dps_494

CDS [Dpse\GA19046-cds]; CDS [Dpse\GA19046-cds]; exon [Dpse\GA19046:4]; intron [Dpse\GA19046-in]; intron [Dpse\GA19046-in]; intron [Dpse\GA19046-in]

Name	Class	Family	Strand
(T)n	Simple_repeat	Simple_repeat	+

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ATGAAGCGTCAGCCGAGAGATCCGTATCGCGACAACTTGGTCAACCGCAGGTCAGGACAAACTTAACGCTAAGTTTTAATCAAAAAAAAAAAAAAAAAAAAAAACAACAAAAAACCAAAACCAATCAATATCCAAGTGTTAAACATCCAATCTTTTAGTTGATTAGTTAAGAAACTACTAGAAAATGAACAAACATGCAACCATCTTTTTACTTTAAACGATTTGAAATTTGTTTGATGTGTTGTGGTCGT ***************************************************..((.(((((((....)))))))...))....................****************************************************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	GSM343916 embryo	M040 female body	M059 embryo	SRR902011 testis	M062 head	SRR902010 ovaries
..................................................................................AAAAAAAAAAAAAAAAAAA......................................................................................................................................................	19	0	20	13.55	271	0	271	0	0	0	0
...................................................................................AAAAAAAAAAAAAAAAAAAAACAACAAACAAACAAA....................................................................................................................................	36	2	1	2.00	2	2	0	0	0	0	0
..................................................................................AAAAAAAAAAAAAAAAAAAAAACAAAAAAAAACCAA.....................................................................................................................................	36	1	1	2.00	2	2	0	0	0	0	0
.................................................................................AAAAAAAAAAAAAAAAAAACAAAGAACACAAAACCA......................................................................................................................................	36	3	1	1.00	1	1	0	0	0	0	0
.................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAACACAAAACCA......................................................................................................................................	36	2	1	1.00	1	1	0	0	0	0	0
..................................................................................AAAAAAAAAAAAAACACAAAAACAACAAACAACCAA.....................................................................................................................................	36	3	1	1.00	1	1	0	0	0	0	0
...................................................................................AAAAAAAAAAAAAAAAAAAAACAACACACAACCAAA....................................................................................................................................	36	2	1	1.00	1	1	0	0	0	0	0
.................................................................................AAAAAAAAAAAAAAAAAACAAAACAACCAAAAACCA......................................................................................................................................	36	2	1	1.00	1	1	0	0	0	0	0
.................................................................................AAAAAAAAAAAAAAAAAAAAAAACAACAAAAAACAA......................................................................................................................................	36	1	1	1.00	1	1	0	0	0	0	0
........................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAACCAAAACCAA...............................................................................................................................	36	2	1	1.00	1	1	0	0	0	0	0
.......................................................................................AAAAAAAAAAAAAAAAACACCACAAAAACAAAACCA................................................................................................................................	36	3	1	1.00	1	1	0	0	0	0	0
..................................................................................AAAAAAAAAAAAAAAAAAAAAACAAAAAAACACCAA.....................................................................................................................................	36	2	1	1.00	1	1	0	0	0	0	0
..................................................................................AAAAAAAAAAAAAAAAAAAAAACAAAAAAACACCA......................................................................................................................................	35	2	1	1.00	1	1	0	0	0	0	0
.................................................................................AAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAACCA......................................................................................................................................	36	1	1	1.00	1	1	0	0	0	0	0
....................................................................................AAAAAAAAAAAAAAAAAAAAGAACAACAAACCAACA...................................................................................................................................	36	3	1	1.00	1	1	0	0	0	0	0
..................................................................................AAAAAAAAAAAAAAAAAGAAAACAACAAACAAACAA.....................................................................................................................................	36	3	1	1.00	1	1	0	0	0	0	0
..................................................................................AAAAAAAAAAAAAAAAAAAAAAAAACAAAAAACCA......................................................................................................................................	35	1	1	1.00	1	1	0	0	0	0	0
.................................................................................AAAAAAAAAAAAAAAAAAAAAAACAACAAAACACA.......................................................................................................................................	35	2	1	1.00	1	1	0	0	0	0	0
..................................................................................AAAAAAAAAAAAAAAAAAAAAACAACAACACAACAA.....................................................................................................................................	36	3	1	1.00	1	1	0	0	0	0	0
.................................................................................AAAAAAAAAAAAAAAAAAAAAAACACCAAAAACCCA......................................................................................................................................	36	2	1	1.00	1	1	0	0	0	0	0
.................................................................................AAAAAAAAAAAAAAAAAAAAAAACAACAAAAAAACA......................................................................................................................................	36	1	1	1.00	1	1	0	0	0	0	0
....................................................................................AAAAAAAAAAAAAAAATAAACAACAACAAACCAACA...................................................................................................................................	36	3	1	1.00	1	1	0	0	0	0	0
.................................................................................AAAAAAAAAAAAAAAAAAAAAAACACCAAAAAACA.......................................................................................................................................	35	2	1	1.00	1	1	0	0	0	0	0
.................................................................................AAAAAAAAAAAAAAAAAAAAAAACACGAACAAACCA......................................................................................................................................	36	3	1	1.00	1	1	0	0	0	0	0
..................................................................................AAAAAAAAAAAAAAAAAAAAAACAACACAAAACGCA.....................................................................................................................................	36	3	1	1.00	1	1	0	0	0	0	0
.................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAACAAAACACCA......................................................................................................................................	36	2	1	1.00	1	1	0	0	0	0	0
.....................................................AGGACAAACTTAACGCTAAGTT................................................................................................................................................................................	22	0	1	1.00	1	0	0	1	0	0	0
.............................................................................AAACAAAAAAAAAAAAAAAAAAAAAAACAACACAAA..........................................................................................................................................	36	2	1	1.00	1	1	0	0	0	0	0
..................................................................................AAAAAAAAAAAAAAAAAAAAAAAAACAACAAACCA......................................................................................................................................	35	2	1	1.00	1	1	0	0	0	0	0
......................................................................................AAAAAAAAAAAAAAAAAACAACAAAAAAACAAAACA.................................................................................................................................	36	2	1	1.00	1	1	0	0	0	0	0
...................................................................................AAAAAAAAAAAAAAAAAAAAAAAACAAAAAACCAAA....................................................................................................................................	36	1	2	1.00	2	2	0	0	0	0	0
...................................................................................AAAAAAAAAAAAAAAAAAAAACAACACACAAACAAA....................................................................................................................................	36	3	1	1.00	1	1	0	0	0	0	0
......................................................................................AAAAAAAAAAAAAAAAAACAACAAAACACCAAGCC..................................................................................................................................	35	3	1	1.00	1	1	0	0	0	0	0
..................................................................................AAAAAAAAAAAAAAAAAAAAAACAACACAAAAACA......................................................................................................................................	35	2	1	1.00	1	1	0	0	0	0	0
..................................................................................AAAAAAAAAAAAAAAAAAAAAACAACAAACAAACAA.....................................................................................................................................	36	2	1	1.00	1	1	0	0	0	0	0
.......................................................................................AAAAAAAAAAAAAAAAACAAGAAAAAAACAAACCCA................................................................................................................................	36	3	1	1.00	1	1	0	0	0	0	0
............................................................................TAATCAAAAAAAAAAAAAAAAAAAAA.....................................................................................................................................................	26	0	2	1.00	2	0	0	0	2	0	0
...................................................................................AAAAAAAAAAAAAAAAAAAAACACCAAAAACACAAA....................................................................................................................................	36	3	1	1.00	1	1	0	0	0	0	0
..................................................................................AAAAAAAAAAAAAAAAAAAAAAAAACCAAAAACCA......................................................................................................................................	35	2	1	1.00	1	1	0	0	0	0	0
.................................................................................AAAAAAAAAAAAAAAAAAAAAAACAACAACACCCC.......................................................................................................................................	35	3	1	1.00	1	1	0	0	0	0	0
.......................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAACCAAGACCA................................................................................................................................	36	3	1	1.00	1	1	0	0	0	0	0
..................................................................................AAAAAAAAAAAAAAAAAAAAAAAAACACAAAACCA......................................................................................................................................	35	2	1	1.00	1	1	0	0	0	0	0
...................................................................................AAAAAAAAAAAAAAAAAACAACCACAAACAACCAA.....................................................................................................................................	35	3	1	1.00	1	1	0	0	0	0	0
.................................................................................AAAAAAAAAAAAAAAAAAAAAAACAAAAAACAACCA......................................................................................................................................	36	2	1	1.00	1	1	0	0	0	0	0
.............................................................................AATCAAAAAACAAAAAAAAAAAAAAAACAATAAAAA..........................................................................................................................................	36	2	1	1.00	1	1	0	0	0	0	0
.................................................................................AAAAAAAAACAAAAAAAAAGAAACAACAAAAAAACA......................................................................................................................................	36	3	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................TTGATTAGTTAAGAAACTA..........................................................................	19	0	1	1.00	1	0	0	1	0	0	0
.....GCGTCAGCCGAGAGATCCGTATCGCGAC..........................................................................................................................................................................................................................	28	0	1	1.00	1	0	0	0	0	1	0
..................................................................................AAAAAAAAAAAAAAAAAAAAAACAACAAAAAAACAA.....................................................................................................................................	36	1	1	1.00	1	1	0	0	0	0	0
.................................................................................AAAAAAAAAAAAAAAAAAAAAAAGAAGAAAAAACCA......................................................................................................................................	36	2	1	1.00	1	1	0	0	0	0	0
.................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAACAACACACC.......................................................................................................................................	35	3	4	0.75	3	3	0	0	0	0	0
................................................................................AAAAAAAAAAAAAAAAAAAAAAAACAACAAAAAACA.......................................................................................................................................	36	2	4	0.75	3	3	0	0	0	0	0
.................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAACAAAACACC.......................................................................................................................................	35	2	3	0.67	2	2	0	0	0	0	0
.................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAACAA......................................................................................................................................	36	2	19	0.53	10	10	0	0	0	0	0
....................................................................................AAAAAAAAAAAAAAAAAAAAAAACAACAAACCAAAA...................................................................................................................................	36	2	2	0.50	1	1	0	0	0	0	0
....................................................................................AAAAAAAAAAAAAAAAAAAAAAACAAACAACCCAAA...................................................................................................................................	36	3	2	0.50	1	1	0	0	0	0	0
...................................................................................AAAAAAAAAAAAAAAAAAAAAAAACACACAACCAAA....................................................................................................................................	36	3	2	0.50	1	1	0	0	0	0	0
.............................................................................AAACCAAAAACAAAAAAAAAAAAAAAACAACAAAAA..........................................................................................................................................	36	3	2	0.50	1	1	0	0	0	0	0
....................................................................................AAAAAAAAAAAAAAAAAAAACAAAAAAAAACCAAC....................................................................................................................................	35	2	2	0.50	1	1	0	0	0	0	0
..................................................................................AAAAAAAAAAAAAAAAAAAAAACAACAAAAAACAAA.....................................................................................................................................	36	1	2	0.50	1	1	0	0	0	0	0
...................................................................................AAAAAAAAAAAAAAAAAAAAAAAACAAAACACCAAA....................................................................................................................................	36	2	2	0.50	1	1	0	0	0	0	0
.................................................................................AAAAAAAAAAAAAAAAAAAAGAACAACAAAAAGCAA......................................................................................................................................	36	3	2	0.50	1	1	0	0	0	0	0
................................................................................AAAAAAAAAAAAAAAAAAAAAAAACAACAAAAACC........................................................................................................................................	35	2	4	0.50	2	2	0	0	0	0	0
.................................................................................AAAAAAAAAAAAAAAAAAAAAAACAACAAAAACACA......................................................................................................................................	36	2	2	0.50	1	1	0	0	0	0	0
