ID:

dps_482

 Coordinate:

2:12016315-12016434 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-14.0 -13.8 -13.7

Flybase annnotation

CDS [Dpse\GA20512-cds]; exon [Dpse\GA20512:5]; exon [Dpse\GA20512:4]; CDS [Dpse\GA20512-cds]; intron [Dpse\GA20512-in]

Repeatable elements

NameClassFamilyStrand
(TCG)nSimple_repeatSimple_repeat+
mature
  1. XL_group1e:3106314-3106337 -
  2. XL_group1e:9444655-9444678 +
  3. 4_group5:907403-907426 -
  4. dps_482  2:12016349-12016372 -
  5. XR_group8:3088402-3088425 -
  6. XR_group8:5929339-5929362 -
  7. 4_group4:5335198-5335221 -
  8. XL_group1a:6567259-6567282 -
star

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------##################################################
GGATATCGAGGAACAGGAAGACAAAGCGGAGAGGGACAAGGGCAAGAATGGTGACGACGACGAGGACAACGACGATTACGATGACGAAGACAAAGACGAGGACGATGACGATGACGACGATGACGACGACGACGACGACGACGACGAGGACGAGGATAGTTCTACGTTAGAAGATAGCGAAGATAGCGATGCCGACCCCAAAGTGGAGTTCCTGCTCGGC
**************************************************((((((.((..........)).)).))))...............(((((((((.....((....((.((.((.((.((....)).)).)).)).))....))......))))).))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 V112
male body		 SRR902010
ovaries
 M059
embryo
 GSM343916
embryo
 M062
head
 SRR902012
CNS imaginal disc
.......GATGGAGAGGAAGACAAAGCGG............................................................................................................................................................................................... 22 3 8 79.63 637 587 49 0 1 0 0 0
........ATGGAGAGGAAGACAAAGCGG............................................................................................................................................................................................... 21 3 13 76.46 994 904 88 0 2 0 0 0
..........GGAGAGGAAGACAAAGCGG............................................................................................................................................................................................... 19 2 8 7.75 62 61 1 0 0 0 0 0
........ATGGAGAGGAAGACAAAGCG................................................................................................................................................................................................ 20 3 20 5.85 117 106 11 0 0 0 0 0
.......GATGGAGAGGAAGACAAAGCG................................................................................................................................................................................................ 21 3 20 1.45 29 26 3 0 0 0 0 0
...........GAGAGGAAGACAAAGCGG............................................................................................................................................................................................... 18 2 20 1.15 23 23 0 0 0 0 0 0
............AGAGGAAGACAAAGCGGG.............................................................................................................................................................................................. 18 2 20 0.75 15 14 1 0 0 0 0 0
..................................................................................................................................................AGTCCGACGATAGTTCTAC....................................................... 19 3 6 0.67 4 0 0 4 0 0 0 0
...............GGAAGACAAAGCGGGGTGG.......................................................................................................................................................................................... 19 2 2 0.50 1 1 0 0 0 0 0 0
........................................GGCAAAATTGGTGACGACAAC............................................................................................................................................................... 21 3 7 0.43 3 3 0 0 0 0 0 0
........ATGGAGAGGAAGACAAAGCGGA.............................................................................................................................................................................................. 22 3 5 0.40 2 0 2 0 0 0 0 0
.........TGAAGAGGAAGACAAAGCGG............................................................................................................................................................................................... 20 2 3 0.33 1 1 0 0 0 0 0 0
..........GGAGAGGAAGACAAAGCGGA.............................................................................................................................................................................................. 20 2 4 0.25 1 1 0 0 0 0 0 0
...............GGAAGACAAAGCGGGGTG........................................................................................................................................................................................... 18 2 5 0.20 1 1 0 0 0 0 0 0
.............GAGGAAGACAAAGCGGGGTGG.......................................................................................................................................................................................... 21 3 7 0.14 1 1 0 0 0 0 0 0
................................................................................................................GACGACGATGACGACGACGACGAC.................................................................................... 24 0 8 0.13 1 1 0 0 0 0 0 0
..........................................................................................................GACGATGACGACGATGAC................................................................................................ 18 0 8 0.13 1 0 0 0 1 0 0 0
............AGAGGAAGACAAAGCGGATG............................................................................................................................................................................................ 20 3 20 0.10 2 1 1 0 0 0 0 0
..................................................................CAACGATGATTACTATGAGGA..................................................................................................................................... 21 3 10 0.10 1 1 0 0 0 0 0 0
..............................................................................................................................CGACGACGACGACGACGAC........................................................................... 19 0 20 0.10 2 2 0 0 0 0 0 0
........................................GGCAAAATTGGTGACGAC.................................................................................................................................................................. 18 2 10 0.10 1 1 0 0 0 0 0 0
......................................................................................................................................................................................................CAAAGTGGAGTATCTGCTC... 19 2 11 0.09 1 0 0 0 0 1 0 0
.........................................................................................................TGACGATGACGAGGATGACGA.............................................................................................. 21 1 12 0.08 1 0 0 0 0 0 0 1
.......................................................................................................................................CGACGACGACGAGGACGAGGA................................................................ 21 0 12 0.08 1 0 0 0 0 0 1 0
........ACGGAGAGGAAGACAAAGCGG............................................................................................................................................................................................... 21 3 13 0.08 1 1 0 0 0 0 0 0
...........................................................................................................ACGATGAGGACGATGACGACGACGATG...................................................................................... 27 2 13 0.08 1 1 0 0 0 0 0 0
..................................................................................................................CGACGATGACGACGACGACGACGACG................................................................................ 26 0 14 0.07 1 1 0 0 0 0 0 0
...........TAGAGGAAGACAAAGCGG............................................................................................................................................................................................... 18 2 15 0.07 1 1 0 0 0 0 0 0
......AGAGGGAGAGGAAGACAAAGCGG............................................................................................................................................................................................... 23 3 15 0.07 1 0 0 0 1 0 0 0
........................................................................................................................................GACGACGACGAGGACGAGGA................................................................ 20 0 16 0.06 1 0 0 0 1 0 0 0
.................................................................................................GAGGACGATGACGATGACT........................................................................................................ 19 1 17 0.06 1 1 0 0 0 0 0 0
.........................................................................................................................................ACGACGACGAGGACGAGGA................................................................ 19 0 18 0.06 1 1 0 0 0 0 0 0
................................................................................................................GACGACGATGACGACGACGAC....................................................................................... 21 0 19 0.05 1 1 0 0 0 0 0 0
...............................................................................................................TGACGACGAAGACGCCGATGACGAC.................................................................................... 25 3 20 0.05 1 0 0 0 0 0 1 0
.................................................................................................................................CGACGACGACGACGACGAGGA...................................................................... 21 0 20 0.05 1 1 0 0 0 0 0 0
.................................................................................................................ACGACGATGACGACGACG......................................................................................... 18 0 20 0.05 1 0 0 0 0 1 0 0
..............AGGAAGACAAAGCGGGAA............................................................................................................................................................................................ 18 2 20 0.05 1 1 0 0 0 0 0 0
................................................................................................................GACGACGATGACGACGACGA........................................................................................ 20 0 20 0.05 1 1 0 0 0 0 0 0
..............................................................................................GATGAGGACGATGACGATGAC......................................................................................................... 21 1 20 0.05 1 1 0 0 0 0 0 0
...............................................................................................ATGAGGACGATGACGATGAC......................................................................................................... 20 1 20 0.05 1 1 0 0 0 0 0 0
