ID:

dps_444

 Coordinate:

2:9729040-9729190 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-3.6

Flybase annnotation

exon [Dpse\GA15070:1]; five_prime_UTR [Dpse\GA15070-u5]; intron [Dpse\GA15070-in]

Repeatable elements

NameClassFamilyStrand
(TG)nSimple_repeatSimple_repeat+
mature
star
  1. 3:6610462-6610481 +
  2. 2:1817270-1817289 -
  3. dps_444  2:9729084-9729103 +

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GTGTTGTCTCTCCCCCATCCCCCCGGCAATCTGCTACTCATGGAGAATAAGTAAAGAATGCACTGTGGCCGTAATCGACTCACCAAAAAAAGTTGATGTTGTGTGTGTGTGTGTGTGTGTGTATCTCTGCAAAGGGAAAAGTTGTGCGTGTGTGTATTGAAGAAAAGTAACCATCGAATCGCTCCCCTCCTTCGCTTTGCGCACTTACAACTACACTTTTGCTGGCAGTGGCAGCGGCGGCGGCTCCAAGC
**********************************************************************************************.............................(((((....))))).............***************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 V112
male body		 GSM444067
head
.....................................................................................................................................................................................CTCCCCACCTTCGCATTGCG.................................................. 20 2 1 2.00 2 2 0 0
.....................................................................................................................................................................................CTCCCCACCTTCGCATTGCGA................................................. 21 3 4 1.75 7 7 0 0
...................................................................................................................................................................................CTCTCCCCACCTTCGCATTGC................................................... 21 3 3 1.33 4 3 1 0
................................................AAGTAAAGAATGCACTGTGG....................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0
.................................................................................................................................CAAAGGGAAAAGTTGTGCGTG..................................................................................................... 21 0 1 1.00 1 0 1 0
................ATCCCCCCGGCAATCTGCTACTCATGGA............................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0
..................................................................................................................................AAAGGGAAAAGTGGTGCTT...................................................................................................... 19 2 3 1.00 3 2 1 0
.....................................TCATGGAGAATAAGTAAAGAATGCAC............................................................................................................................................................................................ 26 0 1 1.00 1 1 0 0
....................................................................................................................................................................................TCTCCCCACCTTCGCATTGCG.................................................. 21 3 2 1.00 2 2 0 0
............................................................................................................................................CTTGTGCGTGTGTGTATTGAAG......................................................................................... 22 1 1 1.00 1 0 0 1
............................................................................................................................................GTTGTGCGTGTGTATATTGCA.......................................................................................... 21 2 1 1.00 1 0 1 0
................................................................................................................................................................................................................................GCAGTGGCAGCGGCGGCGGCT...... 21 0 2 0.50 1 1 0 0
.................................................................................................................................................................................................GCTTTGCGAACCTACAGC........................................ 18 3 20 0.35 7 7 0 0
....................................................................................................................................................................................CCTCCCCACCTTCGCATTGCG.................................................. 21 3 3 0.33 1 1 0 0
..................................................................................................................................AAAGGGAAAAGTGGTGCT....................................................................................................... 18 2 15 0.33 5 5 0 0
..............................................................................................GATGTTGTGTGTGTGTGTGT......................................................................................................................................... 20 0 3 0.33 1 1 0 0
..............................................................................................GATGTTGTGTGTGTGTGTTT......................................................................................................................................... 20 1 6 0.33 2 0 2 0
...................................................................................................................................AAGGGAAAAGTGGTGCTT...................................................................................................... 18 2 8 0.25 2 2 0 0
...................................................................................................................................................................................CTCTCCCCACCTTCGCATTG.................................................... 20 3 17 0.24 4 4 0 0
.....................................................................................................................................................................................CTCCCCACCTTCGCAATGCG.................................................. 20 3 6 0.17 1 1 0 0
.....................................................................................................................................................................................CTCCCCACCTTCGCAGTGCG.................................................. 20 3 6 0.17 1 1 0 0
.................................................................................................................................TAAAGGGAAAAGTGGTGCTT...................................................................................................... 20 3 14 0.14 2 1 1 0
.................................................................................................................................................................................AACTCTCCCCACCTTCGCTTT..................................................... 21 3 7 0.14 1 1 0 0
.....................................TCATGGAGGCAAAGTAAAGA.................................................................................................................................................................................................. 20 3 16 0.06 1 0 1 0
..................................................................................................................................................................................................................CTACGCTTATGCTGGCAGG...................... 19 3 17 0.06 1 1 0 0
.............................................................................................................................................TTGTGCGTGTGTGTATTT............................................................................................ 18 1 19 0.05 1 1 0 0
..............................................................................................GATGTTGTGCGTGTGTGTTT......................................................................................................................................... 20 2 19 0.05 1 0 1 0
................................................................................................................................................TGCGTGTGTGTATAGAAAAGA...................................................................................... 21 3 20 0.05 1 1 0 0