...................................................................................AAAAAAAAAAAAAAAAACAACCAACAAATAACC.......................................................................................................................................	33	3	2	0.50	1	1	0	0	0	0	0
....................................................................................AAAAAAAAAAAAAAAAAAAACAACAAAAAACAAACA...................................................................................................................................	36	2	2	0.50	1	1	0	0	0	0	0
..................................................................................AAAAAAAAAAAAAAAAAAAAAAAAACAAAACACCAA.....................................................................................................................................	36	2	2	0.50	1	1	0	0	0	0	0
.................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAACACAACACCA......................................................................................................................................	36	3	2	0.50	1	1	0	0	0	0	0
.................................................................................AAAAAAAAAAAAAAAAAACAAAACAACAAAAACACA......................................................................................................................................	36	3	2	0.50	1	1	0	0	0	0	0
...................................................................................AAAAAAAAAAAAAAAAAAAAACAACAAACACACAAA....................................................................................................................................	36	3	2	0.50	1	1	0	0	0	0	0
....................................................................................AAAAAAAAAAAAAAAAAAAACAACAAAAAACCCCC....................................................................................................................................	35	3	2	0.50	1	1	0	0	0	0	0
.................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAACACACAACCA......................................................................................................................................	36	3	2	0.50	1	1	0	0	0	0	0
....................................................................................AAAAAAAAAAAAAAAAAAGACAACAAAACACAAAAA...................................................................................................................................	36	3	2	0.50	1	1	0	0	0	0	0
..................................................................................AAAAAAAAAAAAAAAAAAAAAAAAACGAGAAACCAA.....................................................................................................................................	36	3	2	0.50	1	1	0	0	0	0	0
.....................................................................................AAAAAAAAAAAAAAAAAAACAACCAAAAACCACAAA..................................................................................................................................	36	3	2	0.50	1	1	0	0	0	0	0
.................................................................................AAAAAAAAAAAAAAAAAAAAAACAAACAAAACACCA......................................................................................................................................	36	3	2	0.50	1	1	0	0	0	0	0
..................................................................................AAAAAAAAAAAAAAAAAAAAAACAACACACAACAAA.....................................................................................................................................	36	3	2	0.50	1	1	0	0	0	0	0
..................................................................................AAAAAAAAAAAAAAAAAAAAAACAACAAAACACAAG.....................................................................................................................................	36	3	2	0.50	1	1	0	0	0	0	0
.................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAACGAAACACCA......................................................................................................................................	36	3	2	0.50	1	1	0	0	0	0	0
..................................................................................AAAAAAAAAAAAAAAAAAAAAACAATATAAAAACAA.....................................................................................................................................	36	3	2	0.50	1	1	0	0	0	0	0
..................................................................................AAAAAAAAAAAAAAAAAAAAAACAACAACACACAAA.....................................................................................................................................	36	3	2	0.50	1	1	0	0	0	0	0
....................................................................................AAAAAAAAAAAACAAAAAAACAAAAAAAAACCAACA...................................................................................................................................	36	3	2	0.50	1	1	0	0	0	0	0
....................................................................................AAAAAAAAAAAAAAAAAAAAAAATAAAAAACCAATA...................................................................................................................................	36	3	2	0.50	1	1	0	0	0	0	0
...................................................................................AAAAAAAAAAAAAAAAAAAAACAACAAACCACAAAA....................................................................................................................................	36	3	2	0.50	1	1	0	0	0	0	0
..................................................................................AAAAAAAAAAAAAAAAAAAAAACAACACAAAACAAA.....................................................................................................................................	36	2	2	0.50	1	1	0	0	0	0	0
.................................................................................AAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAACA......................................................................................................................................	36	2	19	0.47	9	9	0	0	0	0	0
.................................................................................AAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAACAA......................................................................................................................................	36	2	18	0.44	8	8	0	0	0	0	0
.................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAACACAACACC.......................................................................................................................................	35	3	5	0.40	2	2	0	0	0	0	0
....................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCAAAA...................................................................................................................................	36	2	19	0.37	7	7	0	0	0	0	0
..................................................................................AAAAAAAAAAAAAGAAAAAAAAAAACAAAAAACCCA.....................................................................................................................................	36	3	3	0.33	1	1	0	0	0	0	0
...................................................................................AAAAAAAAAAAAAAAAAAAAAAAACAACACACCAAA....................................................................................................................................	36	3	3	0.33	1	1	0	0	0	0	0
...................................................................................AAAAAAAAAAAAAAAAAAAAAAAACGAAGAACCAAA....................................................................................................................................	36	3	3	0.33	1	1	0	0	0	0	0
................................................................................................AAAAAAAACAAAAAAAAGCCAAAACCA................................................................................................................................	27	2	3	0.33	1	0	0	1	0	0	0
.................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAACCAAAAGCCA......................................................................................................................................	36	3	3	0.33	1	1	0	0	0	0	0
...................................................................................AAAAAAAAAAAAAAAAAAAAAAAACAACCAACCAAA....................................................................................................................................	36	3	3	0.33	1	1	0	0	0	0	0
......................................................................................AAAAAAAAAAAAAAAAAACAACAAAAACCAAACAC..................................................................................................................................	35	3	3	0.33	1	1	0	0	0	0	0
...................................................................................AAAAAAAAAAAAAAAAAAAAACAAAAAAACACCACA....................................................................................................................................	36	3	3	0.33	1	1	0	0	0	0	0
.....................................................................................AAAAAAAAAAAAAAAAAAATAACACACAACCAAAA...................................................................................................................................	35	3	3	0.33	1	1	0	0	0	0	0
....................................................................................AAAAAAAAAAAAAAAAAAAAAAACAAAAAACTAAAA...................................................................................................................................	36	2	3	0.33	1	1	0	0	0	0	0
....................................................................................AAAAAAAAAAAAAAAAAAAAAAACACAAAACCAAC....................................................................................................................................	35	3	3	0.33	1	1	0	0	0	0	0
...................................................................................AAAAAAAAAAAAAAAAAAAAAAAACAAAAAACCACA....................................................................................................................................	36	2	3	0.33	1	1	0	0	0	0	0
.................................................................................AAAAAAAAAAAAAAAAAAAAAAACAAAAAAACACC.......................................................................................................................................	35	2	3	0.33	1	1	0	0	0	0	0
............................................................................TTATCAAAAAAAAAAAAAAAAAAAAAAAATACAAAA...........................................................................................................................................	36	3	3	0.33	1	1	0	0	0	0	0
...................................................................................AAAAAAAAAAAAAAAAACAAACAACAAACAAACAAA....................................................................................................................................	36	3	3	0.33	1	1	0	0	0	0	0
....................................................................................AAAAAAAAAAAAAAAAAAAAAAACACAAAACCAAAG...................................................................................................................................	36	3	3	0.33	1	1	0	0	0	0	0
...................................................................................AAAAAACAAAAAAAAAAAAAACAACAAAACAACAAA....................................................................................................................................	36	3	3	0.33	1	1	0	0	0	0	0
..............................................................................AACAAAAAAAAAAAAAAAAAAAAAAACAACAACACA.........................................................................................................................................	36	3	3	0.33	1	1	0	0	0	0	0
....................................................................................AAAAAAAAAAAAAACAAAAACAACAACAAACAAAAA...................................................................................................................................	36	3	3	0.33	1	1	0	0	0	0	0
...................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCAAA....................................................................................................................................	36	2	20	0.30	6	6	0	0	0	0	0
...................................................................................AAAAAAAAAAAAAAAAAAAAACAAAAAAAAAACAAA....................................................................................................................................	36	2	18	0.28	5	5	0	0	0	0	0
..................................................................................AAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAACAA.....................................................................................................................................	36	2	18	0.28	5	5	0	0	0	0	0
..................................................................................AAAAAAAAAAAAAAAAAAAAAACAAAAAAAAACAAA.....................................................................................................................................	36	2	19	0.26	5	5	0	0	0	0	0
..................................................................................AAAAAAAAAAAAAAAAAAAAAACAAAACACAACCAA.....................................................................................................................................	36	3	4	0.25	1	1	0	0	0	0	0
.................................................................................AAAAAAAAAAAAAAAAACAAAAACAAACAAAAACC.......................................................................................................................................	35	3	4	0.25	1	1	0	0	0	0	0
..................................................................................AAAAAAAAAAAAAAAAAACAAACAAAAATAAACCA......................................................................................................................................	35	3	4	0.25	1	1	0	0	0	0	0
......................................................................................AAAAAAAAAAAAAAAAAAAAACAAAAAATCAAAACA.................................................................................................................................	36	3	4	0.25	1	1	0	0	0	0	0
.................................................................................AAAAAAAAAAAAAAAAAAACAAAAAACAAAACACCA......................................................................................................................................	36	3	4	0.25	1	1	0	0	0	0	0
....................................................................................AAAAAAAAAACAAAACAAAACAACAAAAAACAAAAA...................................................................................................................................	36	3	4	0.25	1	1	0	0	0	0	0
.................................................................................AAAAAAAAAAAAAAAAAAAAAAACAAGAAAAACACA......................................................................................................................................	36	3	4	0.25	1	1	0	0	0	0	0
..................................................................................AAAAAAAAAAAAAAAAAAAAAAAAACACAAAACCCA.....................................................................................................................................	36	3	4	0.25	1	1	0	0	0	0	0
............................................................................AAATCAAAAAAAAAAAAAAAAAAAAAAACAAAAATA...........................................................................................................................................	36	3	4	0.25	1	1	0	0	0	0	0
.................................................................................AAAAAAAAAAAAAAAAAAAAAAACAACAACAACACA......................................................................................................................................	36	3	4	0.25	1	1	0	0	0	0	0
.................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAACACAAAAGCA......................................................................................................................................	36	3	4	0.25	1	1	0	0	0	0	0
.......................................................................................AAAAAAAAAAAAAAAAACAAAAACAAACAAAAACC.................................................................................................................................	35	3	4	0.25	1	1	0	0	0	0	0
....................................................................................AAAAAAAAAAAAAAAAAAAACAAAAAAAAACAAAAA...................................................................................................................................	36	2	20	0.25	5	5	0	0	0	0	0
...................................................................................AAAAAAAAAAAAAAAAAAAAAAAACAAACAACCACA....................................................................................................................................	36	3	4	0.25	1	1	0	0	0	0	0
.................................................................................AAAAAAAAAAAAAAAAAAACAACAAACAAAAAACCA......................................................................................................................................	36	3	4	0.25	1	1	0	0	0	0	0
..................................................................................AAAAAAAAAAAAAAAAAAAACACAACAAAAAACAC......................................................................................................................................	35	3	4	0.25	1	1	0	0	0	0	0
.................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAACATACAACC.......................................................................................................................................	35	3	4	0.25	1	1	0	0	0	0	0
....................................................................................AAAAAAAAAAAAAAAAAAAAAAACAACAAACCACA....................................................................................................................................	35	3	5	0.20	1	1	0	0	0	0	0
..................................................................................AAAAAAAAAAAAAAAAAAAAAAAAACACAAAACCAG.....................................................................................................................................	36	3	5	0.20	1	1	0	0	0	0	0