........................................................................................................................TGACGACGACGACGACGAC................................................................................. 19 0 20 0.05 1 1 0 0 0 0 0 0
..................................................................................................................................GACGACGACGACGACGAGG....................................................................... 19 0 20 0.05 1 0 0 0 0 1 0 0
......................................................................................................................GATGACGACGACGACGACGACGAC.............................................................................. 24 0 20 0.05 1 1 0 0 0 0 0 0

Anti-sense strand reads

CCTATAGCTCCTTGTCCTTCTGTTTCGCCTCTCCCTGTTCCCGTTCTTACCACTGCTGCTGCTCCTGTTGCTGCTAATGCTACTGCTTCTGTTTCTGCTCCTGCTACTGCTACTGCTGCTACTGCTGCTGCTGCTGCTGCTGCTGCTCCTGCTCCTATCAAGATGCAATCTTCTATCGCTTCTATCGCTACGGCTGGGGTTTCACCTCAAGGACGAGCCG
**************************************************((((((.((..........)).)).))))...............(((((((((.....((....((.((.((.((.((....)).)).)).)).))....))......))))).))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902010
ovaries
 V112
male body
........TACCTCTCCTTCTGTTTCGCC............................................................................................................................................................................................... 21 3 13 0.62 8 8 0 0
........TACCTCTCCTTCTGTTTCGC................................................................................................................................................................................................ 20 3 20 0.25 5 5 0 0
.......CTACCTCTCCTTCTGTTTCGC................................................................................................................................................................................................ 21 3 20 0.25 5 5 0 0
...........................................................TTGTCCTGTTGCTGCTAAT.............................................................................................................................................. 19 2 6 0.17 1 1 0 0
...........................................................................................................................GCTGCTGCTGCTGCTGCTG.............................................................................. 19 0 20 0.10 2 0 2 0
...........................................................TTGTCCTGTTGCTGCTAA............................................................................................................................................... 18 2 11 0.09 1 1 0 0
.........CCCTCTCCTTCTGTTTCGCCC.............................................................................................................................................................................................. 21 3 15 0.07 1 1 0 0
.......................................................................TGGAAATGCTACTGCTTGT.................................................................................................................................. 19 3 20 0.05 1 0 0 1
....................................................................................................................................GCTGCTGCTGCTGCTC........................................................................ 16 0 20 0.05 1 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 2:12016265-12016484 - dps_482 GGAT-------------------ATCGAGGAAC---------------AGGAAGACAAAGC---GGAGA--------GGGAC---AAGGGCAAGA------ATGGTGACGACGAC------------------GAGGAC------------------------AACGACGA------------TTA---------CGATG---------------AC---------------------GAAGACAAAGACGAGGACGAT------------------------------GA------------CGATGACGACG-------------ATG---ACGACGACGA---------------------------------------------------------------------------CGAC------GACGACGACGAG------GA---CGAGGATAGTTCTACGTTAGAA--GATA--GCGAAGATA------------GCGA------TGCCGACCCCAAAGTGG---------------AGTTCCTGCTC----------------------------GGC
droPer2 scaffold_0:8482837-8483041 + GGAT-------------------ATCGAGGAAC---------------AGGAAGACGAAGC---GGAGA--------GAGAC------AAGGGCA------AGAATGATGACGAT------------------------------------------------------------------------------------GACG------------------------------------AAGACAAAGACGAGGACGAT------------------------------GACGATGACGACGAT------GACGACGATGACG-ACGATGACGACGATGACGACGACGA---------------------------------------------------------------------CGA------------------------------CGAGGAAAGTA---CGCCAGAA--GATA--GCGAAGATA------------GCGA------TGCCGACCCCAAAATGG---------------AGTTCCTGCTC----------------------------GGC
droWil2 scf2_1100000004558:188870-189082 + TGAC-------------------GAAGAGGATGAAAATGATA------ATGGGGA---------AGA--T---------GAT---GAAGAAGATA------ATGACGAAGACAACGACAAAGACAATGAC---GA------------------------------------------------TG---------ATAATGATGAA---G---------------------------------ACAATGATGAAGACGAT---------------GATGAAGACAATGAT---------------------GAAGAAG---ATAA-AGAAAA------------------------------------------------------------------------------TGACGACGATGAC------GGGGATAATGATGACGA---------------TG---ATGAGA-----ATG--ACAAAGATG------------ACGA------CGAAGA-----------------CGATGAAGA---------------------------------------AGA
droVir3 scaffold_12875:15517071-15517274 - TGAC-------------------AATGACGAGG---------------ACGACGATGAAAA---CGA--T---------------GAAGACAATG------ACGATGAAGATGAG------------------GACG---------------------------AAA----ATG--------------------ATGATGATGAA---GACAATGAT---------------------GAAGATGAGGATGAAAATGGT------------------------------GA------------CGATGACGAAG-------------ACG---------A---------------------------------------------------------CGATGAGAA---CGACAACGACAAC------------------------GATAAAGATAATGACG---ATGACGAA--GACG--ATGAAGACA------------ACGA------CGACGAAGACGAAGA--------------------------------------------------------GGA
droMoj3 scaffold_6359:1107463-1107665 - G-AT-------------------ATGGATGAGG---------------AAGCCGGAGAAGG---CGA--T------GGGGATGATGACAATG---------ATGACGATGATGCC---AATGATGACGATGA---------------------------------------------------TGATGATGATGACGATGATGAT---GAT------G---------------------------ACGA---------------------------------------------------------------------TGGTG-ATGATGATGACGATGGTGACGATGATGACGAGGAAGACGACGAAGATGA---------------------------------------------------------------------------------------TG---ACG-------------AAAATGA------------TGACGATGATGTCGA--------------CATTGATGACTGTCC---------------------------------------AGC
droGri2 scaffold_15245:12322255-12322449 - TGGC-------------------GATGACGATG---------------ACGAGGACGATAC---TGA--C---------------GACGATAACG------ATG---AC------------------AATGATAATG---------------------------------------------------ATGACGAAAATGACGAT---GAT------GAGGAC---------------GAAGACGAT------GACGAG------------------------AATGGAGA------------CGATGATGAAG-------------ATG---------AAGA------------------------------------------------------------------CGAAGA---CGAA------GACGATGA---------------CGATGACGAGA---ATGGAGAA--GATG--ATGAAGACG------------AAGA------CGATGA-----------------CGAGAATGT---------------------------------------AGA
droAna3 scaffold_12088:3374-3585 - G-AT-------------------GACGATGACG---------------ATGACGATGACGA---TGA--C---------GAT---GACGATGACG------ATGACGATGACGAT------------------GACG---------------------------------------------------------ATGACGATGACGATGACGATGAC---------------------GATGACGAT------GACGAT------------------------GACGATGA------------CGATGACGATGACG---ATGA-CGATGA------------------------------------------------------------------------------CGATGACGATGAC------------------------GATGACGATGACGATG---ACGATGAC--GATG--ACGATGACG------------ATGA------CGATGACGATGACGATG---------------A----CTGCCC----------------------------GCC
droBip1 scf7180000396735:1662158-1662351 + G-AT-------------------GACGAGGAAG---------------ATGAGGATAATGAAGACGA--T---------GAT---GAAGAAGATA------ATGGCAATGATGAC------------------G------------------------------------------------------------AAGACGAAGATGAT---------A---------------------------ACGATGGGGACGAA---------------GATAACGAGGATGAC------------------GAT---GAAG---ATCA-GGACGA------------------------------------------------------------------------------CAATAATGACGAC------GAGAACGATGAGGACGG---------------GG---ATGAGGAA--GACG--ATGAAGGCG------------ACGA------AGATGA--------------------AGATAA---------------------------------------TGA
droKik1 scf7180000301810:6336-6566 - ATCTCAAGGAACTGGGACCAGAGGAGGAG--------------------------------------------------CAGGAGGAGCAGA---------AGGAGGACGAAGGC------------------GAAGAC------------------------GAAG----ATGACTACGATG--------ATGAGGAGGAGGAGGAG---------G---------------------------ATTTG-------------------------------------------------------------------------------------------------------------------GGAGACGGTGCTGATGAAGAGGGCGAGGAGGAGGAGGAGTC---CTACGACGACTA------------------------------CGAGCAGTCCTCGAGGACAGA---------------------------------AGAACGCCGC--------------CGCCGCCG-------T----CCGCCCGTTCAAAGCGCCTTAAGTGTCCGGAGTAGGC
droFic1 scf7180000453955:681993-682209 + AGAT-------------------AACGACGAAG---------------ATGAAGACGAAGA---TGA--A---------------GGAGATGATA------ACGATAAGGGTGAC------------------G------------------------------------------------------ACGATGAGAATGATGAC---GAA------GAAAATGACAATGACGATGAGGAAGATGAAGACGAAGAAGAT------------------------------AA------------------------TG---ATAA-GGATGA------------TGAGGATGAGGATGAGGATAATGAGGATGG---------------------------------------------------------------------------------------GG---ATGGAG-----ACG--GTAATGATGACGAGGAAGATAATGA------CGAAGAAGCAAGAGGGG---------------AG----------------------------------------
droEle1 scf7180000491217:392919-393131 + GGAC-------------------GATGAGGATGTAG------------CTGAAGACAACGA---GGA--TGGAACTAGGGAG---GAGAAAAACA------ACGAAGACGAAGAC------------------GAGGAC------------------------GACGAAG---------------------------ACGAAGAC---G------AT---------------------AATGACGAAGACAAGGACGAT------------------------------GA---------------TG------------ACGA-GGACGAAGAAGATACTGATAAGGACGATGAAAAGG------------------------------------------------------------------------------------A---------------GG---ATGAGGATGA----CAAAGAAGA------------TGGGGAGAACGACGA--------------CGAGGATACAAATGG---------------------------------------GGA
droRho1 scf7180000766551:36471-36677 + GGAT---GCA-------------ACTGGGGAAGAAAATGGTGACGAAGACGAGAACGAA-----------------------------GAAGACG------AAAACGACGATGAC------------GAGAACGACG---------------------------------------------------ATGACGAGAACGACGAT---GAC------GAGA------------------------------------------------ACGACGATGACGAGAACGAC---GAAGAC---------GAG---A-------------A------TGGCAAAGACGACGA---------------------------------------------------------------------TGAC------GAAGACAA---------------TACTGACAAGG---ACGATGAA--GATG--AGAATG---------------AGGA------TGAGGATGACGAAGA--------------------------------------------------------AGA
