTTCGCTGC---GGA-GCAG-------AAAAGTGCACTTCTAATC-AGCA--A
droSec2 scaffold_0:11905719-11905942 + A--------------------ACGCTTGTCGTGTTGGAATT--TAAAGCATAAAATTAGGTAA-ATTGT---GATTTAT-TATCGGAAATGCGGTCAAAACCCTTTAAGGAACGCATT-----CCGTGAT---ATAAGGACA-TGC-----TTGTGAAG--------------------------------------------CAAATAACTT--AGCTAGTGACTTGATAAT--------------------------------------------------------TTTACG-CTCGTT----A--------TCGGCGATGGCAGCCACTCCACTTTCTTTCGCTGC---GGA-GCAG-------AAAAGTGCACTTCTAATC-AGCA--A
droYak3 3R:16313124-16313333 + A--------------------ACGCTTGTCGTGTTGGAATT--TAAAGCATAAAATTAGGTAA-ATTGT---GATTTAT-TATCGGCGCTGCGGCCAAAATCCTGTAAGGAACACCTC-----GCGTTTT---GTAAGGATA-TGT-----TTGTGAAA--------------------------------------------CGAATAAGTT--AGCCAGTGACTTGATAAT--------------------------------------------------------TTAACT-TTCTTT----A--------TCGCCGATGGCAGC-----AACTTTCTTTCGTTGC---GGA-GCAG-------AAAAGTGCACTTAT------------
droEre2 scaffold_4770:9667028-9667240 - A--------------------ACGCTTGTCGTGTTGGAATT--TAAAGCATAAAATTAGGTAA-ATTGT---GATTTAT-TATCGGCACTGCGGCCGAAATCCTGTAAGGAACACAAC-----GCGTTCT---GTAAGGAAA-TGT-----TTGTGAAA--------------------------------------------CTAATAAGTT--AGCCAGTGACTTGAATAT--------------------------------------------------------TGTACT-TTCCTT----A--------TCGCCGATGACAGC-----AACTTTCTTTCGATGC---GGA-GCAG-------AAAAGTGCATTTATAAT---------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
CCTGTACA-------ACACA-GCGCTTGTCGTGCTGGAATT-TTGAAGCACAGAGTTAGGTATTATTATTATTATTATT-TTGTGGTGTCAA-----------TGTTAAAAACGCAGC-------------------------------------------------------ATATATATTCATTCGGTTGTGAGCTAGATCTCGGG-AAGTGGCGC-AGTCACAGCGCAGTCAAGTGGC-------------------------------------------ATAGTTTTGCA-TT--GTGAT-ATTGTGGCGAGCACGATCGCTGCC--CCTACTTTCTTTCGTCGA---GGA-CTGG-------ACAGATACAGTTATT--GC-G--AGASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................................................................................................................................................................TATATTCATTCGGTTGTGAGCTAGATC...............................................................................................................................................................................................2712.0020000000020
........................................................................................................................................................................................................................................................................................................TT--GTGAT-ATTGTGGCGAGC............................................................................1911.0010100000000
...................................................................................................................AGC-------------------------------------------------------ATATATATTCATTCGG.............................................................................................................................................................................................................1911.0010100000000
.......................................................................................................................................................................................................................................................................................................................GGCGAGCACGATCGCTGCC--C.............................................................2011.0010100000000
........................................................................................................................................................................................................................................................................................................TT--GTGAT-ATTGTGGCGAG.............................................................................1811.0010000000010
.............................................................................................................................................................................................TTGTGAGCTAGATCTCGGG-AAGTGG...................................................................................................................................................................................2511.0010000000010
.........................................................................ATTATT-TTGTGGTGTCAA-----------TGTT...............................................................................................................................................................................................................................................................................................2211.0010100000000
...............................................................................................................................................................................................GTGAGCTAGATCTCGGG-AAGT.....................................................................................................................................................................................2111.0010100000000
.............................................................................................................................................................................................................................................................................................TAGTTTTGCA-TT--GTGAT-ATTG....................................................................................2111.0010000001000
....................................................................................................................................................................................................CTAGATCTCGGG-AAGTGGC..................................................................................................................................................................................1911.0010000000010
droPer2