.................................................................................AAAAAAAAAAAAAAAAAAAAAACAAACAAAACACC.......................................................................................................................................	35	3	5	0.20	1	1	0	0	0	0	0
....................................................................................AAAAAAAAAAAAAAAAAAAAAAACAAAAAACAAAAA...................................................................................................................................	36	2	20	0.20	4	4	0	0	0	0	0
....................................................................................AAAAAAAAAAAAAAAAAAAAAAACAAAAAAGCAAA....................................................................................................................................	35	2	5	0.20	1	1	0	0	0	0	0
...................................................................................AAAAAAAAAAAAAAAAAAAAACAAC...............................................................................................................................................	25	0	5	0.20	1	1	0	0	0	0	0
..................................................................................AAAAAAAAAAAAAAAAAAAAAACAATAAAAAAACCA.....................................................................................................................................	36	3	5	0.20	1	1	0	0	0	0	0
.................................................................................AAAAAAAAAAAAAAAAAAAAAAACAACAAACCACA.......................................................................................................................................	35	3	5	0.20	1	1	0	0	0	0	0
.....................................................................................AAAAAAAAAAAAAAAAAAAAAACAAAAAACGAAAA...................................................................................................................................	35	2	5	0.20	1	1	0	0	0	0	0
....................................................................................AAAAAAAAAAACAAAAAAAACAACAAAAAAACAAC....................................................................................................................................	35	3	5	0.20	1	1	0	0	0	0	0
.................................................................................AAAAAAAAAAAAAAAAAAAAAAAGAACACAAA..........................................................................................................................................	32	2	6	0.17	1	1	0	0	0	0	0
......................................................................................AAAAAAAAAAAAAAAAAAAAACAAAAAAACAAAAC..................................................................................................................................	35	2	6	0.17	1	1	0	0	0	0	0
.................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAACAAAACACAA......................................................................................................................................	36	3	20	0.15	3	3	0	0	0	0	0
....................................................................................AAAAAAAAAAAAAAAAAAACAAACAAAAAACCACA....................................................................................................................................	35	3	7	0.14	1	1	0	0	0	0	0
.......................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAACCAACACC.................................................................................................................................	35	3	7	0.14	1	1	0	0	0	0	0
..................................................................................AAAAAAAAAAAAAAAAAAAAAACAACACAAAAAGA......................................................................................................................................	35	3	7	0.14	1	1	0	0	0	0	0
...............................................................................ACAAAAAAAAAAATAAAAAAAAAAACAACAAAAAAA........................................................................................................................................	36	3	7	0.14	1	1	0	0	0	0	0
................................................................................AAAAAAAAAAAAAAAAAAAAAAAACAACAAAACACA.......................................................................................................................................	36	3	7	0.14	1	1	0	0	0	0	0
..................................................................................AAAAAAAAAAAAAAAAAAAAAAAAACAAACAACGAA.....................................................................................................................................	36	3	8	0.13	1	1	0	0	0	0	0
................................................................................AAAAAAAAAAAAAAAAAAAAAACACAACAAAAAACA.......................................................................................................................................	36	3	8	0.13	1	1	0	0	0	0	0
.............................................................................TATCAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAA..........................................................................................................................................	36	3	8	0.13	1	1	0	0	0	0	0
.................................................................................AAAAAAAAAAAAAAAAAACCAAACAAAAAAAAACC.......................................................................................................................................	35	3	8	0.13	1	1	0	0	0	0	0
....................................................................................AAAAAAAAAAAAAAAAAAAACAAAAAAAAAACAAAA...................................................................................................................................	36	2	18	0.11	2	2	0	0	0	0	0
................................................................................AAAAAAAAAAAAAAAAAAAAACAACAACAAAAACC........................................................................................................................................	35	3	9	0.11	1	1	0	0	0	0	0
...................................................................................AAAAAAAAAAAAAAAAAAAAACAAAAAAAAACAAAA....................................................................................................................................	36	2	19	0.11	2	2	0	0	0	0	0
..............................................................................TGCAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAA.........................................................................................................................................	36	3	10	0.10	1	1	0	0	0	0	0
..............................................................................ATCAAAAAAAAAAAAAAAAAAAA......................................................................................................................................................	23	0	10	0.10	1	0	1	0	0	0	0
......................................................................................AAAAAAAAAAAAAAAAAACAACCAAAAAAAAAAAC..................................................................................................................................	35	3	10	0.10	1	1	0	0	0	0	0
..................................................................................AAAAAAAAAAAAAAAAAAAAAACAAAAAAAAACAA......................................................................................................................................	35	2	20	0.10	2	2	0	0	0	0	0
....................................................................................AAAAAAAAAAAAAAAAAAAAAAACACAAAACAAAAA...................................................................................................................................	36	3	20	0.10	2	2	0	0	0	0	0
.....................................................................................AAAAAAAAAAAAAAAAAAACAAAAAAAAAACAAAA...................................................................................................................................	35	2	20	0.10	2	2	0	0	0	0	0
..................................................................................AAAAAAAAAAAAAAAAAAAAAACAAAAAAAACACAA.....................................................................................................................................	36	3	20	0.10	2	2	0	0	0	0	0
...................................................................................AAAAAAAAAAAAAAAAAAAAACAACAAACAAAGAAA....................................................................................................................................	36	3	10	0.10	1	1	0	0	0	0	0
..............................................................................ACCAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAA.........................................................................................................................................	36	2	10	0.10	1	1	0	0	0	0	0
...................................................................................AAAAAAAAAAAAAAAAAAAAAAAACAACCAACC.......................................................................................................................................	33	3	12	0.08	1	1	0	0	0	0	0
...............................................................................TCAAAAAAAAAAAAAAAAAAAAAAA...................................................................................................................................................	25	0	12	0.08	1	0	0	0	1	0	0
..............................................................................ATCAAAAAAACACAAAAAAAAATAAAC..................................................................................................................................................	27	3	12	0.08	1	0	0	1	0	0	0
................................................................................CAAAAAAAAAAAAAAAAAAAAAAAAAACAAAACACA.......................................................................................................................................	36	3	12	0.08	1	1	0	0	0	0	0
............................................................................TATTCAAAAGTAAAAAAAAAAAAAAAAA...................................................................................................................................................	28	3	13	0.08	1	0	0	0	0	0	1
....................................................................CTGAGTGTTAATAAAAAAAAAAAA...............................................................................................................................................................	24	3	13	0.08	1	0	1	0	0	0	0
...............................................................................TCAGAAAAAAAAAAAAAAAAAAAAA...................................................................................................................................................	25	1	17	0.06	1	0	0	0	1	0	0
...............................................................................TCAAAAAAAAAAAAAAAAAAAAAA....................................................................................................................................................	24	0	19	0.05	1	0	0	0	0	0	1
...................................................................................AAAAAAAAAAAAAAAAAAAAACAGAAAAAAAACAAA....................................................................................................................................	36	3	19	0.05	1	1	0	0	0	0	0
.............................................................................AAACAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAA..........................................................................................................................................	36	2	19	0.05	1	1	0	0	0	0	0
...................................................................................AAAAAAAAAAAAAAAAAAAAACATAAAAAAAACAAA....................................................................................................................................	36	3	19	0.05	1	1	0	0	0	0	0
..................................................................................AAAAAAAAGAAAAAAAAAAAAACAAAAAAAAAACAA.....................................................................................................................................	36	3	19	0.05	1	1	0	0	0	0	0
..................................................................................AAAAAAAAAAAAAAAAAA.......................................................................................................................................................	18	0	20	0.05	1	0	0	0	0	1	0
....................................................................................AAAAAAAAAAAAAAAAAAACAAACAAAAAAACAAAA...................................................................................................................................	36	3	20	0.05	1	1	0	0	0	0	0
...............................................................................TCAAAAAAAAAAAAAAAAAAAAA.....................................................................................................................................................	23	0	20	0.05	1	0	1	0	0	0	0
..................................................................................AAAAAAAAAAAAAACAAAAAAACAAAAAAAAACAAA.....................................................................................................................................	36	3	20	0.05	1	1	0	0	0	0	0
....................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAACAAACCAAAA...................................................................................................................................	36	3	20	0.05	1	1	0	0	0	0	0
....................................................................................AAAAAAAAAAACAAAAAAAACAAAAAAAAACAAAAA...................................................................................................................................	36	3	20	0.05	1	1	0	0	0	0	0
.................................................................................AAAAAAAAAAAAAAAAAAAAAAAGAATAAAAAACAA......................................................................................................................................	36	3	20	0.05	1	1	0	0	0	0	0
.................................................................................AAAAAAAAAAAAAAAAAAAAAAAC..................................................................................................................................................	24	0	20	0.05	1	0	1	0	0	0	0
.......................................................................................AAAAAAAAAAAAAAAAACA.................................................................................................................................................	19	0	20	0.05	1	1	0	0	0	0	0
.................................................................................AAACAAAAAAAAAAAAAAAAAAACAAAAAAAAACAA......................................................................................................................................	36	3	20	0.05	1	1	0	0	0	0	0
...................................................................................AAAAAAAAAAAAAAAAAAAGAAAAAAAAAAACCAAA....................................................................................................................................	36	3	20	0.05	1	1	0	0	0	0	0
....................................................................................AAAAAAAAAAAAAAAAAAAACACAAAAAAAACAAAA...................................................................................................................................	36	3	20	0.05	1	1	0	0	0	0	0
.............................................................................................AAAAAAAAAAACAACAAAA...........................................................................................................................................	19	0	20	0.05	1	0	1	0	0	0	0
....................................................................................AAACAAAAAAAAAAAAAAAACAAAAAAAAAACAAAA...................................................................................................................................	36	3	20	0.05	1	1	0	0	0	0	0
.................................................................................AAAAAAAAAACAAAAAAAAAAAACAAAAAAAAACAA......................................................................................................................................	36	3	20	0.05	1	1	0	0	0	0	0
.................................................................................AAAAAAAAAAAAAAAAAAAAAACCAAAAAAAAACAA......................................................................................................................................	36	3	20	0.05	1	1	0	0	0	0	0
...................................................................................AAAAAAAAAAAAAAAAAAAACCAAAAAAAAACAAAA....................................................................................................................................	36	3	20	0.05	1	1	0	0	0	0	0
................................................................................CAAAAAAAAAAAAAAAAAAAAA.....................................................................................................................................................	22	0	20	0.05	1	0	0	0	0	1	0
........................................................................................AAAAAAAAAAAAAAAACAACAAAAAAACAAAAAAAA...............................................................................................................................	36	3	20	0.05	1	1	0	0	0	0	0
..................................................................................AAAAAAAAAAAAAAAAAAAAAACAAAAATAAAACAA.....................................................................................................................................	36	3	20	0.05	1	1	0	0	0	0	0
...........................................................................TTAGTGAAAAAAAAAAAAAAAAAAA.......................................................................................................................................................	25	2	20	0.05	1	0	0	0	1	0	0
.................................ATATTGGTCAACGGCAGGT.......................................................................................................................................................................................................	19	3	20	0.05	1	0	1	0	0	0	0

