ID:

dps_3399

 Coordinate:

XR_group8:8970994-8971095 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [dpse_GLEANR_7641:2]; exon [dpse_GLEANR_7641:3]; CDS [Dpse\GA19576-cds]; CDS [Dpse\GA19576-cds]; intron [Dpse\GA19576-in]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------##################################################
CCGATACCATGTTGCACAAGGTTGTTGGTTCGGAAGCCGACACTGGCCGTGTAAGCAAATGGGCACACATGCCCCCTAGCCCCTGCCCCTGCCCCTGCCCCCTGTTAATCAATCGATTGATTGACTGATTGTAATCCCCTTTTCCGTTGCAGGTCTTCCACAAGCAATTCAATTCGCCCATCGGCCTCTACTCAAACAGCAA
**************************************************....(((...(((((.....((......))...))))).)))...........(((((((((....)))))))))...(((((((..........)))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 M062
head
 M059
embryo
 SRR902011
testis
 V112
male body		 GSM444067
head
 GSM343916
embryo
.................AAGGTTGTTGGTTCGGAAGCC.................................................................................................................................................................... 21 0 1 3.00 3 1 1 0 0 1 0 0
..................AGGTTGTTGGTTCGGAAGCC.................................................................................................................................................................... 20 0 1 3.00 3 3 0 0 0 0 0 0
...............ACAAGGTTGTTGGTTCGGAAGCC.................................................................................................................................................................... 23 0 1 2.00 2 0 0 1 1 0 0 0
............TGCACAAGGTTGTTGGTTCGGAA....................................................................................................................................................................... 23 0 1 2.00 2 2 0 0 0 0 0 0
.....................................................................................................................................................................AATTCAATTCGCCCATCGGCCTCT............. 24 0 1 2.00 2 2 0 0 0 0 0 0
.............GCACAAGGTTGTTGGTTCGGA........................................................................................................................................................................ 21 0 1 2.00 2 2 0 0 0 0 0 0
..........................GTTTCGGAAGCCGACACTGGCC.......................................................................................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0
..............................................................................................................................................................................CGCCCATCGGCCTCTACTCA........ 20 0 1 1.00 1 1 0 0 0 0 0 0
............TGCACAAGGTTGTTGGTTCGGAAGCC.................................................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0
................CAAGGTTGTTGGTTCGGAAGC..................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0
...................................................................................................................................................................................ATCGGCCTCTACTCAAACAGCA. 22 0 1 1.00 1 1 0 0 0 0 0 0
..........GGTGCACAAGGTTGTTGGTTCGGAAGCC.................................................................................................................................................................... 28 1 1 1.00 1 0 1 0 0 0 0 0
...........................................................................................................................................................................ATTCGCCCATCGGCCTCTACTCAAA...... 25 0 1 1.00 1 1 0 0 0 0 0 0
...........................................................................................................................................................................ATTCGCCCATCGGCCTCTACTC......... 22 0 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................................................................................TTCGCCCATCGGCCTCTACTCAAACAGC.. 28 0 1 1.00 1 1 0 0 0 0 0 0
..................CGGTTGTTGGTTCGGAAGC..................................................................................................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................................................................................TTCGCCCATCGGCCTCTAC........... 19 0 1 1.00 1 0 1 0 0 0 0 0
.....ACCATGTTGCACAAGGTTGTTG............................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0
..............CAGAAGGTTGTAGGTTCG.......................................................................................................................................................................... 18 2 5 1.00 5 5 0 0 0 0 0 0
..................ATGTTGTTGGTTCGGAAGCC.................................................................................................................................................................... 20 1 1 1.00 1 0 1 0 0 0 0 0
......................................................................................................................................................................ATTCAATTCGCCCATCGGCCT............... 21 0 1 1.00 1 1 0 0 0 0 0 0
...................GGTTGTTGGTTCGGAAGCCGA.................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................................................................................TTCGCCCATCGGCCTCTACTCAA....... 23 0 1 1.00 1 0 0 0 0 0 1 0
..............................................................................................................................................................................CGCCCATCGGCCTCTACTCAAACAGCAA 28 0 1 1.00 1 1 0 0 0 0 0 0
....................GTTGTTGGTTCGGAAGCCG................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0
..................AGGTTGTTGGTTCGGAAGCCGAC................................................................................................................................................................. 23 0 1 1.00 1 0 1 0 0 0 0 0
....................GTTGTTGGTTCGGAAGCC.................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 1 0 0 0
......................TGTTGGTTCGGAAGCCGACACTGGCCGT........................................................................................................................................................ 28 0 1 1.00 1 1 0 0 0 0 0 0
..............CAGAAGGTTGTAGGTTCGA......................................................................................................................................................................... 19 3 20 0.55 11 10 0 0 0 1 0 0
..................AGGTTGTTGGCTCAGAAGC..................................................................................................................................................................... 19 2 2 0.50 1 0 1 0 0 0 0 0
....................GTCGTTGGTGCGGAAGCCG................................................................................................................................................................... 19 2 5 0.20 1 1 0 0 0 0 0 0
........................................................................................................................TTGACTGATTGTGTTCGCCTT............................................................. 21 3 6 0.17 1 1 0 0 0 0 0 0
.............................................................................................................................................TAACGTTGCAGGTCGTCCA.......................................... 19 3 11 0.09 1 1 0 0 0 0 0 0
......................................................................................................................................................................ATGTAATTCGGCCATCGGC................. 19 3 12 0.08 1 0 0 0 0 0 0 1
...................AGTCGTTGGTGCGGAAGCCG................................................................................................................................................................... 20 3 16 0.06 1 1 0 0 0 0 0 0
...............................................................................................................................................GCGTTGCAGGTGTTCCACG........................................ 19 3 20 0.05 1 1 0 0 0 0 0 0

Anti-sense strand reads