....................................................................................................................................................TGTGTGTCTTGAAGAAAAAA................................................................................... 20 3 20 0.05 1 1 0 0

Anti-sense strand reads

CACAACAGAGAGGGGGTAGGGGGGCCGTTAGACGATGAGTACCTCTTATTCATTTCTTACGTGACACCGGCATTAGCTGAGTGGTTTTTTTCAACTACAACACACACACACACACACACACATAGAGACGTTTCCCTTTTCAACACGCACACACATAACTTCTTTTCATTGGTAGCTTAGCGAGGGGAGGAAGCGAAACGCGTGAATGTTGATGTGAAAACGACCGTCACCGTCGCCGCCGCCGAGGTTCG
*****************************************************************************************************.............................(((((....))))).............********************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 V112
male body		 GSM343916
embryo
 M059
embryo
.....................................................................................................................................................................................GAGGGGTGGAAGCGTAACGC.................................................. 20 2 1 9.00 9 8 1 0 0
......................................................................................................................................................................................AGGGGTGGAAGCGTAACGC.................................................. 19 2 2 9.00 18 13 5 0 0
......................................................................................................................................................................................AGGGGTGGAAGCGTAACGCTT................................................ 21 3 4 4.50 18 14 4 0 0
....................................................................................................................................................................................AGAGGGGTGGAAGCGTAACGC.................................................. 21 3 2 3.00 6 5 1 0 0
......................................................................................................................................................................................AGGGGTGGAAGCGTAACGCT................................................. 20 3 9 1.44 13 10 3 0 0
..........................................................................AGCTGAGTGGTTCGTTTCA.............................................................................................................................................................. 19 2 1 1.00 1 0 0 1 0
.....................................................................................................................................................................................GAGGGGTGGAAGCGTTACGC.................................................. 20 3 6 1.00 6 5 1 0 0
.....................................................TTCTTACGTGACACCGGCATT................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0
..............GGTAGGGGGGCCGTTAGA........................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 1 0
.......................................................................................................................................................................................GGGGTGGAAGCGTAACGCTT................................................ 20 3 9 0.89 8 8 0 0 0
.......................................................................................................................................................................................GGGGTGGAAGCGTAACGC.................................................. 18 2 5 0.80 4 4 0 0 0
.....................................................................................................................................................................................TAGGGGTGGAAGCGTAACGC.................................................. 20 3 5 0.60 3 3 0 0 0
...............TTAGGGGGGCCGTTAGACGA........................................................................................................................................................................................................................ 20 1 2 0.50 1 0 1 0 0
....................................................................................................................................................................................TGAGGGGTGGAAGCGTAACGC.................................................. 21 3 4 0.50 2 1 1 0 0
...................................................................................................................................................................................GAGAGGGGTGGAAGCGTAACG................................................... 21 3 3 0.33 1 1 0 0 0
.....................................................................................................................................................................................GAGGGGTGGAAGCGTAACG................................................... 19 2 3 0.33 1 1 0 0 0
......................................................................................................................................................................................AGGGGTGGAAGCGTTACGC.................................................. 19 3 19 0.26 5 5 0 0 0
........................................................................................................................................................................................GGGTGGAAGCGTAACGCTT................................................ 19 3 20 0.25 5 5 0 0 0
.....................................................................................................................................................................................GAGGGGTGGAAGCGTAACGCT................................................. 21 3 4 0.25 1 1 0 0 0
......................................................................................................................................................................................AGGGGTGGAAGCGTAACG................................................... 18 2 9 0.22 2 2 0 0 0
...................................................................................................................................................................................GAGAGGGGTGGAAGCGTAAC.................................................... 20 3 17 0.18 3 3 0 0 0
.....................................................................................................................................................................................GAGGGGTGGAAGCGTCACGC.................................................. 20 3 6 0.17 1 0 1 0 0
......................................................................................................................................................................................AGGGGTGGAATCGTAACGC.................................................. 19 3 10 0.10 1 0 1 0 0
....................................................................................................................................................................................AGAGGGGTGGAAGCGTAACG................................................... 20 3 10 0.10 1 1 0 0 0
.......................................................................................................................................................................................GGGGTGGAAGCGTAACGCT................................................. 19 3 20 0.10 2 2 0 0 0
...............................................................................................................................................................................CTTGGTGAGGGGAGGAAG.......................................................... 18 2 10 0.10 1 0 1 0 0
.....................................................................................................................................................................................GAGGGGTGGAAGCGTAAC.................................................... 18 2 12 0.08 1 1 0 0 0
..................................................................................................................................................................................GGCGAGGGGAGGAAGGGAA...................................................... 19 2 14 0.07 1 1 0 0 0