TACTTCGCAGTCGGCTCTCTAGGCATAGCGCTGTTGAACCAGTTGGCGTCCAGTCCTGTTTGAATTGCGATTCAAAATTAGTTTTTTTTTTTTTTTTTTTTTTTGTTGTTTTTTGGTTTTGGTTAGTTATAGGTTCACAATTTGTAGGTTAGAAAATCAACTAATCAATTCTTTGATGATCTTTTACTTGTTTGTACGTTGGTAGAAAAATGAAATTTGCTAAACTTTAAACAAACTACACAACACCAGCA ****************************************************************************************************************************************************..((.(((((((....)))))))...))....................***************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M062 head	M040 female body	V112 male body	M059 embryo	GSM343916 embryo	SRR902010 ovaries	SRR902011 testis
..................................................................................TTTTTTTTTTTTTTTTTTTT.....................................................................................................................................................	20	0	20	1.15	23	23	0	0	0	0	0	0
.......................................................................................................................................TACAATTTGTAGGTTAGTAAA...............................................................................................	21	2	1	1.00	1	0	0	1	0	0	0	0
......................................................................................TTTTTTTTTTTTTTTTTTGT.................................................................................................................................................	20	0	20	0.45	9	0	0	0	9	0	0	0
.................................................................................TTTTTTTTTTTTTTTTTTTTTTT...................................................................................................................................................	23	0	20	0.40	8	0	8	0	0	0	0	0
.....................................................................................TTTTTTTTTTTTTTTTTTTGT.................................................................................................................................................	21	0	20	0.35	7	0	0	0	7	0	0	0
......................................................................................TTTTTTTTTTTTTTTTTTGTTTTTTTTTGTTTTTGG.................................................................................................................................	36	2	3	0.33	1	0	0	0	0	1	0	0
................................................................................................................................................................................................TGAACTTTGGTAGAAAAAT........................................	19	2	3	0.33	1	0	1	0	0	0	0	0
.................................................................................TTTTTTTTTTTTTTTTTTTTTT....................................................................................................................................................	22	0	20	0.30	6	6	0	0	0	0	0	0
.....................................................................................TTTTTTTTTTTTTTTTTTTG..................................................................................................................................................	20	0	20	0.20	4	0	4	0	0	0	0	0
...................................................................................TTTTTTTTTTTTTTTTTTTTTTTTGTTTTTTGGGTG....................................................................................................................................	36	3	5	0.20	1	0	0	0	0	1	0	0
..............................................................................TAGTTTTTTTTTTTT..............................................................................................................................................................	15	0	20	0.20	4	0	0	0	0	0	4	0
....................................................................................TTTTTTTTTTTTTTTTTTTTGT.................................................................................................................................................	22	0	20	0.15	3	0	0	0	3	0	0	0
...............................................................................................................................................................................................TTGTACGGTGGTAGAAAAAAA.......................................	21	3	9	0.11	1	0	1	0	0	0	0	0
...................................................................................TTTTTTTTTTTTTTTTTTTTTCTAGTCTTTT.........................................................................................................................................	31	3	15	0.07	1	0	0	0	0	0	0	1
................................................GCCAGTCCTGTCTGAATAG........................................................................................................................................................................................	19	3	16	0.06	1	0	1	0	0	0	0	0
...................................................................................TTTTTTTTTTTTTTTTTTTTTGTT................................................................................................................................................	24	0	19	0.05	1	0	1	0	0	0	0	0
....................................................................................TTTTTTTTTTTTTTTTTTTTG..................................................................................................................................................	21	0	20	0.05	1	0	1	0	0	0	0	0
....................................................................................................................................................................................................CCTTGGTGGAAGAATGAAA....................................	19	3	20	0.05	1	0	0	1	0	0	0	0