GGCTATGGTACAACGTGTTCCAACAACCAAGCCTTCGGCTGTGACCGGCACATTCGTTTACCCGTGTGTACGGGGGATCGGGGACGGGGACGGGGACGGGGGACAATTAGTTAGCTAACTAACTGACTAACATTAGGGGAAAAGGCAACGTCCAGAAGGTGTTCGTTAAGTTAAGCGGGTAGCCGGAGATGAGTTTGTCGTT
**************************************************....(((...(((((.....((......))...))))).)))...........(((((((((....)))))))))...(((((((..........)))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 GSM343916
embryo
 V112
male body		 M022
male body		 SRR902012
CNS imaginal disc
....................................................................................................................................TAAGGGGAACAGGCATCGTC.................................................. 20 3 5 2.80 14 13 0 0 1 0
......................................................................................................................................AGGGGAACAGGCATCGTCAAG............................................... 21 3 1 1.00 1 1 0 0 0 0
..................................................................................................................................................................TCGTTGAGATAAGCGGGT...................... 18 2 2 0.50 1 0 1 0 0 0
...............................................................................................................................................................................CGGGTTGCCGGAGATGAGTAA...... 21 3 2 0.50 1 0 1 0 0 0
.......................................................................................................................................GGGGAACAGGCATCGTCAAG............................................... 20 3 4 0.25 1 0 0 1 0 0
....................................................................................................................................TAAGGGGAACAGGCATCGT................................................... 19 3 20 0.20 4 0 0 0 4 0
....................................................................................................................................TAAGGGGAACAGGCAAGGTC.................................................. 20 3 15 0.13 2 2 0 0 0 0
....................................................................................................................................TAAGGGGAAAAGGCATGGTC.................................................. 20 3 18 0.11 2 0 0 2 0 0
...............................................................................................................................................................................CGGATAGCCGGAGCTGAAT........ 19 3 10 0.10 1 1 0 0 0 0
......................................................................................................................................AGGGGAAAAGGCATGGTCAAG............................................... 21 3 10 0.10 1 0 0 0 0 1
................................CTTCGGCGGCGAACGGCACA...................................................................................................................................................... 20 3 17 0.06 1 0 1 0 0 0
................................................................................................................................................................................GGATAGCCGGAGCTGAAT........ 18 3 20 0.05 1 1 0 0 0 0
.................................................................................................TGGGGACATTTAGTTAACT...................................................................................... 19 3 20 0.05 1 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 XR_group8:8970944-8971145 - dps_3399 CCGATACCATGTTGCACAAGGTTGTTGGTTCGGAAGCCGACACTGGCCGTGTAAGCAAAT----GG--GC-----------------------A-CAC-------------------------------------------------------------------------------------------------------------ATGCCCCCTAGCCCCTGCCCCTGCCCCTGCCCCCTGTTAATCAATCGATTGATTGACTG--------------------------A-------------------------------------TTGT--AA-----T------CCCCTTTT-C--CGTTGCAGGTCTTCCACAAGCAATTCAATTCGCCCATCGGCCTCTACTCAAACAGCAA
droPer2 scaffold_50:234503-234700 + CCGATACCATGTTGCACAAGGTTGTTGGTTCGGAAGCCGACACTGGCCGTGTAAGCAAAT----GG--GC-----------------------A-CAC-------------------------------------------------------------------------------------------------------------ATGCCCCCTAGCCCCTGCCCC----CTTGCCCCCTGTTAATCAATCGATTGATTGACTG--------------------------A-------------------------------------TTGT--AA-----T------CCCCTTTT-C--CGTTGCAGGTCTTCCACAAGCAATTCAATTCGCCCATCGGCCTCTACTCAAACAGCAA
droWil2 scf2_1100000004511:8273198-8273356 - CCGATACAATGTTGCACAAGGTTGTTGGTCAGGATGCCGATACTGGCAGAGTAAGTGAAC----CC--AA-----------------------AGTTCAAAT----CCAAATCGAAATCTCAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------C------------------------------------------------TCT----------C-ACTCCAACTCCCAGGTCTTCCACAAGCAATTCAACTCGCCCATCGGCCTCTACTCGAACAGCAA
droVir3 scaffold_13049:6280529-6280697 + CCGATACCATGTTGCACAAGGTTGTTGGCCAGGATGCCGATACTGGCAGAGTGAGTAACC----AG--GC-----------------------A-AAC--------------AAAAATCTTTTACAG-------------------------------------------------------------------------------------------------------------------------CCAA-----GCCTGACTG--------------------------C-------------------------------------TTTC--AA-----T------ACGATTCT-C----GTTTAGGTTTTCCACAAGCAATTCAACTCGCCAATTGGTCTGTACTCCAACAACAA
droMoj3 scaffold_6680:4593690-4593852 + CCGATACCATGTTGCACAAGGTTGTTGGCCAGGATGCCGACTCTGGCAGAGTAAGCTATA----AA--AA-----------------------A-CTCAAAT----TTTA---------------AC-------------------------------------------------------------------------------------------------------------------------CTAA-----ATCCGTCTATTTTATGGACC---------------A-------------------------------------TTTT------------------------------ATTCAGGTTTTCCACAAGCAATTCAACTCGCCAATTGGTCTCTACTCCAGCAATAA
droGri2 scaffold_15072:91452-91612 + CCGATACCATGTTGCACAAGGTTGTTGGCCAGGATGCCGATACTGGCAGAGTGAGTGCTACAAGCAG------------------------------C-------------------------------------------------------------------------------------------------------------------------------------------------------AACTGTT-----------------------------------------------------------------T--------TT--CATATTTCCTATAAGTACAAA-TC--TGTCTCTTAGGTTTTCCACAAGCAATTCAACTCGCCGATTGGTCTGTACTCAAACCACAA
droAna3 scaffold_13337:8007861-8008018 - CCGACACCATGCTGCACAAGGTTGTTGGCTCCGAGGCCGACACTGGCCGCGTAAGTTTAA----AG--GGATTCTTTCAAATAAAAACTTT------CCTTT------A------------TAAAAG----------------------------------------------------------------------------------------------------------------------------------------------------C------------------------------------------------------------------------------------CAATTTCCAGGTCTTCCACAAGCAATTCAACTCGCCCATCGGTCTGTACTCCAACAGCAA
droBip1 scf7180000396541:168531-168693 - CCGACACCATGCTGCACAAGGTTGTTGGCTCTGAGGCCGACACTGGCCGCGTAAGTCGAG----AGGGGGATTTTCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAATAAAAAGTTTTCTTTA-TG--------------------------A-------------------------------------AAGC--AA-----A------C----------ATTTTGCAGGTCTTCCACAAGCAATTCAACTCGCCCATCGGTCTGTACTCCAACAGCAA
droKik1 scf7180000302474:350964-351174 - CCGACACCATGCTGCACAAGGTTGTCGGTTCGGAGGCCGACACTGGCCGCGTAAGTACAATAACCGGGGGATCTG----------------AGA-----AATTATATCAATTTAAGATCTCATTTTC-------------------------------------------------------------------------------------------------------------------------CCAA-----GTACTTCAATGTTTTCGACC---------------AT--------------------------TTTA------TA--TATATGCTAT----------A-CCTC--AACTACAGGTCTTCCACAAGCAGTTCAACTCGCCCATCGGTCTGTACTCCAACAGCAA
droFic1 scf7180000453833:810843-810898 + TCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGTCTTCCACAAGCAATTCAACTCGCCCATCGGCCTGTACTCCAACCACAA
droEle1 scf7180000491268:53782-53860 - TTAACC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTGCT-------------------------------------------------------------------------------------TGT----------C-TTCC--GATCGCAGGTCTTCCACAAGCAATTCAACTCGCCCATCGGCCTATACTCCAACAACAA
droRho1 scf7180000779204:274754-274824 + A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-----T------TTTCTTCTCC--GATCGCAGGTCTTCCACAAGCAATTCAACTCGCCCATCGGCCTGTACTCCAACAACAA
droBia1 scf7180000302428:10564997-10565059 + CCGATACCATGCTGCACAAGGTTGTCGGTTCTGAGGCCGACACTGGCCGCGTAAGTATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGG
