ID:

dps_481

 Coordinate:

2:11980326-11980476 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-3.0 -2.8 -2.7 -2.5

Flybase annnotation

exon [Dpse\GA30142:6]; CDS [Dpse\GA30142-cds]; exon [Dpse\GA30142:5]; CDS [Dpse\GA30142-cds]; intron [Dpse\GA30142-in]

No Repeatable elements found

mature
  1. dps_481  2:11980370-11980390 -
  2. Unknown_singleton_3020:2296-2316 +
star
  1. dps_481  2:11980329-11980349 -
  2. Unknown_singleton_3020:2337-2357 +

Sense Strand Reads

######################################################-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TTGGAGTTGGGCATACTCATTGGCCTGCTGGTGCTAAAGTTCGCCCACCTGTGAGAGCCACTGGAAGCGGACCCTTGTTTTTATTCCAAAGTTATAATACACCCAGCGATTAATTCGGGCATTTGATTACGTTTATTTGAATTGTTCTACCTGTAACATCAACGTTAAGCCCATGCCTTAGACACACACTAGAGTAAGTTATATTTCGCATTATGATAATAAACACAGATAATATAGTTGGAAGTTCTCCG
****************************************************************************************************************************************((......(((((..(((..........((((((....)).))))..)))...)))))..))***************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902011
testis
 V112
male body		 M062
head
 GSM444067
head
 M059
embryo
 GSM343916
embryo
 M022
male body		 SRR902010
ovaries
........................................................................................................................................TTGAATTGTTCTACCTGTAAC.............................................................................................. 21 0 2 5.00 10 3 7 0 0 0 0 0 0 0
.................................................................................................................................................TCTACCTGTAACATCAACGTT..................................................................................... 21 0 2 4.00 8 5 2 0 0 1 0 0 0 0
.................................................................................................................................................................................TTAGACACACACTAGAGTAAG..................................................... 21 0 2 2.50 5 2 0 2 0 1 0 0 0 0
................................................................................................................................................TTCTACCTGTAACATCAACGT...................................................................................... 21 0 2 2.00 4 3 0 0 0 1 0 0 0 0
....................................................................................................................................TTATTTGAATTGTTCTACCTG.................................................................................................. 21 0 2 2.00 4 2 2 0 0 0 0 0 0 0
.......................................................................................................................................TTTGAATTGTTCTACCTGTAA............................................................................................... 21 0 2 1.50 3 3 0 0 0 0 0 0 0 0
...................................................................................................................................TTTATTTGAATTGTTCTACCT................................................................................................... 21 0 2 1.50 3 3 0 0 0 0 0 0 0 0
........................................................................................................................................................GTAACATCAACGTTAAGCCC............................................................................... 20 0 2 1.50 3 2 0 0 1 0 0 0 0 0
.........................................................................................................................................TGAATTGTTCTACCTGTAAC.............................................................................................. 20 0 2 1.50 3 3 0 0 0 0 0 0 0 0
........................................................................................................................................................GTAACATCAACGTTAAGCCCA.............................................................................. 21 0 2 1.50 3 3 0 0 0 0 0 0 0 0
.............................................................................................................................................................................TGCCTTAGACACACACTAGAG......................................................... 21 0 2 1.50 3 3 0 0 0 0 0 0 0 0
......................................................................................................................................................................AAGCCCATGCCTTAGACACAC................................................................ 21 0 2 1.50 3 1 0 0 1 0 1 0 0 0
...................................................................................................................................TTTATTTGAATTGTTCTACC.................................................................................................... 20 0 2 1.50 3 2 0 0 0 0 0 1 0 0
.......................................................................................................................................TTTGAATTGTTCTACCTGTA................................................................................................ 20 0 2 1.50 3 1 2 0 0 0 0 0 0 0
.........................................................................................................................................TGAATTGTTCTACCTGTAACA............................................................................................. 21 0 2 1.50 3 2 0 0 0 1 0 0 0 0
..............................................................................................................................................TGTTCTACCTGTAACATCAAC........................................................................................ 21 0 2 1.50 3 3 0 0 0 0 0 0 0 0
...................................................................................................................................................................GTTAAGCCCATGCCTTAGACA................................................................... 21 0 2 1.50 3 3 0 0 0 0 0 0 0 0
..................................................................................................................................................................CGTTAAGCCCATGCCTTAGAC.................................................................... 21 0 2 1.00 2 2 0 0 0 0 0 0 0 0
.....................................................................................................................................TATTTGAATTGTTCTACCTGT................................................................................................. 21 0 2 1.00 2 1 1 0 0 0 0 0 0 0
.....................................................................................................................................TATTTGAATTGTTCTACCTG.................................................................................................. 20 0 2 1.00 2 0 2 0 0 0 0 0 0 0
..............................................................................................................................................................TCAACGTTAAGCCCATGCCTT........................................................................ 21 0 2 1.00 2 2 0 0 0 0 0 0 0 0
.................................................................................................................TTCGGGCATTTGATTACGTTT..................................................................................................................... 21 0 2 1.00 2 2 0 0 0 0 0 0 0 0
...................................................................................................................................TTTATTTGAATTGTTCTAC..................................................................................................... 19 0 2 1.00 2 0 2 0 0 0 0 0 0 0
.........................................................................................................................................................TAACATCAACGTTAAGCCCAT............................................................................. 21 0 2 1.00 2 2 0 0 0 0 0 0 0 0
...................................................................................................................................................TACCTGTAACATCAACGTTAA................................................................................... 21 0 2 1.00 2 2 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TAATAAACACAGATAATATA............... 20 0 2 1.00 2 0 1 0 1 0 0 0 0 0
....................................................................................................................................................................................................................................ATAATATAGTTGGAAGTTCTC.. 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0
...........................................................................................TTATAATACACCCAGCGATTAATTCGG..................................................................................................................................... 27 0 2 0.50 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................ATCAACGTTAAGCCCATGCC.......................................................................... 20 0 2 0.50 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................AACATCAACGTTAAGCCCATGC........................................................................... 22 0 2 0.50 1 0 0 0 0 0 1 0 0 0
....................................AGGTTCGCCCACCTGTGAGAG.................................................................................................................................................................................................. 21 1 2 0.50 1 1 0 0 0 0 0 0 0 0
.............TACTCATTGGCCTGCTGGT........................................................................................................................................................................................................................... 19 0 2 0.50 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TAGAGTAAGTTACATTTCGCA......................................... 21 1 2 0.50 1 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................ACATCAACGTTAAGCCCATGC........................................................................... 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0
........GGGCATACTCATTGGCCTGC............................................................................................................................................................................................................................... 20 0 2 0.50 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................CAACGTTAAGCCCATGCCTT........................................................................ 20 0 2 0.50 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................ACAGATAATATAGTTGGAAGT...... 21 0 2 0.50 1 0 0 1 0 0 0 0 0 0
......................................................................................................................................ATTTGAATTGTTCTACCTGTAA............................................................................................... 22 0 2 0.50 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................CTTAGACACACACTAGAGTAA...................................................... 21 0 2 0.50 1 0 0 1 0 0 0 0 0 0
..............................GTGCTAAAGTTCGCCCACCTGT....................................................................................................................................................................................................... 22 0 2 0.50 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................TCAACGTTAAGCCCATGCCT......................................................................... 20 0 2 0.50 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................AATTGTTCTACCTGTAACATC........................................................................................... 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0
...............................................................................................AATGTACCCAGCGATTAATTCGGGC................................................................................................................................... 25 2 2 0.50 1 0 0 0 0 0 1 0 0 0
.......................................................................................................................................................................................................TACATTTCGCATTATGATAAT............................... 21 1 2 0.50 1 1 0 0 0 0 0 0 0 0
.........GGCATACTCATTGGCCTGCTGGTGCT........................................................................................................................................................................................................................ 26 0 2 0.50 1 1 0 0 0 0 0 0 0 0
......................................GTTCGCCCACCTGTGAGAGCCA............................................................................................................................................................................................... 22 0 2 0.50 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................ACATCAACGTTAAGCCCATGCCTTAGAC.................................................................... 28 0 2 0.50 1 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................TGTAACATCAACGTTAAGCCC............................................................................... 21 0 2 0.50 1 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................CAACGTTAAGCCCATGCCTTA....................................................................... 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................CACTAGAGTAAGTTATATTTCG........................................... 22 0 2 0.50 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................GTTAAGCCCATGCCTTAGAC.................................................................... 20 0 2 0.50 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................TCTACCTGTAACATCAACGT...................................................................................... 20 0 2 0.50 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................GTTACATTTCGCATTATGAT.................................. 20 1 2 0.50 1 1 0 0 0 0 0 0 0 0
.............................................................................................................TTAATTCGGGCATTTGATTACG........................................................................................................................ 22 0 2 0.50 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................GTTATATTTCGCATTATGAT.................................. 20 0 2 0.50 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................AATTGTTCTACCTGTAACAA............................................................................................ 20 1 2 0.50 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................AACATCAACGTTAAGCCCATG............................................................................ 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................TTTGATTACGTTTATTTGAAT............................................................................................................. 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................CGTTAAGCCCATGCCTTAGA..................................................................... 20 0 2 0.50 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................AGACACACACTAGAGTAAGTT................................................... 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0
........................................................................................................................ATTTGATTACGTTTATTTGAA.............................................................................................................. 21 0 2 0.50 1 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................TCAACGTTAAGCCCATGCA.......................................................................... 19 1 2 0.50 1 0 0 0 0 1 0 0 0 0
....................................................................................................................................TTATTTGAATTGTTCTACCT................................................................................................... 20 0 2 0.50 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................ATAAACACAGATAATATAGTTGG.......... 23 0 2 0.50 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................TTTGAATTGTTTTACCTGTAAA.............................................................................................. 22 2 2 0.50 1 0 1 0 0 0 0 0 0 0
......................................................................................................................................ATTTGAATTGTTCTACCTGTA................................................................................................ 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................CTTGAATTGTTCTACCTGTAACA............................................................................................. 23 1 2 0.50 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................TTGATTACGTTTATTTGAATT............................................................................................................ 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................CTCAACGTTAAGCCCATGCCTT........................................................................ 22 1 2 0.50 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................TTAAGCCCATGCCTTAGACA................................................................... 20 0 2 0.50 1 1 0 0 0 0 0 0 0 0
...................................................TTAGAGCCACTGGAAGCGGAC................................................................................................................................................................................... 21 1 2 0.50 1 0 0 0 1 0 0 0 0 0
..................................................................................................................................................CTACCTGTAACATCAACGTT..................................................................................... 20 0 2 0.50 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................AGACACACACTAGAGTAAGTA................................................... 21 1 2 0.50 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TACATTTCGCATTATGATA................................. 19 1 2 0.50 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................CTTAGACACACACTAGAG......................................................... 18 0 2 0.50 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................TAATATAGTTGGAAGTTCTCC. 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................ACACACACTAGAGTAAGTTACA................................................ 22 1 2 0.50 1 0 0 1 0 0 0 0 0 0
........................................................................CCTTGTTTTTGTTCCAAAGTT.............................................................................................................................................................. 21 1 2 0.50 1 1 0 0 0 0 0 0 0 0
.............................................................................................................TTAATTCGGGCATTTGATTGC......................................................................................................................... 21 1 2 0.50 1 0 0 0 0 0 0 0 1 0
.................................................................................................................TTCGGGCATTTGATTACGTTTA.................................................................................................................... 22 0 2 0.50 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................GTTTGTTTGAATTGTTCTACC.................................................................................................... 21 1 2 0.50 1 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................................................................AAACACAGATAATATAGTTGG.......... 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................ATCAACGTTAAGCCCATGCCT......................................................................... 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0
..................................................................................................................TCGGGCATTTGATTACGTTTATT.................................................................................................................. 23 0 2 0.50 1 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................TCAACGTTGAGCCCATGCCTT........................................................................ 21 1 2 0.50 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................AGCCCATGCCTTAGACACAC................................................................ 20 0 2 0.50 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................CTTAGACACACACTAGAGTA....................................................... 20 0 2 0.50 1 0 0 0 0 0 0 1 0 0
..............................................................................................................................TTACGTTTATTTGAATTGTTC........................................................................................................ 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0