droBia1 scf7180000301505:149467-149662 + AGAT-------------------AACGATGAGG---------------AGGATGATAATAA---GAAGA--------ACGAT------ACTGGTG------GTAAAGATGAAGAT------------------AATG---------------------ACGACGACG---------------------------ACGATGACGAT---G------ATG---------------------ATG---------------------------ATGATGATGATGACGA---------------------CG------------ACG----------------------ACGACGACGACGA---------------------------------------CGACGACGA---CGACGA---TGAT---------GAT------------GATGACGA---CGACG---ACGA----------CGAAGATG---------------AAGA------TGACGAAGACGAAGATG---------------AA-------------------------------------GAC
droTak1 scf7180000410795:34-219 - CGAC-------------------GACGACGACG---------------ACGACGACGAG-------A--C---------GAC---GACGACGACG------ACGACGACGACGAC------------------GACG---------------------------ACG---------------------------ACGACGACGAC---G------ACG---------------------ACG---------------------------ACGACGACGACGACGACGACGA---CGAC---------GA----------------CGA------CGA------------------------------------------------------------CGACGACGA---CGACGA---CGAC---------GAC------------GACGACGA---CGACG---ACGA----------CGACGACGA------------CGACGA------CGACGACGACGACGACG---------------AC----------------------------------------
droEug1 scf7180000409466:1012637-1012845 + A--T-------------------AGCGTCGAAG---------------ATGAAGATGAAGC---GGA--T---------GCC---GCCGACGATG------CC---------------AGCAATGCGGCTGA---------------------------------------------------GGAGGAGCATGCAGATGATGAG---GAT------ACGGAT---------------GGCAA---------------------------------------CAATGAG---GAGGAGGACGAG----------------------GACGA------------------------------------------------------------------------------CGATGACCAGGAGGAGGAGGACGACGA------CGAGGATGACTCCGACAGCA---CTGCGGAA--CAGG--AAAAAGAGC------------CCGA------GGCCGAGACCGAAGATG---------------AG----------------------------------------
dm3 chr2R:2618293-2618500 - GGAT-------------------GACGAAGAAG---------------ATGATAATAACGG---GAA--------------------------------------------------------------------------------------------------CG---------------------------------------------------------------------------------ACGAGGACGAC------------------------------GA---------------------------GGACG-AAGAAGAAGATGACAATAATGATGACGATGACGAGGATGATGAAGATGATAATAATGGAGACGACGAGGATGACGAAGAGGACAATAATGAAAACGAAGATGAAGATAATGA------------------------TG---GGGACGAC--GATG--ACGGAGAT------------GACAA------TGAGGACGACAAGGACG---------------AG----------------------------------------
droSim2 2r:3483292-3483494 - A-AT-------------------GATGATGAAA---------------ATGGGGACGACGG---GGA--T---------GAC---GAAGATGATA------ATAATGAGGACGAC------------------GAGGATGACGAAGAAGATGATAATAACGGGAACG---------------------------------------------------------------------------------ACGAGGACGAT------------------------------GA---------------------------TGACG-AAGATAAAGATGACAATAATGATGACGACGACGAGGATGATGAAGACGA---------------------------------------------------------------------------------------TA---ATAAAATG--GACG--ACGAGGATA------------ACGA------AGAGGA-----------------CAATAATGA---------------------------------------GGA
droSec2 scaffold_1:291045-291253 - GGAT-------------------GATGATGAAA---------------ATGGGGACAACGG---GGA--T---------GAC---GAAGATGATA------ATAATGAGGATGAC------------------GAGGATGACGAAGGAGATGATAATAACGGGAAAG---------------------------------------------------------------------------------ACGAGGACGAG------------------------------GA---------------------------TGACG-AAGATGAAGATGACAATAATGATGACGACGACGAGGATGATGAAGACGATAATAAAAGAGG---------------------------------------------------------------------------------CGACGAG--GATG--ACGAAGAGA------------ACAA------TAATGAGGACAAAG------------------------------------------------------------
droYak3 2L:15355119-15355311 - GGAT-------------------GACGAAGAAG---------------AAGATGATAATGG---GAA--C---------GAC---GAAGACGATA------ATGAAGATGACAAT------------------AACGAC------------------------GACG---------------------------AGAATGACGAA---G------AGG---------------------AAG---------------------------ATGAAGAAGAAGATAATGAT---GACGAC---------GAG---G-------------A------TGA------------------------------------------------------------CGGGGAAGA---TGACAA---TGAG---------GAC------------GACAAGGA---CGAAG---ATGA----------TGAAGAAGA------------TAATAA------TGATGACGACAAGGACG---------------AG----------------------------------------
droEre2 scaffold_4929:19927199-19927386 + G-AT-------------------GACGAGA------------------ATGGGGACGACGA---CGA--T---------GAC---GAGAATGACGAAGAGAATGGAGACGACGAC------------------GAGGAT------------------------GACGAAGA------------GAA---------CAATG---------------------------------------------------------AAGAAGACGAAGATGAAGAAGAAGATAATGAT---GACGAC---------GAG---G-------------A------------------------------------------------------------------------------------------TGAC------GGAGATGGTGACAATGA---------------GG---AAGAGGATGA----CGAAGAAG---------------ATAA------TAATGA-----------------TGAGGATGA---------------------------------------CGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
GGAT-------------------ATCGAGGAAC---------------AGGAAGACAAAGC---GGAGA--------GGGAC---AAGGGCAAGA------ATGGTGACGACGAC------------------GAGGAC------------------------AACGACGA------------TTA---------CGATG---------------AC---------------------GAAGACAAAGACGAGGACGAT------------------------------GA------------CGATGACGACG-------------ATG---ACGACGACGA---------------------------------------------------------------------------CGAC------GACGACGACGAG------GA---CGAGGATAGTTCTACGTTAGAA--GATA--GCGAAGATA------------GCGA------TGCCGACCCCAAAGTGG---------------AGTTCCTGCTC----------------------------GGCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................................................................................................................................................................................................................................................................................................................GACGACG-------------ATG---ACGACGACGA---------------------------------------------------------------------------CGAC------..............................................................................................................................................................2480.1310100000000
.................................................................................................................................................................................................................................................................................................GA------------CGATGACGACG-------------ATG---AC...........................................................................................................................................................................................................................................................1880.1310010000000
.................................................................................................................................................................................................................................................................................................................................................CGACGA---------------------------------------------------------------------------CGAC------GACGACGAC.....................................................................................................................................................19200.1020200000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................C------GACGACGACGAG------GA---CGAGGA.................................................................................................................................21120.0810001000000
.....................................................................................................................................................................................................................................................................................................................CGACG-------------ATG---ACGACGACGA---------------------------------------------------------------------------CGAC------GACG..........................................................................................................................................................26140.0710100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................GACGACGACGAG------GA---CGAGGA.................................................................................................................................20160.0610010000000
..........................................................................................................................................................................................................................................................GAGGACGAT------------------------------GA------------CGATGACT...................................................................................................................................................................................................................................................................................19170.0610100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................ACGACGACGAG------GA---CGAGGA.................................................................................................................................19180.0610100000000
...................................................................................................................................................................................................................................................................................................................GACGACG-------------ATG---ACGACGACGA---------------------------------------------------------------------------C.......................................................................................................................................................................21190.0510100000000
....................................................................................................................................................................................................................................................................................................................................................CGA---------------------------------------------------------------------------CGAC------GACGACGACGAG------GA---.......................................................................................................................................21200.0510100000000
....................................................................................................................................................................................................................................................................................................................ACGACG-------------ATG---ACGACGACG....................................................................................................................................................................................................................................................18200.0510000100000
