ID:

dps_473

 Coordinate:

2:11322294-11322444 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [Dpse\GA20456:5]; CDS [Dpse\GA20456-cds]; CDS [Dpse\GA20456-cds]; three_prime_UTR [Dpse\GA20456-u3]; exon [Dpse\GA20456:4]; intron [Dpse\GA20456-in]; intron [Dpse\GA20456-in]; intron [Dpse\GA20456-in]

Repeatable elements

NameClassFamilyStrand
(TTTTTG)nSimple_repeatSimple_repeat+
(TC)nSimple_repeatSimple_repeat+
mature
star
  1. XL_group1e:3011918-3011937 +
  2. XL_group1e:3069947-3069966 +
  3. XL_group1e:5773475-5773494 -
  4. XL_group1e:10770035-10770054 -
  5. XR_group3a:955802-955821 +
  6. 3:2864364-2864383 +
  7. 3:10317739-10317758 +
  8. 3:14726212-14726231 +
  9. 3:16819348-16819367 +
  10. dps_473  2:11322307-11322326 -
  11. 2:18905529-18905548 +
  12. XR_group8:2620667-2620686 +
  13. XR_group8:4259321-4259340 -
  14. XR_group8:8070974-8070993 -
  15. 4_group3:3035700-3035719 -
  16. 4_group3:3060158-3060177 -
  17. 4_group4:3532181-3532200 +
  18. 4_group4:6340121-6340140 -
  19. 4_group4:6345785-6345804 -
  20. XL_group1a:7290101-7290120 -

Sense Strand Reads

###############################################################################################################################################################################----------------------------------------------------------------------------
GCCGCCCACCGCTGCGGCCGGTGGCGTTGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAGAGAGAAACAACAGACAGGCGAGAGAGCGAGAGAGGAGAGAGAAGAGAGAAAGAGAGAGAGCGTTATTACAAGTAAAACAACAAAACAAAAAACAAAAACAAAACAAAAACAGAACAAGAATCAATTCAATACAGATACCAGAAATCGTTTAAGAACATCATTTACT
*******************************************************************************.......................((......))............................................................................*************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 GSM343916
embryo
 V112
male body		 M062
head
 SRR902012
CNS imaginal disc
 M059
embryo
..................................................................................................ACAGGCGAGAGACCGATAG...................................................................................................................................... 19 2 1 4.00 4 4 0 0 0 0 0
..........GCTGCGGCCGGTGGCGTTGCGGC.......................................................................................................................................................................................................................... 23 0 1 2.00 2 2 0 0 0 0 0
.......................GCTTTGCGGCGGCTTTTTAT................................................................................................................................................................................................................ 20 2 1 2.00 2 2 0 0 0 0 0
................................................................................................ATACAGGCGAGAGACCGA......................................................................................................................................... 18 2 2 1.50 3 3 0 0 0 0 0
..................................................................................................ACAGGCGAGAGACCGATAGCG.................................................................................................................................... 21 3 3 1.33 4 4 0 0 0 0 0
...............GGCCGGTGGCGTTGCGGCGG........................................................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0
..................................GCTGTTTATCCCGAAGGTAAACTACA............................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
.......................GCTTTGCGGCGGCTTTTTA................................................................................................................................................................................................................. 19 2 2 1.00 2 2 0 0 0 0 0
.............................................................................................................................................................................................................................ACCAGAAATCGTTTAAGAACA......... 21 0 1 1.00 1 0 0 1 0 0 0
..............................................................................................................................................................................................................................CCAGAAATCGTTTAAGAACATCAT..... 24 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................................AACAACAAAAAAAAAAAAAAAAACAAAACAAAAACA....................................................... 36 2 1 1.00 1 0 1 0 0 0 0
...............................................................................AAGTAGAGAGAAACAACAGACAGGC................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 1 0
..............................................................................................................................................................................................AAAACAGAACAAGAATCAAT......................................... 20 0 1 1.00 1 1 0 0 0 0 0
..................................................................................................ACAGGCGAGAGACCGATA....................................................................................................................................... 18 2 4 1.00 4 4 0 0 0 0 0
.........CGCTGCGGCCGGTGGCGTTGC............................................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0
................GCCGGTGGCGTTGCGGCGG........................................................................................................................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................................................................................................CAATTCAATACAGATACCAGAAAT..................... 24 0 1 1.00 1 0 0 0 0 0 1
..........................................................................AAGAAAAGTAGAGAGAAAC.............................................................................................................................................................. 19 0 1 1.00 1 0 0 1 0 0 0
.................................GGCTGTTTATCCCGAAGGTAAACTAC................................................................................................................................................................................................ 26 0 1 1.00 1 0 0 0 1 0 0
....................................................................................................AGGCGAGAGAGCGAGAGAG.................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0
..CGCCCACCGCTGCGGCCGGT..................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0
......................................................................................................................................................................................................................TACAGATACCAGAAATCGTTTAAGAACA......... 28 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................................................................AACAAAAACAGAACAAGAATCAATT........................................ 25 0 1 1.00 1 1 0 0 0 0 0
...................................................................TCAAATCTAGAGAAGTAGAGAG.................................................................................................................................................................. 22 2 1 1.00 1 0 1 0 0 0 0
.............GCGGCCGGTGGCGTTGCGGCGGCTGTT................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
........................................................................................GAAACAACAGACAGGCGAGA............................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0
............................................................................GAAAAGTAGAGAGAAACAACAGACAGGC................................................................................................................................................... 28 0 1 1.00 1 0 0 0 1 0 0
.......................GCTTTGCGGCGGCTTTTTATA............................................................................................................................................................................................................... 21 3 6 0.67 4 4 0 0 0 0 0
...........................................................................................................AGAGCGAGAGAGGAGAGA.............................................................................................................................. 18 0 2 0.50 1 0 0 1 0 0 0
...............GGCCCGTGGCGTGGCGGCGGC....................................................................................................................................................................................................................... 21 2 2 0.50 1 1 0 0 0 0 0
....................................................................................................................GAGGAGAGAGTAGAGGGAAAG.................................................................................................................. 21 2 3 0.33 1 1 0 0 0 0 0
...................................................................................................CAGGCTAGAGTTCGAGAGAGG................................................................................................................................... 21 3 3 0.33 1 0 0 0 0 1 0
....................GTGGCGTGGCGGCGGCTG..................................................................................................................................................................................................................... 18 1 7 0.29 2 2 0 0 0 0 0
.......................GCTTTGCGGCGGCTTTTTACC............................................................................................................................................................................................................... 21 3 4 0.25 1 1 0 0 0 0 0
.........CGCTACGTCCGGTGGCGTTGG............................................................................................................................................................................................................................. 21 3 4 0.25 1 0 1 0 0 0 0
..............................................................................................AAATACAGGCGAGAGACCGA......................................................................................................................................... 20 3 16 0.19 3 3 0 0 0 0 0
................GCCCGTGGCGTGGCGGCGGC....................................................................................................................................................................................................................... 20 2 6 0.17 1 1 0 0 0 0 0
........................CTTTGCGGCGGCTTTTTATA............................................................................................................................................................................................................... 20 3 20 0.15 3 2 0 1 0 0 0
.....................................................................................................................AGGAGGGAGAAGAGGGAAAG.................................................................................................................. 20 2 7 0.14 1 1 0 0 0 0 0
................................................................................................................................................................AAAAACAAAACCAAAAACAAAAACAAAACAAAAAAA....................................................... 36 3 7 0.14 1 0 1 0 0 0 0
...............................................................................................................................................................AAACAACAAAAAAAAAAACAAAAACAAAAACAAAA......................................................... 35 3 10 0.10 1 0 1 0 0 0 0
.............GCGGACGGTGGCGACGCGGC.......................................................................................................................................................................................................................... 20 3 11 0.09 1 0 0 0 0 1 0