droTak1 scf7180000414445:79011-79086 - A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT--TAAATTCCCT----------A-CCAT--TTCCACAGGTCTTCCACAAGCAATTCAACTCGCCCATCGGCCTGTACTCCAACAACAA
droEug1 scf7180000409524:33487-33554 - TC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT----------C-CTTC--GATCCTAGGTCTTCCACAAGCAATTCAACTCGCCCATCGGCCTGTACTCCAACAGCAA
dm3 chr3L:8628087-8628151 + A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------C-CCCC--GATTTTAGGTCTTCCACAAGCAATTCAACTCGCCCATTGGCCTGTACTCCAACAACAA
droSim2 3l:8417260-8417552 + dsi_10171 CCGACACCATGCTGCACAAGGTGGTCGGTTCGGAAGCCGACACTGGCCGCGTAAGTACAG----GG--GA-----------------------AGTCCCCTT------A-------ATTACTTGAAGTCACACCTACGTAATGGAAAATTACAAAAACTAGAGTTTTCTACATTTAAAATTGACAA----------------------AGACCTGTGGTCTTTGTTGTAATCCGTTCACG---------------------------------AA--ATTTA-------TTGT-ATTTAATTTAAGATTAAGTGGTTTTACTTATATTTATG--TA-----TAT----------C-CCCC--GATTTCAGGTCTTCCACAAGCAATTCAACTCGCCTATCGGCCTGTACTCCAACAACAA
droSec2 scaffold_0:906646-906710 + A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------C-CCCC--GATTTCAGGTCTTCCACAAGCAATTCAACTCGCCCATCGGCCTGTACTCCAACAACAA
droYak3 3L:3284265-3284539 - CCGACACCATGCTGCACAAGGTTGTCGGTTCGGAAGCCGACACTGGCCGCGTAAGTGAAC----------------------------------------------------------TACTTAAAGCCACACTCACATAATGTTAAATTACAAAAAATACAGTTTTCTACATGTAAAATTGACATTTTCAATATCATTTTGAATTCGTGACCTGTGGTGTTTGTTCTAACGCTTTTTCA---------------------------------AA--ATTCAAATGAAAATGT-ATACAAT---------------------------------AA-----TAT----------T-TCCC--GATTTCAGGTCTTCCACAAGCAATTCAACTCGCCCATCGGCCTGTACTCCAACAACAA
droEre2 scaffold_4784:5418300-5418359 - TCGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCAGGTCTTCCACAAGCAATTCAACTCGCCCATCGGCCTATACTCCAACAACAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
CCGATACCATGTTGCACAAGGTTGTTGGTTCGGAAGCCGACACTGGCCGTGTAAGCAAAT----GG--GC-----------------------A-CAC-------------------------------------------------------------------------------------------------------------ATGCCCCCTAGCCCCTGCCCCTGCCCCTGCCCCCTGTTAATCAATCGATTGATTGACTG--------------------------A-------------------------------------TTGT--AA-----T------CCCCTTTT-C--CGTTGCAGGTCTTCCACAAGCAATTCAATTCGCCCATCGGCCTCTACTCAAACAGCAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................AAGGTTGTTGGTTCGGAAGCC..............................................................................................................................................................................................................................................................................................................................................................................................2113.0030101001000
..................AGGTTGTTGGTTCGGAAGCC..............................................................................................................................................................................................................................................................................................................................................................................................2013.0030300000000
...............ACAAGGTTGTTGGTTCGGAAGCC..............................................................................................................................................................................................................................................................................................................................................................................................2312.0020010000010
............TGCACAAGGTTGTTGGTTCGGAA.................................................................................................................................................................................................................................................................................................................................................................................................2312.0020200000000
...............................................................................................................................................................................................................................................................................................................................................................................................AATTCAATTCGCCCATCGGCCTCT.............2412.0020200000000
.............GCACAAGGTTGTTGGTTCGGA..................................................................................................................................................................................................................................................................................................................................................................................................2112.0020200000000
........................................................................................................................................................................................................................................................................................................................................................................................................CGCCCATCGGCCTCTACTCA........2011.0010100000000
............TGCACAAGGTTGTTGGTTCGGAAGCC..............................................................................................................................................................................................................................................................................................................................................................................................2611.0010010000000
................CAAGGTTGTTGGTTCGGAAGC...............................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000010
.............................................................................................................................................................................................................................................................................................................................................................................................................ATCGGCCTCTACTCAAACAGCA.2211.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................ATTCGCCCATCGGCCTCTACTCAAA......2511.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................ATTCGCCCATCGGCCTCTACTC.........2211.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................TTCGCCCATCGGCCTCTACTCAAACAGC..2811.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................TTCGCCCATCGGCCTCTAC...........1911.0010001000000
.....ACCATGTTGCACAAGGTTGTTG.........................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................ATTCAATTCGCCCATCGGCCT...............2111.0010100000000
...................GGTTGTTGGTTCGGAAGCCGA............................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................TTCGCCCATCGGCCTCTACTCAA.......2311.0010000010000
........................................................................................................................................................................................................................................................................................................................................................................................................CGCCCATCGGCCTCTACTCAAACAGCAA2811.0010100000000
....................GTTGTTGGTTCGGAAGCCG.............................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
..................AGGTTGTTGGTTCGGAAGCCGAC...........................................................................................................................................................................................................................................................................................................................................................................................2311.0010001000000
....................GTTGTTGGTTCGGAAGCC..............................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000010