CCTGTACA-------ACACA-GCGCTTGTCGTGCTGGAATT-TTGAAGCACAGAGTTAGGTATTATTATTATTATTATT-TTGTGGTGTCAA-----------TGTTAAAAACGCAGC-------------------------------------------------------ATATATATTCAATCGGTTGTGAGCTAGATCTCGGG-AAGTGGCGC-AGTCACAGCGCAGTCAAGTGGC-------------------------------------------ATAGTTTTGCA-TA--GTGAT-ATTGTGGCGAGCACGATCGCTGCC--CCTACTTTCTTTCGTCGA---GGA-CAGG-------ACAGATACAGTTATT--GC-G--AGASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........................................................................ATTATT-TTGTGGTGTCAA-----------T..................................................................................................................................................................................................................................................................................................1911.001010000
..........................................TTGAAGCACAGAGTTAGGTATT..........................................................................................................................................................................................................................................................................................................................................2211.001000001
droWil2
CCTGTACATTGTCATACACA-GCGTTTGTCGTGTTGGAATT-TTAAAGCATAAAATTAGGTAA-AAA-T---TATTATA-TTC-CGCTTG---------------------------------------------------------------GTGAAGAGAAAAAACAAAACGAA------------------------------------------------TTCCGAAAT----TGGTCAGCGGCGGACTGGATACAACTAAGAAGGCAGTGTAAGAAGAAAT---GTACTT---ATCTACCTA--------TC------GGCACG-----CACTTTCTTTTTCACCTT-------TG-------ACGGCAACAACGACT--CT-G--ACASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................................................................................................................................................................................................................................AAT----TGGTCAGCGGCGGACTGGAT.........................................................................................................................................2311.00101000
....TACATTGTCATACACA-GCGTTTGTCG...........................................................................................................................................................................................................................................................................................................................................................................2611.00101000
CCTGTACATTGTCATACACA-GCG..................................................................................................................................................................................................................................................................................................................................................................................2311.00101000
.............................................................................................................................................................................................................................................................................................................................................................CTT-------TG-------ACGGCAACAACGACT--C........2111.00110000
..................................................................A-T---TATTATA-TTC-CGCTTG---------------------------------------------------------------GTGT.............................................................................................................................................................................................................................................2211.00100010
droAna3
C------------------A-GCCAGTGTCGTGTTGGAATT-TTAAAGCATAAAATTAGGTAA-AAT-T---AATTGTT-TTGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
--------------------------TGTCGTGTTGGAATT-TTAAAGCATAAAATTAGGTAA-ATT-T---AATTGTT-TTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
C--------------------GCG-TTG-TGTGTTGGAATT--TAAACCATAAAACTAGGTAA-ATTGT---GATTGTT-TT-CAAGATTAAGCC--------CCCAAGTGACACACT-----CTGTGAT-----AAGTACCCCGC-----CCCTGGAA--------------------------------------------CCGAGAAAACGACGTTGGTGACTCCGCAAT----TGGC-------------------------------------------GTTGGCTTGC---TCTTT-------------GCTTTG-CGGGCGC-----AACTTTCTTTCGTGGCTTCGGGACAGAATTG-AGAAAGGTA------TA-----GCC--ASizeHit CountTotal NormTotal
No Reads
droFic1
A--------------------ACGCTTGTCGTGTTGGAATTTTTGAAGCATAAAATTAGGTAA-ATTGT---GATTGTT-TATCGGCTTTAAGCCAAGATTCCTGTGACGAATACGATCTTTCGAGTCTTGATATTAAAACG-TGACAAAAGCGTGAAC--------------------------------------------GGAAT---AC--ACCCGGTGACTTTGCAAT--------------------------------------------------------TGCTCA-ATTCTT----T--------GTCGCGATCACCAC-----GACTTTTGTCGGTCGA---GGA-GAGATTGGAAGAAAATTGGA-----------A--GGGSizeHit CountTotal NormTotal
No Reads
droEle1
A---------------CACAGTCGCTTGTCGTGTTGGAATT--TAAAGCATAAAATTAGGTAA-ATTGT---GATTGCT-CTTCGGCTTTAAGCTCAGAATCCTGTGACAAACTCAAC-----TATTGTTCATAT------A-AAA-----GTGTGAAG-----------------------------------------ACATTAGGAAATA--AGCCAGTGACTTTGCAAT--------------------------------------------------------TTCCTT--TTTTT----T--------ACCTCGATCACCGT-----GACTTTCTTTAGTTCC---GGG-GAA-----------------TGGCTAATC-AGCATTASizeHit CountTotal NormTotal
No Reads
droRho1
-------------------------TCGTCGTGTTGGAATT--TAAAGCATAAAATTAGGTAA-ATTGT---GATTGTT-TATCGGCTTTAAGCTCGAAATCCTGTTAAGAACACATT-----GATTGTT---TATAC---A-AAA-----GAGTGAAG-----------------------------------------ACAATAAGAAAAT--AGCTAGTGACTTAGCAAT--------------------------------------------------------TTCCCTTTTTTTT----T--------GTGCCGATCACTGT-----GACTTTCTTTCATTGC---GGA-GAGA-------AGAATTGCA--------------AGGSizeHit CountTotal NormTotal
No Reads
droBia1
CCTATCAT-------ACACAAACGCTTGTCGTGTTGGAATT--TAAAGCATAAAATTGGGTAA-ATTGT---GATTGTT-TTTCGGCGATCAGACCACAATCCTGTTCAGAACACGTA-----GTGCATT---GTATAGAAA-TGA-----TTGTGAAA--------------------------------------------CCAAGAGTTT--AGCCAGTGACCTTCCATT--------------------------------------------------------GGCTAT-TTCTTC----C--------GCCTCGATCGCCGC-----AACTTTCTTTCTCTGT---GCA-GTAA-------AGAACTGCACGACT------------SizeHit CountTotal NormTotal