Species	Coordinate	ID	Alignment
dp5	2:12640039-12640289 -	dps_494	ATGAAGCGTCAGCCGAGAGATCCGTATCGCGACAACTTGGTCAACCGCAGGTCAGGACAAACTT--AACGCTAAGTTTTAATCAAAA-----A-AAA--AAAAAAAA------AAAAAAACAAC------AAAAAACCAA--AACCAAT------------------CAA-TATCCA--AG---TGTTAA-ACATCCAATCTTTTAGTTGATTAGTTAAG--AA-ACTACT-AGA-AAATGAA-C-AAACATGCAACCATCT------TT--TTACTTTA-------AA-------------CGATTTGAAATTTGTTTGATGTGTTGTG--------GTCGT
droPer2	scaffold_0:7819487-7819712 +		ATGAAGCGTCAGCCGAGAGATCCGTATCGCGACAACTTGGTCAACCGCAGGTCAGGACAAACTT--AACGCTAAGTTTTAATCAAAA------------AAAACAAA------AACCA------------------------AA-----------------------CAA-TATCCA--AG---TGTTAA-ACATCCAATCTTTTAGTTGATTAGTTAAG--AA-ACTACT-AGA-AAATGAA-C-AAACATGCAACCATCT------TT--TTACTTTA-------AA-------------CGATTTGAAATTTGTTTGATGTGTTGTG--------GTCGT
droWil2	scf2_1100000004902:6122004-6122227 +		ATGAAACGTCAACCGAGAGATCCATATCGTGACAACTTGGTCAACCGCAGGTCAGGACAAATTT--AACAATAAGGA------AAAA----AA-CAA--AAAACAAA------AAC--------------C-------AA--AAATACCCATTTTACTTGTGTATTTC------------------TTTA-A-------TGTTTTAGTTGATTAGTTAAG--AA-ACT----AGA-AAATGAA-C-AAACATGCAACCCATT--TCCTC---TTATTTT--------TCAATTATC------G-ATTTGACCTTTTTTTT--------TT--------G---T
droVir3	scaffold_12855:2286984-2287221 +		ATGAAGCGTCAACCGAGAGATCCATACCGTGACAACTTGGTCAACCGCAGGTCAGGACAAATCTATTACGATAAGGA----TAAAAA-----C-AA---AAAAGAAA------AAC--------------A-------AA--AAATA--------------------AAA-CATTTA--AGAATTGTTTA----------CTTTTAGTTGTTTAGTTATA--AAAACT----AGA-AAATGAA-C-AAACATGCAACCATTT------CT--TTA-TTTC-------CCATT-TACAATTTGACATTCGACCTTTGTTTGA---GTTGTGTGTGTTTTG-TGT
droMoj3	scaffold_6540:32594957-32595201 +		ATGAAGCGTCAGCCGAGAGATCCATACCGCGACAACTTGGTAAACCGCAGGTCAGGACAAATCATTAACGATAAGGAATT-TAAAAA-----C-CAA--AATACAAA--AAA-TAC--------CAAAACA-------AA--AAATT-------------------TC------TTA--AGAA-TATT---ACG--------TTTAGTTGTTTAGTT--GAACA-AATTTT-AGATAAATGAAACAAAACATGCAACCCCCATTTCTTC---TTT-TTTAACATGTTTC------AAATTTGACATTTGACCTTTGTTTGA---GTTGTG-------------
droGri2	scaffold_15074:2287549-2287765 +		ATGAAGCGTCAGCCGAGAGATCCGTACCGCGACAACTTGGTAAACCGCAGGTCAGGACAAATCTATTACGATAAGGAT--ATAAAAA-----TACAA--AAAAAAAA------A----------------------------AA------------------------------CTA--AGAATTGTTTA----------CTTTTAGTTGTTTAGTTACA--A--AATACT-AGA-AAATGAA-C-AAACATGCAACCACAT------C---TTATTTTA-------AATTT-TCC------A-ATTTGACTTTGGTTTGAGTTG-TGTG--------TGTGT
droAna3	scaffold_13340:8053993-8054226 +		ATGAAGCGTCAGCCGAGAGATCCGTATCGCGACAACTTGGTGAACCGCAGGTCAGGACAAACTT--AACGCTAAGGTTTTATATAAAAAAAAA-AAA--AAAACAAA----AAAAC--------------A-------AA--AAATA--------------------CAATTATCCAAAAG---TGTTAA-ACAT----TGTTTTAGTTGATTAGTTAAG--A--ACT----AGA-AAATGAA-C-AAACATGCAACCATCT------TT-TTTACTTTA-------CC-------------AACTTTGAAGTTTGTTTGATGTGTTGTG--------G---T
droBip1	scf7180000396708:793332-793544 -		ATGAAGCGTCAGCCGAGAGATCCGTATCGCGACAACTTGGTGAACCGCAGGTCAGGACAAACTT--AACGCTAAGGTTTTATAATAA-----A-AAA--AAAAAAAA------A----------------------------AAATAA-------------------CAATTATCCAA-AG---TGTTATACAT-----TCTTTTAGTTGATTAGTTAAG--A--ACTAGTAAGA-AAATGAA-C-AAACATGCAACCATCT------TT--TTACTTTA-------CC-------------AAC-------TTTGTTTGATG-----TG--------G---T
droKik1	scf7180000302809:57848-58069 +		ATGAAGCGTCAGCCGAGAGATCCGTATCGCGACAACTTGGTGAACCGCAGGTCAGGAAAAACTT--AAAAATAAGGCTTTACAAAAA-----A-AAA--AAAACAAA------AA--A------------------------AAATC--------------------CAA-TATCCA--AG---TGTTAA-CCA-----TCTTTTAGTTGATTAGTTGAG--A--ACT----AGA-AAATGAA-C-AAACATGCAACCATCT------T---TTACTTTT-------G-----TCA------AATTTTGAACTTTGTTTGATGTGTTGTG--------GTCG-
droFic1	scf7180000454096:57931-58172 +		ATGAAGCGTCAGCCGAGAGATCCGTATCGCGACAACTTGGTGAACCGCAGGTCAGGACAAACTT--AACGCTAAGGTTATATAAAAA-----C-AAAACAAACCAAA------AA---AAAAAGAAAAACAAAAAATCA---AACTC--------------------CAA-TATCCA--AG---TGTTAA-CCG-----TCTTTTAGTTGATTAGTTAAG--A--ACT----AGA-AAATGAA-C-AAACATGCAACCATCT------CT-CTTACTTTA-------CC-------------GACTTTGAACTTTGTTTGATGTGTTGTG--------G---T
droEle1	scf7180000491080:674737-674962 +		ATGAAGCGTCAGCCGAGAGATCCGTATCGCGACAACTTGGTGAACCGCAGGTCAGGACAAACTT--AACGCTAAGGTTTAATAACAA-----A-CAA--A--ACAAAAAAAA-AAC--------------C-------AA-AAACTC--------------------CAA-AATCCA--AG---TGTTTA-CCG-----TCTTTTAGTTGATTAGTTAAG--A--ACT----AGA-AAATGAA-C-AAACATGCAACCATCT------T---TTACTTTA-------CC-------------AACTTTGATCTTTGTTTGATGTGTTGTG--------C--AT
droRho1	scf7180000779659:385063-385265 +		ATGAAGCGTCAGCCGAGAGATCCGTATCGCGACAACTTGGTGAACCGCAGGTCAGGACAAACTT--AACGCTAAGGCTTAA-------------------------A------AAAAA------------------------AACTC--------------------CAT-TATCCA--AG---TGTTAA-CCG-----TCTTTTAGTTGATTAGTTAAG--G--ACT----AGA-AAATGAA-C-AAACATGCAACCATCT------T---TCACTTTA-------CC-------------AACTTTGATTTTTGTTTGATGTGTTGTG--------G---T
droBia1	scf7180000302155:143081-143310 +		ATGAAGCGTCAGCCGAGAGATCCGTATCGCGACAACTTGGTGAACCGCAGGTCAGGA-AAACTT--AACGCTAAGGTTTTATAAAAA-----T-CAA--AAAACAAA------AA---ACCAACAAAAACC-------AA--AAATC--------------------CAA-TATCCA--AG---TGTTAA-CCG-----TCT-TTAGTTGATTAGTTAAG--A--ACT----AGA-AAATGAA-C-AAACATGCAACCATCT------T---TTACTTTT-------CG-------------AACTTTGAACTTTGTTTGATGTGTTGTG--------G---T
droTak1	scf7180000415750:467381-467614 -		ATGAAGCGTCAGCCGAGAGATCCGTATCGCGACAACTTGGTGAACCGCAGGTCAGGA-AAACTT--AACGCTAAGGTTTTATAACAA-----A-AAA--AAAACAAA------AACCA--AAACAAAAACA-------AAAAAACTC--------------------CAA-TATCCA--AG---TGTTAA-CCG-----TCTTTTAGTTGATTAGTTAAG--A--ACT----AGA-AAATGAA-C-AAACATGCAACCATCT------T---TTACTTTA-------CC-------------AACTTTGAACTTTGTTTGATGTGTTGTG--------G---T
droEug1	scf7180000409542:350487-350703 -		ATGAAGCGTCAGCCGAGAGATCCGTATCGCGACAACTTGGTCAACCGCAGGTCAGGAAAAACTT--AAAGCTAAGGTTTTATAAAAC--------AA--A--AG-------------A------------------------AAATC--------------------CAA-TATCCA--AG---TGTTAA-TCG-----TCTTTTAGTTGATTAGTTAAG--AA-ACT----AGA-AAATGAA-C-AAACATGCAACCATCT------T---TTAGTTTA-------CC------AACTTTGAACTTTGAACTTTGTTTGATGTGTTGTG--------G---T
dm3	chr3R:16796650-16796873 +		ATGAAGCGTCAGCCGAGAGATCCGTATCGCGACAACTTGGTGAACCGCAGGTCAGGA-AAACTA--AACGCTAAGGTCTTATAAAAA-----A-AAAAAAAACCAAA------AACCA------------------------AACTC--------------------CAA-TATCCA--AG---TGTTAA-CCG-----TCTTTTAGTTGATTAGTTATG--G--AAT----AGA-AAATGAA-C-AAACATGCAACCATCA------TTATTTACGTTA-------CC-------------AACTTTGAACTTTGTTTGATGTTCTGTG--------G---T
droSim2	3r:4507051-4507269 -		ATGAAGCGTCAGCCGAGAGATCCGTATCGCGACAACTTGGTGAACCGCAGGTCAGGA-AAACTT--AACGCTAAGGCCTTATAAAAA-----A-AGA--AAACCAAA------AACAA------------------------AACTC--------------------CAA-TATCCA--AG---TGTTAA-CCG-----TCTTTTAGTTGATTAGTTACG--A--AAT----AGA-AAATGAA-C-AAACATGCAACCATCT------T---TTACGTTA-------CC-------------AACTTTGAACTTTGTTTGATGTGCTGTG--------G---T
droSec2	scaffold_38:329053-329271 -		ATGAAGCGTCAGCCGAGAGATCCGTATCGCGACAACTTGGTGAACCGCAGGTCAGGA-AAACTT--AACGCTAAGGTCTTATAAAAA-----A-AAA--AAAACAAA------AACAA------------------------AACTC--------------------CAA-TATCCA--AG---TGTTAA-CCG-----TCTTTTAGTTGATTAGTTACG--A--AAT----AGA-AAATGAA-C-AAACATGCAACCATCT------T---TTACGTTA-------CC-------------AACTTTGAACTTTGTTTGATGTGCTGTG--------G---T
droYak3	3R:5587476-5587682 +		ATGAAGCGTCAGCCGAGAGATCCGTATCGCGACAACTTGGTGAACCGCAGGTCAGGA-AAACTT--AACGCTAAGGTCTTACAAAAA--------------------------AACAA------------------------AACTC--------------------CAA-TATCCA--AG---TGTTAA-CCG-----TCTTTTAGTTGATTAGTTATG--A--AAT----AGA-AAATGAA-C-AAACATGCAACCATAT------T---TTACGTTA-------CC-------------AACTTTGAACTTTGATTGATGTGCTGTG--------G---T
droEre2	scaffold_4770:4860134-4860351 -		ATGAAGCGTCAGCCGAGAGATCCGTATCGCGACAACTTGGTGAACCGCAGGTCAGGA-AAACTT--AACGCTAAGGTCTTATACAAA-----A-AA---AAACCAAA------AACAA------------------------AATTC--------------------CAA-TATCCA--AG---TGTTAA-CCG-----TCTTTTAGTTGATTAGTTATG--A--AAT----AGA-AAATGAA-C-AAACATGCAAGCATTT------T---TTACGTTA-------CC-------------AACTTTGAACTTTGTTTGATGTACTGTG--------G---T