......................................................................................................................................................................................AGGGGTGGAAGCGAAACCCA................................................. 20 3 14 0.07 1 1 0 0 0
......................................................................................................................................................................................AGGGGTGGAAGCCTAACGC.................................................. 19 3 16 0.06 1 1 0 0 0
...............................................................................................TACAACACACACACACAC.......................................................................................................................................... 18 0 19 0.05 1 0 0 0 1
.........................................................................TAGCCGAGTGGTTTTTTGA............................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0
...........................................TCTTATCCATTTCTTGCGA............................................................................................................................................................................................. 19 3 20 0.05 1 0 0 1 0
.....................................................................................................................................................................................GAGGGGTGGAAGCGATACT................................................... 19 3 20 0.05 1 0 1 0 0
.................................................................................................CAACACACACACACACACAC...................................................................................................................................... 20 0 20 0.05 1 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 2:9728990-9729240 + dps_444 GTGTTG----------------------------TC---TCTCCCCCATCCCCCCGGCAATCTGCT----ACTCATG----GAGAA--TAAGTAAA-------------GAATGCACTGTGGCCGTAATC----GACTCACCAAAAAAAGTTGATGTTG-T-----------------------------GTGTGTG----TGTGTG-TGTGTGT------ATCTCT-------GCAA-AGGGAAAA-G-T-----------------------------------------------TGT--GC--GTGTGTGTATTGAAGAAAAGTAACCATCGAAT--------CGC-TCC-C--C-TCCTTCGCTTTGCGCACTTACAACTACA-----------------------------------------CTTTTGCTGGCA------GTG-----------------------------GCAGCGGCGGCGGCTCCAAGC
droPer2 scaffold_0:10751537-10751781 - GTGTTG----------------------------TC---TCTCCCCCATCC-CCCGGCAATCTGCT----ACTCATG----GAGAA--TAAGTAAA-------------GAATGCACTGTGGCCGTAATC----GACTCACCAAAAAAAGTTGATGTT------------------------------------GTG----TGTGTG-TGTGTGT------ATCTCT-------GCAA-AGGGAAAA-G-T-----------------------------------------------TGT--GC--GTGTGTGTATTGAAGAAAAGTAACCATCGAAT--------CGCCCCC-C--C-TCCCTCGCTTTGCGCACTTACAACTACA-----------------------------------------CTTTTGCTGGCA------GTG-----------------------------GCAGCGGCGGCGGCTCCAAGC
droWil2 scf2_1100000004921:367383-367656 + TTATTG----------------------------GC---ACTGCCGCA-----------------------GTCATT----GCAAA--GA------------AACAATAAT-TTGCCTTTTGTTGTAATT----G---C--CAGGAAAA--GTATGTACCTG-CG----------CGCATGAGT----GTGTGTGTG----TGCATG-TGTGTGT------ATCTCT-------GCAAAAGGGAAAAAG-T-----------TGTACGTGTGTATGTGTGCGTTTATGGCTGTGTGTGTGT--GT--GTGTGTGTATTGAAGAAAAGTAACCATCTATACAGCTCATCTC-TC-------------CTTCCCCGTT---------------------TG--CC--CTGCCCTGCCC-TGCTCTGCTACTCTCTGGCTGTCG----------------------------A-------CT------------------GCC
droVir3 scaffold_12855:1771567-1771833 - GTGTTT----------------------------GC---GCGC--CCG-------------CTATT----GCTCATGCTCGCCTC----AT-----GAGCATCAAAATTGC------GTTTGCCACAATC----GA------AGGAAAA--GTATGTACCTG-TG----------CATGTGTGT----ATGTGTGTG----TGTGTG-TGTGTGT------ATCTTCATTCCTCGCAA-AGGGAAAAAA-TATTGTTGTAGTT----------------------------------GTAC--GC--GTGTGTGTATTCAAGAAAAGTTACCATC----------------TC-TTGTC-------CCCACG------GGCAACAACAAAATGTA------GTTGCT--G-----------TTGT--TGCTTTTGCTGCTG--------GGCCCCA---TCAACTGCGG----------------------------ACC
droMoj3 scaffold_6540:27486887-27487163 - ACACTG----------------------------TTTGCGCG--------------ACCAGGTGCT----GCTCATGCTCGGCTCA--TGAGCATT-------------GAACTTACGATTGCCGTAATC----G---A---AGGAAAA--GTATGTACCTG-TG----------CGT--------------------GTG----TG-TGTGTGTATCTGTATCTTCATTCTTTGCAA-AGGGAAAAAA--ACTGTTGTAGTT----------------------------------GTAC--GC--GTGTGTGTATTCAAGAAAAGTAACCATC----------------TC-TTGCC-------CCCACG------GGCAACAACAAAATATTCGTATTGTTGTT--G-----------TTGT--TATTTCAGCTGCTGCTGCTGTTGGCCCCA---TCAACTGCGGG-------CC------------------AGC
droGri2 scaffold_14830:157927-158184 - GTGTGTGCAGTGCCAGTGCCAGTGCAGACTGTTATTGTATTGT--GCG-------------------CGCGTCCAGG----CGCTGC---TGCTGCT-----AATGCTGCG-----------ACATAATCCCATAGCAA---ACGAAAA--GTATGTATCTG-TG----------TGTGTGAGTGAGTGAGTGTGTG----TGTGTG-TGTGTGT------ATCTTTATTCCTCGCAA-AGGGAAAAAA-TG---------TT----------------------------------GAAC--GC--GTGTGTGTATTCAAGAAAAGTAACCATC----------------TC-TTC---TT----C-TT-------------------------------------------------------------------------------GGCCCCATCATCAACTGAGGGGCATCATTC------------------TCT
droAna3 scaffold_13340:19621524-19621725 + T-GCTG----------------------------TTT-----------------------------------TAATG----GGGGCAAGAA-----GAGCGTAACCGCAAA-----------ACGAAATC----GGCG----GACAAAATCCGATGTG-ATG-CACGTCCCTCTGGAT----------------GTG----TGTGTT-TGTGTGT------ATCTCT-------GTGA-AGGGAAAAAG-T-----------------------------------------------TGT--GC----GTGTGTATTCAAGAAAAGTAAC-ATC----------------TC-------------CCCCCGCAAA-TTACAGCAGCCCA------ATA--GG--CTCCC-------------------------------------------------CCAAATGCTCC-------CC------------------ATC
droBip1 scf7180000396413:2764730-2764924 - TTGTTG-------------------------------------------------------------------GATT----GAGGCAAGAA-----GAGTGTAACCGCAAT-----------ACGGATTC----GGCGG---AAGAAAATCCGATCTG-ATG-TACGTCCCTC--------------------TTGGTGTG----TC-TGTGTGT------ATCTCT-------GTGA-AGGGAAAAAG-T-----------------------------------------------TGT--GC----GTGTGTATTCAAGAAAAGTAAC-ATC----------------TC-------------CTCCCGCAAA-TTACAGCAGCCCA------ATA--GC--CTCCC-------------------------------------------------CC-AATGCTCC-------CC------------------TTC
droKik1 scf7180000302705:123452-123652 - G-GTTG----------------------------TTGTTGC----CCG-------------CCACTGTTCGTGCATG----GAGAA----------GAGCCCAGCCGCAGA-----------ACGCAATC----GACGC---AAGAAAATCTGATGAAG-TA-CG--T--------AC----------------GTG----TGTGTGTTGTGTGT------ATCTCA-------GG-A-AGGGAAAA-G-T-----------------------------------------------TGT--GC----GTGTGTATTCAAGAAAAGTAAC-ATC----------------TC-------------CCCCCGCAAA-TTACAGCCACACA------ATA--GG--CTCTC--------------CC--------------G---------TCCC-----------------------CA------------------CAT
droFic1 scf7180000453826:644924-645110 + TTGTTG----------------------------------------------------------------GTGCATG----GAGAA----------GAGCGTAACAATAGA-----------ACGCAATC----AACGA---AAGAAAATCGGATGTCGATGGTG-----------AT------------GT---TGTGTA----AG-TGTGTGT------ATCTGAA------GCAA-AGGGAAAAAACT------------------------------------------------GTGTGC----GTGTGTATTCGAGAAAAGTAAC-ATC----------------TC-------------CCCCCGCAAA-TTA---------------CATA--GG--CTCCACCT-----CATC--CC-------------------------------------TT--GAA-------CC------------------CAA
droEle1 scf7180000491261:1539278-1539434 - GT----------------------------------------------------------------------GCATG----GAGAA--GAA-----GAGCGTAACAATAGA-----------ACGCAATC----AACGC---AAGAAAATCGGATGTG-----TG------------------------------GTTGTG----AG-TGTGTGT------ATCTGAA------GCGA-AGGGAAAA-G-TG----------------------------------------------T--------GTGTGTGTATTCGAGAAAAGTAAC-ATC----------------TC-------------CCCCCGCAAA---------------------TA--GG--CTCCCCTT-------------------------------------TC--------C-----------------------------------AACA
droRho1 scf7180000780007:83080-83246 + GTG-------------------------------------------------------------------GTGCATA----GAGAG--GAA-----GAGCGTAACAATAGA-----------ACGCAATC----AACGC---AAGAAAATCGGGTGTG-----TG-----------A-------------------TTGTG----AG-TGTGTGT------ATCTAAA------GCGA-AGGGAAAA-G-T------------------------------------------------GT--GC----GTGTGTATTCGAGAAAAGTAAC-ATC----------------TT-------------CCCCCGCAAA-TTA---------------CATA--GG--CTCCCCTT-------------------------------------TCCT-----------------------CC------------------AAG