....................GTGGCGTGGCGGCGGCTGG.................................................................................................................................................................................................................... 19 2 14 0.07 1 1 0 0 0 0 0
................................................................................................ATACAGGCGAGAGACCGAT........................................................................................................................................ 19 3 17 0.06 1 1 0 0 0 0 0
........................................................................................................................................................................AACAAAAAACAAAAACAAAA............................................................... 20 0 20 0.05 1 1 0 0 0 0 0
..............................................................................................................................................................AAAAAAAAAAAAAAAAAAACAAAAACAAAACAAAAA......................................................... 36 3 20 0.05 1 0 1 0 0 0 0
.............................................................................................................ATCGAGAAAGGAGAGAGA............................................................................................................................ 18 2 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

CGGCGGGTGGCGACGCCGGCCACCGCAACGCCGCCGACAAATAGGGCTTCCATTTGATGTTTACTATAGTTTAGTTCTTTTCATCTCTCTTTGTTGTCTGTCCGCTCTCTCGCTCTCTCCTCTCTCTTCTCTCTTTCTCTCTCTCGCAATAATGTTCATTTTGTTGTTTTGTTTTTTGTTTTTGTTTTGTTTTTGTCTTGTTCTTAGTTAAGTTATGTCTATGGTCTTTAGCAAATTCTTGTAGTAAATGA
***************************************************************.......................((......))............................................................................******************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 GSM444067
head
 V112
male body		 M062
head
 SRR902011
testis
 GSM343916
embryo
.....................................CAAATAGGGCTTCAATGTG................................................................................................................................................................................................... 19 2 2 5.00 10 0 6 0 4 0 0
.....................................CGAATAGGGCTTCAATGTG................................................................................................................................................................................................... 19 3 20 5.00 100 0 0 100 0 0 0
.....................................CGAATAGGGCTTCAATGTGA.................................................................................................................................................................................................. 20 3 1 3.00 3 3 0 0 0 0 0
......................................AAATAGGGCTTCAATGTG................................................................................................................................................................................................... 18 2 2 2.00 4 0 4 0 0 0 0
....................................GCAAATAGGGCTTCAATGTG................................................................................................................................................................................................... 20 3 3 1.33 4 2 2 0 0 0 0
.......................................................................................TCTTTGTTGTCTGTCCGCTCT............................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
..........CGACGCCGGCCACCGCAACGCC........................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0
...CGGGTGGCGACGCCGGCCA..................................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0
....................................................................................................................................................................................................CTTGTTCTTAGTTAAGTTATG.................................. 21 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................................................TTGTTTTGTTTTTGTCTTGTT................................................. 21 0 1 1.00 1 1 0 0 0 0 0
.......................CGCAACGCCGCCGACAAATAG............................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
........................................................ATGTTTTATATAGTTTACTTCTTT........................................................................................................................................................................... 24 3 2 0.50 1 1 0 0 0 0 0
.......................................AATAGGGCTTCAATGTGCT................................................................................................................................................................................................. 19 3 11 0.36 4 4 0 0 0 0 0
................CGGGCACCGCACCGCCGCCGAC..................................................................................................................................................................................................................... 22 2 3 0.33 1 1 0 0 0 0 0
.........................................................................................................................................................................................TTTGTTTTAGTCATGTTTTTAGTT.......................................... 24 3 3 0.33 1 1 0 0 0 0 0
.....................................................................................................................................................................GTTTTGTTTTTTGTTTTTGTT................................................................. 21 0 5 0.20 1 0 0 0 0 1 0
.....................................CAAATAGGGCTTCAATGTGC.................................................................................................................................................................................................. 20 3 5 0.20 1 0 1 0 0 0 0
..........................................................................................................................................................................................TTGTTTTAGTCATGTTTTTAGT........................................... 22 3 20 0.20 4 4 0 0 0 0 0
......GTGGCGACGCCGGGCAACTC................................................................................................................................................................................................................................. 20 3 6 0.17 1 0 1 0 0 0 0
......................................AAATAGGGCTTCAATGTGC.................................................................................................................................................................................................. 19 3 9 0.11 1 1 0 0 0 0 0
.....................................................................................................................TCCTCTCTCTTTTCTCTGACT................................................................................................................. 21 3 20 0.10 2 0 0 0 2 0 0
........................................ATAGGGCTTCAATGTGCT................................................................................................................................................................................................. 18 3 20 0.10 2 2 0 0 0 0 0
..........................................................................................................................TCTCTTCTCTCTTTTTCTGACTC.......................................................................................................... 23 3 11 0.09 1 0 0 0 1 0 0
.....................................CGAATAGGGCTTCAATTTG................................................................................................................................................................................................... 19 2 18 0.06 1 1 0 0 0 0 0
....................................GCGAATAGGGCTTCAATTTG................................................................................................................................................................................................... 20 3 20 0.05 1 1 0 0 0 0 0
...............CCGGTCTCCGCAACGCCACC........................................................................................................................................................................................................................ 20 3 20 0.05 1 0 0 0 0 0 1
.........................................................................................................................................................................................TTTGTTTTAGTCATGTTTTTAG............................................ 22 3 20 0.05 1 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 2:11322244-11322494 - dps_473 GCCGCCCACCGCTGCGGCCGGTGGCGTTGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAG--AGAGAAACAACAGACA--------G--GCGAG--AGAGCGAGAGAGGAGAGAGAAGAGAGAAAGAG-AGA--G-AGCGTTATTA---CA-AGTAAAACAA--------------CAAAACAAAAAACAAA------------------------------------------------------------------------------------------------------------------------AACAAAA-CAA--AAACAGAACAAGAATCAATTCAATACA-GATACCAGA-AATCGTTTAAGA--ACA-TCA---------TT--------------TACT
droPer2 scaffold_0:9193471-9193721 + dpe_447 GCCGCCCACCGCTGCGGCCGGTGGCGTTGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAG--AGAGAAACAACAGACA--------G--GCGAG--AGAGCGAGAGAGGAGAGAGAA---AGAGAGAG-AGA--G-AGCGTTATTAAAACA-AGTAAAACAA--------------CAAAACAAAAAACAAA------------------------------------------------------------------------------------------------------------------------AACAAAA-CAA--AAACAGAACAAGAATCAATTCAATACA-GATACCAGA-AATCGTTTAAGA--ACA-TCA---------TT--------------TACT
droWil2 scf2_1100000004902:11583881-11584091 + dwi_2620 GCCGCAAACCGCTGCGGCTGGTGGCGTAGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAGTAAGAGCGAGA---GACA--------G--GCGAG--C---------------------------------GA--G-AGCGTT---A---CA-AGTGAAACAA--------------CAAAACA-------------------------------------------------------------------------------------------------------------------------------------AAG-CAA--AA------------ACAATTTAAT--A--ATAACAGAAAATCGTTTAAAC--ACA-CCGCAGACATACTTTATATATATATATATACT
droVir3 scaffold_12855:3968595-3968798 - dvi_3819 GCCGCCAACCACTGCGGCCGGAGGCGTTGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAGTAGGAGGCTTA---AACA--------GATGCCAG--GG-------------------------------AGA--G-AGCGTTAC------A-A-----ACAA--------------CATAACAAAA---------AGAAA-------------------------------------------------------------AAAGAG-----AAA--------------AACATTAA-------------------AAA-CAA--AA----AACCAGAAACAGTA----ACA-GAAATCAGA-AATCGTTTAA----------------------------------------
droMoj3 scaffold_6540:8275852-8276078 - GCCGCCAACCACTGCAGCCGGTGGAGTTGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAGTGGGAGGCTGA---AACA--------GATGCCAG--GG-------------------------------AGA--G-AGCGTTAC------A-A-----ACAA--------------CATAACAAAAGAA----AAAGAAA---AAAAAGAAGAAA----AA------------------------------------------GGAA-----ATT--------------AAAAACAA-------------AATTCGAAA-CAA--AA----AACCAGAAACAGTA----ACA-GAAATCAGA-AATCGTTTAA----------------------------------------
droGri2 scaffold_14906:6589757-6589961 - GCCGCCAACCACTGCGGCCGGTGGCGTTGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAGTGCGAGGCTGA---AACA--------GATGCCAG--GG-------------------------------AGA--G-AGCGTTAC------A-A-----ACAA--------------CATAACAAACAAAAAA------------------------------------------------------------------------------------------------------------------------AGAAATA-CAAAAAAACAAAACCAGAAA----------CA--GTAACAGA-AATCGTTTAAAT--ACAATCA---------TA--------------AAC-
droAna3 scaffold_13340:9333003-9333240 - dan_2989 GCCGCCCACTGCTGCCGCTGGGGGCGTGGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAG--AGAGACAGA---GACA--------G--GCGAG--CA-------------------------------AGG--G-AGCGTTATTA---CA-AGTAAAC-AA--------------AAAAAAAA---------AACAAAGCAAAAAAAAAAAAAT----AC------------------------------------------TGAA-----AAA--------------AAAAACAAAAATCAACAA---------AAG-CAT--AA------------A-----CAATACA--ATACCAGA-AGTCGTTTAAAC--ACA-T---------ACTTT------------ATACT