...................................................................................................................................................................................................................................................................................................................GACGACG-------------ATG---ACGACGACGA---------------------------------------------------------------------------........................................................................................................................................................................20200.0510100000000
........................................................................................................................................................................................................................................................................................................................................TG---ACGACGACGA---------------------------------------------------------------------------CGAC------GAC...........................................................................................................................................................19200.0510100000000
.....................................................................................................................................................................................................................................................................................................................................................GA---------------------------------------------------------------------------CGAC------GACGACGACGAG------G...........................................................................................................................................19200.0510000100000
.........................................................................................................................................................................................................................................................................................................................G-------------ATG---ACGACGACGA---------------------------------------------------------------------------CGAC------GACGAC........................................................................................................................................................24200.0510100000000
droPer2
GGAT-------------------ATCGAGGAAC---------------AGGAAGACGAAGC---GGAGA--------GAGAC------AAGGGCA------AGAATGATGACGAT------------------------------------------------------------------------------------GACG------------------------------------AAGACAAAGACGAGGACGAT------------------------------GACGATGACGACGAT------GACGACGATGACG-ACGATGACGACGATGACGACGACGA---------------------------------------------------------------------CGA------------------------------CGAGGAAAGTA---CGCCAGAA--GATA--GCGAAGATA------------GCGA------TGCCGACCCCAAAATGG---------------AGTTCCTGCTC----------------------------GGCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......................................................................................................................................................................................................................................................................................................................................GATGACGACGATGACGACGACGA---------------------------------------------------------------------C.......................................................................................................................................................................2460.171100000
...........................................................................................................................................................................................................................................................................................................................................CGACGATGACGACGACGA---------------------------------------------------------------------CGA------------------------------CG.....................................................................................................................................23200.153300000
...........................................................................................................................................................................................................................................................................................................................................CGACGATGACGACGACGA---------------------------------------------------------------------CGA------------------------------.......................................................................................................................................21200.102020000
.........................................................................................................................................................................................................................................................................................................................................GACGACGATGACGACGACGA---------------------------------------------------------------------C.......................................................................................................................................................................21200.102200000
............................................................................................................................................................................................................................................................................................................................................GACGATGACGACGACGA---------------------------------------------------------------------CGA------------------------------.......................................................................................................................................20200.102020000
.........................................................................................................................................................................................................................................................................................................................GACGATGACG-ACGATGACGAC...........................................................................................................................................................................................................................................................21110.091010000
..........................................................................................................................................................................................................................................................................................................GACGAT------GACGACGATGACG-AC....................................................................................................................................................................................................................................................................21110.091010000
..................................................................................................................................................................................................................................................................................................................................G-ACGATGACGACGATGACGAC..................................................................................................................................................................................................................................................21110.091010000
.................................................................................................................................................................................................................................................................................................GACGATGACGACGAT------GACGAC..............................................................................................................................................................................................................................................................................21110.091010000
..................................................................................................................................................................................................................................................................................................................................G-ACGATGACGACGATGACGA...................................................................................................................................................................................................................................................20140.071001000
..........................................................................................................................................................................................................................................................................................................GACGAT------GACGACGATGACG-A.....................................................................................................................................................................................................................................................................20140.071001000
.........................................................................................................................................................................................................................................................................................................................GACGATGACG-ACGATGACGA............................................................................................................................................................................................................................................................20140.071001000
.................................................................................................................................................................................................................................................................................................GACGATGACGACGAT------GACGA...............................................................................................................................................................................................................................................................................20140.071001000
....................................................................................................................................................................................................................................................................................................GATGACGACGAT------GACGAC..............................................................................................................................................................................................................................................................................18170.061010000