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

dp5

ATGAAGCGTCAGCCGAGAGATCCGTATCGCGACAACTTGGTCAACCGCAGGTCAGGACAAACTT--AACGCTAAGTTTTAATCAAAA-----A-AAA--AAAAAAAA------AAAAAAACAAC------AAAAAACCAA--AACCAAT------------------CAA-TATCCA--AG---TGTTAA-ACATCCAATCTTTTAGTTGATTAGTTAAG--AA-ACTACT-AGA-AAATGAA-C-AAACATGCAACCATCT------TT--TTACTTTA-------AA-------------CGATTTGAAATTTGTTTGATGTGTTGTG--------GTCGT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
....................................................................................AAA-----A-AAA--AAAAAAAA------AAAA..................................................................................................................................................................................................................................	19	20	13.55	271	0	271	0	0	0	0	0	0	0	0
.....................................................AGGACAAACTT--AACGCTAAGTT..........................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..............................................................................TAATCAAAA-----A-AAA--AAAAAAAA------AAAAA.................................................................................................................................................................................................................................	26	2	1.00	2	0	0	0	0	0	0	0	0	2	0
...............................................................................................................................................................................................................TTGATTAGTTAAG--AA-ACTA..................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.....GCGTCAGCCGAGAGATCCGTATCGCGAC......................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0
......................................................................................A-----A-AAA--AAAAAAAA------AAAAAAACAAC------AAAAAACCCC--C........................................................................................................................................................................................................	35	2	0.50	1	0	0	0	0	1	0	0	0	0	0
.....................................................................................AA-----A-AAA--AAAAAAAA------AAAAAAACAAC------.....................................................................................................................................................................................................................	25	5	0.20	1	0	0	0	0	1	0	0	0	0	0
................................................................................ATCAAAA-----A-AAA--AAAAAAAA------AAAA..................................................................................................................................................................................................................................	23	10	0.10	1	0	1	0	0	0	0	0	0	0	0
.................................................................................TCAAAA-----A-AAA--AAAAAAAA------AAAAAAA...............................................................................................................................................................................................................................	25	12	0.08	1	0	0	0	0	0	0	0	0	1	0
.................................................................................TCAAAA-----A-AAA--AAAAAAAA------AAAAAA................................................................................................................................................................................................................................	24	19	0.05	1	0	0	0	0	0	0	0	1	0	0
....................................................................................AAA-----A-AAA--AAAAAAAA------AAA...................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	1	0	0	0	0	0	0
.................................................................................TCAAAA-----A-AAA--AAAAAAAA------AAAAA.................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...................................................................................AAAA-----A-AAA--AAAAAAAA------AAAAAAAC..............................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................AA--AAAAAAAA------AAAAAAACA.............................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	1	0	0	0	0	0
.......................................................................................................AAAA------AAAAAAACAAC------AAAA.................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..................................................................................CAAAA-----A-AAA--AAAAAAAA------AAAAA.................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	1	0	0	0	0	0	0