droBip1 scf7180000396712:2953986-2954250 - GCCGCCCACTGCTGCCGCTGGGGGCGTGGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAG--AGAGAGAGA---GACAGAGAGACAG--GCGAG--CA----A------------------------AAAGGGAGAAGCGTTATTA---CAAAGTAAAAAAAAACAAAATATACAAAAAAAAAA--AACA--AAA---AGCTAAA--------CTAAAAACTGAAACAAAC--------------------------------------------------------------------AGCAACAA----AA---AAGACAT--AA------------A-----CAATACA-AATACCAGA-AGTCGTTTAAAC--ACA-T---------ACTTTAT----------ATACT
droKik1 scf7180000302634:816909-817162 + GCCGCCGACCGCTGCCGCCGGTGGCGTGGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAGACAGAGAGAGA---AACAGAGAGACAG--GCGAG--CA----A------------------------GAAGG--G-AGCGTTATAA---CA-AGAAAAACAA-----------------A-------------ATAGAAACA------------------------------AAACAAAACA-----------------ATTA---------AAA--------------AACAAAAGAAATCAACCAACAAAA-CCGAG-CAA--AA------------ACCATTTAATACA--ATACCAGA-AATCGTTTAAAC----C-ACA----CACACAT--------------TACT
droFic1 scf7180000453800:1310644-1310876 + GCCGCCTGCCGCTGCCGCCGCGGGCGTGGCGACGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAG--AGAGACAGA---GACA--------G--GCGAG--CG-------------------------------AGG--G-AGCGTTATTA---CA-AGTAAAA--A--------------CAAAACAA---------ATCGAAACA------------------------------AAA--------TACAAAAAATACAACAAAAA-AAA-----AAA--------------ACCATAAGAAATCAACCAACAAAATCCAAG-CAA--AA--------------------ATGCA--ATACCAGA-AATCGTTTA-----------------------------------------
droEle1 scf7180000486474:145198-145452 + GCCGCCTGCCGCTACCGCTGGGGGCGTGGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAG--AGAGACAGA---GACA--------G--GCGAG--CG-------------------------------AGG--G-AGCGTTATTA---CA-AGTAAAACAAAACAAAAA-----AAAAAACAA---------AACGAAACA--------------------------AAC---------------AA----------------GAAAAA--AAAAACAAACAAACAAAAACATAAGAAATCAACCAACAAAATCCAAG-CAA--AA--------------------ATACA--ATACCAGA-AATCGTTTAAAC--ACC-C--------------------------ATACT
droRho1 scf7180000778053:58892-59101 + GCCGCCTGCCGCTGCCGCCGGGGGCGTGGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAG--AGAGACAGA---GACA--------G--GCGAG--CA-------------------------------AGG--G-AGCGTTATTA---CA-AGTAAAAC-----------------AAAACAA---------TACGAAACA--------------------------AAC---------------AA------------------------AAA--------------AACATAAGAAATCAACCAACAAAATCCAAG-CAA--AA--------------------ATACA--ATACCAGA-AATCGTTT------------------------------------------
droBia1 scf7180000299102:1106463-1106689 - GCCGCCTGCCGCTGCCGCCGGGGGCGTGGCGGCGGCCGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAG--AGAGACAGA---GACA--------G--GGAAGCGAG-------------------------------AGG--G-AGCGTTATTA---CA-AGTAAAA-AA--------------CAAA------------------AACA--------------------------AAC---------------AA---------AAATTAAAAA---CCAAG--------------AACATAAGAAATCAACCTACAAAATCCAAG-CAA--A---------------------ATACA--ATACCAGA-AATCGTTTAAAC--ACA-----------------------------TACT
droTak1 scf7180000415653:15387-15625 - GCCGCCTGCCGCTGCCGCCGGGGGCGTGGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAG--AGAGACAGA---GACA--------G--GCGAG--CG-------------------------------AGG--G-AGCGTTA---------AGTAAAA-AA--------------CAAAACAA---------AATGAAACA--------------------------AACAAAACAAAACAATACAA---------AAA------A-----AAG--------------AACATAAGAAATCAACCAACAAAATCCAAG-CAA--AA--------------------ATACA--GTACCAGA-AATCGTTTAAAC--ACA-C--------------------------ATACT
droEug1 scf7180000409802:1179937-1180158 - GCCGCCTGCCGCTGCCGCCGGGGGCGTGGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAG--AGAGACAGA---GACA--------G--GCGAGCGAG-------------------------------AGG--G-AGCGTTATTA---CA-AGTAAAA-AA--------------CAAAACAAA--ACAAA-ATCGAAA------------------------------------------------------------------A-----AAA--------------AACATAAGAAATCAACCAACAAAATCCAAG-CAA--AA--------------------ATACAAAATACCAGA-AATCGTTTAAAC--AC----------------------------------
dm3 chr3R:8847315-8847549 + GCCGCCTGCCGCTGCCGCCGGGGGCGTGGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAG--AGAGACAGA---GACA--------G--GCGAG--CA-------------------------------AGG--G-AGCGTTATTA---CA-AGTAAAA-AA--------------AAAAACAA---------ATCGAAACA------------------------------AAACAAAAC-----AA---------AAAATATGAG-----AAG--------------AACATAAGAAATCAACCAACAAAATCCAAG-CAA--AA--------------------ATACA--ATACCAGA-AATCGTTAAAAAGAA-----------------------------------
droSim2 3r:12317674-12317904 - dsi_28862 GCCGCCTGCCGCTGCCGCCGGGGGCGTGGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAG--AGAGACAGA---GACA--------G--GCGAG--CG-------------------------------AGG--G-AGCGTTATTA---CA-AGTAAAACAA--------------AAAAACAA---------ATCGAAACA------------------------------AAA----------CAA---------AAAATATGAG-----AAG--------------AACATAAGAAATCAACCAACAAAATCCAAG-CAA--AA--------------------ATACA--ATACCAGA-AATCGTTAAAAAGAA-----------------------------------
droSec2 scaffold_0:13149032-13149262 - GCCGCCTGCCGCTGCCGCCGGGGGCGTGGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAG--AGAGACAGA---GACA--------G--GCGAG--CG-------------------------------AGG--G-AGCGTTATTA---CA-AGTAAAACAA--------------AAAAACAA---------ATCGAAACA------------------------------AAA----------CAA---------AAAATATGAG-----AAG--------------AACATAAGAAATCAACCAACAAAATCCAAG-CAA--AA--------------------ATACA--ATACCAGA-AATCGTTAAAAAGAA-----------------------------------
droYak3 3R:13142551-13142766 + GCCGCCTGCCGCTGCCGCCGGGGGCGTGGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAG--AGAGACAGA---GACA--------G--GCGAG--CA-------------------------------AGG--G-AGCGTTATTA---CA-AGTAAAAC-----------------AAAACAA---------ATCGAAACA---------------------------------------------A---------AAATTATGAA-----AAG--------------AACATAAGAAATCAACCAACAAAATCCAAG-CAA--AA---------------------------ATACCAGA-AATCGTTTAAAA--A-----------------------------------
droEre2 scaffold_4770:12801262-12801493 - der_612 GCCGCCTGCCGCTGCCGCCGGGGGCGTGGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAG--AGAGACAGA---GACA--------G--GCGAG--CA-------------------------------AGG--G-AACGTTATTA---CA-AGTAAAAT-A--------------AAAAACAA---------ATCGAAACA------------------------------AAACAAAACA-----A---------CAAATATGAA-----AAG--------------AACATAAGAAATCAACCAACAAAATCCAAG-CAA--AA--------------------ATACA--ATACCAGA-AATCGTTAAAAA--------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
GCCGCCCACCGCTGCGGCCGGTGGCGTTGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAG--AGAGAAACAACAGACA--------G--GCGAG--AGAGCGAGAGAGGAGAGAGAAGAGAGAAAGAG-AGA--G-AGCGTTATTA---CA-AGTAAAACAA--------------CAAAACAAAAAACAAA------------------------------------------------------------------------------------------------------------------------AACAAAA-CAA--AAACAGAACAAGAATCAATTCAATACA-GATACCAGA-AATCGTTTAAGA--ACA-TCA---------TT--------------TACTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........GCTGCGGCCGGTGGCGTTGCGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020200000000
...............GGCCGGTGGCGTTGCGGCGG...................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..................................GCTGTTTATCCCGAAGGTAAACTACA..........................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................ACCAGA-AATCGTTTAAGA--ACA-................................2111.0010000001000
..............................................................................................................................................................................................................................................................................................................................................................................................CCAGA-AATCGTTTAAGA--ACA-TCA---------T...................2411.0010100000000
...............................................................................AAGTAG--AGAGAAACAACAGACA--------G--GC..................................................................................................................................................................................................................................................................................................................................2511.0010000000001
...........................................................................................................................................................................................................................................................................................................................................................A--AAACAGAACAAGAATCAAT.....................................................................2011.0010100000000
.........CGCTGCGGCCGGTGGCGTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100000
................GCCGGTGGCGTTGCGGCGG...................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................CAATTCAATACA-GATACCAGA-AAT...............................................2411.0010010000000
..........................................................................AAGAAAAGTAG--AGAGAAAC.......................................................................................................................................................................................................................................................................................................................................................1911.0010000001000
.................................GGCTGTTTATCCCGAAGGTAAACTAC...........................................................................................................................................................................................................................................................................................................................................................................................2611.0010001000000
......................................................................................................A--------G--GCGAG--AGAGCGAGAGAG.................................................................................................................................................................................................................................................................................................................1911.0010100000000
..CGCCCACCGCTGCGGCCGGT................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................TACA-GATACCAGA-AATCGTTTAAGA--ACA-................................2811.0010100000000
......................................................................................................................................................................................................................................................................................................................................................AA-CAA--AAACAGAACAAGAATCAATT....................................................................2511.0010100000000
.............GCGGCCGGTGGCGTTGCGGCGGCTGTT..............................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
..........................................................................................GAAACAACAGACA--------G--GCGAG--A............................................................................................................................................................................................................................................................................................................................2011.0010100000000
............................................................................GAAAAGTAG--AGAGAAACAACAGACA--------G--GC..................................................................................................................................................................................................................................................................................................................................2811.0010001000000