droBia1 scf7180000302075:1882291-1882494 + GGGTTT----------------------------TC---------------------------------GGTGCATG----GAGAA--GAA-----GAGCGTAACAATAGA-----------ACGCAATC----AACGC---AAGAAAATCGGATGTGGATG-CG-----------AT------------GTGAGTG----AGTGTG-TGTGTGT------ATCTCG-------GA-A-AGGGAAAAAG-TG----------------------------------------------TGT--GC--GTTTGTGTATTCGAGAAAAGTAAC-ATC----------------TC-------------CCCCCGCACA-TTA---------------CATA--GG--CTCCCCCGCCC-CGCTCTGCC--------------G---------A------------CCGCCTC-------GC------------------AGT
droTak1 scf7180000415700:440130-440325 - TTGTTG----------------------------TTT------------------------------TCGGTGCATG----GAGAA--GAA-----GAGCGTAACAATAGA-----------ACGCAATC----AACGC---AAGAAAATCGGATGTGGATT-TG-----------AC--------------------GTGAGTGTG-TGTGTGT------ATCTCA-------A-AA-AGGGAAAA-G-TA----------------------------------------------TGT--GC--GTGTGTGTATTCGAGAAAAGTAAC-ATC----------------TC-------------CCCCCGCAAA-TTA---------------CATA--GG--CTCCACC-----CCCTCTGCC--------------G---------C------------CC--GCA-------CC------------------AGC
droEug1 scf7180000409770:537464-537656 - ATGTTG----------------------------TTG------------------------------TCGGTGCATG----GAGAA--GAA--GAGAAGCGCAACAATAGA-----------ACGCAATC----AACGC---AAGAAAATCGGATGTGGATG-TG-----------AT--------------------GTG----AG-TGTGTGT------ATCTCT-------GA-A-AGGGAAAA-A-TA----------------------------------------------TGT--GC----GTGTGTATTCGAGAAAAGTAAC-ATC----------------TC-------------CTCCCGCAAA-TTA---------------CATG--GG--CTCCCTCGCCCGCCCTCTGCC--------------G---------A--------------------------CC------------------CCA
dm3 chr3R:23070620-23070830 - GTGTTG----------------------------TTGTTTCGC--CCG-------------------TTGTTGCATG----GAGCAA---AGCGAAAAACGTAACAATAGA-----------ACGCAATC----AACGC---AAGAAAATCGGATGTGGATG-CG-----------AT--------------------GTG----AG-TGTGTGT------ATCTCT-------GAAA-TGGGAAAA-G-TG----------------------------------------------TGT--GC--GTGTGTGTATTCGAGAAAAGTAAC-CTC----------------TC---AC--------CCCCCGCGAACTTACATATA-----TGTACATT--GG--CTCCA-------------------------------------------------AT-GCTGCTAT-------CC------------------CGC
droSim2 3r:22512340-22512551 - GTGTTG----------------------------TTGTTTCGC--CCG-------------------TTGGTGCATG----GAGCAA---AGCGAGAAACGTAACAATAGA-----------ACGCAATC----AACGC---AAGAAAATCGGATGTGGCTG-CG-----------AT--------------------GTG----AG-TGTGTGT------ATCTCT-------GAAA-TGGGAAAA-G-TG----------------------------------------------TGT--GC--GTGTGTGTATTCGAGAAAAGTAAC-CTC----------------TC---ACC-------CCCCCGCGAACTTACATATA-----TGTACATA--GG--CTCCA-------------------------------------------------AT-GCTGCTAC-------CC------------------CGC
droSec2 scaffold_13:1824891-1825087 - GTGTTG----------------------------TTGTTTCGC--CCG-------------------TTGGTGCATG----GAGCAA---AGCGAGAAACGTAACAATAGA-----------ACGCAATC----AACGC---AAGAAAATCGGATGTGGCTG-CG-----------AT--------------------GTG----AG-TGTGTGT------ATCTCT-------GAAA-TGGGAAAA-G-TG----------------------------------------------TGT--GC--GTGTGTGTATTTGAGAAATGTAAC-CTC----------------TC---ACC------CCCCCCGCGAACTTACATATA-----TGTACATA--GG--CTCC-------------------------------------------------------------------------------------------
droYak3 3R:23422947-23423135 + TTGTTG----------------------------TT---TCGT--CTG-------------------TTGGTGCATG----GAGCAA---AGCGAGAAACGTAACAATAGA-----------ACGCAATC----AACGC---AAGAAAATCGGATGTGGCTG-CG-----------AT--------------------GTG----AG-TGTGTGT------ATCTCT-------GAAA-TGGGAAAA-G-TG----------------------------------------------TGT--GC--GTGTGTGTATTCGAGAAAAGTAAC-CTC----------------GC-------------CCCCCGCAAAATTACAT-----------ACATA--GG--CTCCC-------------------------------------------------A-------------------------------------CAC
droEre2 scaffold_4820:4963390-4963590 + GTGTTG----------------------------TTGTTTCCC--CCG-------------------TTTGTGCATG----GAGCAA---AGCGAGAAACGTAACAATAGA-----------ACGCAATC----AACGC---AAGAAAATCGGATGTGGCTG-CG-----------AT--------------------GTG----AG-TGTGTGT------ATCTCT-------GAAA-TGGGAAAA-G-TG----------------------------------------------TGT--GCGTGTGTGTGTATTCGAGGAAAGTTAC-CGC----------------TC---CCCCCA----G-CCCGCAAAATTACAT-----------ACATA--GG--CTCCC-------------------------------------------------CC-----------------------------------AACC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
GTGTTG----------------------------TC---TCTCCCCCATCCCCCCGGCAATCTGCT----ACTCATG----GAGAA--TAAGTAAA-------------GAATGCACTGTGGCCGTAATC----GACTCACCAAAAAAAGTTGATGTTG-T-----------------------------GTGTGTG----TGTGTG-TGTGTGT------ATCTCT-------GCAA-AGGGAAAA-G-T-----------------------------------------------TGT--GC--GTGTGTGTATTGAAGAAAAGTAACCATCGAAT--------CGC-TCC-C--C-TCCTTCGCTTTGCGCACTTACAACTACA-----------------------------------------CTTTTGCTGGCA------GTG-----------------------------GCAGCGGCGGCGGCTCCAAGCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................................................................................AAGTAAA-------------GAATGCACTGTGG..........................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...........................................................................................................................................................................................................................................CAA-AGGGAAAA-G-T-----------------------------------------------TGT--GC--GTG..............................................................................................................................................................................................2111.0010000001000
...............................................ATCCCCCCGGCAATCTGCT----ACTCATG----GA.................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000000
........................................................................TCATG----GAGAA--TAAGTAAA-------------GAATGCAC...............................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA------GTG-----------------------------GCAGCGGCGGCGGCT......2120.5010100000000
........................................................................................................................................................GATGTTG-T-----------------------------GTGTGTG----TGTGT......................................................................................................................................................................................................................................................................................................2030.3310100000000
..........................................................................................................................................................................................................................................................T-----------------------------------------------TGT--GC--GTGTGTGTATTT.....................................................................................................................................................................................18190.0510100000000
droPer2
GTGTTG----------------------------TC---TCTCCCCCATCC-CCCGGCAATCTGCT----ACTCATG----GAGAA--TAAGTAAA-------------GAATGCACTGTGGCCGTAATC----GACTCACCAAAAAAAGTTGATGTT------------------------------------GTG----TGTGTG-TGTGTGT------ATCTCT-------GCAA-AGGGAAAA-G-T-----------------------------------------------TGT--GC--GTGTGTGTATTGAAGAAAAGTAACCATCGAAT--------CGCCCCC-C--C-TCCCTCGCTTTGCGCACTTACAACTACA-----------------------------------------CTTTTGCTGGCA------GTG-----------------------------GCAGCGGCGGCGGCTCCAAGCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......................................................GGCAATCTGCT----ACTCATG----GAG................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
...............................................ATCC-CCCGGCAATCTGCT----ACTCATG----GA.................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