No Reads
droTak1
CGACGGTC-----GCACTAA-TCGCTTGTCGTGTTGGAATT--TAAAGCATAAAATTGGGTAA-ATTGT---GATTGTT-TTTCGGCGTTCGGCTTAGAAT-CGGCAGAGATCACTTC-----GCGACGA---GTTTGGAAA-TGA-----CTGTGAAG--------------------------------------------TGAGGAGTTG--AGCCAGTGTCTCATCGAT--------------------------------------------------------TTCCCC-GTCTTC----C--------GCCGCGGCCGCCGC-----CACTTTCTTTTGTCGA---GGA-GAAA-----------ATGCATGCCTAATC-AGC-AGASizeHit CountTotal NormTotal
No Reads
droEug1
AC-----------------A-AATCTTGTCGTGTTGGAATT--TAAAGCATAAAATTAGGTAA-ATTCT---GATTATTTTAGCGGCATCGTGCTGAGAAATTTGTAAATAACAAGAT-----ATTTGTT---GTCAATAAG-TGATA---TTGTGAAA--------------------------------------------GTGAGAACAC--AACCTATGCCTTTGCAAA--------------------------------------------------------GCCACA-TTCTTT-------------GTCACGATCACCGC-----CGCTTTCTTTCGTTGT---GTT-GTTG-------T-------------------G--AAASizeHit CountTotal NormTotal
No Reads
dm3
A--------------------ACGCTTGTCGTGTTGGAATT--TAAAGCATAAAATTAGGTAA-ATTGT---GATTTAT-TATCGGAAATGCGGTCAAAACCCTTTAAGGAACGCATC-----CCGTGAT---ATGAGGACA-TGT-----TTGTGAAG--------------------------------------------CAAATACCTT--AGCCAGTGACTTGATAAT--------------------------------------------------------TTCACG-CTCTTT----A--------TCGGCGATGGCAGT-----CACTTTCTTTCGCTGC---GGA-GCAG-------AAAAGTGCACTTCTAATC-AGCA--ASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................GCTTGTCGTGTTGGAATT--...............................................................................................................................................................................................................................................................................................................................................................1817.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000021001001000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................CAGT-----CACTTTCTTTCGCTGC---G........................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
............................TCGTGTTGGAATT--TAAAGCAA.......................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................CGCTGC---GGA-GCAG-------AAAAGTG...................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000010000000000000000000000000000000000000000000000000
.............................CGTGTTGGAATT--TAAAGCA........................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000
.............................................................................................................................GTGAT---ATGAGGACA-TGT-----TTGT...............................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.......................GCTTGTCGTGTTGGAATC--...............................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
...................................................AAAATTAGGTAA-ATTGT---G.................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................CACTTTCTTTCGCTGC---GGA-GC...................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................TAT-TATCGGAAATGCGGTCAAAACCCTT.................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................ACGCATC-----CCGTGAT---ATGAGGAAT-C..........................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................ATAAAATTAGGTAA-ATTGT---GATTTAT-..........................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
...............................................................................................................................................................................................................................................................................................................................................ACTTTCTTTCGCTGC---GGA-GCAG-------..........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.......................................................................................................................................................TTGTGAAG--------------------------------------------CAAATACCTT--AGCCAG.............................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
A--------------------ACGCTTGTCGTGTTGGAA...................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
.....................ACGCTTGTCGTGTTGGAATT--TAAAGCA........................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
......................................................................................................CTTTAAGGAACGCATC-----CCGTG..........................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.....................ACGCTTGTCGTGTTGGAA...................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................TTCGCTGC---GGA-GCAG-------AAAAGT....................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
......................CGCTTGTCGTGTTGGAATT--TAAAGC.........................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................CGCATC-----CCGTGAT---ATGAGGAC.............................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
..........................TGTCGTGTTGGAATT--TAAAG..........................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................ACGCTTGTCGTGTTGGAATT--T..............................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................TTTAT-TATCGGAAATGCGGTC..........................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................CGCTGC---GGA-GCAG-------AAAAGTGCACTT..............2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................AATACCTT--AGCCAGTGACTTGATAAT--------------------------------------------------------T........................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................ATCGGAAATGCGGTCAAA.......................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................TGT---GATTTAT-TATCGGAAATG...............................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.......................................................................................................................................................................................................................................AT--------------------------------------------------------TTCACG-CTCTTT----A--------TCGGCGATGGC....................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................AGCATAAAATTAGGTAA-ATTGT---G.................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..............................GTGTTGGAATT--TAAAGCATA......................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................ATAAAATTAGGTAA-ATTGT---GA................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000