.........................................................................................................................AGAGCGAGAGAGGAGAGA...........................................................................................................................................................................................................................................................................................................1820.5010000001000
............................................................................................................................................................................................................AACAAAAAACAAA------------------------------------------------------------------------------------------------------------------------AACAAAA-.............................................................................................20200.0510100000000
droPer2
GCCGCCCACCGCTGCGGCCGGTGGCGTTGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAG--AGAGAAACAACAGACA--------G--GCGAG--AGAGCGAGAGAGGAGAGAGAA---AGAGAGAG-AGA--G-AGCGTTATTAAAACA-AGTAAAACAA--------------CAAAACAAAAAACAAA------------------------------------------------------------------------------------------------------------------------AACAAAA-CAA--AAACAGAACAAGAATCAATTCAATACA-GATACCAGA-AATCGTTTAAGA--ACA-TCA---------TT--------------TACTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................GCGGCGGCTGTTTATCCCGA......................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
............................................................................GAAAAGTAG--AGAGAAACAACA...................................................................................................................................................................................................................................................................................................................................................2111.001010000
.............................................................ATGATATCAAATCAAGAAAAGTAG--AGA............................................................................................................................................................................................................................................................................................................................................................2711.001001000
......................................................................................................A--------G--GCGAG--AGAGCGAGAGA..................................................................................................................................................................................................................................................................................................................1811.001010000
.........................................................................................................................AGAGCGAGAGAGGAGAGAGAA---AGAG.................................................................................................................................................................................................................................................................................................2511.001000001
....................GTGGCGTTGCGGCGGCTGT...............................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
...............................................................................................................................AGAGAGGAGAGAGAA---AGAGA................................................................................................................................................................................................................................................................................................2011.001000001
..............................................................................................................................................................................................................................................................................................................................................................................AATTCAATACA-GATACCAGA-..................................................2011.001001000
.............................................................................................................................................................................................................................................................................................................................................................................................ACCAGA-AATCGTTTAAGA--ACA-TCA---------T...................2511.001001000
...............................................................................................................................................................................................................................................................................................................................................................................ATTCAATACA-GATACCAGA-..................................................1911.001001000
............................................................................................................................GCGAGAGAGGAGAGAGAA---AG...................................................................................................................................................................................................................................................................................................2011.001000001
.........................................................................................................................................GAGAA---AGAGAGAG-AGA--G-AGC..................................................................................................................................................................................................................................................................................20200.051001000
droWil2
GCCGCAAACCGCTGCGGCTGGTGGCGTAGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAGTAAGAGCGAGA---GACA--------G--GCGAG--C---------------------------------GA--G-AGCGTT---A---CA-AGTGAAACAA--------------CAAAACA-------------------------------------------------------------------------------------------------------------------------------------AAG-CAA--AA------------ACAATTTAAT--A--ATAACAGAAAATCGTTTAAAC--ACA-CCGCAGACATACTTTATATATATATATATACTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
............................................................................................GAGA---GACA--------G--GCGAG--C---------------------------------GA--G-AGC..................................................................................................................................................................................................................................................................................2111.00100010
..............................................................................................................................................................................................................................................................................................................................................................AA------------ACAATTTAAT--A--ATAACAGAAAATCGT............................................2811.00100010
.................................GGCTGTTTATCCCGAAGG...................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000
.........................GTAGCGGCGGCTGTTTATCCC........................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100
...............................................................................................................................................................................................................................................................................................................................................................A------------ACAATTTAAT--A--ATAACAGAAAATC..............................................2511.00100010
................................................................................................................................................................................................................................................................................................................................................................................TTTAAT--A--ATAACAGAAAATCGTTTAAAC--....................................2811.00110000
.......................................................................ATCAAGAAAAGTAGTAAGAGC..........................................................................................................................................................................................................................................................................................................................................................2111.00100010
.............GCGGCTGGTGGCGTAGCGG......................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000
...................................................................................AGTAAGAGCGAGA---GACA--------G--GCGAG--C---------------------------------...........................................................................................................................................................................................................................................................................................2411.00100010
....................................................................................................ACA--------G--GCGAG--C---------------------------------GA--G-AGCGTT---A---CA-AGT..................................................................................................................................................................................................................................................................2511.00100010
..................................................................................................................................................................................GTGAAACAA--------------CAAAACA-------------------------------------------------------------------------------------------------------------------------------------AAG-CAA--AA------------A.........................................................................2511.00100010
.....AAACCGCTGCGGCTGGTGGCGTA..........................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
.................................................................................GTAGTAAGAGCGAGA---GACA--------G--GC..................................................................................................................................................................................................................................................................................................................................2211.00100010
......................................................................................................................G--C---------------------------------GA--G-AGCGTT---A---CA-AGTGAAACAA--------------CA...........................................................................................................................................................................................................................................2611.00100010
.......................................................CTACAAATGATATCAAATCAAGAAAAGT...................................................................................................................................................................................................................................................................................................................................................................2811.00101000