............................................................................................................................................................TT------------------------------------GTG----TGTGTG-TGTGTGT------A......................................................................................................................................................................................................................................................................................19200.051000001
droWil2
TTATTG----------------------------GC---ACTGCCGCA-----------------------GTCATT----GCAAA--GA------------AACAATAAT-TTGCCTTTTGTTGTAATT----G---C--CAGGAAAA--GTATGTACCTG-CG----------CGCATGAGT----GTGTGTGTG----TGCATG-TGTGTGT------ATCTCT-------GCAAAAGGGAAAAAG-T-----------TGTACGTGTGTATGTGTGCGTTTATGGCTGTGTGTGTGT--GT--GTGTGTGTATTGAAGAAAAGTAACCATCTATACAGCTCATCTC-TC-------------CTTCCCCGTT---------------------TG--CC--CTGCCCTGCCC-TGCTCTGCTACTCTCTGGCTGTCG----------------------------A-------CT------------------GCCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................................................................................................................TTTGTTGTAATT----G---C--CAGGAAAA--GT...........................................................................................................................................................................................................................................................................................................................................................2411.00100100
..........................................................................................................ATAAT-TTGCCTTTTGTTGTAAT...................................................................................................................................................................................................................................................................................................................................................................................2211.00101000
........................................................................................................................TGTTGTAATT----G---C--CAGGAAAA--.............................................................................................................................................................................................................................................................................................................................................................2011.00100010
.................................................................................................................TGCCTTTTGTTGTAATT----G---C--C......................................................................................................................................................................................................................................................................................................................................................................2011.00100010
.............................................................................................................................................................................................TGTGTGTG----TGCATG-TGTG................................................................................................................................................................................................................................................................................................18200.05100010
droVir3
GTGTTT----------------------------GC---GCGC--CCG-------------CTATT----GCTCATGCTCGCCTC----AT-----GAGCATCAAAATTGC------GTTTGCCACAATC----GA------AGGAAAA--GTATGTACCTG-TG----------CATGTGTGT----ATGTGTGTG----TGTGTG-TGTGTGT------ATCTTCATTCCTCGCAA-AGGGAAAAAA-TATTGTTGTAGTT----------------------------------GTAC--GC--GTGTGTGTATTCAAGAAAAGTTACCATC----------------TC-TTGTC-------CCCACG------GGCAACAACAAAATGTA------GTTGCT--G-----------TTGT--TGCTTTTGCTGCTG--------GGCCCCA---TCAACTGCGG----------------------------ACCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....................................................................................................................................................................................................................................TTCCTCGCAA-AGGGAAAA.............................................................................................................................................................................................................................................................1811.001000000001000000000000000000000000000000000000000000000000000000
.........................................................................................................AATTGC------GTTTGCCACAATC----GA------AGGAAA................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000010000000000000000000000000000
..............................................CG-------------CTATT----GCTCATGCTCGCCTC----A..........................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000000000000000000000000000000000000000000000000000000000000
...........................................................................................................TTGC------GTTTGCCACAATC----GA------AG....................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000010000000000000000000000000000000000000000000000000
droMoj3
ACACTG----------------------------TTTGCGCG--------------ACCAGGTGCT----GCTCATGCTCGGCTCA--TGAGCATT-------------GAACTTACGATTGCCGTAATC----G---A---AGGAAAA--GTATGTACCTG-TG----------CGT--------------------GTG----TG-TGTGTGTATCTGTATCTTCATTCTTTGCAA-AGGGAAAAAA--ACTGTTGTAGTT----------------------------------GTAC--GC--GTGTGTGTATTCAAGAAAAGTAACCATC----------------TC-TTGCC-------CCCACG------GGCAACAACAAAATATTCGTATTGTTGTT--G-----------TTGT--TATTTCAGCTGCTGCTGCTGTTGGCCCCA---TCAACTGCGGG-------CC------------------AGCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................................................CAGGTGCT----GCTCATGCTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
......................................CGCG--------------ACCAGGTGCT----GCTCATGCTCGGCT................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
.................................................................................................................................................................................T--------------------GTG----TG-TGTGTGTATCTGTA......................................................................................................................................................................................................................................................................................20130.081000001
droGri2
GTGTGTGCAGTGCCAGTGCCAGTGCAGACTGTTATTGTATTGT--GCG-------------------CGCGTCCAGG----CGCTGC---TGCTGCT-----AATGCTGCG-----------ACATAATCCCATAGCAA---ACGAAAA--GTATGTATCTG-TG----------TGTGTGAGTGAGTGAGTGTGTG----TGTGTG-TGTGTGT------ATCTTTATTCCTCGCAA-AGGGAAAAAA-TG---------TT----------------------------------GAAC--GC--GTGTGTGTATTCAAGAAAAGTAACCATC----------------TC-TTC---TT----C-TT-------------------------------------------------------------------------------GGCCCCATCATCAACTGAGGGGCATCATTC------------------TCTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
T-GCTG----------------------------TTT-----------------------------------TAATG----GGGGCAAGAA-----GAGCGTAACCGCAAA-----------ACGAAATC----GGCG----GACAAAATCCGATGTG-ATG-CACGTCCCTCTGGAT----------------GTG----TGTGTT-TGTGTGT------ATCTCT-------GTGA-AGGGAAAAAG-T-----------------------------------------------TGT--GC----GTGTGTATTCAAGAAAAGTAAC-ATC----------------TC-------------CCCCCGCAAA-TTACAGCAGCCCA------ATA--GG--CTCCC-------------------------------------------------CCAAATGCTCC-------CC------------------ATCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.................................................................................................................................................................................................................................................GGAAAAAG-T-----------------------------------------------TGT--GC----GTGT...........................................................................................................................................................................................1811.001010000