.............................................................................................................................................................................................................................................................................................................GAT------GACGACGATGACG-AC....................................................................................................................................................................................................................................................................18170.061010000
............................................................................................................................................................................................................................................................................................................................GATGACG-ACGATGACGAC...........................................................................................................................................................................................................................................................18170.061010000
......................................................................................................................................................................................................................................................................................................................................GATGACGACGATGACGAC..................................................................................................................................................................................................................................................18170.061010000
.............................................................................................................................................................................................................................................................GACGAT------------------------------GACGATGACGAC.............................................................................................................................................................................................................................................................................................18200.051010000
..............................................................................................................................................................................................................................................................................................................................................CGATGACGACGACGA---------------------------------------------------------------------CGA------------------------------CGA....................................................................................................................................21200.051010000
droWil2
TGAC-------------------GAAGAGGATGAAAATGATA------ATGGGGA---------AGA--T---------GAT---GAAGAAGATA------ATGACGAAGACAACGACAAAGACAATGAC---GA------------------------------------------------TG---------ATAATGATGAA---G---------------------------------ACAATGATGAAGACGAT---------------GATGAAGACAATGAT---------------------GAAGAAG---ATAA-AGAAAA------------------------------------------------------------------------------TGACGACGATGAC------GGGGATAATGATGACGA---------------TG---ATGAGA-----ATG--ACAAAGATG------------ACGA------CGAAGA-----------------CGATGAAGA---------------------------------------AGASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
............................................................................................ATA------ATGACGAAGACAACGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000
......................................................................................AAGAAGATA------ATGACGAAGACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100
.........................................A------ATGGGGA---------AGA--T---------GAT---GAAGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
.......................................................................................................................................................................................................................................................GATGAAGACGAT---------------GATGAAGACA..............................................................................................................................................................................................................................................................................................................2211.00110000
....................................ATGATA------ATGGGGA---------AGA--T---------GAT---GAAGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--ACAAAGATG------------ACGA------CGAAGA-----------------...................................................2011.00100100
......................................GATA------ATGGGGA---------AGA--T---------GAT---GAAGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100
.....................................................................................................................................................................................................................................................ATGATGAAGACGAT---------------GATGAAGACAAG............................................................................................................................................................................................................................................................................................................2611.00110000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGATGACGA---------------TG---ATGAGA-----ATG--ACAA.....................................................................................................2611.00100100
........................................................................................................................................................................................................................................................................................................................................AAA------------------------------------------------------------------------------TGACGACGATGAC------GGGGATAA......................................................................................................................................................2411.00100100
............................................................................................ATA------ATGACGAAGACAACGACAAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00110000
................................................................................................................................AC---GA------------------------------------------------TG---------ATAATGATGAA---G---------------------------------ACA.....................................................................................................................................................................................................................................................................................................................................................2111.00100100
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATG------------ACGA------CGAAGA-----------------CGATGAA............................................2111.00100100
.............................................................................................................................................................................................................................................................................................................................................................................................................................GACGATGAC------GGGGATAATGATGACG..............................................................................................................................................2511.00100100
.....................................TGATA------ATGGGGA---------AGA--T---------GAT---GAAGAAGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGATG------------ACGA------CGAAGA-----------------CGAT...............................................2011.00100100
...............................................................................................................................................................................................................................................................CGAT---------------GATGAAGACAATGA..........................................................................................................................................................................................................................................................................................................1820.50100010
................................................................................................................................................................................................................G---------------------------------ACAATGATGAAGACGAT---------------G.......................................................................................................................................................................................................................................................................................................................1920.50100010
.....................................................................................................................................................................................................................................................ATGATGAAGACGAT---------------GATG....................................................................................................................................................................................................................................................................................................................18110.09100001
droVir3