A--------------------ACGCTTGTCGTGTTGGT....................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
...............................................................................................................ACGCATC-----CCGTGAT---ATGAGGA..............................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
......................................................................................................................................TGAGGACA-TGT-----TTGTGAAG--------------------------------------------CA.............................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................TTTCGCTGC---GGA-GCAG-------AAAAGTGCA.................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................T---ATGAGGACA-TGT-----TTGTGAAG--------------------------------------------CAA............................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................................................................................................................................ATGAGGACA-TGT-----TTGTGA.............................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.......................................................................................................................................................TTGTGAAG--------------------------------------------CAAATACCTT--AGCCAGT............................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................ATTTAT-TATCGGAAATGCGGT...........................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................AT---ATGAGGACA-TGT-----TTGTGAAG--------------------------------------------...............................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................TCGCTGC---GGA-GCAG-------AAAAGTG...................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
............................................AAAGCATAAAATTAGGTAA-ATTG......................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................GCTGC---GGA-GCAG-------AAAAGTGCAC................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................TCTTT----A--------TCGGCGATGGCAGT-----C...........................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................CTCTTT----A--------TCGGCGATGGCAG..................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................GTGTTGGAATT--TAAAGCATT......................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
A--------------------ACGCTTGTCGTGTTGGAATT--...............................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................ATTTAT-TATCGGAAATGCGGTC..........................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................AACGCATC-----CCGTGAT---ATGAGGA..............................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
............................TCGTGTTGGAATT--TAAAGCAT.......................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................CGCATC-----CCGTGAT---ATGAGGA..............................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
........................................................................GATTTAT-TATCGGAAATGCGGTC..........................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
.......................................TT--TAAAGCATAAAATTAGGT.............................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
..........................................................................TTTAT-TATCGGAAATGCGGTCAAAACCCT..................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................TATCGGAAATGCGGTCAAAACCCTT.................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................AT-TATCGGAAATGCGGTCAAAACCCTT.................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.......................................................................................................TTTAAGGAACGCATC-----CCGTGA.........................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.................................................ATAAAATTAGGTAA-ATTG......................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
........................................................................................................................................AGGACA-TGT-----TTGTGAAG--------------------------------------------CAAATA.........................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................TTGATAAT--------------------------------------------------------TTCACG-CTCTTT----A--------TCGGC..........................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................ATC-----CCGTGAT---ATGAGGACA-TG.........................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..........................TGTCGTGTTGGAATT--TAAA...........................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
A--------------------ACGCTTGTCGTGTTGGAATT--TAAAGCATAAAATTAGGTAA-ATTGT---GATTTAT-TATCGGCAATGCGGTCAAAACCCTTTAAGGATCGCATC-----CCGTGAT---ATAAGGACA-TGT-----TTGTGAAG--------------------------------------------TAAATAACTC--AGCCAGTGACTTGATAAT--------------------------------------------------------TTTACG-CTCGTT----A--------TCGGCGATGGCAGC-----CACTTTCTTTCGCTGC---GGA-GCAG-------AAAAGTGCACTTCTAATC-AGCA--ASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................TGTCGTGTTGGAATT--TAAAGCATA......................................................................................................................................................................................................................................................................................................................................................2415.00500000002300000000