......................TGTTGGTTCGGAAGCCGACACTGGCCGT..................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000000
droPer2
CCGATACCATGTTGCACAAGGTTGTTGGTTCGGAAGCCGACACTGGCCGTGTAAGCAAAT----GG--GC-----------------------A-CAC-------------------------------------------------------------------------------------------------------------ATGCCCCCTAGCCCCTGCCCC----CTTGCCCCCTGTTAATCAATCGATTGATTGACTG--------------------------A-------------------------------------TTGT--AA-----T------CCCCTTTT-C--CGTTGCAGGTCTTCCACAAGCAATTCAATTCGCCCATCGGCCTCTACTCAAACAGCAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................GGTTGTTGGTTCGGAAGCC..............................................................................................................................................................................................................................................................................................................................................................................................1913.003020001
.......................................................................................................................................................................................................................................................................................................................................................................................................TCGCCCATCGGCCTCTACTC.........2012.002020000
.........TGTTGCACAAGGTTGTTGGTTCGGAAGC...............................................................................................................................................................................................................................................................................................................................................................................................2812.002200000
..................AGGTTGTTGGTTCGGAAGCC..............................................................................................................................................................................................................................................................................................................................................................................................2012.002010001
.........................................................................................................................................................................................................................................................................................................................................................................................................GCCCATCGGCCTCTACTCAA.......2011.001010000
........................................................................................................................................................................................................................................................................................................................................................................................................CGCCCATCGGCCTCTACTCAAACAGC..2611.001100000
..........GTTGCACAAGGTTGTTGGTT......................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
droWil2
CCGATACAATGTTGCACAAGGTTGTTGGTCAGGATGCCGATACTGGCAGAGTAAGTGAAC----CC--AA-----------------------AGTTCAAAT----CCAAATCGAAATCTCAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------C------------------------------------------------TCT----------C-ACTCCAACTCCCAGGTCTTCCACAAGCAATTCAACTCGCCCATCGGCCTCTACTCGAACAGCAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....................GTTGTTGGTCAGGATGCC..............................................................................................................................................................................................................................................................................................................................................................................................1814.00400022
.............................................................................................................................................................................................................................................................................................................................................................................................................ATCGGCCTCTACTCGAACAGC..2112.00220000
................................................................................................................................................................................................................................................................................................................................................................................................ATTCAACTCGCCCATCGGCC................2011.00110000
.................................................................................................................................................................................................................................................................................................................................................................................................TTCAACTCGCCCATCGGCCTCTACTCG........2711.00110000
.................AAGGTTGTTGGTCAGGATGC...............................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
.....................................................................................................................................................................................................................................................................................................................................................................................................ACTCGCCCATCGGCCTCT.............1811.00110000
.............GCACAAGGTTGTTGGTCAGGATGCC..............................................................................................................................................................................................................................................................................................................................................................................................2511.00100010
............TGCACAAGGTTGTTGGTCAGGATGCCG.............................................................................................................................................................................................................................................................................................................................................................................................2711.00100010
.............GCACAAGGTTGTTGGTCAGGATGC...............................................................................................................................................................................................................................................................................................................................................................................................2411.00100100
......................TGTTGGTCAGGATGCCGA............................................................................................................................................................................................................................................................................................................................................................................................1811.00110000
............................................................................................................................................................................................................................................................................................................................................................................................AGCAATTCAACTCGCCCATCGGCCTC..............2611.00100010