droBip1
TTGTTG-------------------------------------------------------------------GATT----GAGGCAAGAA-----GAGTGTAACCGCAAT-----------ACGGATTC----GGCGG---AAGAAAATCCGATCTG-ATG-TACGTCCCTC--------------------TTGGTGTG----TC-TGTGTGT------ATCTCT-------GTGA-AGGGAAAAAG-T-----------------------------------------------TGT--GC----GTGTGTATTCAAGAAAAGTAAC-ATC----------------TC-------------CTCCCGCAAA-TTACAGCAGCCCA------ATA--GC--CTCCC-------------------------------------------------CC-AATGCTCC-------CC------------------TTCSizeHit CountTotal NormTotal
No Reads
droKik1
G-GTTG----------------------------TTGTTGC----CCG-------------CCACTGTTCGTGCATG----GAGAA----------GAGCCCAGCCGCAGA-----------ACGCAATC----GACGC---AAGAAAATCTGATGAAG-TA-CG--T--------AC----------------GTG----TGTGTGTTGTGTGT------ATCTCA-------GG-A-AGGGAAAA-G-T-----------------------------------------------TGT--GC----GTGTGTATTCAAGAAAAGTAAC-ATC----------------TC-------------CCCCCGCAAA-TTACAGCCACACA------ATA--GG--CTCTC--------------CC--------------G---------TCCC-----------------------CA------------------CATSizeHit CountTotal NormTotal
No Reads
droFic1
TTGTTG----------------------------------------------------------------GTGCATG----GAGAA----------GAGCGTAACAATAGA-----------ACGCAATC----AACGA---AAGAAAATCGGATGTCGATGGTG-----------AT------------GT---TGTGTA----AG-TGTGTGT------ATCTGAA------GCAA-AGGGAAAAAACT------------------------------------------------GTGTGC----GTGTGTATTCGAGAAAAGTAAC-ATC----------------TC-------------CCCCCGCAAA-TTA---------------CATA--GG--CTCCACCT-----CATC--CC-------------------------------------TT--GAA-------CC------------------CAASizeHit CountTotal NormTotal
No Reads
droEle1
GT----------------------------------------------------------------------GCATG----GAGAA--GAA-----GAGCGTAACAATAGA-----------ACGCAATC----AACGC---AAGAAAATCGGATGTG-----TG------------------------------GTTGTG----AG-TGTGTGT------ATCTGAA------GCGA-AGGGAAAA-G-TG----------------------------------------------T--------GTGTGTGTATTCGAGAAAAGTAAC-ATC----------------TC-------------CCCCCGCAAA---------------------TA--GG--CTCCCCTT-------------------------------------TC--------C-----------------------------------AACASizeHit CountTotal NormTotal
No Reads
droRho1
GTG-------------------------------------------------------------------GTGCATA----GAGAG--GAA-----GAGCGTAACAATAGA-----------ACGCAATC----AACGC---AAGAAAATCGGGTGTG-----TG-----------A-------------------TTGTG----AG-TGTGTGT------ATCTAAA------GCGA-AGGGAAAA-G-T------------------------------------------------GT--GC----GTGTGTATTCGAGAAAAGTAAC-ATC----------------TT-------------CCCCCGCAAA-TTA---------------CATA--GG--CTCCCCTT-------------------------------------TCCT-----------------------CC------------------AAGSizeHit CountTotal NormTotal
No Reads
droBia1
GGGTTT----------------------------TC---------------------------------GGTGCATG----GAGAA--GAA-----GAGCGTAACAATAGA-----------ACGCAATC----AACGC---AAGAAAATCGGATGTGGATG-CG-----------AT------------GTGAGTG----AGTGTG-TGTGTGT------ATCTCG-------GA-A-AGGGAAAAAG-TG----------------------------------------------TGT--GC--GTTTGTGTATTCGAGAAAAGTAAC-ATC----------------TC-------------CCCCCGCACA-TTA---------------CATA--GG--CTCCCCCGCCC-CGCTCTGCC--------------G---------A------------CCGCCTC-------GC------------------AGTSizeHit CountTotal NormTotal
No Reads
droTak1
TTGTTG----------------------------TTT------------------------------TCGGTGCATG----GAGAA--GAA-----GAGCGTAACAATAGA-----------ACGCAATC----AACGC---AAGAAAATCGGATGTGGATT-TG-----------AC--------------------GTGAGTGTG-TGTGTGT------ATCTCA-------A-AA-AGGGAAAA-G-TA----------------------------------------------TGT--GC--GTGTGTGTATTCGAGAAAAGTAAC-ATC----------------TC-------------CCCCCGCAAA-TTA---------------CATA--GG--CTCCACC-----CCCTCTGCC--------------G---------C------------CC--GCA-------CC------------------AGCSizeHit CountTotal NormTotal
No Reads
droEug1
ATGTTG----------------------------TTG------------------------------TCGGTGCATG----GAGAA--GAA--GAGAAGCGCAACAATAGA-----------ACGCAATC----AACGC---AAGAAAATCGGATGTGGATG-TG-----------AT--------------------GTG----AG-TGTGTGT------ATCTCT-------GA-A-AGGGAAAA-A-TA----------------------------------------------TGT--GC----GTGTGTATTCGAGAAAAGTAAC-ATC----------------TC-------------CTCCCGCAAA-TTA---------------CATG--GG--CTCCCTCGCCCGCCCTCTGCC--------------G---------A--------------------------CC------------------CCASizeHit CountTotal NormTotal
No Reads
dm3
GTGTTG----------------------------TTGTTTCGC--CCG-------------------TTGTTGCATG----GAGCAA---AGCGAAAAACGTAACAATAGA-----------ACGCAATC----AACGC---AAGAAAATCGGATGTGGATG-CG-----------AT--------------------GTG----AG-TGTGTGT------ATCTCT-------GAAA-TGGGAAAA-G-TG----------------------------------------------TGT--GC--GTGTGTGTATTCGAGAAAAGTAAC-CTC----------------TC---AC--------CCCCCGCGAACTTACATATA-----TGTACATT--GG--CTCCA-------------------------------------------------AT-GCTGCTAT-------CC------------------CGCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................................................................................................................................................ATG-CG-----------AT--------------------GTG----AG-TGTGTG..............................................................................................................................................................................................................................................................................................1815.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000010100000000000000000000000100000000000000000001000000000000000000
..........................................................................ATG----GAGCAA---AGCGAAAAACGTAAC...........................................................................................................................................................................................................................................................................................................................................................................................................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................CT-------GAAA-TGGGAAAA-G-TG----------------------------------------------TG........................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000010000000000000000
...........................................................................................................................................................GTGGATG-CG-----------AT--------------------GTG----AG-TG..................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000010000000000000000000000
.......................................................................................................................................ACGC---AAGAAAATCGGATGTGGT....................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................................................................................................................AAGAAAATCGGATGTGGATG-C................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000100000000000
...........................................................................TG----GAGCAA---AGCGAAAAAC................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000
...............................................................................................................................................................ATG-CG-----------AT--------------------GTG----AG-TGTGTGT------A......................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000001000
..........................................................................................................................................C---AAGAAAATCGGATGTGGAT...................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................TGTTTCGC--CCG-------------------TTGTTGCATG----...................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................ATG----GAGCAA---AGCGAAAAACGT..............................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...............................................................................................................................................................ATG-CG-----------AT--------------------GTG----AG-TGTGTGT------ATCTCT-------G.........................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
