ID:

dps_37

 Coordinate:

XL_group1e:8373854-8373915 -

 Confidence:

candidate-rescued

 Class:

Testes-restricted

 Genomic Locale:

intergenic

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-25.4 -25.4 -25.3

Flybase annnotation

intergenic

No Repeatable elements found

mature

  1. dps_37  XL_group1e:8373893-8373915 -
  2. dps-mir-2517a-2  XL_group1e:8378088-8378110 -
  3. dps-mir-2517a-3  XL_group1e:8380490-8380512 -
  4. dps-mir-2517a-1  Unknown_singleton_1920:1615-1637 +
star

  1. dps_37  XL_group1e:8373854-8373869 -
  2. dps_245  XL_group1e:8374602-8374617 -
  3. dps-mir-2517a-2  XL_group1e:8378049-8378064 -
  4. dps-mir-2517a-3  XL_group1e:8380451-8380466 -
  5. dps-mir-2517a-1  Unknown_singleton_1920:1661-1676 +

Sense Strand Reads

TGGGCGAATAAACGAGTGCGAATAGCCGCCGGGTCAAATGGTCCAGAGTTTTCAGATCCTCAAATACCATATGTATTATTTGACTTTCAGATAGATTTGGTGGATTTGAAAACTTTTCACTTAAGAACACTTGATACAAGTCTCTATCTCAACGAATATTTT

***********************************....(((..(((((((((((((((((((((..........((((((((...)))))))))))))).)))))))))))))))..)))......*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902011