................................................................................................................................................................................................................................................................................................................................................................................................ATTCAACTCGCCCATCGGCCTCTACTC.........2711.00110000
.....ACAATGTTGCACAAGGTTGTTGGT.......................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
...............ACAAGGTTGTTGGTCAGGATGCC..............................................................................................................................................................................................................................................................................................................................................................................................2311.00101000
...................GGTTGTTGGTCAGGATGCC..............................................................................................................................................................................................................................................................................................................................................................................................1911.00100001
............TGCACAAGGTTGTTGGTCAGGATGC...............................................................................................................................................................................................................................................................................................................................................................................................2511.00100100
.........................................................................................................................................................................................................................................................................................................................................................................................ACAAGCAATTCAACTCGCCCATCGGCC................2711.00110000
....................................................................................................................................................................................................................................................................................................................................................................................CTTCCACAAGCAATTCAACT............................2011.00100010
................CAAGGTTGTTGGTCAGGATGCCGATACG........................................................................................................................................................................................................................................................................................................................................................................................2811.00110000
................CAAGGTTGTTGGTCAGGATGCCGATACT........................................................................................................................................................................................................................................................................................................................................................................................2811.00110000
......CAATGTTGCACAAGGTTGTTGGTCA.....................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100
..................AGGTTGTTGGTCAGGATGC...............................................................................................................................................................................................................................................................................................................................................................................................1911.00100001
............TGCACAAGGTTGTTGGTC......................................................................................................................................................................................................................................................................................................................................................................................................1811.00100001
..........GTTGCACAAGGTTGTTGGT.......................................................................................................................................................................................................................................................................................................................................................................................................1911.00100001
droVir3
CCGATACCATGTTGCACAAGGTTGTTGGCCAGGATGCCGATACTGGCAGAGTGAGTAACC----AG--GC-----------------------A-AAC--------------AAAAATCTTTTACAG-------------------------------------------------------------------------------------------------------------------------CCAA-----GCCTGACTG--------------------------C-------------------------------------TTTC--AA-----T------ACGATTCT-C----GTTTAGGTTTTCCACAAGCAATTCAACTCGCCAATTGGTCTGTACTCCAACAACAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................CGCCAATTGGTCTGTACTCCAAC.....2312.002200000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................AACTCGCCAATTGGTCTGT.............1912.002000000000000000100010000000000000000000000000000000000000000000
................CAAGGTTGTTGGCCAGGATGCCGATAC.........................................................................................................................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................TTGGTCTGTACTCCAACA....1811.001010000000000000000000000000000000000000000000000000000000000000
..GATACCATGTTGCACAAGGTTGTTGGCC......................................................................................................................................................................................................................................................................................................................................................................................................2811.001010000000000000000000000000000000000000000000000000000000000000
............TGCACAAGGTTGTTGGCCAGGAT.................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000100000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................AACTCGCCAATTGGTCTGTA............2011.001000000000000000000010000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................ATTCAACTCGCCAATTGGTCTG..............2211.001010000000000000000000000000000000000000000000000000000000000000
..GATACCATGTTGCACAAGGT..............................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000100000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................CGCCAATTGGTCTGTACTCC........2011.001000000000000000001000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................CAACTCGCCAATTGGTCTGTACTCC........2511.001001000000000000000000000000000000000000000000000000000000000000
..................AGGTTGTTGGCCAGGATGCCG.............................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................CGCCAATTGGTCTGTACTCCAACAACAA2811.001000000000000000000000000000001000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................ATTCAACTCGCCAATTGGTCTGTACTCC........2811.001100000000000000000000000000000000000000000000000000000000000000
.........TGTTGCACAAGGTTGTTGGCCAGGA..................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000000000000000000000000000000000000000000000000000000000000
................CAAGGTTGTTGGCCAGGATGCCGATACT........................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000010000000000000000000000000000000000000000
.........................TGGCCAGGATGCCGATACTGGCAGA..................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000010000000000000000000000000000000000000000