.................................................................................................TGTACCCAGCGATTAATTCGGG.................................................................................................................................... 22 2 2 0.50 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................CGTTTATTTGAATTGTTCTAC..................................................................................................... 21 0 2 0.50 1 0 1 0 0 0 0 0 0 0
.........................................................................................................................................TGAATTGTTCTACCTGTAGC.............................................................................................. 20 1 2 0.50 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................CTAGAGTAAGTTATATTTCGC.......................................... 21 0 2 0.50 1 0 0 0 0 0 0 0 0 1
...................................................................................................................CGGGCATTTGATTACGTTTATT.................................................................................................................. 22 0 2 0.50 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................CTAGAGTAAGTTACATTTCGC.......................................... 21 1 2 0.50 1 1 0 0 0 0 0 0 0 0
.....................................................AGAGCCACTGGAAGCGGAC................................................................................................................................................................................... 19 0 2 0.50 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................TTAGACACACACTAGAGTAA...................................................... 20 0 2 0.50 1 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................CCTGTAACATCAACGTTAAG.................................................................................. 20 0 2 0.50 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................CCTTAGACCAACTCTAGAGT........................................................ 20 3 3 0.33 1 1 0 0 0 0 0 0 0 0
...........................................................................................................GATGAACTCGGGGATTTGATT........................................................................................................................... 21 3 5 0.20 1 0 0 1 0 0 0 0 0 0
.TCGGGGTGGGCATACTCATT...................................................................................................................................................................................................................................... 20 3 6 0.17 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................CAGATAATATAGTTGGAAAATT.... 22 3 7 0.14 1 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

AACCTCAACCCGTATGAGTAACCGGACGACCACGATTTCAAGCGGGTGGACACTCTCGGTGACCTTCGCCTGGGAACAAAAATAAGGTTTCAATATTATGTGGGTCGCTAATTAAGCCCGTAAACTAATGCAAATAAACTTAACAAGATGGACATTGTAGTTGCAATTCGGGTACGGAATCTGTGTGTGATCTCATTCAATATAAAGCGTAATACTATTATTTGTGTCTATTATATCAACCTTCAAGAGGC
*****************************************************((......(((((..(((..........((((((....)).))))..)))...)))))..))**************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902011
testis
 V112
male body		 GSM343916
embryo
 GSM444067
head
 M022
male body		 M059
embryo
 SRR902010
ovaries
 M062
head
 SRR902012
CNS imaginal disc
...........................................................................................................................................................................GTACGGAATCTGTGTGTGATC........................................................... 21 0 2 9.00 18 10 0 7 0 1 0 0 0 0 0
...................................................................................................................................................ATGGACATTGTAGTTGCAATT................................................................................... 21 0 2 4.50 9 8 0 1 0 0 0 0 0 0 0
.................................................................................................................................................AGATGGACATTGTAGTTGCAA..................................................................................... 21 0 2 4.50 9 3 4 1 0 0 0 0 1 0 0
....................................................................................................................................................................................CTGTGTGTGATCTCATTCAAT.................................................. 21 0 2 4.00 8 6 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................GTTGCAATTCGGGTACGGAAT....................................................................... 21 0 2 3.50 7 6 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................GGAATCTGTGTGTGATCTCAT....................................................... 21 0 2 2.50 5 2 3 0 0 0 0 0 0 0 0
......................................................................................................................................................................TTCGGGTACGGAATCTGTGT................................................................. 20 0 2 2.00 4 3 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................ATCTGTGTGTGATCTCATTCA.................................................... 21 0 2 2.00 4 4 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................CAATTCGGGTACGGAATCTGT................................................................... 21 0 2 2.00 4 4 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................CGGGTACGGAATCTGTGTG................................................................ 19 0 2 2.00 4 4 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................GGGTACGGAATCTGTGTGTG.............................................................. 20 0 2 2.00 4 3 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................TGTGTGTGATCTCATTCAATA................................................. 21 0 2 2.00 4 4 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................GGTACGGAATCTGTGTGTGAT............................................................ 21 0 2 2.00 4 4 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................GTGTGATCTCATTCAATGTAA.............................................. 21 1 2 1.50 3 3 0 0 0 0 0 0 0 0 0
................................................................................................................................................AAGATGGACATTGTAGTTGCA...................................................................................... 21 0 2 1.50 3 2 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................TACGGAATCTGTGTGTGATC........................................................... 20 0 2 1.50 3 3 0 0 0 0 0 0 0 0 0
...............................................................................................................................................CAAGATGGACATTGTAGTTGC....................................................................................... 21 0 2 1.50 3 2 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................GGTACGGAATCTGTGTGTGA............................................................. 20 0 2 1.50 3 3 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................TTGTAGTTGCAATTCGGGTAC............................................................................ 21 0 2 1.50 3 1 0 2 0 0 0 0 0 0 0
..............................................................................................................................................ACAAGATGGACATTGTAGTT......................................................................................... 20 0 2 1.50 3 1 0 1 0 0 1 0 0 0 0
................................................................................................................................................................................GAATCTGTGTGTGATCTCATT...................................................... 21 0 2 1.50 3 3 0 0 0 0 0 0 0 0 0
.............................................................................................................................................AACAAGATGGACATTGTAGTT......................................................................................... 21 0 2 1.50 3 1 0 1 1 0 0 0 0 0 0
...............................................................................................................................................CAAGATGGACATTGTAGTT......................................................................................... 19 0 2 1.50 3 0 3 0 0 0 0 0 0 0 0
................................................................................................................................................................TTGCAATTCGGGTACGGAATC...................................................................... 21 0 2 1.00 2 1 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................CGGGTACGGAATCTGTGTGTG.............................................................. 21 0 2 1.00 2 2 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................GCGTAATACTATTATTTGTGT........................ 21 0 2 1.00 2 1 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................GGGTACGGAATCTGTGTGTGA............................................................. 21 0 2 1.00 2 2 0 0 0 0 0 0 0 0 0
..................................................................................................................................................GATGGACATTGTAGTTGCAAT.................................................................................... 21 0 2 1.00 2 0 2 0 0 0 0 0 0 0 0
..........................................................................................................................................................TTGTAGTTGCAATTCGGGTA............................................................................. 20 0 2 1.00 2 2 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................GTACGGAATCTGTGTGTGA............................................................. 19 0 2 1.00 2 2 0 0 0 0 0 0 0 0 0
...................................................................................................................GCCCGTAAACTAATGCAAATA................................................................................................................... 21 0 2 1.00 2 1 0 1 0 0 0 0 0 0 0
.................................................................................................................................................AGATGGACATTGTAGTTGC....................................................................................... 19 0 2 1.00 2 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................TACGGAATCTGTGTGTGATCT.......................................................... 21 0 2 1.00 2 2 0 0 0 0 0 0 0 0 0
.......................................................................................................................................AAACTTAACAAGATGGACAT................................................................................................ 20 0 2 1.00 2 0 2 0 0 0 0 0 0 0 0
........................................................................................................................................................CATTGTAGTTGCAATTCGGGT.............................................................................. 21 0 2 1.00 2 1 0 1 0 0 0 0 0 0 0
..................................................................................................................................................GATGGACATTGTAGTTGCAA..................................................................................... 20 0 2 1.00 2 0 2 0 0 0 0 0 0 0 0
.......................................................................................................................................................................TCGGGTACGGAATCTGTGTG................................................................ 20 0 2 1.00 2 1 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................TAGTTGCAATTCGGGTACGGA......................................................................... 21 0 2 1.00 2 0 2 0 0 0 0 0 0 0 0
............................................................................................................................................TAACAAGATGGACATTGTAGT.......................................................................................... 21 0 2 1.00 2 0 0 0 0 0 0 0 2 0 0
........................................................................................................................................................................CGGGTACGGAATCTGTGTGT............................................................... 20 0 2 1.00 2 2 0 0 0 0 0 0 0 0 0
...................................................................................................................................................ATGGACATTGTAGTTGCAAT.................................................................................... 20 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................TTTCGGGTACGGAATCTGTGTGT............................................................... 23 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................AATGGACATTGTAGTTGCAATT................................................................................... 22 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................AGCGTAATACTATTATTTGTG......................... 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................ACGGGTACGGAATCTGTGTGTGATCTCA........................................................ 28 1 2 0.50 1 0 0 0 0 0 0 1 0 0 0
....................................................................................................................................................TGGACGTTGTAGTTGCAGTTC.................................................................................. 21 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................GCGTAATACTATTATTTGTGTCCAC.................... 25 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................CTATTATTTGTGTCTATTATA................ 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................TCATTCAATATAAAGCGTAAT...................................... 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................ACTTAACAAGATGGACATTGT............................................................................................. 21 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................GGACATTGTAGTTGCAATT................................................................................... 19 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TAAAGCGTAATACTATTATTT............................ 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................AGTTGCAATTCGGGTACGGA......................................................................... 20 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................CGGAATCTGTGTGTGATCTCA........................................................ 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................GGACATTGTAGTTGCAATTC.................................................................................. 20 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................ATTCAATGTAAAGCGTAATACTAT................................. 24 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................CGTAATACTATTATTTGTGTC....................... 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TAAAGCGTAATACTATTAT.............................. 19 0 2 0.50 1 0 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................ATTGTAGTTGCAATTCGGGTA............................................................................. 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................CCCAAGATGGACATTGTAGTT......................................................................................... 21 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TGTACGGAATCTGTGTGTGAT............................................................ 21 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................AATAAACTTAACAAGATGGACA................................................................................................. 22 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................GGTACGGAATCTGTGTGTG.............................................................. 19 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................CCGTAAACTAGTGCAAATGAA................................................................................................................. 21 2 2 0.50 1 0 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................................................TGTGATCTCATTCAATATAAATTC.......................................... 24 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................TCGGGTACGGAATCTGTGT................................................................. 19 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................TCTCATTCAATGTAAAGCGTAATACT................................... 26 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................AAAGCCCGTAAACTAATGCAAAT.................................................................................................................... 23 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................AATCTGTGTGTGATCTCATTC..................................................... 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................ACGGAATCTGTGTGTGATCTC......................................................... 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................GGAATCTGTGTGTGATCTCA........................................................ 20 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................CGGAATCTGTGTGTGATCTC......................................................... 20 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................TTCGGGTACGGAATCTGTGTGT............................................................... 22 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................ATTCAATATAAAGCGTAATA..................................... 20 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................TAAACTTAACAAGATGGACAT................................................................................................ 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................CTTAACAAGATGGACATT............................................................................................... 18 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................................CTTAACAAGATGGACATTGTA............................................................................................ 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................TTCGGGTACGGAATCTGTGTG................................................................ 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................GCCCGTAAACTAATGCAAAT.................................................................................................................... 20 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................ATCTGTGTGTGATCTCATTC..................................................... 20 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................GTACGGAATCTGTGTGTGAT............................................................ 20 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................TTTTGCAATTCGGGTACGGAATC...................................................................... 23 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................ACAAGATGGACATTGTAGTTG........................................................................................ 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................CCTGTGTGTGATCTCATTC..................................................... 19 1 2 0.50 1 0 0 0 0 0 0 1 0 0 0
...................................................................................................................................................................................................................ATACTATTATTTGTGTCTATT................... 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................GCGTAATACTATTATTTGTG......................... 20 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TGTGTGATCTCATTCAATATA............................................... 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................ATACTATTATTTGTGTCTAT.................... 20 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................AACAAGATGGACATTGTAGT.......................................................................................... 20 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0
......................................................................................................................CGTAAACTAATGCAAATAAAC................................................................................................................ 21 0 2 0.50 1 0 0 0 0 0 0 0 0 1 0
..............................................................................................................................................................................TGGAATCTGTGTGTGATCTCAT....................................................... 22 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................CAAGATGGACATTGTAGTTGCAAT.................................................................................... 24 0 2 0.50 1 0 0 0 0 0 0 0 1 0 0