testis

 M040

female body

 V112

male body		 M062

head

 M059

embryo

 GSM343916

embryo

 M022

male body		 GSM444067

head

 SRR902012

CNS imaginal disc

 SRR902010

ovaries
..................................................TTCAGATCCTCAAATACCATATG......................................................................................... 23 0 4 154.75 619 502 32 25 15 12 11 15 6 1 0
..................................................TTCAGATCCTCAAATACCATAT.......................................................................................... 22 0 4 59.25 237 143 38 24 7 7 13 0 3 1 1
..................................................TTCAGATCCTCAAATACCATA........................................................................................... 21 0 4 8.25 33 16 7 4 3 1 0 1 1 0 0
..................................................TTCAGATCCTCAAATACCATATC......................................................................................... 23 1 4 5.50 22 15 0 5 2 0 0 0 0 0 0
..................................................TTCAGATCCTCAAATACCATATGA........................................................................................ 24 1 4 5.00 20 19 0 1 0 0 0 0 0 0 0
..................................................TTCAGATCCTCAAATACCATATGT........................................................................................ 24 0 4 4.75 19 5 3 10 0 0 0 0 1 0 0
..................................................TTCAGATCCTCAAATACCATATGTAT...................................................................................... 26 0 4 3.25 13 12 1 0 0 0 0 0 0 0 0
..................................................TTCAGATCCTCAAATACCATAA.......................................................................................... 22 1 4 2.75 11 10 0 0 1 0 0 0 0 0 0
...........................................................................................TATATTTGGTGGATTTGAAAA.................................................. 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0
..................................................TTCAGATCCTCAAATACCAT............................................................................................ 20 0 4 1.75 7 2 4 1 0 0 0 0 0 0 0
..................................................TTCAGATCCTCAAATACCATATT......................................................................................... 23 1 4 1.75 7 6 0 1 0 0 0 0 0 0 0
..................................................TTCAGATCCTCAAATACCATATGTC....................................................................................... 25 1 4 1.50 6 3 0 3 0 0 0 0 0 0 0
...................................................TCAGATCCTCAAATACCATATG......................................................................................... 22 0 4 1.50 6 1 3 0 0 2 0 0 0 0 0
...................................................TCAGATCCTCAAATACCATAT.......................................................................................... 21 0 4 1.25 5 0 5 0 0 0 0 0 0 0 0
..................................................TTCAGATCCTCAAATACCATATCCC....................................................................................... 25 3 4 1.00 4 2 1 0 1 0 0 0 0 0 0
.........................................................................................AATAGATCTGGTGGATTTGAA.................................................... 21 2 1 1.00 1 0 0 0 0 0 0 0 1 0 0
..................................................TTCAGATCCTCAAATACCATATGTA....................................................................................... 25 0 4 1.00 4 4 0 0 0 0 0 0 0 0 0
..................................................TTCAGATCCTCAAATACCATATGTCC...................................................................................... 26 2 4 0.75 3 1 0 2 0 0 0 0 0 0 0
..................................................TTCAGATCCTCAAATACCATATCA........................................................................................ 24 2 4 0.75 3 3 0 0 0 0 0 0 0 0 0
..................................................TTCAGATCCTCAAATACCATATCC........................................................................................ 24 2 4 0.75 3 3 0 0 0 0 0 0 0 0 0
.........................................................................................GATTGATTTGGTGGATTTGAAA................................................... 22 1 5 0.60 3 1 0 2 0 0 0 0 0 0 0
..................................................TTAAGATCCTCAAATACCATATG......................................................................................... 23 1 4 0.50 2 0 0 0 0 2 0 0 0 0 0
..................................................TTCAGATCCTCAAATACCATATGC........................................................................................ 24 1 4 0.50 2 1 0 0 0 1 0 0 0 0 0
....................................................................................TATCAGAGAGATTTGGTGGACT........................................................ 22 3 2 0.50 1 0 0 0 0 0 1 0 0 0 0
.......................................................................................CAGCTCGATTTGGTGGATT........................................................ 19 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0
..................................................TTCAGATCCTCAAATACCATATGAAAA..................................................................................... 27 3 4 0.50 2 2 0 0 0 0 0 0 0 0 0
.........................................................................................TATAGATTTGGTGGATTTGAAAA.................................................. 23 1 5 0.40 2 1 0 1 0 0 0 0 0 0 0
.........................................................................................GATTGATTTGGTGGATTTGA..................................................... 20 1 5 0.40 2 0 0 2 0 0 0 0 0 0 0
..................................................TTCAGATCCTCAAATAC............................................................................................... 17 0 6 0.33 2 2 0 0 0 0 0 0 0 0 0
..................................................TTCAGATCCTCAAATACCATATGTAAA..................................................................................... 27 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0
...................................................TCAGATCCTCAAATACCATATGT........................................................................................ 23 0 4 0.25 1 0 1 0 0 0 0 0 0 0 0
..................................................TTCATATCCTCAAATACCATATG......................................................................................... 23 1 4 0.25 1 0 0 0 1 0 0 0 0 0 0
..................................................TTCAGATCCTCAAATACCATATCCT....................................................................................... 25 3 4 0.25 1 0 0 0 0 0 0 0 1 0 0
.................................................TTTCAGATCCTCAAATACCATATG......................................................................................... 24 0 4 0.25 1 0 0 0 0 0 0 1 0 0 0
................................................TCTTCAGATCCTCAAATACCATATG......................................................................................... 25 1 4 0.25 1 0 0 0 1 0 0 0 0 0 0
..................................................TTCAGATCCTCAAATACCATATGTCT...................................................................................... 26 1 4 0.25 1 0 0 1 0 0 0 0 0 0 0
...................................................TCAGATCCTCAAATACCATATGTA....................................................................................... 24 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0
..................................................TTCAGATCCTCAAATACCATT........................................................................................... 21 1 4 0.25 1 0 1 0 0 0 0 0 0 0 0
..................................................TTTAGATCCTCAAATACCATAT.......................................................................................... 22 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0
..................................................TGCAGATCCTCAAATACCATA........................................................................................... 21 1 4 0.25 1 0 0 0 1 0 0 0 0 0 0