TGAC-------------------AATGACGAGG---------------ACGACGATGAAAA---CGA--T---------------GAAGACAATG------ACGATGAAGATGAG------------------GACG---------------------------AAA----ATG--------------------ATGATGATGAA---GACAATGAT---------------------GAAGATGAGGATGAAAATGGT------------------------------GA------------CGATGACGAAG-------------ACG---------A---------------------------------------------------------CGATGAGAA---CGACAACGACAAC------------------------GATAAAGATAATGACG---ATGACGAA--GACG--ATGAAGACA------------ACGA------CGACGAAGACGAAGA--------------------------------------------------------GGASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................C------------------------GATAAAGATAATGACG---ATGACGA..................................................................................................................2413.003000000000000002000100000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACGAA--GACG--ATGAAGACA------------ACGA------CGA.......................................................................2711.001000000000000000001000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---ATGACGAA--GACG--ATGAA....................................................................................................1811.001000000000000000000010000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................CGACAAC------------------------GATAAAGATAATGACG---ATGA.....................................................................................................................2711.001000000000000000000100000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................GAGAA---CGACAACGACAAC------------------------GATAAA......................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................ATGACGAAG-------------ACG---------A---------------------------------------------------------CGATGAGA.....................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................CG---------A---------------------------------------------------------CGATGAGAA---CGACAACGAC.......................................................................................................................................................................2211.001000000000000000010000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................C------------------------GATAAAGATAATGACG---ATGA.....................................................................................................................2111.001000000000000000000100000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................CGAAG-------------ACG---------A---------------------------------------------------------CGATGAGAA---CGACAACGA........................................................................................................................................................................2711.001000000000000000000100000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................AGGATGAAAATGGT------------------------------GA------------CGAT.......................................................................................................................................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
..............................................................................................................ATGAG------------------GACG---------------------------AAA----ATG--------------------ATGAT...................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................C------------------------GATAAAGATAATGACG---AT.......................................................................................................................1911.001000000000000001000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................TGAT---------------------GAAGATGAGGATGA..............................................................................................................................................................................................................................................................................................................................................1830.331000000000100000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................GATGACGAAG-------------ACG---------A---------------------------------------------------------CGAC.........................................................................................................................................................................................18200.051000000000000000000100000000000000000000000000000000000000000000
droMoj3
G-AT-------------------ATGGATGAGG---------------AAGCCGGAGAAGG---CGA--T------GGGGATGATGACAATG---------ATGACGATGATGCC---AATGATGACGATGA---------------------------------------------------TGATGATGATGACGATGATGAT---GAT------G---------------------------ACGA---------------------------------------------------------------------TGGTG-ATGATGATGACGATGGTGACGATGATGACGAGGAAGACGACGAAGATGA---------------------------------------------------------------------------------------TG---ACG-------------AAAATGA------------TGACGATGATGTCGA--------------CATTGATGACTGTCC---------------------------------------AGCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................................................................................................................................ATGA---------------------------------------------------TGATGATGATGACGATGAT................................................................................................................................................................................................................................................................................................................................................................................................23200.102100001
........................................................................................................................................................................................GATGATGATGACGATGATGAT---GAT------G---------------------------A....................................................................................................................................................................................................................................................................................................................................................26100.101010000
...................................................................................................................................A---------------------------------------------------TGATGATGATGACGATGATGAT---..........................................................................................................................................................................................................................................................................................................................................................................................23160.061000001
................................................................................................................................ATGA---------------------------------------------------TGATGATGATGACGATGATG...............................................................................................................................................................................................................................................................................................................................................................................................24200.051100000
..................................................................................................................................GA---------------------------------------------------TGATGATGATGACGAT...................................................................................................................................................................................................................................................................................................................................................................................................18200.051000001
droGri2
TGGC-------------------GATGACGATG---------------ACGAGGACGATAC---TGA--C---------------GACGATAACG------ATG---AC------------------AATGATAATG---------------------------------------------------ATGACGAAAATGACGAT---GAT------GAGGAC---------------GAAGACGAT------GACGAG------------------------AATGGAGA------------CGATGATGAAG-------------ATG---------AAGA------------------------------------------------------------------CGAAGA---CGAA------GACGATGA---------------CGATGACGAGA---ATGGAGAA--GATG--ATGAAGACG------------AAGA------CGATGA-----------------CGAGAATGT---------------------------------------AGASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
....................................................................................................................................................................................................................................................................................................................................................................................................................................AA------GACGATGA---------------CGATGACG...............................................................................................................................18170.06110
droAna3
G-AT-------------------GACGATGACG---------------ATGACGATGACGA---TGA--C---------GAT---GACGATGACG------ATGACGATGACGAT------------------GACG---------------------------------------------------------ATGACGATGACGATGACGATGAC---------------------GATGACGAT------GACGAT------------------------GACGATGA------------CGATGACGATGACG---ATGA-CGATGA------------------------------------------------------------------------------CGATGACGATGAC------------------------GATGACGATGACGATG---ACGATGAC--GATG--ACGATGACG------------ATGA------CGATGACGATGACGATG---------------A----CTGCCC----------------------------GCCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAC--GATG--ACGATGACG------------ATG.................................................................................19200.051000010
...................................................................................................................................................................................................................................................................................................................................................................................................................................GAC------------------------GATGACGATGACGATG---.........................................................................................................................19200.051000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--ACGATGACG------------ATGA------CGATG.....................................................................19200.051000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---ACGATGAC--GATG--ACGATG...................................................................................................19200.051000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................GACGATGAC------------------------GATGACGATG..................................................................................................................................19200.051000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGATG---ACGATGAC--GATG--.........................................................................................................19200.051000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA------CGATGACGATGACGATG---------------..........................................19200.051000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACG------------ATGA------CGATGACGATG...............................................................19200.051000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGATGACGATG---ACGATG...................................................................................................................19200.051000010