...............................................................................................................................................................................GGAATCTGTGTGTGATCT.......................................................... 18 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................GGGTACGGAATCTGTGTGT............................................................... 19 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................GACATTGTAGTTGCAATTCGG................................................................................ 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TCAATATAAAGCGTAATACTA.................................. 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................ATTCGGGTACGGAATCTGTG.................................................................. 20 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0
...............................................................................................................................................CAAGGTGGACATTGTAGTTGC....................................................................................... 21 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................CAAGATGGACATTGTACTT......................................................................................... 19 1 2 0.50 1 0 0 0 0 0 0 0 0 1 0
........................................................................................................................................AACTTAACAAGATGGACATT............................................................................................... 20 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................................ACGGAATCTGTGTGTGATCTCATT...................................................... 24 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TGTACGGAATCTGTGTGTGA............................................................. 20 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................GCAATTCGGGTACGGAATCT..................................................................... 20 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0
................................................................................................................................TGCAAATAAACTTAACAAGAT...................................................................................................... 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................GTGTGATCTCATTCAATGTA............................................... 20 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TGTGTGTGATCTCATTCAATG................................................. 21 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................TTAACAAGATGGACATTGTAGT.......................................................................................... 22 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................TCTGTGTGTGATCTCATTC..................................................... 19 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................ACAAGATGGACATTGTAGTTGCAATTC.................................................................................. 27 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................ATTCGGGTACGGAATCTGTGT................................................................. 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................TTAACAAGATGGACATTGTAGTTGCAAT.................................................................................... 28 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................AAGATGGACATTGTAGTT......................................................................................... 18 0 2 0.50 1 0 0 0 0 0 0 0 0 0 1
...........................................................................................................................................TTAACAAGATGGACATTGTAGTTGCAATT................................................................................... 29 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................ATCTGTGTGTGATCTCATTCAATG................................................. 24 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................ATTGTAGTTGCAATTCGGGT.............................................................................. 20 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................GCAATTCGGGTACGGAAT....................................................................... 18 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................AGTTGCAATTCGGGTACGGAAT....................................................................... 22 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................AAACTTAACAAGATGGACATT............................................................................................... 21 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................................................TGTGATCTCATTCAATGTAAA............................................. 21 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................TTGCAATTCGGGTACGGAAT....................................................................... 20 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................GGACATTGTAGTTGCAATTCG................................................................................. 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................TCGGGTACGGAATCTGTGTGT............................................................... 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................ATAAACTTAACAAGATGGACA................................................................................................. 21 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................TGTAGTTGCAATTCGGGTACG........................................................................... 21 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................TTGGGTACGGAATCTGTGTG................................................................ 20 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................TGTCTATTATATCAACCTTCA...... 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................TCATTCAATGTAAAGCGTAAT...................................... 21 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................CAAGGTGGGCATTGTAGTTGC....................................................................................... 21 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................TAAGCGCTCAAACTAATGCA....................................................................................................................... 20 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0
.................................................................................ATAAGGGTCCGATATTATG....................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.......................TGACGACGAAGATTTCAAG................................................................................................................................................................................................................. 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................TCATGTGGGTCGCAAATA.......................................................................................................................................... 18 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 2:11980276-11980526 - dps_481 TTGGAGTTGGGCATACTCATTGGCCTGCTGGTGCTAAAGTTCGCCCACCTGTGAGAGCCACTGG-------AAGCGGACCCTTGTTTTTATTCCAAAGTTATA-------------------------------------------------------------------------------------------------------------------------ATACACCCAGC-GATTAAT-------------------------------TCGGGCATTTGATTACGTTTATTTG-------AA--TTG-TTCTA-CCTGTAACA--TCAACGTTAAGCCCATGCCTTAGACACACACTAGAGTAAGTTATATTTCGCATT------------------------------------A----TGATAATA--AACACAGATAATATAG----------TTGGAAGTTCTCCG
droPer2 scaffold_0:8526049-8526299 + TTGGAGTTGGGCATACTCATTGGCCTGCTGGTGCTAAAGTTCGCCCACCTGTGAGAGCTACTGG-------AAGTGGACCCTTGTTTTTATTCCAAAGTTATA-------------------------------------------------------------------------------------------------------------------------ATGTACCCAGC-GATTAAT-------------------------------TCGGGCATTTGATTACGTTTATTTG-------AA--TTG-TTCTA-CCTGTAACA--TCAACGTTAAGCCCATGCCTTAGACACACACTAGAGTAAGTTACATTTCGCATT------------------------------------A----TAATAATA--AACACAGATAATATAG----------TTGGAAGTTCTCCG
droWil2 scf2_1100000004943:10814271-10814480 - TTAGAATTGGGCATACTTGTCGGTCTGCTAGTGCTTAAATTTGTTAAATAATTA---TTACAGA-------GAGTATGTATTT---------------------------------------------------------------------------------------------------------------------------------------------ATGTATATAGA-AATTTGT-----TAAAGGCTTGATAATATTGACTAAAGGTGGACAAATGATTATGTTCGT-------------TTT---T-A-------------------TTAAAACCATGCCTTAGACATTTA---GATTAAGTTATGATATT--TA------------------------------------G----TTATAATA-AAACACAGCTAAAA---------------------------
droVir3 scaffold_12855:4667471-4667722 - CTGGAGGTGGCCATACTCATCGGCCTGCTGGTTTTGAAGTTTGCCCATCTGTGAAGGA--CGGGCGGCATCAATCGAA------TCATTATTCCAAAGTTGAG-------------------------------------------------------------------------------------------------------------------------ATCTATGC-GT-GGTGGATATGGA----------------------------CTTTTATTAAATATGTTTATTTT---------TTTCTTCT-AA--------CA--TTCATGTTAAACCCATGCCTTAGACATATA---G----------AGT-------------TAAGTTACTATAAATCGT------TTAT-GATCGATATTAATA-AAACACAGCTAAAAGTT---ATG--------GAGATTTTTT
droMoj3 scaffold_6540:9029854-9030094 - TTAGAAGTAGCCATACTCATTGGCCTGCTGATCTTAAAGTTCGCCCATCTATAGAGGC--G---AATCA----------------TTGAATTCCAAAGCTATA------------------------------------------------------------------------------------------------------------------------------TTCGGAATATGAATATGGA-----------------------------TTTTATTAAGTATTTTGTTTTG---------TCTTATCT-AA--------CA--TTCATTTTAAACCCATGCCTTAGACATATG---T----------A-TATGTATATAGAGTTAGGATAATGTAAATCGT------ATATGGAGCGATATTAATAAAAACACAGCTAA-------------------CAGTTATGAA
droGri2 scaffold_14906:7185398-7185629 - CTGGAGGTGGCCATCCTCATTGGCCTCCTAGTGCTGAAGTTTGCACATCTGTAAA-----------------------------------TTCCAAAGATATC-------------------------------------------------------------------------------------------------------------------------CTGTATTT-GT-ATTGAAT--------------------------------ATGGACTTTTATTTAGTATATCTC------------TG-TTTTG-CATCTAACAATTCTAGGTTAAGAACATGCCTCAGACATGTA---G----------GATATT--G------------TGTTGTAAATGGTACATATATAT-AATCGATATTAATA-AAACACAGCTAAAAATT---ATG-------GAGATTCT-CT
droAna3 scaffold_13340:9878093-9878420 - CTGGAAGTGGGCATCCTTATCGGGCTGCTGGTGCTTAAATTCGTGCACCTGTAGCTCTGAA---GGTTA----------------TTCTATTCCAAAGACACGCAAGATGGTGGTCGTATTTAAATCGTTATAACTTGTATCCATATTGCCTTAACTGTAAGCTACTATATAATAATAAATTTTTGTTTTTTCTCACAAAAAAAAAACAAATTTATTAATTATGATATACCCGGC-TATAAA--------------------------------TCGGGCTAATGATTATGTTTATTCA----A----TGTTTGGT-ATAA-------------------CGTCAATGCCTTAGACACCTA---A----------AATATGTATT-----------------------------------------TGATAATA-AAACACAGATAAAATTGGAACTGGAAGT-------------
droBip1 scf7180000396691:2578651-2578784 - TTATG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATACCCAGC-TATAAA--------------------------------ACGGGCTATTGATTATGTTTATTCA----A----TGTTTGGT-ATAA-------------------CGTCAATGCCTTAGACACCTA---A----------AATATGTATT-----------------------------------------TGATAATA-AAACACAGATAAAATTGGAACTGG-------AAGTCCTCAT
droKik1 scf7180000302639:2545358-2545520 + CTGGAGGTGGGCATTCTGGTTGGTCTGTTGGTGCTGAAGTTTGCCCACCTGTGAGCCG--C---AGCGA----------------TTGTATTCCAAAGTTATA----------------------------------------------------------------------------------------------------------------------------------GC-CACGCA--------------------------------TT-ATCGATGGACTATTTTTATGT----TTAAAA--T-TGTT-GT-----------------GTCAACACTATGCCTTAGCCACTAA---CATT-------AAGTTGT---------------------------------------------------------------------------------------------A
droFic1 scf7180000453800:701843-701982 + TTAGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATAC-CAGT-GATTAA--------------------------------ACGGGTAGTTGAATATGTTTATTCA---------TGTTTGCT-AAAA-------------------CGTTAATGCCTTAGACATCTA---T----------AATATGTATT------------------------------------A----TGGTAGTA-AAACACAGATAAAATCGGAACTGGACGTCGGAAGCTCTGCA
droEle1 scf7180000491008:2023218-2023350 - CTGGAGCTGGGCATTCTCGTCGGGTTGCTGGTGCTTAAGTTCGCTCACCTGTGAGCGG--C---AGCGA----------------TTTTATTCCAAAGCTATA----------------------------------------------------------------------------------------------------------------------------------GC-CACGAA--------------------------------TCGGGCGTTGGACTATATATATCT----TTT-AA--C-CGTT-ACAA-------------------CTATA-----------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000780017:26461-26634 + CTGGAGGTGGGCATTCTCGTCGGCTTGCTGGTGCTGAAGTTTGCTCACCTGTGAGCAG--T---TGCCA----------------TTTTATTCCAAAGATATT----------------------------------------------------------------------------------------------------------------------------------GC-CACGAA--------------------------------TCGGACAGTGGAGTATATGTATATAATTATT-AA---TCGTT-ACAA-------------------AAATATTGCCTTAGATACTGA---T----------AAGTTATGCC------------------------------------A----C-----------------------------------------ATTTTATG
droBia1 scf7180000299102:1732725-1732886 - CTGGAGGTGGGCATTCTCGTAGGGCTGCTGGTGCTGAAGTTCGCCAAACTGTGAGCAG--C---CGCCA----------------CACTATTCCAAAGCTATG----------------------------------------------------------------------------------------------------------------------------------GC-CCCGAA--------------------------------TCGGGCGTGGGACTATAAATATATATGTTTT-AA--T-CGTT-ACAA-------------------AAACTTTGCCTTAGTTACGAA---T----------AAGTTATA---------------------------------------------------------------------------------------------
droTak1 scf7180000415878:608523-608712 - CTGGAGGTGGGCATTCTCGTCGGGCTGCTGGTGCTCAAGTTCGCTCACCTCTGAGCGG--A---TGTCA----------------CTCTATTCCAAAGCTATA----------------------------------------------------------------------------------------------------------------------------------GC-CACGAA--------------------------------TCGGGCGTTGTTCTATGTATATGT----ATT-AA--T-TGTT-GCGA-------------------CTACTTTGCCTTAGTTATAAA---T----------AAGTTATACC------------------------ACATGTATAT-AA----AGGAAATG----AACAAATA----------------------------TA
droEug1 scf7180000409802:1818847-1819005 - TTGGAGGTGGGAATCCTTGCCGGGTTGCTGGTTCTAAAGTTCGTTAAATTTTAAGCGCTAG---TGCCA----------------TTTTATTCCAAAGTTATT----------------------------------------------------------------------------------------------------------------------------------GC-AGGAAA--------------------------------TCGAGCAATAGACTATGTATTTGT----ATT-AA--T-CGTT-ACGA-------------------CTACTTTGCCTTAGATACCAA---T----------AAGTTAT----------------------------------------------------------------------------------------------
dm3 chr3R:14226093-14226233 + TTAGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATACCCAGC-GATGAA--------------------------------TCGGGTGGTTGATTATGTTTATTCA---------TGTTGGCT-AAAG-------------------CGTTAATGCCTTAGACGTCTA---T----------AATATGTATT------------------------------------A----TGGTAGTA-AAACACAGATAAAATCGGGTCTGGACATCGGAAGCTCTGCA
droSim2 3r:7050513-7050659 - CCAGTTTTAGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATACCCAGC-GATGAA--------------------------------TCGGGTGCTTGATTATGTTTATTCA---------TGTTGGCT-AAAG-------------------CGTTAATGCCTTAGACGTCTA---T----------AATATGTATT------------------------------------A----TGGTAGTA-AAACACAGATAAAATCGGATCTGGACATCGGAAGCTCTGCA
droSec2 scaffold_5:5668815-5668955 - TTAGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATACCCAGC-GACGAA--------------------------------TCGGGTGCTTGATTATGTTTATTCA---------TGTTGGCT-AAAG-------------------CGTTAATGCCTTAGACGTCTA---T----------AATATGTATT------------------------------------A----TGGTAGTA-AAACACAGATAAAATCGGATCTGGAAATCGGAAGCTCTGCA
droYak3 3R:2847379-2847513 + T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATACCCAGC-GATGAA--------------------------------TAGGGTGCTTGATTATGTTTATTCA---------TGTTGACT-AAAG-------------------CGTTAAAGGCTTAGACGTCTA---T----------AATATGTATA------------------------------------A----TGGTAGTA-AAACACAGATAAAATCGAAGCTGGACATCGGAAGCTCTGCA
droEre2 scaffold_4770:7418084-7418224 - TTAGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAACCCAGC-GATGAA--------------------------------TCGGGCGCTTGATTATGTTTATTCA---------TGTTGACT-AAAG-------------------CGTTGATGCCTTAGACGTCTA---T----------AATATGTATA------------------------------------A----TGGTAGTA-AAACACAGATAAAATCGGAGCTGGACATCGGAAGCACTGCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
TTGGAGTTGGGCATACTCATTGGCCTGCTGGTGCTAAAGTTCGCCCACCTGTGAGAGCCACTGG-------AAGCGGACCCTTGTTTTTATTCCAAAGTTATA-------------------------------------------------------------------------------------------------------------------------ATACACCCAGC-GATTAAT-------------------------------TCGGGCATTTGATTACGTTTATTTG-------AA--TTG-TTCTA-CCTGTAACA--TCAACGTTAAGCCCATGCCTTAGACACACACTAGAGTAAGTTATATTTCGCATT------------------------------------A----TGATAATA--AACACAGATAATATAG----------TTGGAAGTTCTCCGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................................................................................................................................................................................................................................................................................................TTG-------AA--TTG-TTCTA-CCTGTAAC....................................................................................................................................................2125.00100300000070
...........................................................................................................................................................................................................................................................................................................................TCTA-CCTGTAACA--TCAACGTT.........................................................................................................................................2124.0080500010020
..............................................................................................................................................................................................................................................................................................................................................................TTAGACACACACTAGAGTAAG.........................................................................................................2122.5050200012000
..........................................................................................................................................................................................................................................................................................................................TTCTA-CCTGTAACA--TCAACGT..........................................................................................................................................2122.0040300010000
....................................................................................................................................................................................................................................................................................................TTATTTG-------AA--TTG-TTCTA-CCTG........................................................................................................................................................2122.0040200000020
.......................................................................................................................................................................................................................................................................................................TTTG-------AA--TTG-TTCTA-CCTGTAA.....................................................................................................................................................2121.5030300000000
...................................................................................................................................................................................................................................................................................................TTTATTTG-------AA--TTG-TTCTA-CCT.........................................................................................................................................................2121.5030300000000
...................................................................................................................................................................................................................................................................................................................................GTAACA--TCAACGTTAAGCCC...................................................................................................................................2021.5030201000000
.........................................................................................................................................................................................................................................................................................................TG-------AA--TTG-TTCTA-CCTGTAAC....................................................................................................................................................2021.5030300000000