....................................................................................GTAAGAGCGAGA---GACA--------G--GCGAG--C---------------------------------...........................................................................................................................................................................................................................................................................................2311.00100100
...................................................................................................GACA--------G--GCGAG--C---------------------------------GA--G-AGCGTT---A---CA-AGTG.................................................................................................................................................................................................................................................................2711.00100100
.............GCGGCTGGTGGCGTAGCGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000
.....................................................................................................................................................................................................................................................................................................................................................................................................ATCGTTTAAAC--ACA-CCGCAGA.........................2111.00100010
..................TGGTGGCGTAGCGGCGGCT.................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000
...................................................................................................GACA--------G--GCGAG--C---------------------------------GA--G-AGCGTT---A---CA-A....................................................................................................................................................................................................................................................................2411.00100100
droVir3
GCCGCCAACCACTGCGGCCGGAGGCGTTGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAGTAGGAGGCTTA---AACA--------GATGCCAG--GG-------------------------------AGA--G-AGCGTTAC------A-A-----ACAA--------------CATAACAAAA---------AGAAA-------------------------------------------------------------AAAGAG-----AAA--------------AACATTAA-------------------AAA-CAA--AA----AACCAGAAACAGTA----ACA-GAAATCAGA-AATCGTTTAA----------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......AACCACTGCGGCCGGAGGCGTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................2414.004000000000000000000000010000000000001000000000000000000000000020
.............GCGGCCGGAGGCGTTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................1812.002002000000000000000000000000000000000000000000000000000000000000
......AACCACTGCGGCCGGAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................1912.002000000000000000000000000000001000001000000000000000000000000000
...............................................................................................A---AACA--------GATGCCAG--GG-------------------------------AGA--.......................................................................................................................................................................................................................................................................................1811.001000000000010000000000000000000000000000000000000000000000000000
......................GGCGTTGCGGCGGCTGTTTATCCCGAA.....................................................................................................................................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
..CGCCAACCACTGCGGCCGGA................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000001000
.........................................ATCCCGAAGGTAAACTACAAAT.......................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................GTA----ACA-GAAATCAGA-AATCGT............................................2111.001001000000000000000000000000000000000000000000000000000000000000
...............................................................GATATCAAATCAAGAAAAGTA..................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................A---AACA--------GATGCCAG--GG-------------------------------AGA--G-AGCGTTA..............................................................................................................................................................................................................................................................................2611.001000000000000000000000010000000000000000000000000000000000000000
.........CACTGCGGCCGGAGGCGTTGCGGCGGCC.................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000100000000000000000000000000000000000000000000000000000000000
................................................................................AGTAGTAGGAGGCTTA---AACA--------GA.....................................................................................................................................................................................................................................................................................................................................2211.001000000000000000001000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................AAACAGTA----ACA-GAAATCAGA-AATCG.............................................2511.001000000000000000001000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................AAAGAG-----AAA--------------AACATTAA-------------------AAA-CAA--........................................................................................2311.001000000000000000000000000000001000000000000000000000000000000000
droMoj3
GCCGCCAACCACTGCAGCCGGTGGAGTTGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAGTGGGAGGCTGA---AACA--------GATGCCAG--GG-------------------------------AGA--G-AGCGTTAC------A-A-----ACAA--------------CATAACAAAAGAA----AAAGAAA---AAAAAGAAGAAA----AA------------------------------------------GGAA-----ATT--------------AAAAACAA-------------AATTCGAAA-CAA--AA----AACCAGAAACAGTA----ACA-GAAATCAGA-AATCGTTTAA----------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................................................................................................................................................................................................................................A---AAAAAGAAGAAA----AA------------------------------------------GGAA-----AT...........................................................................................................................................2111.001000010
..CGCCAACCACTGCAGCCGGTGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
...............................................................................................................GATGCCAG--GG-------------------------------AGA--G-AGCGTTAC------A-.....................................................................................................................................................................................................................................................................2311.001000100
...................................................................................................AACA--------GATGCCAG--GG-------------------------------AGA--G-AGC..................................................................................................................................................................................................................................................................................2111.001000010
......................................................................................GGGAGGCTGA---AACA--------GATGCCAG--GG-------------------------------AGA--.......................................................................................................................................................................................................................................................................................2711.001100000
..................................................................ATCAAATCAAGAAAAGTAGTGGGA............................................................................................................................................................................................................................................................................................................................................................2411.001000001
.........................................................................CAAGAAAAGTAGTGGGAGGC.........................................................................................................................................................................................................................................................................................................................................................2011.001000001
...............................................................................................A---AACA--------GATGCCAG--GG-------------------------------AGA--G-AGC..................................................................................................................................................................................................................................................................................2211.001000001
...............................................................................................................................................................................................................................................................................................................................................................................GTA----ACA-GAAATCAGA-AATCGTT...........................................2211.001000001
..............................................................................................................................................................................................................................................................................................................................................................AA----AACCAGAAACAGTA----ACA-............................................................1911.001100000
..........ACTGCAGCCGGTGGAGTTGCGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
droGri2
GCCGCCAACCACTGCGGCCGGTGGCGTTGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAGTGCGAGGCTGA---AACA--------GATGCCAG--GG-------------------------------AGA--G-AGCGTTAC------A-A-----ACAA--------------CATAACAAACAAAAAA------------------------------------------------------------------------------------------------------------------------AGAAATA-CAAAAAAACAAAACCAGAAA----------CA--GTAACAGA-AATCGTTTAAAT--ACAATCA---------TA--------------AAC-SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..............................................................................................................................................................................................................................................................................................................................................................................................ACAGA-AATCGTTTAAAT--ACAATCA---------TA--------------....2611.00101
droAna3
GCCGCCCACTGCTGCCGCTGGGGGCGTGGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAG--AGAGACAGA---GACA--------G--GCGAG--CA-------------------------------AGG--G-AGCGTTATTA---CA-AGTAAAC-AA--------------AAAAAAAA---------AACAAAGCAAAAAAAAAAAAAT----AC------------------------------------------TGAA-----AAA--------------AAAAACAAAAATCAACAA---------AAG-CAT--AA------------A-----CAATACA--ATACCAGA-AGTCGTTTAAAC--ACA-T---------ACTTT------------ATACTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................................................................................GACAGA---GACA--------G--GCGAG--CA-------------------------------AGG--G-AGCGG................................................................................................................................................................................................................................................................................2711.001010000
GCCGCCCACTGCTGCCGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
..............................................................................................................................................................................................................................................................................................................................................................AA------------A-----CAATACA--ATACCAGA-..................................................1811.001010000
.......................................................................ATCAAGAAAAGTAG--AGAGACAGA---...................................................................................................................................................................................................................................................................................................................................................2311.001000010
....................................................................................................ACA--------G--GCGAG--CA-------------------------------AGG--G-AGC..................................................................................................................................................................................................................................................................................1811.001100000
.......................GCGTGGCGGCGGCTGTTTATCCCGA......................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
.................................GGCTGTTTATCCCGAAGGT..................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
...........CTGCCGCTGGGGGCGTGGCGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
.......ACTGCTGCCGCTGGGGGCGTGGC........................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
............................................................................................CAGA---GACA--------G--GCGAG--CA-------------------------------AGG--.......................................................................................................................................................................................................................................................................................1911.001000010
...............................................................GATATCAAATCAAGAAAAGTAG--AG.............................................................................................................................................................................................................................................................................................................................................................2411.001000010
...............CGCTGGGGGCGTGGCGGCGGCT.................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
....................................................................................G--AGAGACAGA---GACA--------G--GCGAG--CA-------------------------------AGG--G-A....................................................................................................................................................................................................................................................................................2711.001100000
...........................................................................................ACAGA---GACA--------G--GCGAG--CA-------------------------------AGG--G-AGCGT................................................................................................................................................................................................................................................................................2611.001000100
.............................................................................AAAAGTAG--AGAGACAGA---GACA--------G--GC..................................................................................................................................................................................................................................................................................................................................2411.001010000
...........................GGCGGCGGCTGTTTATCCCGAAG....................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
.........................................................................................................................................................................................................................................................................................................AAA--------------AAAAACAAAAATCAACAC---------.................................................................................................2130.331010000
...............................................................................................................................................................................................................AA---------AACAAAGCAAAAAAAAAA..........................................................................................................................................................................................................2070.141010000
droBip1
GCCGCCCACTGCTGCCGCTGGGGGCGTGGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAG--AGAGAGAGA---GACAGAGAGACAG--GCGAG--CA----A------------------------AAAGGGAGAAGCGTTATTA---CAAAGTAAAAAAAAACAAAATATACAAAAAAAAAA--AACA--AAA---AGCTAAA--------CTAAAAACTGAAACAAAC--------------------------------------------------------------------AGCAACAA----AA---AAGACAT--AA------------A-----CAATACA-AATACCAGA-AGTCGTTTAAAC--ACA-T---------ACTTTAT----------ATACTSizeHit CountTotal NormTotal
No Reads
droKik1
GCCGCCGACCGCTGCCGCCGGTGGCGTGGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAGACAGAGAGAGA---AACAGAGAGACAG--GCGAG--CA----A------------------------GAAGG--G-AGCGTTATAA---CA-AGAAAAACAA-----------------A-------------ATAGAAACA------------------------------AAACAAAACA-----------------ATTA---------AAA--------------AACAAAAGAAATCAACCAACAAAA-CCGAG-CAA--AA------------ACCATTTAATACA--ATACCAGA-AATCGTTTAAAC----C-ACA----CACACAT--------------TACTSizeHit CountTotal NormTotal
No Reads
droFic1
GCCGCCTGCCGCTGCCGCCGCGGGCGTGGCGACGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAG--AGAGACAGA---GACA--------G--GCGAG--CG-------------------------------AGG--G-AGCGTTATTA---CA-AGTAAAA--A--------------CAAAACAA---------ATCGAAACA------------------------------AAA--------TACAAAAAATACAACAAAAA-AAA-----AAA--------------ACCATAAGAAATCAACCAACAAAATCCAAG-CAA--AA--------------------ATGCA--ATACCAGA-AATCGTTTA-----------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
GCCGCCTGCCGCTACCGCTGGGGGCGTGGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAG--AGAGACAGA---GACA--------G--GCGAG--CG-------------------------------AGG--G-AGCGTTATTA---CA-AGTAAAACAAAACAAAAA-----AAAAAACAA---------AACGAAACA--------------------------AAC---------------AA----------------GAAAAA--AAAAACAAACAAACAAAAACATAAGAAATCAACCAACAAAATCCAAG-CAA--AA--------------------ATACA--ATACCAGA-AATCGTTTAAAC--ACC-C--------------------------ATACTSizeHit CountTotal NormTotal
No Reads
droRho1
GCCGCCTGCCGCTGCCGCCGGGGGCGTGGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAG--AGAGACAGA---GACA--------G--GCGAG--CA-------------------------------AGG--G-AGCGTTATTA---CA-AGTAAAAC-----------------AAAACAA---------TACGAAACA--------------------------AAC---------------AA------------------------AAA--------------AACATAAGAAATCAACCAACAAAATCCAAG-CAA--AA--------------------ATACA--ATACCAGA-AATCGTTT------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
GCCGCCTGCCGCTGCCGCCGGGGGCGTGGCGGCGGCCGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAG--AGAGACAGA---GACA--------G--GGAAGCGAG-------------------------------AGG--G-AGCGTTATTA---CA-AGTAAAA-AA--------------CAAA------------------AACA--------------------------AAC---------------AA---------AAATTAAAAA---CCAAG--------------AACATAAGAAATCAACCTACAAAATCCAAG-CAA--A---------------------ATACA--ATACCAGA-AATCGTTTAAAC--ACA-----------------------------TACTSizeHit CountTotal NormTotal
No Reads
droTak1
GCCGCCTGCCGCTGCCGCCGGGGGCGTGGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAG--AGAGACAGA---GACA--------G--GCGAG--CG-------------------------------AGG--G-AGCGTTA---------AGTAAAA-AA--------------CAAAACAA---------AATGAAACA--------------------------AACAAAACAAAACAATACAA---------AAA------A-----AAG--------------AACATAAGAAATCAACCAACAAAATCCAAG-CAA--AA--------------------ATACA--GTACCAGA-AATCGTTTAAAC--ACA-C--------------------------ATACTSizeHit CountTotal NormTotal
No Reads
droEug1
GCCGCCTGCCGCTGCCGCCGGGGGCGTGGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAG--AGAGACAGA---GACA--------G--GCGAGCGAG-------------------------------AGG--G-AGCGTTATTA---CA-AGTAAAA-AA--------------CAAAACAAA--ACAAA-ATCGAAA------------------------------------------------------------------A-----AAA--------------AACATAAGAAATCAACCAACAAAATCCAAG-CAA--AA--------------------ATACAAAATACCAGA-AATCGTTTAAAC--AC----------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
GCCGCCTGCCGCTGCCGCCGGGGGCGTGGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAG--AGAGACAGA---GACA--------G--GCGAG--CA-------------------------------AGG--G-AGCGTTATTA---CA-AGTAAAA-AA--------------AAAAACAA---------ATCGAAACA------------------------------AAACAAAAC-----AA---------AAAATATGAG-----AAG--------------AACATAAGAAATCAACCAACAAAATCCAAG-CAA--AA--------------------ATACA--ATACCAGA-AATCGTTAAAAAGAA-----------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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................................CGGCTGTTTATCCCGAAG....................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................GAG--CA-------------------------------AGG--G-AGCGTTATT............................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................AGG--G-AGCGTTATTA---CA-AG...................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................AA--------------------ATACA--ATACCAGA-AATCGT............................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................AAAACAA---------ATCGAAACA------------------------------AAAC.................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................AG--------------AACATAAGAAATCAACC...........................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................AACAAAAC-----AA---------AAAATATGAG-----A............................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................CAGA---GACA--------G--GCGAG--CA-------------------------------AGG--G-AGCG.................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................AAGAAAAGTAG--AGAGACAG.......................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