.........................................................................................................................................................ATGTGGATG-CG-----------AT--------------------GTG----AG-TGTG................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................GT------ATCTCT-------GAAA-TGGGAAAA-G-TG----------------------------------------------..........................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................TC----AACGC---AAGAAAATCGGATGTGGA....................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................TGGATG-CG-----------AT--------------------GTG----AG-TGTGTGT------AT.....................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.........................................................................................................................................................ATGTGGATG-CG-----------AT--------------------GTG----AG-TGTT................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................ATC----AACGC---AAGAAAATCGGATGTGGA....................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................................................................................................................C---AAGAAAATCGGATGTGGATG-.................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
............................................................................................CGAAAAACGTAACAATAGA-----------ACG.......................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................CGC--CCG-------------------TTGTTGCATG----GAG................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
......................................TTCGC--CCG-------------------TTGTTGCATG----GAGCAA---AGCGAA....................................................................................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................TGTGGATG-CG-----------AT--------------------GTG----AG-T...................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
..........................................C--CCG-------------------TTGTTGCATG----GAGCAA---AGCG......................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................................................................................................................................................................................................................................................................................................................GAAAAGTAAC-CTC----------------TC---AC--------CCCC..................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
GTGTTG----------------------------TTGTTTCGC--CCG-------------------TTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................G-CG-----------AT--------------------GTG----AG-TGTGTGT------A......................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.............................................CCG-------------------TTGTTGCATG----GAGCAA---AA........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................GTTTCGC--CCG-------------------TTGTTGCATG----G..................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
..............................................................................................................................................................................................................................TCTCT-------GAAA-TGGGAAAA-G-TG----------------------------------------------..........................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................CG-----------AT--------------------GTG----AG-TGTGTGT------ATCTCT-------..........................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
......................................TTCGC--CCG-------------------TTGTTGCATG----GAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........................................CGC--CCG-------------------TTGTTGCATG----GAGCAA---AG........................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.......................................................................................................ACAATAGA-----------ACGCAATC----AACG..........................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...........................................................................................GCGAAAAACGTAACAATAGA-----------ACGCAATC----..............................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................TCTCT-------GAAA-TGGGAAAA-G-TG----------------------------------------------T.........................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.............................................................................................................................................................GGATG-CG-----------AT--------------------GTG----AG-TGTGTG..............................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
..............................................CG-------------------TTGTTGCATG----GAGCAA---AGC.......................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
......................................TTCGC--CCG-------------------TTGTTGCATG----GAG................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........................................................................CATG----GAGCAA---AGCGAAAAAC................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................TGTATTCGAGAAAAGTAAC-CT......................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
......................................................................................................................................AACGC---AAGAAAATCGGATGTGG.....................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..............................................................................................................................AATC----AACGC---AAGAAAATCGGA..........................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................................TGTTTCGC--CCG-------------------TTGTTGCATG----G..................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................GTTGCATG----GAGCAA---AGCGAAAAACGTA.............................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
.....................................TTTCGC--CCG-------------------TTGTTGCATG----GA.................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.........................................................................................................................................................ATGTGGATG-CG-----------AT--------------------GTG----AG-TGT.................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................GGATG-CG-----------AT--------------------GTG----AG-TGTG................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................AAA-G-TG----------------------------------------------TGT--GC--GTGTGTGTATTCG....................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.......................................TCGC--CCG-------------------TTGTTGCATG----GAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................TGTTGCATG----GAGCAA---AGCGAAAAACG...............................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................................................ATG----GAGCAA---AGCGAAAAACGTT.............................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
..........................................................................................................................................................TGTGGATG-CG-----------AT--------------------GTG----AG-C...................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GTGTTG----------------------------TTGTTTCGC--CCG-------------------TTGGTGCATG----GAGCAA---AGCGAGAAACGTAACAATAGA-----------ACGCAATC----AACGC---AAGAAAATCGGATGTGGCTG-CG-----------AT--------------------GTG----AG-TGTGTGT------ATCTCT-------GAAA-TGGGAAAA-G-TG----------------------------------------------TGT--GC--GTGTGTGTATTCGAGAAAAGTAAC-CTC----------------TC---ACC-------CCCCCGCGAACTTACATATA-----TGTACATA--GG--CTCCA-------------------------------------------------AT-GCTGCTAC-------CC------------------CGCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................................GTTTCGC--CCG-------------------TTGGTGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