...................................................................................................................................................................................................................................................................................................................................GTAACA--TCAACGTTAAGCCCA..................................................................................................................................2121.5030300000000
..........................................................................................................................................................................................................................................................................................................................................................TGCCTTAGACACACACTAGAG.............................................................................................................2121.5030300000000
...................................................................................................................................................................................................................................................................................................................................................AAGCCCATGCCTTAGACACAC....................................................................................................................2121.5030111000000
...................................................................................................................................................................................................................................................................................................TTTATTTG-------AA--TTG-TTCTA-CC..........................................................................................................................................................2021.5030200100000
.......................................................................................................................................................................................................................................................................................................TTTG-------AA--TTG-TTCTA-CCTGTA......................................................................................................................................................2021.5030100000020
.........................................................................................................................................................................................................................................................................................................TG-------AA--TTG-TTCTA-CCTGTAACA--.................................................................................................................................................2121.5030200010000
.......................................................................................................................................................................................................................................................................................................................TG-TTCTA-CCTGTAACA--TCAAC............................................................................................................................................2121.5030300000000
................................................................................................................................................................................................................................................................................................................................................GTTAAGCCCATGCCTTAGACA.......................................................................................................................2121.5030300000000
...............................................................................................................................................................................................................................................................................................................................................CGTTAAGCCCATGCCTTAGAC........................................................................................................................2121.0020200000000
.....................................................................................................................................................................................................................................................................................................TATTTG-------AA--TTG-TTCTA-CCTGT.......................................................................................................................................................2121.0020100000010
.....................................................................................................................................................................................................................................................................................................TATTTG-------AA--TTG-TTCTA-CCTG........................................................................................................................................................2021.0020000000020
...........................................................................................................................................................................................................................................................................................................................................TCAACGTTAAGCCCATGCCTT............................................................................................................................2121.0020200000000
..................................................................................................................................................................................................................................................T-------------------------------TCGGGCATTTGATTACGTTT......................................................................................................................................................................................2121.0020200000000
...................................................................................................................................................................................................................................................................................................TTTATTTG-------AA--TTG-TTCTA-C...........................................................................................................................................................1921.0020000000020
....................................................................................................................................................................................................................................................................................................................................TAACA--TCAACGTTAAGCCCAT.................................................................................................................................2121.0020200000000
.............................................................................................................................................................................................................................................................................................................................TA-CCTGTAACA--TCAACGTTAA.......................................................................................................................................2121.0020200000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TAATA--AACACAGATAATATA.........................2021.0020001000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATATAG----------TTGGAAGTTCTC..2120.5010100000000
..................................................................................................TTATA-------------------------------------------------------------------------------------------------------------------------ATACACCCAGC-GATTAAT-------------------------------TCGG......................................................................................................................................................................................................2720.5010100000000
........................................................................................................................................................................................................................................................................................................................................A--TCAACGTTAAGCCCATGCC..............................................................................................................................2020.5010100000000
.....................................................................................................................................................................................................................................................................................................................................AACA--TCAACGTTAAGCCCATGC...............................................................................................................................2220.5010010000000
.............TACTCATTGGCCTGCTGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010100000000
......................................................................................................................................................................................................................................................................................................................................ACA--TCAACGTTAAGCCCATGC...............................................................................................................................2120.5010100000000
........GGGCATACTCATTGGCCTGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.5010100000000
............................................................................................................................................................................................................................................................................................................................................CAACGTTAAGCCCATGCCTT............................................................................................................................2020.5010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGATAATATAG----------TTGGAAGT......2120.5010000001000
......................................................................................................................................................................................................................................................................................................ATTTG-------AA--TTG-TTCTA-CCTGTAA.....................................................................................................................................................2220.5010100000000
.............................................................................................................................................................................................................................................................................................................................................................CTTAGACACACACTAGAGTAA..........................................................................................................2120.5010000001000
..............................GTGCTAAAGTTCGCCCACCTGT........................................................................................................................................................................................................................................................................................................................................................................................................................................2220.5010100000000
...........................................................................................................................................................................................................................................................................................................................................TCAACGTTAAGCCCATGCCT.............................................................................................................................2020.5010100000000
..................................................................................................................................................................................................................................................................................................................AA--TTG-TTCTA-CCTGTAACA--TC...............................................................................................................................................2120.5010100000000
.........GGCATACTCATTGGCCTGCTGGTGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2620.5010100000000
......................................GTTCGCCCACCTGTGAGAGCCA................................................................................................................................................................................................................................................................................................................................................................................................................................2220.5010100000000
......................................................................................................................................................................................................................................................................................................................................ACA--TCAACGTTAAGCCCATGCCTTAGAC........................................................................................................................2820.5010001000000
..................................................................................................................................................................................................................................................................................................................................TGTAACA--TCAACGTTAAGCCC...................................................................................................................................2120.5010000001000
............................................................................................................................................................................................................................................................................................................................................CAACGTTAAGCCCATGCCTTA...........................................................................................................................2120.5010100000000
.......................................................................................................................................................................................................................................................................................................................................................................CACTAGAGTAAGTTATATTTCG...............................................................................................2220.5010100000000
................................................................................................................................................................................................................................................................................................................................................GTTAAGCCCATGCCTTAGAC........................................................................................................................2020.5010100000000
...........................................................................................................................................................................................................................................................................................................................TCTA-CCTGTAACA--TCAACGT..........................................................................................................................................2020.5010100000000
..............................................................................................................................................................................................................................................TTAAT-------------------------------TCGGGCATTTGATTACG.........................................................................................................................................................................................2220.5010100000000
..................................................................................................................................................................................................................................................................................................................................................................................GTTATATTTCGCATT------------------------------------A----TGAT..............................................2020.5010100000000
..................................................................................................................................................................................................................................................................................................................AA--TTG-TTCTA-CCTGTAACA--A................................................................................................................................................2020.5010100000000
.....................................................................................................................................................................................................................................................................................................................................AACA--TCAACGTTAAGCCCATG................................................................................................................................2120.5010100000000
.........................................................................................................................................................................................................................................................................................TTTGATTACGTTTATTTG-------AA--T.....................................................................................................................................................................2120.5010100000000
...............................................................................................................................................................................................................................................................................................................................................CGTTAAGCCCATGCCTTAGA.........................................................................................................................2020.5010100000000
................................................................................................................................................................................................................................................................................................................................................................AGACACACACTAGAGTAAGTT.......................................................................................................2120.5010100000000
........................................................................................................................................................................................................................................................................................ATTTGATTACGTTTATTTG-------AA--......................................................................................................................................................................2120.5010000001000
...........................................................................................................................................................................................................................................................................................................................................TCAACGTTAAGCCCATGCA..............................................................................................................................1920.5010000010000