......................................................................AATCAAGAAAAGTAG--AGAGACAGA---GAC................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....CCTGCCGCTGCCGCCGGGGGCGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........GCTGCCGCCGGGGGCGTGGC........................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.................CCGGGGGCGTGGCGGCG....................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....CTGCCGCTGCCGCCGGGGGCGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................AG--------------AACATAAGAAATCAACCAACAAA.....................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................AA---------AAAATATGAG-----AAG--------------AA..........................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................TACA--ATACCAGA-AATCGTTAAAAAGAA-----------------------------------2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................AAAGTAG--AGAGACAGA---GA.................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................CAA--AA--------------------ATACA--ATACCAGA-AATCGTTAAA........................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................ATACCAGA-AATCGTTAAAAAG.....................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................A--AA--------------------ATACA--ATACCAGA-AATCGTTA..........................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................CAACCAACAAAATCCAAG-CA...........................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................CA--------G--GCGAG--CA-------------------------------AGG--G-AGCGTTATTA---CA-A....................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................GGCGGCTGTTTATCCCGAAGG...................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................TGATATCAAATCAAGAAAAGTAG--AGAA...........................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................TAG--AGAGACAGA---GACA--------G--GCGAG--CA-------------------------------AGG--G-.....................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................AACATAAGAAATCAACCAACAAAATC..................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................CGAAGGTAAACTACAAATGA.....................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................GG--G-AGCGTTATTA---CA-AGTAA................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................CGTGGCGGCGGCTGTTTATCCCGAAG....................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.............................................................................................................................................................................................................................................................................................ATATGAG-----AAG--------------AACATAAGA...................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................AAAAGTAG--AGAGACAGA---G..................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................AGTAG--AGAGACAGA---GACA--------G--GC..................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................AG--------------AACATAAGAAATCAACCAA.........................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................TCCAAG-CAA--AA--------------------ATACA--AT.........................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................AACAAAAC-----AA---------AAAATATG....................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................CGTTATTA---CA-AGTAAAA-AG--------------TC...........................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GCCGCCTGCCGCTGCCGCCGGGGGCGTGGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAG--AGAGACAGA---GACA--------G--GCGAG--CG-------------------------------AGG--G-AGCGTTATTA---CA-AGTAAAACAA--------------AAAAACAA---------ATCGAAACA------------------------------AAA----------CAA---------AAAATATGAG-----AAG--------------AACATAAGAAATCAACCAACAAAATCCAAG-CAA--AA--------------------ATACA--ATACCAGA-AATCGTTAAAAAGAA-----------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.............................................................................................................................................................................................................................................................................................ATATGAG-----AAG--------------AACATAAGAAATCAA.............................................................................................................2512.00200000000000002000
..............................................................................................................................................................................................................................................................................................TATGAG-----AAG--------------AACATA......................................................................................................................1511.00100000010000000000
......TGCCGCTGCCGCCGGGGGCGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000000001000000
...........................................................................................................................................................................................................................TCGAAACA------------------------------AAA----------CAA---------AAAATATGAG-----AAG--------------A...........................................................................................................................2811.00100000001000000000
...........................................................................................ACAGA---GACA--------G--GCGAG--CG-------------------------------AGG--G-AGCGTT...............................................................................................................................................................................................................................................................................2711.00101000000000000000
........................................................................TCAAGAAAAGTAG--AGAGACAGA---GACA--------G--G...................................................................................................................................................................................................................................................................................................................................2811.00100000000000001000
...............................................................................................................................................................................................................................................................................................................................AAGAAATCAACCAACAAAATCCA................................................................................................2311.00100001000000000000
..................................................................................TAG--AGAGACAGA---GACA--------G--GCGA................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
...GCCTGCCGCTGCCGCCGGGGGCGT...........................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000001000000
..........................................................................................................................G-------------------------------AGG--G-AGCGTTATTA---CA-AGT..................................................................................................................................................................................................................................................................2011.00100010000000000000
.........................................................................................................................................................................TA---CA-AGTAAAACAA--------------AAAAACAA---------ATCGAAA.....................................................................................................................................................................................................................2911.00100010000000000000
..........................................................................................................................................................................................................................................................................................................................................................AA--AA--------------------ATACA--ATACCAGA-AATCGTT...........................................2411.00100010000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................TACA--ATACCAGA-AATCGTTAAAAAGAA-----------------------------------2711.00100000000001000000
..........................................................................................................................................................................................................................................................................................AAAATATGAG-----AAG--------------AA..........................................................................................................................1530.33100000010000000000
droSec2
GCCGCCTGCCGCTGCCGCCGGGGGCGTGGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAG--AGAGACAGA---GACA--------G--GCGAG--CG-------------------------------AGG--G-AGCGTTATTA---CA-AGTAAAACAA--------------AAAAACAA---------ATCGAAACA------------------------------AAA----------CAA---------AAAATATGAG-----AAG--------------AACATAAGAAATCAACCAACAAAATCCAAG-CAA--AA--------------------ATACA--ATACCAGA-AATCGTTAAAAAGAA-----------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...................................................................................................GACA--------G--GCGAG--CG-------------------------------AGG--G-AGC..................................................................................................................................................................................................................................................................................1912.0020110
.................................GGCTGTTTATCCCGAAGGA..................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
..........................................................................................GACAGA---GACA--------G--GCGAG--CG-------------------------------AGG--.......................................................................................................................................................................................................................................................................................2111.0010010
....................................................................................................................GAG--CG-------------------------------AGG--G-AGCGTTATTA---C.......................................................................................................................................................................................................................................................................2011.0011000
...................................................................................AG--AGAGACAGA---GACA--------G--GCGAG--CG-------------------------------............................................................................................................................................................................................................................................................................................2311.0010010
.....CTGCCGCTGCCGCCGGGGGCGT...........................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100
droYak3
GCCGCCTGCCGCTGCCGCCGGGGGCGTGGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAG--AGAGACAGA---GACA--------G--GCGAG--CA-------------------------------AGG--G-AGCGTTATTA---CA-AGTAAAAC-----------------AAAACAA---------ATCGAAACA---------------------------------------------A---------AAATTATGAA-----AAG--------------AACATAAGAAATCAACCAACAAAATCCAAG-CAA--AA---------------------------ATACCAGA-AATCGTTTAAAA--A-----------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....CCTGCCGCTGCCGCCGGG................................................................................................................................................................................................................................................................................................................................................................................................................................1815.00500000000005
.............................................................................................AGA---GACA--------G--GCGAG--CA-------------------------------AGG--G-AGCGT................................................................................................................................................................................................................................................................................2412.00200100010000