.........................................................................ATTTAT-TATCGGCAATGC..............................................................................................................................................................................................................................................................................................................1812.00200200000000000000
.........................................................................ATTTAT-TATCGGCAATGCGGT...........................................................................................................................................................................................................................................................................................................2111.00100000000100000000
..............................................................................................................ATCGCATC-----CCGTGAT---ATAAGG...............................................................................................................................................................................................................................................................2111.00100000000010000000
........................................................................................................................................................................................................................................T--------------------------------------------------------TTTACG-CTCGTT----A--------TCGGCGATGGC....................................................................2511.00100000000001000000
......................................................................................CAATGCGGTCAAAACCCTTTAAGGATCGC.......................................................................................................................................................................................................................................................................................2911.00100001000000000000
.................................................ATAAAATTAGGTAA-ATTGT---G.................................................................................................................................................................................................................................................................................................................................2011.00100000000000100000
.................................................................................................................................................................................................................................................................................................TTTACG-CTCGTT----A--------TCGGCGAT.......................................................................2111.00100000000100000000
...............................................GCATAAAATTAGGTAA-ATTG......................................................................................................................................................................................................................................................................................................................................2011.00110000000000000000
...................................................................................................................................................................................................................................................................................................TACG-CTCGTT----A--------TCGGCGATGG.....................................................................2111.00100000000100000000
......................CGCTTGTCGTGTTGG.....................................................................................................................................................................................................................................................................................................................................................................1511.00100000001000000000
A--------------------ACGCTTGTCGTGTTGG.....................................................................................................................................................................................................................................................................................................................................................................1711.00100000000001000000
..................................................................................................................................................................................................................................................................................................................................TGGCAGC-----CACTTTCTTTCGCT..............................................2111.00100000000100000000
........................................................................................................................................................................................................................................................................................................................................C-----CACTTTCTTTCGCTGC---GGA-G....................................2111.00100000010000000000
droSec2