....................................................................................................................................................................................................................................................................................................TTATTTG-------AA--TTG-TTCTA-CCT.........................................................................................................................................................2020.5010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................ATA--AACACAGATAATATAG----------TTGG..........2320.5010100000000
......................................................................................................................................................................................................................................................................................................ATTTG-------AA--TTG-TTCTA-CCTGTA......................................................................................................................................................2120.5010100000000
..........................................................................................................................................................................................................................................................................................TTGATTACGTTTATTTG-------AA--TT....................................................................................................................................................................2120.5010100000000
.................................................................................................................................................................................................................................................................................................................................................TTAAGCCCATGCCTTAGACA.......................................................................................................................2020.5010100000000
............................................................................................................................................................................................................................................................................................................................CTA-CCTGTAACA--TCAACGTT.........................................................................................................................................2020.5010100000000
................................................................................................................................................................................................................................................................................................................................................................AGACACACACTAGAGTAAGTA.......................................................................................................2120.5010100000000
.............................................................................................................................................................................................................................................................................................................................................................CTTAGACACACACTAGAG.............................................................................................................1820.5010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATATAG----------TTGGAAGTTCTCC.2120.5010100000000
..................................................................................................................................................................................................................................................T-------------------------------TCGGGCATTTGATTACGTTTA.....................................................................................................................................................................................2220.5010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................A--AACACAGATAATATAG----------TTGG..........2120.5010100000000
........................................................................................................................................................................................................................................................................................................................................A--TCAACGTTAAGCCCATGCCT.............................................................................................................................2120.5010100000000
..................................................................................................................................................................................................................................................................................TCGGGCATTTGATTACGTTTATT...................................................................................................................................................................................2320.5010000010000
....................................................................................................................................................................................................................................................................................................................................................AGCCCATGCCTTAGACACAC....................................................................................................................2020.5010100000000
.............................................................................................................................................................................................................................................................................................................................................................CTTAGACACACACTAGAGTA...........................................................................................................2020.5010000100000
..............................................................................................................................................................................................................................................................................................TTACGTTTATTTG-------AA--TTG-TTC...............................................................................................................................................................2120.5010100000000
.................................................................................................................................................................................................................................................................................................CGTTTATTTG-------AA--TTG-TTCTA-C...........................................................................................................................................................2120.5010000000010
.........................................................................................................................................................................................................................................................................................................................................................................CTAGAGTAAGTTATATTTCGC..............................................................................................2120.5010000000100
...................................................................................................................................................................................................................................................................................CGGGCATTTGATTACGTTTATT...................................................................................................................................................................................2220.5010100000000
.....................................................AGAGCCACTGG-------AAGCGGAC.............................................................................................................................................................................................................................................................................................................................................................................................................1920.5010100000000
..............................................................................................................................................................................................................................................................................................................................................................TTAGACACACACTAGAGTAA..........................................................................................................2020.5010000001000
................................................................................................................................................................................................................................................................................................................................CCTGTAACA--TCAACGTTAAG......................................................................................................................................2020.5010100000000
droPer2
TTGGAGTTGGGCATACTCATTGGCCTGCTGGTGCTAAAGTTCGCCCACCTGTGAGAGCTACTGG-------AAGTGGACCCTTGTTTTTATTCCAAAGTTATA-------------------------------------------------------------------------------------------------------------------------ATGTACCCAGC-GATTAAT-------------------------------TCGGGCATTTGATTACGTTTATTTG-------AA--TTG-TTCTA-CCTGTAACA--TCAACGTTAAGCCCATGCCTTAGACACACACTAGAGTAAGTTACATTTCGCATT------------------------------------A----TAATAATA--AACACAGATAATATAG----------TTGGAAGTTCTCCGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................................................................................................................................................................................................................................................................................................................CTA-CCTGTAACA--TCAACGTTA........................................................................................................................................2112.002020000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATATAG----------TTGGAAGTTCTC..2112.002011000
..................................................................................................................................................................................................................................................................................................GTTTATTTG-------AA--TTG-TTCTA-CCTGT.......................................................................................................................................................2411.001010000
....................................................................................................................................................................................................................................................................................................................................................................................TACATTTCGCATT------------------------------------A----TAATAAT...........................................2111.001010000
...........................................................................................................................................................................................................................................................................................................................TCTA-CCTGTAACA--TCAACGT..........................................................................................................................................2011.001000001
...................................................................................................................................................................................................................................................................................................................A--TTG-TTCTA-CCTGTAACA--TCA..............................................................................................................................................2111.001010000
..............................................................................................................................................................................................................................................................................................................................................................................GTAAGTTACATTTCGCATT------------------------------------A----T.................................................2111.001010000
..............................................................................................................................................................................................................................................................................................TTACGTTTATTTG-------AA--TTG-TTC...............................................................................................................................................................2111.001000001
...........................................................................................................................................................................................................................................................................................................................TCTA-CCTGTAACA--TCAACGTT.........................................................................................................................................2111.001010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATAATATAG----------TTGGAAGTT.....2011.001010000
..................................................................................................................................................................................................................................GTACCCAGC-GATTAAT-------------------------------TCGGGC....................................................................................................................................................................................................2211.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGATAATATAG----------TTGGAAGTT.....2111.001000001
..................................................GTGAGAGCTACTGG-------AAGTGGACCCTT.........................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGATAATATAG----------TTGGAAGT......2111.001010000
.......................................................................................................................................................................................................................................................................................................................................CA--TCAACGTTAAGCCCATGCC..............................................................................................................................2111.001010000
..........................................................................................................................................................................................................................................................................................................................................................................TAGAGTAAGTTACATTTCGC..............................................................................................2011.001010000
droWil2
TTAGAATTGGGCATACTTGTCGGTCTGCTAGTGCTTAAATTTGTTAAATAATTA---TTACAGA-------GAGTATGTATTT---------------------------------------------------------------------------------------------------------------------------------------------ATGTATATAGA-AATTTGT-----TAAAGGCTTGATAATATTGACTAAAGGTGGACAAATGATTATGTTCGT-------------TTT---T-A-------------------TTAAAACCATGCCTTAGACATTTA---GATTAAGTTATGATATT--TA------------------------------------G----TTATAATA-AAACACAGCTAAAA---------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..............................................................................................................................................................................................................................................................................................................................................................TTAGACATTTA---GATTAAGTTA......................................................................................................2113.00302010
...............................................................................................................................................................................................................................................................................................................................................................................TAAGTTATGATATT--TA------------------------------------G----TTAT..............................................2112.00202000
.............................................................................................................................................................................................................................................................................................................................A-------------------TTAAAACCATGCCTTAGACA.......................................................................................................................2112.00202000
.................................................................................................................................................................................................................................................................................................................................................TTAAAACCATGCCTTAGACAT......................................................................................................................2112.00211000
.........................................................................................................................................................................................................................................................................................AATGATTATGTTCGT-------------TTT---T-A-------------------T..........................................................................................................................................2111.00101000
..................................................................................................................................................................................................................................GTATATAGA-AATTTGT-----TAAAGGCTT...........................................................................................................................................................................................................................2511.00100100
.....................................................................................................................................................................................................................................................................................................................................................................TTTA---GATTAAGTTATGATATT--.............................................................................................2111.00101000
.........................................................................................................................................................................................................................................................................TGACTAAAGGTGGACAAATG...............................................................................................................................................................................................2011.00101000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TAATA-AAACACAGCTAAAA---------------------------1911.00100010
......................................................................................................................................................................................................................................................................................................GT-------------TTT---T-A-------------------TTAAAACCATGCC..............................................................................................................................2011.00101000