..................................................TTCAGACCCTCAAATACCATATG......................................................................................... 23 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0
..................................................TTCAGATCCTCAAATACCATCTG......................................................................................... 23 1 4 0.25 1 0 0 1 0 0 0 0 0 0 0
..................................................TTCAGATCCTCAAATACCATATA......................................................................................... 23 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0
..................................................TTCAGATCCTCACATACCATAT.......................................................................................... 22 1 4 0.25 1 0 0 0 0 1 0 0 0 0 0
..................................................TTCAGATCCTCAAATATCATATGT........................................................................................ 24 1 4 0.25 1 0 0 1 0 0 0 0 0 0 0
.................................................CCTCAGATCCTCAAATACCATA........................................................................................... 22 2 4 0.25 1 0 0 0 1 0 0 0 0 0 0
..................................................TTCAGATCCTCAAATACCATATGCCC...................................................................................... 26 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0
..................................................TTCAGATCCTCAAATACCATATGTATT..................................................................................... 27 0 4 0.25 1 0 1 0 0 0 0 0 0 0 0
..................................................TTCAGATCCTCAAATACCAC............................................................................................ 20 1 4 0.25 1 0 0 0 0 1 0 0 0 0 0
..................................................TTCAGATCCTCAAATACCATATGTCA...................................................................................... 26 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0
..................................................TGAAGATCCTCAAATACCATAT.......................................................................................... 22 2 4 0.25 1 0 0 0 1 0 0 0 0 0 0
..................................................TTCAGATCCTCAAATACCGTATG......................................................................................... 23 1 4 0.25 1 0 0 0 0 1 0 0 0 0 0
..................................................TTCAGATCCTCAAATACCATATGTAC...................................................................................... 26 1 4 0.25 1 0 0 0 1 0 0 0 0 0 0
..................................................TGCAGATCCTCAAATACCATAT.......................................................................................... 22 1 4 0.25 1 0 0 0 1 0 0 0 0 0 0
..................................................TTCAGATCCTCAAATACCATAC.......................................................................................... 22 1 4 0.25 1 0 0 0 0 1 0 0 0 0 0
..................................................TTCAAATCCTCAAATACCATATG......................................................................................... 23 1 4 0.25 1 0 0 0 0 0 1 0 0 0 0
..................................................TTCAGATCCTCAAATATCATATG......................................................................................... 23 1 4 0.25 1 0 0 0 0 0 1 0 0 0 0
..................................................TTCGGATCCTCAAATACCATATG......................................................................................... 23 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0
..................................................TTCAGATCCTCAAATACCATATGTCAA..................................................................................... 27 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0
..................................................TTCAGATCCTCAAATACCATATGTG....................................................................................... 25 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0
..................................................TTCAGATCCTCAAATACCA............................................................................................. 19 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0
..................................................TTCAGATCCTCAAATACCATGT.......................................................................................... 22 1 4 0.25 1 0 0 1 0 0 0 0 0 0 0
..................................................TTCAGATCCTCAGATACCATATG......................................................................................... 23 1 4 0.25 1 0 0 0 0 0 0 1 0 0 0
..................................................TTCAGATCCTTAAATACCATATC......................................................................................... 23 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0
...................................................TCAGATCCTCAAATACCATATGTCT...................................................................................... 25 1 4 0.25 1 0 0 0 1 0 0 0 0 0 0
................................................................................................TTGGTGGATTTGAAAA.................................................. 16 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................GATTGATTTGGTGGATTTGAAAAA................................................. 24 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................GATTGATTTGGTGGATTTGAAAA.................................................. 23 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................TATAGATTTGGTGGATTTGAA.................................................... 21 1 5 0.20 1 0 0 1 0 0 0 0 0 0 0
..............................................................................................ATTTGGTGGATTTGAAA................................................... 17 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................TATAGATTTGGTGGATTTGAAA................................................... 22 1 5 0.20 1 0 0 1 0 0 0 0 0 0 0
.............................................................................................GATTTGGTGGATTTGAAA................................................... 18 0 5 0.20 1 0 0 1 0 0 0 0 0 0 0
.........................................................................................TATAGATTTGGTGGATTTG...................................................... 19 1 5 0.20 1 0 0 1 0 0 0 0 0 0 0
.............................................................................................GATTTGGTGGATTTGAAAA.................................................. 19 0 5 0.20 1 0 0 1 0 0 0 0 0 0 0
.........................................................................................GATTGATTTGGTGGATTTGAA.................................................... 21 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................TTTGGTGGATTTGAAA................................................... 16 0 6 0.17 1 1 0 0 0 0 0 0 0 0 0
..................................................TTCAGATCCTCAAATACTATATGT........................................................................................ 24 1 6 0.17 1 0 0 1 0 0 0 0 0 0 0
................................................................................................TTGGTGGATTTGAAA................................................... 15 0 8 0.13 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................AATTGGTGGATTTGGTAACT................................................ 20 3 9 0.11 1 0 1 0 0 0 0 0 0 0 0
...................................................................................CTTTCAGAGAGATATGGT............................................................. 18 2 11 0.09 1 0 0 1 0 0 0 0 0 0 0
..............................................................................TTTGTCTTTCAGATAGCTTA................................................................ 20 3 19 0.05 1 0 0 0 0 0 1 0 0 0 0
.....................................................................................TACAGCTCGATTTGGTGGA.......................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