............TGCACAAGGTTGTTGGCC......................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................TCAACTCGCCAATTGGTCTGTACT..........2411.001000000000000000001000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................TCAACTCGCCAATTGGTCTGT.............2111.001010000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................AACTCGCCAATTGGTCTGTACTCCAACA....2811.001010000000000000000000000000000000000000000000000000000000000000
..................AGGTTGTTGGCCAGGATGCCGA............................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000100
..........................GGCCAGGATGCCGATACTGG......................................................................................................................................................................................................................................................................................................................................................................................2011.001000100000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................TCAACTCGCCAATTGGTCTGTACTCCA.......2711.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................AGCAATTCAACTCGCCAAT.....................1911.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................AATTGGTCTGTACTCCAAC.....1911.001000100000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................CGCCAATTGGTCTGTACTCCAACAA...2511.001000000000000000001000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................CTCGCCAATTGGTCTGTACTCC........2211.001000000000000000001000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................CTCGCCAATTGGTCTGTACTCCA.......2311.001000000000000000001000000000000000000000000000000000000000000000
.......CATGTTGCACAAGGTTGTTGGCC......................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000100
.........................................................................................................................................................................................................................................................................................................................................................................................................GCCAATTGGTCTGTACTCC........1911.001100000000000000000000000000000000000000000000000000000000000000
droMoj3
CCGATACCATGTTGCACAAGGTTGTTGGCCAGGATGCCGACTCTGGCAGAGTAAGCTATA----AA--AA-----------------------A-CTCAAAT----TTTA---------------AC-------------------------------------------------------------------------------------------------------------------------CTAA-----ATCCGTCTATTTTATGGACC---------------A-------------------------------------TTTT------------------------------ATTCAGGTTTTCCACAAGCAATTCAACTCGCCAATTGGTCTCTACTCCAGCAATAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...........................................................................................................................................................................................................................................................................................................................................................................................AAGCAATTCAACTCGCCAATTGGTCT...............2611.001000010
...............ACAAGGTTGTTGGCCAGGATGCC..............................................................................................................................................................................................................................................................................................................................................................................................2311.001000010
........................................................................................................................................................................................................................................................................................................................................................................................................CGCCAATTGGTCTCTACTCCAGCA....2411.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................CAACTCGCCAATTGGTCTCTACTCCAGCA....2911.001100000
.......................GTTGGCCAGGATGCCGACTCTGGCAGA..................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
................CAAGGTTGTTGGCCAGGATGCCGACTCT........................................................................................................................................................................................................................................................................................................................................................................................2811.001000010
..............................................................................................................................................................................................................................................................................................................................................................................................CAATTCAACTCGCCAATTGGTCT...............2311.001000010
.........................TGGCCAGGATGCCGACTCTGGCA....................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................ATTGGTCTCTACTCCAGCA....1911.001100000
..........................GGCCAGGATGCCGACTCTGGCAGAGT................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
............TGCACAAGGTTGTTGGCCA.....................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
.............GCACAAGGTTGTTGGCCAGGATGCC..............................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
......................TGTTGGCCAGGATGCCGACTC.........................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
................................................................................................................................................................................................................................................................................................................................................................................................ATTCAACTCGCCAATTGGT.................1911.001100000
..........GTTGCACAAGGTTGTTGGCCAGG...................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
....................................................................................................................................................................................................................................................................................................................................................................................TTTCCACAAGCAATTCAACTCGC.........................2311.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................ACTCGCCAATTGGTCTCTACTCCAGCA....2711.001100000
....................................................................................................................................................................................................................................................................................................................................................................................TTTCCACAAGCAATTCAACTCGCCAATTG...................2911.001100000
droGri2
CCGATACCATGTTGCACAAGGTTGTTGGCCAGGATGCCGATACTGGCAGAGTGAGTGCTACAAGCAG------------------------------C-------------------------------------------------------------------------------------------------------------------------------------------------------AACTGTT-----------------------------------------------------------------T--------TT--CATATTTCCTATAAGTACAAA-TC--TGTCTCTTAGGTTTTCCACAAGCAATTCAACTCGCCGATTGGTCTGTACTCAAACCACAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
................CAAGGTTGTTGGCCAGGATGCC..............................................................................................................................................................................................................................................................................................................................................................................................2211.00110