................................................................................................................................................................................................................................................................................................................................................................................................A------------------------------------G----TTATAATA-AAACACAGCT...............................2011.00101000
....................................................................................................................................................................................................................................................................................................................................................................ATTTA---GATTAAGTTATGATAT................................................................................................2111.00101000
...................................................................................................................................................................................................................................................................................................................................................AAAACCATGCCTTAGACATT.....................................................................................................................2011.00101000
........................................................................................................................................................................................................................................................................TTGACTAAAGGTGGACAAATGA..............................................................................................................................................................................................2211.00101000
.....................................................................................................................................................................................................................................................................................GACAAATGATTATGTTCGT-------------TT.....................................................................................................................................................................2111.00100010
...............................................................................................................................................................................................................................................................TTGATAATATTGACTAAAGGTGGA.....................................................................................................................................................................................................2411.00100010
..............................................................................................................................................................................................................................................................................AAAGGTGGACAAATGATTATGT........................................................................................................................................................................................2211.00100001
..................................................................................................................................................................................................................................................................................................................................................................ACATTTA---GATTAAGTTATGAT..................................................................................................2111.00101000
..........................................................................................................................................................................................................................................................................................ATGATTATGTTCGT-------------TTT---T-A-------------------T..........................................................................................................................................2011.00101000
.............................................................................................................................................................................................................................................................................TAAAGGTGGACAAATGATTATGT........................................................................................................................................................................................2311.00100001
..................................................................................................................................................................................................................................................................................................................................................TAAAACCATGCCTTAGACATTT....................................................................................................................2211.00101000
...GAATTGGGCATACTTGTCGGTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100
................................................................................................................................................................................................................................................................................AGGTGGACAAATGATTATGTT.......................................................................................................................................................................................2111.00101000
....................................................................................................................................................................................................................................................................AATATTGACTAAAGGTGGACAAAT................................................................................................................................................................................................2411.00100010
..........................................................................................................................................................................................................................................................................................................................................................TGCCTTAGACATTTA---GATTA...........................................................................................................2011.00101000
...................................................................................................................................................................................................................................................................................................................................................AAAACCATGCCTTAGACATTT....................................................................................................................2111.00101000
droVir3
CTGGAGGTGGCCATACTCATCGGCCTGCTGGTTTTGAAGTTTGCCCATCTGTGAAGGA--CGGGCGGCATCAATCGAA------TCATTATTCCAAAGTTGAG-------------------------------------------------------------------------------------------------------------------------ATCTATGC-GT-GGTGGATATGGA----------------------------CTTTTATTAAATATGTTTATTTT---------TTTCTTCT-AA--------CA--TTCATGTTAAACCCATGCCTTAGACATATA---G----------AGT-------------TAAGTTACTATAAATCGT------TTAT-GATCGATATTAATA-AAACACAGCTAAAAGTT---ATG--------GAGATTTTTTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................ATGCCTTAGACATATA---G----------AGT-------------T....................................................................................21113.0013000000000100000000000000002150200000000000000000000000000000200
.........................................................................................................................................................................................................................................................................................................................................................................................T-------------TAAGTTACTATAAATCGT------TT...........................................................21110.0010002000000000000100010120101001000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................CTATAAATCGT------TTAT-GATCGA..................................................2113.003000000000000000000000002000000000000000100000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................TTAGACATATA---G----------AGT-------------TAAGT................................................................................2013.003011000000000000000000000000000000000000000000000000000000000010
.........................................................................................................................................................................................................................................................................................................................................................................................................AGTTACTATAAATCGT------TTAT-G.......................................................2112.002001000000000000000000000000000100000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................CATATA---G----------AGT-------------TAAGTTACTAT..........................................................................2112.002001000000000000000000010000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................AATA-AAACACAGCTAAAAGTT---AA...................2312.002000000000000000100000010000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................TTTT---------TTTCTTCT-AA--------CA--TTCATG...........................................................................................................................................2212.002000000000000000000000000000000010010000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................TGCCTTAGACATATA---G----------AGT-------------TA...................................................................................2112.002000000000000000000000000011000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................CATGCCTTAGACATATA---G----------AG...................................................................................................2012.002001000000000000000000000000000000000000000000000000000000000010
........................................................................................................................................................................................................................................................................................................TTT---------TTTCTTCT-AA--------CA--TTCATG...........................................................................................................................................2112.002002000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................CCTTAGACATATA---G----------AGT-------------TAAGT................................................................................2211.001000000000000000000000001000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................TACTATAAATCGT------TTAT-GATC....................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................ATGCCTTAGACATATA---G----------AGT-------------TC...................................................................................2211.001000000000000000000000001000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................GTTAAACCCATGCCTTAGACA.......................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
......................................GTTTGCCCATCTGTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000010000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................ATA---G----------AGT-------------TAAGTTACTATAA........................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................ATGC-GT-GGTGGATATGGA----------------------------CTT.....................................................................................................................................................................................................2111.001000000000000000010000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................CATGCCTTAGACATATA---G----------AGT-------------.....................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................AGT-------------TAAGTTACTATAAATCGT------.............................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................CA--TTCATGTTAAACCCATGCC..............................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-AAACACAGCTAAAAGTT---AA...................2111.001000000000000000000000010000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................GTTAAACCCATGCCTTAGAC........................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................ATGC-GT-GGTGGATATGGA----------------------------CTTTTATTA...............................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000010
.....................................................................................................................................................................................................................................................................................................TATTTT---------TTTCTTCT-AA--------CA--TTC..............................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
......................................GTTTGCCCATCTGTGAAGGA--CGGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000100000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................TGTTAAACCCATGCCTTAGAC........................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................TTGAG-------------------------------------------------------------------------------------------------------------------------ATCTATGC-GT-GGTGG...........................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
........................................................................................................................................................................................................................................................................................................................................................................................................AAGTTACTATAAATCGT------TTAT-C.......................................................2211.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................TA---G----------AGT-------------TAAGTTACTATAAA.......................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
.................................TTGAAGTTTGCCCATCTGTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000010
.......................................................................................................................................................................................................................................................................................................................CTTCT-AA--------CA--TTCATGTTAAA......................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................G-------------------------------------------------------------------------------------------------------------------------ATCTATGC-GT-GGTGGAT.........................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000001000
.........................................................................................................................................................................................................................................................................................................................................................ATGCCTTAGACATATA---G----------AG...................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATA-AAACACAGCTAAAAGTT---A....................2411.001000000000000001000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................CA--TTCATGTTAAACCCATGCCTT............................................................................................................................2311.001000000000000000001000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................T---------TTTCTTCT-AA--------CA--TTCATGTT.........................................................................................................................................2111.001000000000000000000000000000100000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................CTTAGACATATA---G----------AGT-------------TAAG.................................................................................2011.001000000000000000000000000000000000100000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................GT-------------TAAGTTACTATAAATCGT------T............................................................2111.001000000000000000000000000000000000000100000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................TAAATCGT------TTAT-GATCGATATT..............................................2211.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................TTACTATAAATCGT------TTAT-G.......................................................1911.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................ATGTTAAACCCATGCCTTAG..........................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................CT-AA--------CA--TTCATGTTAAACCC...................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................TAAACCCATGCCTTAGACAT......................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................AAGTTACTATAAATCGT------TTA..........................................................2011.001000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................TA---G----------AGT-------------TAAGTTACTATAA........................................................................1911.001000000000000000000000000100000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................ACATATA---G----------AGT-------------TAAGTTAC.............................................................................1911.001000000000000000000000000000000000000000100000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................AACCCATGCCTTAGACATATA---................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................AATATGTTTATTTT---------TTTCT...................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................TTTCTTCT-AA--------CA--TTCATGTTA........................................................................................................................................2111.001000000000000000000000000001000000000000000000000000000000000000
...................................................................................................................................................................................................................................................ATGGA----------------------------CTTTTATTAAATATGTTT......................................................................................................................................................................................2311.001100000000000000000000000000000000000000000000000000000000000000
................................................CTGTGAAGGA--CGGGCGGCATC.....................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................TT---------TTTCTTCT-AA--------CA--TTCATGT..........................................................................................................................................2111.001000000000000000000000000001000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTAATA-AAACACAGCT...............................2011.001000000000000000000000000000000000000000000000000000000000001000
.................................................................................................................................................................................................................................................ATATGGA----------------------------CTTTTATTAAATATG.........................................................................................................................................................................................2211.001100000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................TTAAACCCATGCCTTAGACA.......................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAATA-AAACACAGCTAAAAG..........................2211.001000000000000000000000000000010000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-AAACACAGCTAAAAGT.........................1811.001000000000000000000000000100000000000000000000000000000000000000
...........................CTGGTTTTGAAGTTTGCCCAT............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