droPer2

ATGAAGCGTCAGCCGAGAGATCCGTATCGCGACAACTTGGTCAACCGCAGGTCAGGACAAACTT--AACGCTAAGTTTTAATCAAAA------------AAAACAAA------AACCA------------------------AA-----------------------CAA-TATCCA--AG---TGTTAA-ACATCCAATCTTTTAGTTGATTAGTTAAG--AA-ACTACT-AGA-AAATGAA-C-AAACATGCAACCATCT------TT--TTACTTTA-------AA-------------CGATTTGAAATTTGTTTGATGTGTTGTG--------GTCGT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...........................................................................................................................................................................................................................................................................................................................GTTTGATGTGTTGTG--------GTCGT	20	1	1.00	1	0	0	0	0	0	1
..................................................................................................................................................................................................................................CTACT-AGA-AAATGAA-C-AAACATGCAAC......................................................................................	27	1	1.00	1	0	1	0	0	0	0

droWil2

ATGAAACGTCAACCGAGAGATCCATATCGTGACAACTTGGTCAACCGCAGGTCAGGACAAATTT--AACAATAAGGA------AAAA----AA-CAA--AAAACAAA------AAC--------------C-------AA--AAATACCCATTTTACTTGTGTATTTC------------------TTTA-A-------TGTTTTAGTTGATTAGTTAAG--AA-ACT----AGA-AAATGAA-C-AAACATGCAACCCATT--TCCTC---TTATTTT--------TCAATTATC------G-ATTTGACCTTTTTTTT--------TT--------G---T	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..........................................................................................................................................................................................................TTTAGTTGATTAGTTAAG--AA-A.....................................................................................................................	21	1	2.00	2	0	0	1	1	0
...............AGAGATCCATATCGTGAC......................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0

droVir3

ATGAAGCGTCAACCGAGAGATCCATACCGTGACAACTTGGTCAACCGCAGGTCAGGACAAATCTATTACGATAAGGA----TAAAAA-----C-AA---AAAAGAAA------AAC--------------A-------AA--AAATA--------------------AAA-CATTTA--AGAATTGTTTA----------CTTTTAGTTGTTTAGTTATA--AAAACT----AGA-AAATGAA-C-AAACATGCAACCATTT------CT--TTA-TTTC-------CCATT-TACAATTTGACATTCGACCTTTGTTTGA---GTTGTGTGTGTTTTG-TGT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
................................................................................................................................................................................................................................AACT----AGA-AAATGAA-C-AAACATG..........................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................CCTTTGTTTGA---GTTGTGTGTGT........	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................C--------------A-------AA--AAATA--------------------AAA-CATTTA--AGAATTGTT...........................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................TTGTTTAGTTATA--AAAACT----A..............................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
ATGAAGCGTCAACCGAGAGATCCAT..............................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0

droMoj3

ATGAAGCGTCAGCCGAGAGATCCATACCGCGACAACTTGGTAAACCGCAGGTCAGGACAAATCATTAACGATAAGGAATT-TAAAAA-----C-CAA--AATACAAA--AAA-TAC--------CAAAACA-------AA--AAATT-------------------TC------TTA--AGAA-TATT---ACG--------TTTAGTTGTTTAGTT--GAACA-AATTTT-AGATAAATGAAACAAAACATGCAACCCCCATTTCTTC---TTT-TTTAACATGTTTC------AAATTTGACATTTGACCTTTGTTTGA---GTTGTG-------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

ATGAAGCGTCAGCCGAGAGATCCGTACCGCGACAACTTGGTAAACCGCAGGTCAGGACAAATCTATTACGATAAGGAT--ATAAAAA-----TACAA--AAAAAAAA------A----------------------------AA------------------------------CTA--AGAATTGTTTA----------CTTTTAGTTGTTTAGTTACA--A--AATACT-AGA-AAATGAA-C-AAACATGCAACCACAT------C---TTATTTTA-------AATTT-TCC------A-ATTTGACTTTGGTTTGAGTTG-TGTG--------TGTGT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droAna3

ATGAAGCGTCAGCCGAGAGATCCGTATCGCGACAACTTGGTGAACCGCAGGTCAGGACAAACTT--AACGCTAAGGTTTTATATAAAAAAAAA-AAA--AAAACAAA----AAAAC--------------A-------AA--AAATA--------------------CAATTATCCAAAAG---TGTTAA-ACAT----TGTTTTAGTTGATTAGTTAAG--A--ACT----AGA-AAATGAA-C-AAACATGCAACCATCT------TT-TTTACTTTA-------CC-------------AACTTTGAAGTTTGTTTGATGTGTTGTG--------G---T	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.......................GTATCGCGACAACTTGGTGAACC.........................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................ATCCAAAAG---TGTTAA-ACAT----TGT.............................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
.................................................GGTCAGGACAAACTT--AACGCTAAGGTT.........................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................ACATGCAACCATCT------TT-TTTA....................................................................	20	1	1.00	1	0	1	0	0	0	0
........................................................................................AAAAA-AAA--AAAACAAA----AAAAC--------------.....................................................................................................................................................................................................................	21	20	0.20	4	0	4	0	0	0	0
......................................................................................AAAAAAA-AAA--AAAACAAA----AAAAC--------------A-------.............................................................................................................................................................................................................	24	7	0.14	1	0	1	0	0	0	0
.......................................................................................AAAAAA-AAA--AAAACAAA----AAAAC--------------.....................................................................................................................................................................................................................	22	20	0.10	2	0	1	1	0	0	0
...............................................................................................AA--AAAACAAA----AAAAC--------------A-------AA--AA.......................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
.........................................................................................AAAA-AAA--AAAACAAA----AAAAC--------------A-------.............................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
.........................................................................................AAAA-AAA--AAAACAAA----AAAAC--------------A-------A............................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0
.......................................................................................AAAAAA-AAA--AAAACAAA----AAA.....................................................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
.......................................................................................AAAAAA-AAA--AAAACAAA----AAAAC--------------C-------.............................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
...................................................................................................AAAACAAA----AAAAC--------------A-------AA--AAATC--------------------................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
...............................................................................................AA--AAAACAAA----AAAAC--------------A-------AA--A........................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0
.....................................................................................AAAAAAAA-AAA--AAAACAAA----AAAA....................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
..........................................................................................AAA-AAA--AAAACAAA----AAAAC--------------A-------.............................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
..............................................................................................AAA--AAAACAAA----AAAAC--------------A-------AA--A........................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0

droBip1

ATGAAGCGTCAGCCGAGAGATCCGTATCGCGACAACTTGGTGAACCGCAGGTCAGGACAAACTT--AACGCTAAGGTTTTATAATAA-----A-AAA--AAAAAAAA------A----------------------------AAATAA-------------------CAATTATCCAA-AG---TGTTATACAT-----TCTTTTAGTTGATTAGTTAAG--A--ACTAGTAAGA-AAATGAA-C-AAACATGCAACCATCT------TT--TTACTTTA-------CC-------------AAC-------TTTGTTTGATG-----TG--------G---T	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ATGAAGCGTCAGCCGAGAGATCCGTATCGCGACAACTTGGTGAACCGCAGGTCAGGAAAAACTT--AAAAATAAGGCTTTACAAAAA-----A-AAA--AAAACAAA------AA--A------------------------AAATC--------------------CAA-TATCCA--AG---TGTTAA-CCA-----TCTTTTAGTTGATTAGTTGAG--A--ACT----AGA-AAATGAA-C-AAACATGCAACCATCT------T---TTACTTTT-------G-----TCA------AATTTTGAACTTTGTTTGATGTGTTGTG--------GTCG-	Size	Hit Count	Total Norm	Total
No Reads

droFic1

ATGAAGCGTCAGCCGAGAGATCCGTATCGCGACAACTTGGTGAACCGCAGGTCAGGACAAACTT--AACGCTAAGGTTATATAAAAA-----C-AAAACAAACCAAA------AA---AAAAAGAAAAACAAAAAATCA---AACTC--------------------CAA-TATCCA--AG---TGTTAA-CCG-----TCTTTTAGTTGATTAGTTAAG--A--ACT----AGA-AAATGAA-C-AAACATGCAACCATCT------CT-CTTACTTTA-------CC-------------GACTTTGAACTTTGTTTGATGTGTTGTG--------G---T	Size	Hit Count	Total Norm	Total
No Reads