droAna3
CCGACACCATGCTGCACAAGGTTGTTGGCTCCGAGGCCGACACTGGCCGCGTAAGTTTAA----AG--GGATTCTTTCAAATAAAAACTTT------CCTTT------A------------TAAAAG----------------------------------------------------------------------------------------------------------------------------------------------------C------------------------------------------------------------------------------------CAATTTCCAGGTCTTCCACAAGCAATTCAACTCGCCCATCGGTCTGTACTCCAACAGCAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................................................................................................................................................................................................................................................................................................................................................................................................ACTCGCCCATCGGTCTGTACTCCAACA....2713.003101001
........................................................................................................................................................................................................................................................................................................................................................................................................CGCCCATCGGTCTGTACTCCAACAGCA.2712.002200000
............................................................................................................................................................................................................................................................................................................................................................................................................CATCGGTCTGTACTCCAAC.....1911.001000100
......................................................................................................................................................................................................................................................................................................................................................................................................CTCGCCCATCGGTCTGTACTCCA.......2311.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................CAACTCGCCCATCGGTCTGTACT..........2311.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................TCAACTCGCCCATCGGTCTGTACTCC........2611.001010000
..................................................................................................................................................................................................................................................................................................................................................................................................TCAACTCGCCCATCGGTCTGTACTCCA.......2711.001100000
....CACCATGCTGCACAAGGTT.............................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
............TGCACAAGGTTGTTGGCTCCGA..................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
..........GCTGCACAAGGTTGTTGGC.......................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................CGCCCATCGGTCTGTACTCC........2011.001100000
..............CACAAGGTTGTTGGCTCC....................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
.CGACACCATGCTGCACAAGGTTGT...........................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
.................................................................................................................................................................................................................................................................................................................................................................................................TTCAACTCGCCCATCGGTCTGTACTCC........2711.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................ACTCGCCCATCGGTCTGTACTCCA.......2411.001000001
.........................................................................................................................................................................................................................................................................................................................................................................................................GCCCATCGGTCTGTACTCCAACAGC..2511.001010000
.............GCACAAGGTTGTTGGCTCCGAGGCCGAC...........................................................................................................................................................................................................................................................................................................................................................................................2811.001010000
................................................................................................................................................................................................................................................................................................................................................................................................ATTCAACTCGCCCATCGGTC................2011.001010000
............................................................................................................................................................................................................................................................................................................................................................................................AGCAATTCAACTCGCCCAT.....................1911.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................ACTCGCCCATCGGTCTGTACTCC........2311.001000001
.....ACCATGCTGCACAAGGTT.............................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
..GACACCATGCTGCACAAGGT..............................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................TCGCCCATCGGTCTGTACTCCAACAGCA.2811.001100000
............TGCACAAGGTTGTTGGCTCCGAGGC...............................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
..............CACAAGGTTGTTGGCTCCG...................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................AACTCGCCCATCGGTCTGTACTCC........2411.001001000
.....................................................................................................................................................................................................................................................................................................................................................................................................ACTCGCCCATCGGTCTGTACTC.........2211.001010000
...............ACAAGGTTGTTGGCTCCGAGGCC..............................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
..............................................................................................................................................................................................................................................................................................................................................................................................................TCGGTCTGTACTCCAACAGCA.2111.001100000
............TGCACAAGGTTGTTGGCTCC....................................................................................................................................................................................................................................................................................................................................................................................................2011.001000100
...........CTGCACAAGGTTGTTGGCTCCGAGGCC..............................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
.............GCACAAGGTTGTTGGCTCCGAGGC...............................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................TTCAACTCGCCCATCGGTCT...............2011.001100000