........................................................................................................................................................................................................................................................................................................................................................................................................................T------TTAT-GATCGATATTAAT...........................................1811.001000000000000000000000000000000000010000000000000000000000000000
droMoj3
TTAGAAGTAGCCATACTCATTGGCCTGCTGATCTTAAAGTTCGCCCATCTATAGAGGC--G---AATCA----------------TTGAATTCCAAAGCTATA------------------------------------------------------------------------------------------------------------------------------TTCGGAATATGAATATGGA-----------------------------TTTTATTAAGTATTTTGTTTTG---------TCTTATCT-AA--------CA--TTCATTTTAAACCCATGCCTTAGACATATG---T----------A-TATGTATATAGAGTTAGGATAATGTAAATCGT------ATATGGAGCGATATTAATAAAAACACAGCTAA-------------------CAGTTATGAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.............................................................................................................................................................................................................................................................................................................................................................................................................AATGTAAATCGT------ATATGGAGC....................................................2112.002000002
................................................................................................................................................................................................................................................................................................................................................TTTAAACCCATGCCTTAGACA.......................................................................................................................2112.002200000
..............................................................................................................................................................................................................................................................................................................................................ATTTTAAACCCATGCCTTAGA.........................................................................................................................2112.002200000
.........................................................................................................................................................................................................................................................................................ATTAAGTATTTTGTTTTG---------TCT.....................................................................................................................................................................2112.002100001
..............................................................................................................................................................................................................................................................................................GTATTTTGTTTTG---------TCTTATCT-...............................................................................................................................................................2112.002200000
.......................................................................................................................................................................................................................................................................................................................................................................................................TAGGATAATGTAAATCGT------ATA..........................................................2111.001100000
................................................................................................................................................................................................................................................................................................................................................................................................ATAGAGTTAGGATAATGTAAA.......................................................................2111.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................TATATAGAGTTAGGATAAT............................................................................1911.001000001
........................................................................................................................................................................................................................................................................................................................................................................G---T----------A-TATGTATATAGAGTTAGGATAAT............................................................................2611.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................GTTAGGATAATGTAAATCGT------.............................................................2011.001100000
............ATACTCATTGGCCTGCTGATCTTAAAGTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCGATATTAATAAAAA......................................2011.001000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATAAAAACACAGCTAA-------------------CA........2111.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TAATAAAAACACAGCTAA-------------------CAG.......2111.001000010
.............................................................................................................................................................................................................................................................................................................................................................CTTAGACATATG---T----------A-TATGTAT............................................................................................2111.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................TATATAGAGTTAGGATAATGT..........................................................................2111.001000001
...........................................................................................................................................................................................................................................................................................................................................................................................................ATAATGTAAATCGT------ATATGGAGCG...................................................2411.001100000
........................................................................................................................................................................................................................................................................................................TTG---------TCTTATCT-AA--------CA--TTCATT...........................................................................................................................................2111.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................GAGTTAGGATAATGTAAATCG....................................................................2111.001100000
..................................................................................................................................................................................................................................................................................................................................................TAAACCCATGCCTTAGACAT......................................................................................................................2011.001100000
......................................................................................................A------------------------------------------------------------------------------------------------------------------------------TTCGGAATATGAATATG......................................................................................................................................................................................................................................1811.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................ATATAGAGTTAGGATAATGTAAATC.....................................................................2511.001000001
............................................................................................CCAAAGCTATA------------------------------------------------------------------------------------------------------------------------------TTCGGAATATGAATAT.......................................................................................................................................................................................................................................2711.001000001
................................................................................................................................................................................................................................................................................................................................................................................................ATAGAGTTAGGATAATGT..........................................................................1811.001000100
..........................................................................................................................................................................................................................................................................................TTAAGTATTTTGTTTTG---------TCTT....................................................................................................................................................................2111.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................TATATAGAGTTAGGATAATGTC.........................................................................2211.001000001
............................................................................................................................................................................................................................................................................................................................................................................................................TAATGTAAATCGT------ATATGGAG.....................................................2111.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................TAATGTAAATCGT------ATATGGAGC....................................................2211.001000001
................................................................................................................................................................................................................................................AATATGGA-----------------------------TTTTATTAAGTAT..........................................................................................................................................................................................2111.001000001
....................................................................................................................................................................................................................................................................................................................................................................ATATG---T----------A-TATGTATATAGAGT.....................................................................................2130.331100000
droGri2
CTGGAGGTGGCCATCCTCATTGGCCTCCTAGTGCTGAAGTTTGCACATCTGTAAA-----------------------------------TTCCAAAGATATC-------------------------------------------------------------------------------------------------------------------------CTGTATTT-GT-ATTGAAT--------------------------------ATGGACTTTTATTTAGTATATCTC------------TG-TTTTG-CATCTAACAATTCTAGGTTAAGAACATGCCTCAGACATGTA---G----------GATATT--G------------TGTTGTAAATGGTACATATATAT-AATCGATATTAATA-AAACACAGCTAAAAATT---ATG-------GAGATTCT-CTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...............................................................................................................................................................................................................................................................................................................................................................CAGACATGTA---G----------GATATT--G------------TGT.............................................................................2111.00101
.........................................................................................................................................................................................................................................................................................................................................ATTCTAGGTTAAGAACATGCC..............................................................................................................................2111.00110
..............................GTGCTGAAGTTTGCACATCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110
.................................................................................................................................................................................................................................................................................................AGTATATCTC------------TG-TTTTG-CATC........................................................................................................................................................2111.00110
..................................................................................................................................................................................................................................................................................................GTATATCTC------------TG-TTTTG-CATCT.......................................................................................................................................................2111.00101
.................................................................................................................................................................................................................................................................................................................................................TTAAGAACATGCCTCAGACAT......................................................................................................................2111.00110
...............................................................................................................................................................................................................................................................................................TTAGTATATCTC------------TG-TTTTG-C...........................................................................................................................................................2011.00110
.........................................................................................................................................................................................................................................................................................................................................................................................TATT--G------------TGTTGTAAATGGTACAG...............................................................2211.00110
.........................................................................................................................................................................................................................................................................................................................................................................................TATT--G------------TGTTGTAAATGGTACA................................................................2111.00101
....................................................................................................................................................................................................................................................................................................................................................AGAACATGCCTCAGACATGT....................................................................................................................2011.00110
.....................................................................................................................................................................................................................................TTT-GT-ATTGAAT--------------------------------ATGGACTTTTATT............................................................................................................................................................................................2511.00110
..............................................................................................................................................................................................................................................................................................TTTAGTATATCTC------------TG-TTTTG-C...........................................................................................................................................................2111.00110
droAna3
CTGGAAGTGGGCATCCTTATCGGGCTGCTGGTGCTTAAATTCGTGCACCTGTAGCTCTGAA---GGTTA----------------TTCTATTCCAAAGACACGCAAGATGGTGGTCGTATTTAAATCGTTATAACTTGTATCCATATTGCCTTAACTGTAAGCTACTATATAATAATAAATTTTTGTTTTTTCTCACAAAAAAAAAACAAATTTATTAATTATGATATACCCGGC-TATAAA--------------------------------TCGGGCTAATGATTATGTTTATTCA----A----TGTTTGGT-ATAA-------------------CGTCAATGCCTTAGACACCTA---A----------AATATGTATT-----------------------------------------TGATAATA-AAACACAGATAAAATTGGAACTGGAAGT-------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............ATCCTTATCGGGCTGCTGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.003300000
....................................................................................................ACGCAAGATGGTGGTCGTA.....................................................................................................................................................................................................................................................................................................................................................................1912.002000002
............................................GCACCTGTAGCTCTGAA---GG..........................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
....................................................................................................................................................................................................................................................................................................................................................CGTCAATGCCTTAGACACCTA---................................................................................................................2111.001100000
....................................................................................................................................................................................................................................................................................GGGCTAATGATTATGTTTAT....................................................................................................................................................................................2011.001100000
................................GCTTAAATTCGTGCACCTGT........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
..........GCATCCTTATCGGGCTGCTGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
............ATCCTTATCGGGCTGCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
..................ATCGGGCTGCTGGTGCTTAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
..........GCATCCTTATCGGGCTGCTGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
droBip1
TTATG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATACCCAGC-TATAAA--------------------------------ACGGGCTATTGATTATGTTTATTCA----A----TGTTTGGT-ATAA-------------------CGTCAATGCCTTAGACACCTA---A----------AATATGTATT-----------------------------------------TGATAATA-AAACACAGATAAAATTGGAACTGG-------AAGTCCTCATSizeHit CountTotal NormTotal
No Reads
droKik1
CTGGAGGTGGGCATTCTGGTTGGTCTGTTGGTGCTGAAGTTTGCCCACCTGTGAGCCG--C---AGCGA----------------TTGTATTCCAAAGTTATA----------------------------------------------------------------------------------------------------------------------------------GC-CACGCA--------------------------------TT-ATCGATGGACTATTTTTATGT----TTAAAA--T-TGTT-GT-----------------GTCAACACTATGCCTTAGCCACTAA---CATT-------AAGTTGT---------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotal
No Reads
droFic1
TTAGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATAC-CAGT-GATTAA--------------------------------ACGGGTAGTTGAATATGTTTATTCA---------TGTTTGCT-AAAA-------------------CGTTAATGCCTTAGACATCTA---T----------AATATGTATT------------------------------------A----TGGTAGTA-AAACACAGATAAAATCGGAACTGGACGTCGGAAGCTCTGCASizeHit CountTotal NormTotal
No Reads
droEle1
CTGGAGCTGGGCATTCTCGTCGGGTTGCTGGTGCTTAAGTTCGCTCACCTGTGAGCGG--C---AGCGA----------------TTTTATTCCAAAGCTATA----------------------------------------------------------------------------------------------------------------------------------GC-CACGAA--------------------------------TCGGGCGTTGGACTATATATATCT----TTT-AA--C-CGTT-ACAA-------------------CTATA-----------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
CTGGAGGTGGGCATTCTCGTCGGCTTGCTGGTGCTGAAGTTTGCTCACCTGTGAGCAG--T---TGCCA----------------TTTTATTCCAAAGATATT----------------------------------------------------------------------------------------------------------------------------------GC-CACGAA--------------------------------TCGGACAGTGGAGTATATGTATATAATTATT-AA---TCGTT-ACAA-------------------AAATATTGCCTTAGATACTGA---T----------AAGTTATGCC------------------------------------A----C-----------------------------------------ATTTTATGSizeHit CountTotal NormTotal
No Reads
droBia1
CTGGAGGTGGGCATTCTCGTAGGGCTGCTGGTGCTGAAGTTCGCCAAACTGTGAGCAG--C---CGCCA----------------CACTATTCCAAAGCTATG----------------------------------------------------------------------------------------------------------------------------------GC-CCCGAA--------------------------------TCGGGCGTGGGACTATAAATATATATGTTTT-AA--T-CGTT-ACAA-------------------AAACTTTGCCTTAGTTACGAA---T----------AAGTTATA---------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
CTGGAGGTGGGCATTCTCGTCGGGCTGCTGGTGCTCAAGTTCGCTCACCTCTGAGCGG--A---TGTCA----------------CTCTATTCCAAAGCTATA----------------------------------------------------------------------------------------------------------------------------------GC-CACGAA--------------------------------TCGGGCGTTGTTCTATGTATATGT----ATT-AA--T-TGTT-GCGA-------------------CTACTTTGCCTTAGTTATAAA---T----------AAGTTATACC------------------------ACATGTATAT-AA----AGGAAATG----AACAAATA----------------------------TASizeHit CountTotal NormTotal
No Reads
droEug1
TTGGAGGTGGGAATCCTTGCCGGGTTGCTGGTTCTAAAGTTCGTTAAATTTTAAGCGCTAG---TGCCA----------------TTTTATTCCAAAGTTATT----------------------------------------------------------------------------------------------------------------------------------GC-AGGAAA--------------------------------TCGAGCAATAGACTATGTATTTGT----ATT-AA--T-CGTT-ACGA-------------------CTACTTTGCCTTAGATACCAA---T----------AAGTTAT----------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
TTAGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATACCCAGC-GATGAA--------------------------------TCGGGTGGTTGATTATGTTTATTCA---------TGTTGGCT-AAAG-------------------CGTTAATGCCTTAGACGTCTA---T----------AATATGTATT------------------------------------A----TGGTAGTA-AAACACAGATAAAATCGGGTCTGGACATCGGAAGCTCTGCASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAATCGGGTCTGGACATC............20121.002100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................AATGCCTTAGACGTCTA---T----------AAT..................................................................................................2119.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000100000
.....................................................................................................................................................................................................................................................................................................................................................GTTAATGCCTTAGACGTCTA---T----------.....................................................................................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000100000000000000000
......................................................................................................................................................................................................................................................................................................................................................TTAATGCCTTAGACGTCTA---T----------A....................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000001000000000000000000000110000
..........................................................................................................................................................................................................................................C-GATGAA--------------------------------TCGGGTGGTTGATT............................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000001000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGACATCGGAAGCTCTGCA2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................................................................................................................................................................................................................................................................................A---------TGTTGGCT-AAAG-------------------CGTTAATG................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000001000000000000000000010000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAATCGGGTCTGGACATC............2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGGTCTGGACATCGGAAGC......2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................TAATGCCTTAGACGTCTA---T----------AA...................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................A-AAACACAGATAAAATCGGGT.....................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000100000000000
.......................................................................................................................................................................................................................................................................................................................................................TAATGCCTTAGACGTCTA---T----------AATATG...............................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................TGCCTTAGACGTCTA---T----------AATA.................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000010
.................................................................................................................................................................................................................................TATACCCAGC-GATGAA--------------------------------TCGG......................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................ATGAA--------------------------------TCGGGTGGTTGATTAT..........................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................ATGCCTTAGACGTCTA---T----------AAT..................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGGGTCTGGACATCGGAAG.......2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................ATGCCTTAGACGTCTA---T----------AATAT................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAAATCGGGTCTGGACAT.............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................AACACAGATAAAATCGGGTCT...................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................AAG-------------------CGTTAATGCCTTAGACGT......................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
.............................................................................................................................................................................................................................................ATGAA--------------------------------TCGGGTGGTTGATTA...........................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................GTTAATGCCTTAGACGTC.....................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCGGGTCTGGACATCGGA.........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................AATGCCTTAGACGTCTA---T----------AATA.................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.........................................................................................................................................................................................................................................................................................................CA---------TGTTGGCT-AAAG-------------------CGTTAAT.................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................CAGC-GATGAA--------------------------------TCGGGTGG..................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...................................................................................................................................................................................................................................................................................................TTTATTCA---------TGTTGGCT-AAAG-------------------C.......................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................CA---------TGTTGGCT-AAAG-------------------CGTTAATG................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGATAAAATCGGGTCTGG.................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTGGACATCGGAAGCTCT...2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
........................................................................................................................................................................................................................................AGC-GATGAA--------------------------------TCGGGTGGTTGAC.............................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................CCTTAGACGTCTA---T----------AATATGT..............................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.....................................................................................................................................................................................................................................................................................................................GTTGGCT-AAAG-------------------CGTTAATGCC..............................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................TT------------------------------------A----TGGTAGTA-AAACACAGA................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTCTGGACATCGGAAGCTCC...2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.................................................................................................................................................................................................................................................A--------------------------------TCGGGTGGTTGATTATGTTT......................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................TTATTCA---------TGTTGGCT-AAAG-------------------CG......................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
..........................................................................................................................................................................................................................................C-GATGAA--------------------------------TCGGGTGGTTGA..............................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
....................................................................................................................................................................................................................................................................................................................TGTTGGCT-AAAG-------------------CGTTAATGC...............................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
................................................................................................................................................................................................................................................................................................ATGTTTATTCA---------TGTTGGCT-AAA............................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................AATGCCTTAGACGTCTA---T----------.....................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................................................................................................................................TTTATTCA---------TGTTGGCT-AAAG-------------------........................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGGGTCTGGACATCGGAAGCT.....2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
........................................................................................................................................................................................................................................AGC-GATGAA--------------------------------TCGGGTGGTTGAT.............................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TTAGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATACCCAGC-GATGAA--------------------------------..........................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................AGC-GATGAA--------------------------------TCGGGTGGTTGA..............................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................ATTCA---------TGTTGGCT-AAAA-------------------T.......................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CCAGTTTTAGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATACCCAGC-GATGAA--------------------------------TCGGGTGCTTGATTATGTTTATTCA---------TGTTGGCT-AAAG-------------------CGTTAATGCCTTAGACGTCTA---T----------AATATGTATT------------------------------------A----TGGTAGTA-AAACACAGATAAAATCGGATCTGGACATCGGAAGCTCTGCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAATCGGATCTGGACATC............2115.00532000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................AGTA-AAACACAGATAAAATCGGA......................2311.00110000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGATAAAATCGGATCTG..................2011.00100100000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGGACATCGGAAGCTCT...1911.00110000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................ATATGTATT------------------------------------A----TGGTAGTA-AAA......................................2111.00100000001000000000
.......................................................................................................................................................................................................................................................................................................TTCA---------TGTTGGCT-AAAG-------------------CG......................................................................................................................................1811.00110000000000000000
.....................................................................................................................................................................................................................................................................................................................GTTGGCT-AAAG-------------------CGTTAATGCC..............................................................................................................................2111.00100000100000000000
droSec2
TTAGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATACCCAGC-GACGAA--------------------------------TCGGGTGCTTGATTATGTTTATTCA---------TGTTGGCT-AAAG-------------------CGTTAATGCCTTAGACGTCTA---T----------AATATGTATT------------------------------------A----TGGTAGTA-AAACACAGATAAAATCGGATCTGGAAATCGGAAGCTCTGCASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
....................................................................................................................................................................................................................................................................................................................................................CGTTAATGCCTTAGACGTCT....................................................................................................................2011.0011000
droYak3
T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATACCCAGC-GATGAA--------------------------------TAGGGTGCTTGATTATGTTTATTCA---------TGTTGACT-AAAG-------------------CGTTAAAGGCTTAGACGTCTA---T----------AATATGTATA------------------------------------A----TGGTAGTA-AAACACAGATAAAATCGAAGCTGGACATCGGAAGCTCTGCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................................................................................................................................................................................................................ATACCCAGC-GATGAA--------------------------------TAGG......................................................................................................................................................................................................1920.50100000010000
.........................................................................................................................................................................................................................................................................................................CA---------TGTTGACT-AAAG-------------------CGTTAAAGGCT.............................................................................................................................2520.50100000010000
...................................................................................................................................................................................................................................TACCCAGC-GATGAA--------------------------------TAGG......................................................................................................................................................................................................1820.50100000100000
....................................................................................................................................................................................................................................................................................................TTATTCA---------TGTTGACT-AAAG-------------------CGTTAAA.................................................................................................................................2620.50100000010000
.....................................................................................................................................................................................................................................................................................................................................................GTTAAAGGCTTAGACGTCTA---T----------.....................................................................................................2120.50100000100000
.....................................................................................................................................................................................................................................................................................................................GTTGACT-AAAG-------------------CGTTAAAGGCT.............................................................................................................................2220.50100000010000
.....................................................................................................................................................................................................................................................................................................................................................GTTAAAGGCTTAGACGTCTA---T----------A....................................................................................................2220.50101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAATCGAAGCTGGACC..............1920.50100000100000
........................................................................................................................................................................................................................................................................................................................GACT-AAAG-------------------CGTTAAAGGCTTAGACGT......................................................................................................................2620.50100000010000
droEre2
TTAGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAACCCAGC-GATGAA--------------------------------TCGGGCGCTTGATTATGTTTATTCA---------TGTTGACT-AAAG-------------------CGTTGATGCCTTAGACGTCTA---T----------AATATGTATA------------------------------------A----TGGTAGTA-AAACACAGATAAAATCGGAGCTGGACATCGGAAGCACTGCASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................GTTGATGCCTTAGACGTCTA---T----------.....................................................................................................2111.0010000010

Generated: 05/17/2015 at 10:36 PM