.....................................TTTCGC--CCG-------------------TTGGTGCATG----GAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000000000
...............................................................................................................................ATC----AACGC---AAGAAAATCGGATGTGGC....................................................................................................................................................................................................................................................................................................................................................2611.00100000000001000000
GTGTTG----------------------------TTGTTTCGC--CCG-------------------T................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000000001000000
................................................................................................................................................................................................................TGTGTGT------ATCTCT-------GAAA-TGGG.................................................................................................................................................................................................................................................................2111.00100000001000000000
.........................................................................................................................................GC---AAGAAAATCGGATGTG......................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
.................................................................................................AACGTAACAATAGA-----------ACGCAATC----AACGC---AA....................................................................................................................................................................................................................................................................................................................................................................2911.00100000000000001000
droSec2
GTGTTG----------------------------TTGTTTCGC--CCG-------------------TTGGTGCATG----GAGCAA---AGCGAGAAACGTAACAATAGA-----------ACGCAATC----AACGC---AAGAAAATCGGATGTGGCTG-CG-----------AT--------------------GTG----AG-TGTGTGT------ATCTCT-------GAAA-TGGGAAAA-G-TG----------------------------------------------TGT--GC--GTGTGTGTATTTGAGAAATGTAAC-CTC----------------TC---ACC------CCCCCCGCGAACTTACATATA-----TGTACATA--GG--CTCC-------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........................................................................ATG----GAGCAA---AGCGAGAAAC................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
......................................TTCGC--CCG-------------------TTGGTGCATG----GAGCAA---AGC.......................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000
........................................................................................................................................CGC---AAGAAAATCGGATGTGA.....................................................................................................................................................................................................................................................................................................................................................2011.0011000
..........................................................................ATG----GAGCAA---AGCGAGAAACG...............................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
...........................................................................TG----GAGCAA---AGCGAGAAACG...............................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001
....TG----------------------------TTGTTTCGC--CCG-------------------TTGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100
.........................................GC--CCG-------------------TTGGTGCATG----GAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000
......................................................................................................................................AACGC---AAGAAAATCGGATGTGGC....................................................................................................................................................................................................................................................................................................................................................2311.0010100
droYak3
TTGTTG----------------------------TT---TCGT--CTG-------------------TTGGTGCATG----GAGCAA---AGCGAGAAACGTAACAATAGA-----------ACGCAATC----AACGC---AAGAAAATCGGATGTGGCTG-CG-----------AT--------------------GTG----AG-TGTGTGT------ATCTCT-------GAAA-TGGGAAAA-G-TG----------------------------------------------TGT--GC--GTGTGTGTATTCGAGAAAAGTAAC-CTC----------------GC-------------CCCCCGCAAAATTACAT-----------ACATA--GG--CTCCC-------------------------------------------------A-------------------------------------CACSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...................................T---TCGT--CTG-------------------TTGGTGCATG----GAGCAA---AGC.......................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
.....G----------------------------TT---TCGT--CTG-------------------TTGGTGCATG----GAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
...............................................G-------------------TTGGTGCATG----GAGCAA---AGCGAGAAAC................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
..................................................................................................................................................................................................................................................GAAAA-G-TG----------------------------------------------TGT--GC--GTGTGT...........................................................................................................................................................................................1920.50100000010000
droEre2
GTGTTG----------------------------TTGTTTCCC--CCG-------------------TTTGTGCATG----GAGCAA---AGCGAGAAACGTAACAATAGA-----------ACGCAATC----AACGC---AAGAAAATCGGATGTGGCTG-CG-----------AT--------------------GTG----AG-TGTGTGT------ATCTCT-------GAAA-TGGGAAAA-G-TG----------------------------------------------TGT--GCGTGTGTGTGTATTCGAGGAAAGTTAC-CGC----------------TC---CCCCCA----G-CCCGCAAAATTACAT-----------ACATA--GG--CTCCC-------------------------------------------------CC-----------------------------------AACCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................................................................................................................................................................................................................................................................................................................................GTTAC-CGC----------------TC---CCCCCA----G-CCCGC...............................................................................................................................2211.0010100000
......................................................................GTGCATG----GAGCAA---AGCGAG....................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
...........................................................................................................................CGCAATC----AACGC---AAGAAAATCGGAT.........................................................................................................................................................................................................................................................................................................................................................2511.0010100000

Generated: 05/17/2015 at 10:27 PM