droEle1

ATGAAGCGTCAGCCGAGAGATCCGTATCGCGACAACTTGGTGAACCGCAGGTCAGGACAAACTT--AACGCTAAGGTTTAATAACAA-----A-CAA--A--ACAAAAAAAA-AAC--------------C-------AA-AAACTC--------------------CAA-AATCCA--AG---TGTTTA-CCG-----TCTTTTAGTTGATTAGTTAAG--A--ACT----AGA-AAATGAA-C-AAACATGCAACCATCT------T---TTACTTTA-------CC-------------AACTTTGATCTTTGTTTGATGTGTTGTG--------C--AT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ATGAAGCGTCAGCCGAGAGATCCGTATCGCGACAACTTGGTGAACCGCAGGTCAGGACAAACTT--AACGCTAAGGCTTAA-------------------------A------AAAAA------------------------AACTC--------------------CAT-TATCCA--AG---TGTTAA-CCG-----TCTTTTAGTTGATTAGTTAAG--G--ACT----AGA-AAATGAA-C-AAACATGCAACCATCT------T---TCACTTTA-------CC-------------AACTTTGATTTTTGTTTGATGTGTTGTG--------G---T	Size	Hit Count	Total Norm	Total
No Reads

droBia1

ATGAAGCGTCAGCCGAGAGATCCGTATCGCGACAACTTGGTGAACCGCAGGTCAGGA-AAACTT--AACGCTAAGGTTTTATAAAAA-----T-CAA--AAAACAAA------AA---ACCAACAAAAACC-------AA--AAATC--------------------CAA-TATCCA--AG---TGTTAA-CCG-----TCT-TTAGTTGATTAGTTAAG--A--ACT----AGA-AAATGAA-C-AAACATGCAACCATCT------T---TTACTTTT-------CG-------------AACTTTGAACTTTGTTTGATGTGTTGTG--------G---T	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ATGAAGCGTCAGCCGAGAGATCCGTATCGCGACAACTTGGTGAACCGCAGGTCAGGA-AAACTT--AACGCTAAGGTTTTATAACAA-----A-AAA--AAAACAAA------AACCA--AAACAAAAACA-------AAAAAACTC--------------------CAA-TATCCA--AG---TGTTAA-CCG-----TCTTTTAGTTGATTAGTTAAG--A--ACT----AGA-AAATGAA-C-AAACATGCAACCATCT------T---TTACTTTA-------CC-------------AACTTTGAACTTTGTTTGATGTGTTGTG--------G---T	Size	Hit Count	Total Norm	Total
No Reads

droEug1

ATGAAGCGTCAGCCGAGAGATCCGTATCGCGACAACTTGGTCAACCGCAGGTCAGGAAAAACTT--AAAGCTAAGGTTTTATAAAAC--------AA--A--AG-------------A------------------------AAATC--------------------CAA-TATCCA--AG---TGTTAA-TCG-----TCTTTTAGTTGATTAGTTAAG--AA-ACT----AGA-AAATGAA-C-AAACATGCAACCATCT------T---TTAGTTTA-------CC------AACTTTGAACTTTGAACTTTGTTTGATGTGTTGTG--------G---T	Size	Hit Count	Total Norm	Total
No Reads

dm3

ATGAAGCGTCAGCCGAGAGATCCGTATCGCGACAACTTGGTGAACCGCAGGTCAGGA-AAACTA--AACGCTAAGGTCTTATAAAAA-----A-AAAAAAAACCAAA------AACCA------------------------AACTC--------------------CAA-TATCCA--AG---TGTTAA-CCG-----TCTTTTAGTTGATTAGTTATG--G--AAT----AGA-AAATGAA-C-AAACATGCAACCATCA------TTATTTACGTTA-------CC-------------AACTTTGAACTTTGTTTGATGTTCTGTG--------G---T	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..........................TCGCGACAACTTGGTGAACCGCAGG....................................................................................................................................................................................................................................................................................................	25	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..........................................................................GGTCTTATAAAAA-----A-AAAA.....................................................................................................................................................................................................................................................	18	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................GACAACTTGGTGAACCGCAGGTCA.................................................................................................................................................................................................................................................................................................	24	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................TGCAACCATCA------TTATTTACGTTA-------CC-------------AAC......................................	28	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..................................................................................AAAAA-----A-AAAAAAAACCAAA------AA....................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................A-AAAAAAAACCAAA------AACCA------------------------C........................................................................................................................................................................................................	20	13	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................AAA-----A-AAAAAAAACCAAA------AAC...................................................................................................................................................................................................................................	20	15	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

ATGAAGCGTCAGCCGAGAGATCCGTATCGCGACAACTTGGTGAACCGCAGGTCAGGA-AAACTT--AACGCTAAGGCCTTATAAAAA-----A-AGA--AAACCAAA------AACAA------------------------AACTC--------------------CAA-TATCCA--AG---TGTTAA-CCG-----TCTTTTAGTTGATTAGTTACG--A--AAT----AGA-AAATGAA-C-AAACATGCAACCATCT------T---TTACGTTA-------CC-------------AACTTTGAACTTTGTTTGATGTGCTGTG--------G---T	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..................................................................................................................................................................................................................................AT----AGA-AAATGAA-C-AAACATGCAACC.....................................................................................	25	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................ACCATCT------T---TTACGTTA-------CC-------------AACTTTGAACC..............................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................TTACGTTA-------CC-------------AACTTTGAACTTTGT..........................	25	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................TTACGTTA-------CC-------------AACTTTGAACTTTGG..........................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................TTTGAACTTTGTTTGATGTGCTGTG--------G---T	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
....................TCCGTATCGCGACAACTTGGTGAACC.........................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................T---TTACGTTA-------CC-------------AACTTTGAACTTTGG..........................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

ATGAAGCGTCAGCCGAGAGATCCGTATCGCGACAACTTGGTGAACCGCAGGTCAGGA-AAACTT--AACGCTAAGGTCTTATAAAAA-----A-AAA--AAAACAAA------AACAA------------------------AACTC--------------------CAA-TATCCA--AG---TGTTAA-CCG-----TCTTTTAGTTGATTAGTTACG--A--AAT----AGA-AAATGAA-C-AAACATGCAACCATCT------T---TTACGTTA-------CC-------------AACTTTGAACTTTGTTTGATGTGCTGTG--------G---T	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
........................................................................................................................................................................AA-TATCCA--AG---TGTTAA-CCG-----T...............................................................................................................................................	20	1	1.00	1	1	0	0	0
....................TCCGTATCGCGACAACTTGG...............................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1

droYak3

ATGAAGCGTCAGCCGAGAGATCCGTATCGCGACAACTTGGTGAACCGCAGGTCAGGA-AAACTT--AACGCTAAGGTCTTACAAAAA--------------------------AACAA------------------------AACTC--------------------CAA-TATCCA--AG---TGTTAA-CCG-----TCTTTTAGTTGATTAGTTATG--A--AAT----AGA-AAATGAA-C-AAACATGCAACCATAT------T---TTACGTTA-------CC-------------AACTTTGAACTTTGATTGATGTGCTGTG--------G---T	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.TGAAGCGTCAGCCGAGAGATCCGTATCGC.........................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................TAA-CCG-----TCTTTTAGTTGATTAGT...............................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................GAACTTTGATTGATGTGCTGTG--------.....	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................GATTAGTTATG--A--AAT----AGA-AAATGAA-C-A................................................................................................	27	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
.....................CCGTATCGCGACAACTTGGTGAAC..........................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
................................................AGGTCAGGA-AAACTT--AACGCTAAG............................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

ATGAAGCGTCAGCCGAGAGATCCGTATCGCGACAACTTGGTGAACCGCAGGTCAGGA-AAACTT--AACGCTAAGGTCTTATACAAA-----A-AA---AAACCAAA------AACAA------------------------AATTC--------------------CAA-TATCCA--AG---TGTTAA-CCG-----TCTTTTAGTTGATTAGTTATG--A--AAT----AGA-AAATGAA-C-AAACATGCAAGCATTT------T---TTACGTTA-------CC-------------AACTTTGAACTTTGTTTGATGTACTGTG--------G---T	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...........................................................................................................................................................................................TAA-CCG-----TCTTTTAGTTGA....................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
..............................................................................................................................................................................................................................................ATGAA-C-AAACATGCAAGCATTT------...........................................................................	22	1	1.00	1	0	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................GTTA-------CC-------------AACTTTGAACTT.............................	18	1	1.00	1	0	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................CATGCAAGCATTT------T---TTACGTT................................................................	21	1	1.00	1	0	1	0	0	0	0	0
.......................................GTGAACCGCAGGTCAGGA-A............................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................CTTTGTTTGATGTACTGTG--------G---T	21	1	1.00	1	0	0	0	0	0	1	0

dps_494

2:12640089-12640239 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-3.4	-2.8