.............................................................................................................................................................................................................................................................................................................................ATAAGAAATCAACCAACAAA.....................................................................................................2011.00101000000000
.......................GCGTGGCGGCGGCTGTTTAT...........................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
........CCGCTGCCGCCGGGGGCGTGGC........................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000
.........................................................................................................................................................................................................................................................................................................................................................CAA--AA---------------------------ATACCAGA-AATCGTT...........................................2011.00100000010000
.......................................................................ATCAAGAAAAGTAG--AGAGACAGA---G..................................................................................................................................................................................................................................................................................................................................................2411.00100100000000
.................................................................................................................................................................................................................................................................................................GAA-----AAG--------------AACATAAGAAATCAACC...........................................................................................................2311.00100100000000
.........................................................................CAAGAAAAGTAG--AGAGACAGA---GACA--------G--G...................................................................................................................................................................................................................................................................................................................................2711.00100100000000
........................................................................TCAAGAAAAGTAG--AGAGACAGA---...................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
..............................................................................AAAGTAG--AGAGACAGA---GACA--------.......................................................................................................................................................................................................................................................................................................................................2011.00100000010000
......................................................................................................A--------G--GCGAG--CA-------------------------------AGG--G-AGCGTTATTA---CA-A....................................................................................................................................................................................................................................................................2611.00100000010000
droEre2
GCCGCCTGCCGCTGCCGCCGGGGGCGTGGCGGCGGCTGTTTATCCCGAAGGTAAACTACAAATGATATCAAATCAAGAAAAGTAG--AGAGACAGA---GACA--------G--GCGAG--CA-------------------------------AGG--G-AACGTTATTA---CA-AGTAAAAT-A--------------AAAAACAA---------ATCGAAACA------------------------------AAACAAAACA-----A---------CAAATATGAA-----AAG--------------AACATAAGAAATCAACCAACAAAATCCAAG-CAA--AA--------------------ATACA--ATACCAGA-AATCGTTAAAAA--------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................................................................ATCAAATCAAGAAAAGTAG--AGAGACA........................................................................................................................................................................................................................................................................................................................................................2611.0010000100
....................................................................................G--AGAGACAGA---GACA--------G--GCGAG--CA-------------------------------AGG--.......................................................................................................................................................................................................................................................................................2511.0011000000
.........................GTGGCGGCGGCTGTTTATCCCGAAGGT..................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
...............................................................GATATCAAATCAAGAAAAGTA..................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
.......GCCGCTGCCGCCGGGGGCGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
.........................................ATCCCGAAGGTAAACTACAAATG......................................................................................................................................................................................................................................................................................................................................................................................2311.0010001000
..................................................................ATCAAATCAAGAAAAGTAG--AGAGACAGA---...................................................................................................................................................................................................................................................................................................................................................2811.0010000100
.........................................................................CAAGAAAAGTAG--AGAGACAGA---GA.................................................................................................................................................................................................................................................................................................................................................2311.0010000010
..............................................................TGATATCAAATCAAGAAAAGTAG--AGA............................................................................................................................................................................................................................................................................................................................................................2611.0011000000
......................GGCGTGGCGGCGGCTGTTTATCCCGA......................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000000
...................................................................................................GACA--------G--GCGAG--CA-------------------------------AGG--G-AACGTTATT............................................................................................................................................................................................................................................................................2511.0010000100
.......................................................................ATCAAGAAAAGTAG--AGAGAC.........................................................................................................................................................................................................................................................................................................................................................2011.0010000100
..................................................................................TAG--AGAGACAGA---GACA--------G--GC..................................................................................................................................................................................................................................................................................................................................1911.0010100000
.........................................................................................................................CA-------------------------------AGG--G-AACGTTATTA---CA-AGT..................................................................................................................................................................................................................................................................2111.0010001000
..........................................................................AAGAAAAGTAG--AGAGACAGA---GA.................................................................................................................................................................................................................................................................................................................................................2211.0010000100
..................................................................................................................................................................................................................................................................................................................................................TCCAAG-CAA--AA--------------------ATACA--ATACCA.....................................................2211.0011000000
........................................................................................................................................................................TTA---CA-AGTAAAAT-A--------------AAAAACAA---------ATCGAA......................................................................................................................................................................................................................2811.0011000000
....................................................................................................................................................................................................................................................................................................................................................................................ATACA--ATACCAGA-AATCGTTAAA........................................2311.0010000100
.............................................................ATGATATCAAATCAAGAAAAGTAG--...............................................................................................................................................................................................................................................................................................................................................................2411.0011000000
..............................................................................................GA---GACA--------G--GCGAG--CA-------------------------------AGG--G-AAC..................................................................................................................................................................................................................................................................................2111.0010000100
...............................................................GATATCAAATCAAGAAAAGT...................................................................................................................................................................................................................................................................................................................................................................2011.0010000100

Generated: 05/17/2015 at 10:31 PM