droBip1
G-AT-------------------GACGAGGAAG---------------ATGAGGATAATGAAGACGA--T---------GAT---GAAGAAGATA------ATGGCAATGATGAC------------------G------------------------------------------------------------AAGACGAAGATGAT---------A---------------------------ACGATGGGGACGAA---------------GATAACGAGGATGAC------------------GAT---GAAG---ATCA-GGACGA------------------------------------------------------------------------------CAATAATGACGAC------GAGAACGATGAGGACGG---------------GG---ATGAGGAA--GACG--ATGAAGGCG------------ACGA------AGATGA--------------------AGATAA---------------------------------------TGASizeHit CountTotal NormTotal
No Reads
droKik1
ATCTCAAGGAACTGGGACCAGAGGAGGAG--------------------------------------------------CAGGAGGAGCAGA---------AGGAGGACGAAGGC------------------GAAGAC------------------------GAAG----ATGACTACGATG--------ATGAGGAGGAGGAGGAG---------G---------------------------ATTTG-------------------------------------------------------------------------------------------------------------------GGAGACGGTGCTGATGAAGAGGGCGAGGAGGAGGAGGAGTC---CTACGACGACTA------------------------------CGAGCAGTCCTCGAGGACAGA---------------------------------AGAACGCCGC--------------CGCCGCCG-------T----CCGCCCGTTCAAAGCGCCTTAAGTGTCCGGAGTAGGCSizeHit CountTotal NormTotal
No Reads
droFic1
AGAT-------------------AACGACGAAG---------------ATGAAGACGAAGA---TGA--A---------------GGAGATGATA------ACGATAAGGGTGAC------------------G------------------------------------------------------ACGATGAGAATGATGAC---GAA------GAAAATGACAATGACGATGAGGAAGATGAAGACGAAGAAGAT------------------------------AA------------------------TG---ATAA-GGATGA------------TGAGGATGAGGATGAGGATAATGAGGATGG---------------------------------------------------------------------------------------GG---ATGGAG-----ACG--GTAATGATGACGAGGAAGATAATGA------CGAAGAAGCAAGAGGGG---------------AG----------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
GGAC-------------------GATGAGGATGTAG------------CTGAAGACAACGA---GGA--TGGAACTAGGGAG---GAGAAAAACA------ACGAAGACGAAGAC------------------GAGGAC------------------------GACGAAG---------------------------ACGAAGAC---G------AT---------------------AATGACGAAGACAAGGACGAT------------------------------GA---------------TG------------ACGA-GGACGAAGAAGATACTGATAAGGACGATGAAAAGG------------------------------------------------------------------------------------A---------------GG---ATGAGGATGA----CAAAGAAGA------------TGGGGAGAACGACGA--------------CGAGGATACAAATGG---------------------------------------GGASizeHit CountTotal NormTotal
No Reads
droRho1
GGAT---GCA-------------ACTGGGGAAGAAAATGGTGACGAAGACGAGAACGAA-----------------------------GAAGACG------AAAACGACGATGAC------------GAGAACGACG---------------------------------------------------ATGACGAGAACGACGAT---GAC------GAGA------------------------------------------------ACGACGATGACGAGAACGAC---GAAGAC---------GAG---A-------------A------TGGCAAAGACGACGA---------------------------------------------------------------------TGAC------GAAGACAA---------------TACTGACAAGG---ACGATGAA--GATG--AGAATG---------------AGGA------TGAGGATGACGAAGA--------------------------------------------------------AGASizeHit CountTotal NormTotal
No Reads
droBia1
AGAT-------------------AACGATGAGG---------------AGGATGATAATAA---GAAGA--------ACGAT------ACTGGTG------GTAAAGATGAAGAT------------------AATG---------------------ACGACGACG---------------------------ACGATGACGAT---G------ATG---------------------ATG---------------------------ATGATGATGATGACGA---------------------CG------------ACG----------------------ACGACGACGACGA---------------------------------------CGACGACGA---CGACGA---TGAT---------GAT------------GATGACGA---CGACG---ACGA----------CGAAGATG---------------AAGA------TGACGAAGACGAAGATG---------------AA-------------------------------------GACSizeHit CountTotal NormTotal
No Reads
droTak1
CGAC-------------------GACGACGACG---------------ACGACGACGAG-------A--C---------GAC---GACGACGACG------ACGACGACGACGAC------------------GACG---------------------------ACG---------------------------ACGACGACGAC---G------ACG---------------------ACG---------------------------ACGACGACGACGACGACGACGA---CGAC---------GA----------------CGA------CGA------------------------------------------------------------CGACGACGA---CGACGA---CGAC---------GAC------------GACGACGA---CGACG---ACGA----------CGACGACGA------------CGACGA------CGACGACGACGACGACG---------------AC----------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
A--T-------------------AGCGTCGAAG---------------ATGAAGATGAAGC---GGA--T---------GCC---GCCGACGATG------CC---------------AGCAATGCGGCTGA---------------------------------------------------GGAGGAGCATGCAGATGATGAG---GAT------ACGGAT---------------GGCAA---------------------------------------CAATGAG---GAGGAGGACGAG----------------------GACGA------------------------------------------------------------------------------CGATGACCAGGAGGAGGAGGACGACGA------CGAGGATGACTCCGACAGCA---CTGCGGAA--CAGG--AAAAAGAGC------------CCGA------GGCCGAGACCGAAGATG---------------AG----------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
GGAT-------------------GACGAAGAAG---------------ATGATAATAACGG---GAA--------------------------------------------------------------------------------------------------CG---------------------------------------------------------------------------------ACGAGGACGAC------------------------------GA---------------------------GGACG-AAGAAGAAGATGACAATAATGATGACGATGACGAGGATGATGAAGATGATAATAATGGAGACGACGAGGATGACGAAGAGGACAATAATGAAAACGAAGATGAAGATAATGA------------------------TG---GGGACGAC--GATG--ACGGAGAT------------GACAA------TGAGGACGACAAGGACG---------------AG----------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---GGGACGAC--GATG--ACGGT....................................................................................................1815.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000003000000000000000001000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................GAAAACGAAGATGAAGATAATGA------------------------T.............................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGACGAC--GATG--ACGGATC..................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................CGAGGATGATGAAGATGATAA..................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAAGATGAAGATAATGA------------------------TG---GGGA.....................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................GGACAATAATGAAAACGAAGAT.................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
...........................................................GG---GAA--------------------------------------------------------------------------------------------------CG---------------------------------------------------------------------------------ACGAGGACGAC------------------------------GA---------------------------GGACG-......................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................TGGAGACGACGAGGATGACG...........................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGAAAACGAAGATGAAG.............................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................GATGATAATAATGGAGACGAC.....................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................GACGAGGATGACGAAGAG......................................................................................................................................................................................1821.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................GGACG-AAGAAGAAGATGACA.......................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................CG-AAGAAGAAGATGACAATAAT..................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................TGATGAAGATGATAATAATGGAGACG.......................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...............................AG---------------ATGATAATAACGG---GAA--------------------------------------------------------------------------------------------------CG---------------------------------------------------------------------------------ACGA..............................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................GAGGATGATGAAGATGAT....................................................................................................................................................................................................................1830.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................GGATGATGAAGATGATAAT.................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................TGATGACGATGACGAGGA.................................................................................................................................................................................................................................1830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---GGGACGAC--GATG--ACGGC....................................................................................................1830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................GATGATGAAGATGATAAT.................................................................................................................................................................................................................1830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
droSim2
A-AT-------------------GATGATGAAA---------------ATGGGGACGACGG---GGA--T---------GAC---GAAGATGATA------ATAATGAGGACGAC------------------GAGGATGACGAAGAAGATGATAATAACGGGAACG---------------------------------------------------------------------------------ACGAGGACGAT------------------------------GA---------------------------TGACG-AAGATAAAGATGACAATAATGATGACGACGACGAGGATGATGAAGACGA---------------------------------------------------------------------------------------TA---ATAAAATG--GACG--ACGAGGATA------------ACGA------AGAGGA-----------------CAATAATGA---------------------------------------GGASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................TGAAA---------------ATGGGGACGACGG---GGA--.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000100000000
...........................................................................................................................................................................................................................................................................................................................................................GACGACGACGAGGATGATGAAGACG......................................................................................................................................................................................................................2511.00101000000000000000
....................................................................................................................................................................ACG---------------------------------------------------------------------------------ACGAGGACGAT------------------------------GA---------------------------TGACG-AA....................................................................................................................................................................................................................................................................2311.00100100000000000000