ACCCGCTTATTTGCTCACGCTTATCGGCGGCCCAGTTTACCAGGTCTCAAAAGTCTAGGAGTTTATGGTATACATAATAAACTGAAAGTCTATCTAAACCACCTAAACTTTTGAAAAGTGAATTCTTGTGAACTATGTTCAGAGATAGAGTTGCTTATAAAA

***********************************....(((..(((((((((((((((((((((..........((((((((...)))))))))))))).)))))))))))))))..)))......*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902011

testis

 M040

female body

 M059

embryo

 SRR902012

CNS imaginal disc

 GSM343916

embryo
.....................................TACCAGGTCTCAAAAGTCTAGGA...................................................................................................... 23 0 6 0.50 3 3 0 0 0 0
................................................................................................................................TGACCTATGTTCAGAGATAGAAT........... 23 2 4 0.25 1 0 1 0 0 0
..................................................AAGTCTAGGAGTTTATGGTATACAT....................................................................................... 25 0 4 0.25 1 0 0 1 0 0
........................CGGCGGCCCAGTTTACCAGGTCTCAAA............................................................................................................... 27 0 4 0.25 1 0 0 0 1 0
ACCCGCTTATTATCTCATG............................................................................................................................................... 19 3 18 0.06 1 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
dp5 XL_group1e:8373804-8373965 - dps_37 candidate-rescued TGGGCGAATAAACGAGTGCGAATAGCCGCCGGGTCAAATGGTCCAGAGTTTTCAGATCCTCAAATACCATATGTATTATTTGACTTTCAGATAGATTTGGTGGATTTGAAAACTTTTCACTTAAGAACACTTGATACAAGTCTCTATCTCAACGAATATTTT
droPer2 scaffold_13:188241-188357 + TGGGCGAATAAACGATTACGAATAGC---CGGGTCAAATGGTCTAGAGCTTTCAGATCCTCAAATACCATATGTATTATTTGAATTTCATATGGATTTGATTGATTTGAAAACTTTTCAC------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
TGGGCGAATAAACGAGTGCGAATAGCCGCCGGGTCAAATGGTCCAGAGTTTTCAGATCCTCAAATACCATATGTATTATTTGACTTTCAGATAGATTTGGTGGATTTGAAAACTTTTCACTTAAGAACACTTGATACAAGTCTCTATCTCAACGAATATTTTSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
..................................................TTCAGATCCTCAAATACCATATG.........................................................................................234154.75619153212151162505021
..................................................TTCAGATCCTCAAATACCATAT..........................................................................................22459.25237038771332411431
..................................................TTCAGATCCTCAAATACCATA...........................................................................................2148.253317130140160
..................................................TTCAGATCCTCAAATACCATATC.........................................................................................2345.502200020050150
..................................................TTCAGATCCTCAAATACCATATGA........................................................................................2445.002000000010190
..................................................TTCAGATCCTCAAATACCATATGT........................................................................................2444.751903000110050
..................................................TTCAGATCCTCAAATACCATATGTAT......................................................................................2643.251301000000120
..................................................TTCAGATCCTCAAATACCATAA..........................................................................................2242.751100010000100
..................................................TTCAGATCCTCAAATACCAT............................................................................................2041.7570400001020
..................................................TTCAGATCCTCAAATACCATATT.........................................................................................2341.7570000001060
..................................................TTCAGATCCTCAAATACCATATGTC.......................................................................................2541.5060000003030
...................................................TCAGATCCTCAAATACCATATG.........................................................................................2241.5060320000010
...................................................TCAGATCCTCAAATACCATAT..........................................................................................2141.2550500000000
..................................................TTCAGATCCTCAAATACCATATCCC.......................................................................................2541.0040101000020
..................................................TTCAGATCCTCAAATACCATATGTA.......................................................................................2541.0040000000040
..................................................TTCAGATCCTCAAATACCATATGTCC......................................................................................2640.7530000002010
..................................................TTCAGATCCTCAAATACCATATCA........................................................................................2440.7530000000030
..................................................TTCAGATCCTCAAATACCATATCC........................................................................................2440.7530000000030
..................................................TTCAGATCCTCAAATACCATATGC........................................................................................2440.5020010000010
..................................................TTCAGATCCTCAAATAC...............................................................................................1760.3320000000020
..................................................TTCAGATCCTCAAATACCATATGTAAA.....................................................................................2740.2510000000010
...................................................TCAGATCCTCAAATACCATATGT........................................................................................2340.2510100000000
..................................................TTCAGATCCTCAAATACCATATCCT.......................................................................................2540.2510000010000
.................................................TTTCAGATCCTCAAATACCATATG.........................................................................................2440.2511000000000
...................................................TCAGATCCTCAAATACCATATGTA.......................................................................................2440.2510000000010
..................................................TTCAGATCCTCAAATACCATT...........................................................................................2140.2510100000000
..................................................TTCAGATCCTCAAATACCATATA.........................................................................................2340.2510000000010
..................................................TTCAGATCCTCAAATACCATATGCCC......................................................................................2640.2510000000010
..................................................TTCAGATCCTCAAATACCATATGTATT.....................................................................................2740.2510100000000
..................................................TTCAGATCCTCAAATACCAC............................................................................................2040.2510010000000
..................................................TTCAGATCCTCAAATACCATATGTCA......................................................................................2640.2510000000010
..................................................TTCAGATCCTCAAATACCATATGTAC......................................................................................2640.2510001000000
..................................................TTCAGATCCTCAAATACCATAC..........................................................................................2240.2510010000000