A--------------------ACGCTTGTCGTGTTGGAATT--TAAAGCATAAAATTAGGTAA-ATTGT---GATTTAT-TATCGGAAATGCGGTCAAAACCCTTTAAGGAACGCATT-----CCGTGAT---ATAAGGACA-TGC-----TTGTGAAG--------------------------------------------CAAATAACTT--AGCTAGTGACTTGATAAT--------------------------------------------------------TTTACG-CTCGTT----A--------TCGGCGATGGCAGCCACTCCACTTTCTTTCGCTGC---GGA-GCAG-------AAAAGTGCACTTCTAATC-AGCA--ASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...................................................................................................................................................................................................................TT--AGCTAGTGACTTGATAAT--------------------------------------------------------T........................................................................................................2111.0011000
......................................................ATTAGGTAA-ATTGT---GATTTAT-..........................................................................................................................................................................................................................................................................................................................2111.0010001
.......................................TT--TAAAGCATAAAATTAG...............................................................................................................................................................................................................................................................................................................................................1811.0010010
......................................................................................................................................................................................................................................................................................................G-CTCGTT----A--------TCGGCGATGGCAGC.................................................................2211.0010010
.............................................AAGCATAAAATTAGGTAA-ATTG......................................................................................................................................................................................................................................................................................................................................2211.0010100
.........................................................................ATTTAT-TATCGGAAATGC..............................................................................................................................................................................................................................................................................................................1820.5011000
droYak3
A--------------------ACGCTTGTCGTGTTGGAATT--TAAAGCATAAAATTAGGTAA-ATTGT---GATTTAT-TATCGGCGCTGCGGCCAAAATCCTGTAAGGAACACCTC-----GCGTTTT---GTAAGGATA-TGT-----TTGTGAAA--------------------------------------------CGAATAAGTT--AGCCAGTGACTTGATAAT--------------------------------------------------------TTAACT-TTCTTT----A--------TCGCCGATGGCAGC-----AACTTTCTTTCGTTGC---GGA-GCAG-------AAAAGTGCACTTAT------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................................................................................................TCCTGTAAGGAACACCTC-----GC.............................................................................................................................................................................................................................................................................2011.00100100000000
droEre2
A--------------------ACGCTTGTCGTGTTGGAATT--TAAAGCATAAAATTAGGTAA-ATTGT---GATTTAT-TATCGGCACTGCGGCCGAAATCCTGTAAGGAACACAAC-----GCGTTCT---GTAAGGAAA-TGT-----TTGTGAAA--------------------------------------------CTAATAAGTT--AGCCAGTGACTTGAATAT--------------------------------------------------------TGTACT-TTCCTT----A--------TCGCCGATGACAGC-----AACTTTCTTTCGATGC---GGA-GCAG-------AAAAGTGCATTTATAAT---------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
................................GTTGGAATT--TAAAGCATAA.....................................................................................................................................................................................................................................................................................................................................................1911.0010000010
.................................................ATAAAATTAGGTAA-ATTGT---G.................................................................................................................................................................................................................................................................................................................................2011.0010000010
.......................GCTTGTCGTGTTGGAATT--...............................................................................................................................................................................................................................................................................................................................................................1811.0011000000
.................................................ATAAAATTAGGTAA-ATTGT---GA................................................................................................................................................................................................................................................................................................................................2111.0010010000
..................................................................................................AATCCTGTAAGGAACACAAC-----GC.............................................................................................................................................................................................................................................................................2211.0011000000

Generated: 05/17/2015 at 10:34 PM