.....................................................................................................................................................................CG---------------------------------------------------------------------------------ACGAGGACGAT------------------------------GA---------------------------TGAC........................................................................................................................................................................................................................................................................1920.50110000000000000000
.....................................................................................................................................................................CG---------------------------------------------------------------------------------ACGAGGACGAT------------------------------GA---------------------------TGACG-AA....................................................................................................................................................................................................................................................................2220.50101000000000000000
............................................................................................................................................................................................................................................................GGACGAT------------------------------GA---------------------------TGACG-A.....................................................................................................................................................................................................................................................................15160.06100000010000000000
droSec2
GGAT-------------------GATGATGAAA---------------ATGGGGACAACGG---GGA--T---------GAC---GAAGATGATA------ATAATGAGGATGAC------------------GAGGATGACGAAGGAGATGATAATAACGGGAAAG---------------------------------------------------------------------------------ACGAGGACGAG------------------------------GA---------------------------TGACG-AAGATGAAGATGACAATAATGATGACGACGACGAGGATGATGAAGACGATAATAAAAGAGG---------------------------------------------------------------------------------CGACGAG--GATG--ACGAAGAGA------------ACAA------TAATGAGGACAAAG------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...........................................................................................................................................................................................................................................................................................................................................................................................AAGAGG---------------------------------------------------------------------------------CGACGAG--GATG--ACGAAGAGA------------AC..................................................................................2811.0010100
..............................................................................................................................................................................................................................................................................................................................TGACG-AAGATGAAGATGACAAT.....................................................................................................................................................................................................................................................2211.0010100
...............................................................................................................................................................................................................................................................CGAG------------------------------GA---------------------------TGACG-AAGATGAAGA............................................................................................................................................................................................................................................................2111.0010100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAAGAGA------------ACAA------TAATGAT...................................................................2011.0010100
...............................................................................................................................................................................................................................................................................................................................GACG-AAGATGAAGATGAC........................................................................................................................................................................................................................................................1820.5010010
droYak3
GGAT-------------------GACGAAGAAG---------------AAGATGATAATGG---GAA--C---------GAC---GAAGACGATA------ATGAAGATGACAAT------------------AACGAC------------------------GACG---------------------------AGAATGACGAA---G------AGG---------------------AAG---------------------------ATGAAGAAGAAGATAATGAT---GACGAC---------GAG---G-------------A------TGA------------------------------------------------------------CGGGGAAGA---TGACAA---TGAG---------GAC------------GACAAGGA---CGAAG---ATGA----------TGAAGAAGA------------TAATAA------TGATGACGACAAGGACG---------------AG----------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................................................ATAATGG---GAA--C---------GAC---GAAGACGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................G---------GAC------------GACAAGGA---CGAAG---ATGA----------TG.........................................................................................................2311.00101000000000
........................................................................................................................................................................................................................................................................................GATAATGAT---GACGAC---------GAG---G-------------...................................................................................................................................................................................................................................................................1911.00100000010000
..............................................................................................................................................................................................................................................................................................GAT---GACGAC---------GAG---G-------------A------TGA------------------------------------------------------------CG...........................................................................................................................................................................................1920.50100000010000
............................................................................................................................................................................................................................................................................................ATGAT---GACGAC---------GAG---G-------------A------TG..........................................................................................................................................................................................................................................................1830.33100000010000
droEre2
G-AT-------------------GACGAGA------------------ATGGGGACGACGA---CGA--T---------GAC---GAGAATGACGAAGAGAATGGAGACGACGAC------------------GAGGAT------------------------GACGAAGA------------GAA---------CAATG---------------------------------------------------------AAGAAGACGAAGATGAAGAAGAAGATAATGAT---GACGAC---------GAG---G-------------A------------------------------------------------------------------------------------------TGAC------GGAGATGGTGACAATGA---------------GG---AAGAGGATGA----CGAAGAAG---------------ATAA------TAATGA-----------------TGAGGATGA---------------------------------------CGASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.......................................................................................................................................................................................................................................................................................................GAC---------GAG---G-------------A------------------------------------------------------------------------------------------TGAC------GGAGATGGTG....................................................................................................................................................2211.0011000000
..........................GAGA------------------ATGGGGACGACGA---CGA--T---------GAC---.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
.............................A------------------ATGGGGACGACGA---CGA--T---------GAC---.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
........................................................................................AATGACGAAGAGAATGGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000000
.....................................................................................................................................................................................................ATG---------------------------------------------------------AAGAAGACGAAGATGAAG.......................................................................................................................................................................................................................................................................................................................2111.0010000100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGGTGACAATGA---------------GG---AAGAGGATG................................................................................................................2611.0011000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGA---------------GG---AAGAGGATGA----CGAAGAAG---------------A...................................................................................2411.0011000000
..........................................................................................................................................................................................................................................................................................TAATGAT---GACGAC---------GAG---G-------------A------------------------------------------------------------------------------------------TGAC------GGAG..........................................................................................................................................................2611.0010000100

Generated: 05/17/2015 at 10:33 PM