..................................................TTCAGATCCTCAAATACCATATGTCAA.....................................................................................2740.2510000000010
..................................................TTCAGATCCTCAAATACCATATGTG.......................................................................................2540.2510000000010
..................................................TTCAGATCCTCAAATACCA.............................................................................................1940.2510000000010
................................................................................................TTGGTGGATTTGAAAA..................................................1650.2010000000010
..............................................................................................ATTTGGTGGATTTGAAA...................................................1750.2010000000010
.............................................................................................GATTTGGTGGATTTGAAA...................................................1850.2010000001000
.............................................................................................GATTTGGTGGATTTGAAAA..................................................1950.2010000001000
...............................................................................................TTTGGTGGATTTGAAA...................................................1660.1710000000010
................................................................................................TTGGTGGATTTGAAA...................................................1580.1310000000010
droPer2
TGGGCGAATAAACGATTACGAATAGC---CGGGTCAAATGGTCTAGAGCTTTCAGATCCTCAAATACCATATGTATTATTTGAATTTCATATGGATTTGATTGATTTGAAAACTTTTCAC------------------------------------------SizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
.........................................................................................TATGGATTTGATTGATTTGA.....................................................201305.00305010074284
.........................................................................................TATGGATTTGATTGATTTGAAA...................................................221233.0023338063213
.........................................................................................TATGGATTTGATTGATTTGAAAA..................................................231212.00212144040190
..................................................TTCAGATCCTCAAATACCATATG.........................................................................................231178.001781011524452
.........................................................................................TATGGATTTGATTGATTTGAA....................................................211159.0015939017139
..................................................TTCAGATCCTCAAATACCATAT..........................................................................................22164.006403211129
.........................................................................................TATGGATTTGATTGATTTG......................................................19144.00440000143
.........................................................................................TATGGATTTGATTGATTTGAAAAA.................................................24139.00390000039
..................................................TTCAGATCCTCAAATACCATATGT........................................................................................24121.00210100020
..................................................TTCAGATCCTCAAATACCATA...........................................................................................21114.00140100013
.........................................................................................TATGGATTTGATTGATTTGAAAC..................................................23112.00121000011
.........................................................................................TATGGATTTGATTGATTTGAAAAAA................................................25111.00110000011
.........................................................................................TATGGATTTGATTGATTTGAAAAT.................................................2415.005000005
.........................................................................................TATGGATTTGATTGATTTGAAAAAAA...............................................2613.003000003
..................................................TTCAGATCCTCAAATACCATATC.........................................................................................2313.003000003
..................................................TTCAGATCCTCAAATACCAT............................................................................................2013.003010002
.........................................................................................TATGGATTTGATTGATTTGAAAAC.................................................2413.003200001
..................................................TTCAGATCCTCAAATACCATAAA.........................................................................................2313.003001002
..........................................................................................ATGGATTTGATTGATTTGA.....................................................1912.002020000
..............................GGGTCAAATGGTCTAGAGCT................................................................................................................2012.002000002
..................................................TTCAGATCCTCAAATACCATATT.........................................................................................2312.002000002
.........................................................................................TATGGATTTGATTGATTTGAG....................................................2112.002000002
.........................................................................................TATGGATTTGATTGATTTGAAT...................................................2211.001000001
..................................................TTCAGATCCTCAAATACCATATGTCC......................................................................................2611.001000001
..................................................TTCAGATCCTCAAATACCATATA.........................................................................................2311.001010000
.........................................................................................TATGGATTTGATTGATTTGAAAT..................................................2311.001000001
..................................................TTCAGATCCTCAAATACCATC...........................................................................................2111.001000001
..................................................TTCAGATCCTCAAATACCATATGTC.......................................................................................2511.001000001
.........................................................................................TATGGATTTGATTGATTTGAAAG..................................................2311.001000001
.........................................................................................TATGGATTTGATTGATTTGAAAAG.................................................2411.001000001
...................................................TCAGATCCTCAAATACCATAT..........................................................................................2111.001010000
.........................................................................................TATGGATTTGATTGATTTGAAG...................................................2211.001000001
.........................................................................................TATGGATTTGATTGATTG.......................................................1811.001000001
.........................................................................................TATGGATTTGATTGATTTGAAACTC................................................2511.001000001

Generated: 10/20/2015 at 07:11 PM