.........TGCTGCACAAGGTTGTTGGCTCC....................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................TCGCCCATCGGTCTGTACTCC........2111.001000010
droBip1
CCGACACCATGCTGCACAAGGTTGTTGGCTCTGAGGCCGACACTGGCCGCGTAAGTCGAG----AGGGGGATTTTCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAATAAAAAGTTTTCTTTA-TG--------------------------A-------------------------------------AAGC--AA-----A------C----------ATTTTGCAGGTCTTCCACAAGCAATTCAACTCGCCCATCGGTCTGTACTCCAACAGCAASizeHit CountTotal NormTotal
No Reads
droKik1
CCGACACCATGCTGCACAAGGTTGTCGGTTCGGAGGCCGACACTGGCCGCGTAAGTACAATAACCGGGGGATCTG----------------AGA-----AATTATATCAATTTAAGATCTCATTTTC-------------------------------------------------------------------------------------------------------------------------CCAA-----GTACTTCAATGTTTTCGACC---------------AT--------------------------TTTA------TA--TATATGCTAT----------A-CCTC--AACTACAGGTCTTCCACAAGCAGTTCAACTCGCCCATCGGTCTGTACTCCAACAGCAASizeHit CountTotal NormTotal
No Reads
droFic1
TCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGTCTTCCACAAGCAATTCAACTCGCCCATCGGCCTGTACTCCAACCACAASizeHit CountTotal NormTotal
No Reads
droEle1
TTAACC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTGCT-------------------------------------------------------------------------------------TGT----------C-TTCC--GATCGCAGGTCTTCCACAAGCAATTCAACTCGCCCATCGGCCTATACTCCAACAACAASizeHit CountTotal NormTotal
No Reads
droRho1
A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-----T------TTTCTTCTCC--GATCGCAGGTCTTCCACAAGCAATTCAACTCGCCCATCGGCCTGTACTCCAACAACAASizeHit CountTotal NormTotal
No Reads
droBia1
CCGATACCATGCTGCACAAGGTTGTCGGTTCTGAGGCCGACACTGGCCGCGTAAGTATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGGSizeHit CountTotal NormTotal
No Reads
droTak1
A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT--TAAATTCCCT----------A-CCAT--TTCCACAGGTCTTCCACAAGCAATTCAACTCGCCCATCGGCCTGTACTCCAACAACAASizeHit CountTotal NormTotal
No Reads
droEug1
TC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT----------C-CTTC--GATCCTAGGTCTTCCACAAGCAATTCAACTCGCCCATCGGCCTGTACTCCAACAGCAASizeHit CountTotal NormTotal
No Reads
dm3
A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------C-CCCC--GATTTTAGGTCTTCCACAAGCAATTCAACTCGCCCATTGGCCTGTACTCCAACAACAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................GCCCATTGGCCTGTACTCC........1916.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000500000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................CCACAAGCAATTCAACTCGCCCATT....................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................GGCCTGTACTCCAACAACA.1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................ACTCGCCCATTGGCCTGT.............1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................CGCCCATTGGCCTGTACTCCA.......2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................CGCCCATTGGCCTGTACTCCAACA....2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................TTGGCCTGTACTCCAACA....1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................CTCGCCCATTGGCCTGTACTCC........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................AATTCAACTCGCCCATTGGCCT...............2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................ACTCGCCCATTGGCCTGTACTCCA.......2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................TGGCCTGTACTCCAACAACA.2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................ACTCGCCCATTGGCCTGTACTCC........2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................CAAGCAATTCAACTCGCCCATC....................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................AACTCGCCCATTGGCCTGTACTCC........2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................AGCAATTCAACTCGCCCA......................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCCTGTACTCCAATC....1930.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CCGACACCATGCTGCACAAGGTGGTCGGTTCGGAAGCCGACACTGGCCGCGTAAGTACAG----GG--GA-----------------------AGTCCCCTT------A-------ATTACTTGAAGTCACACCTACGTAATGGAAAATTACAAAAACTAGAGTTTTCTACATTTAAAATTGACAA----------------------AGACCTGTGGTCTTTGTTGTAATCCGTTCACG---------------------------------AA--ATTTA-------TTGT-ATTTAATTTAAGATTAAGTGGTTTTACTTATATTTATG--TA-----TAT----------C-CCCC--GATTTCAGGTCTTCCACAAGCAATTCAACTCGCCTATCGGCCTGTACTCCAACAACAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................................................................................................................................................................................................................................................................................................CTATCGGCCTGTACTCCAAC.....2015.00500500000000000000
..................AGGTGGTCGGTTCGGAAGCC..............................................................................................................................................................................................................................................................................................................................................................................................2015.00523000000000000000
................CAAGGTGGTCGGTTCGGAAGCC..............................................................................................................................................................................................................................................................................................................................................................................................2213.00300200000000100000
.................................................................................................................................................................................................................................................................................................................................................................................................TTCAACTCGCCTATCGGCCTGT.............2212.00200200000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................TTCAACTCGCCTATCGGCC................1912.00200200000000000000
.............GCACAAGGTGGTCGGTTC.....................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................TCGCCTATCGGCCTGTACT..........1911.00100100000000000000
..........GCTGCACAAGGTGGTCGGTTCGGAAGC...............................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................GCCTATCGGCCTGTACTCCAACAA...2411.00100010000000000000
.............................TCGGAAGCCGACACTGGCCGC..................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000000000
................................................................................................................................................................................................................................................................................................................................................................................................ATTCAACTCGCCTATCGGCCTGTACC..........2611.00101000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................ACTCGCCTATCGGCCTGT.............1811.00100100000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................TATCGGCCTGTACTCCAACAAC..2211.00100100000000000000
................................................................................................................................................................................................................................................................................................................................................................................................ATTCAACTCGCCTATCGGCCTGT.............2311.00101000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................TTCAACTCGCCTATCGGCCTGG.............2211.00100100000000000000
............TGCACAAGGTGGTCGGTTC.....................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000000000100000
...........................................................................................................................................................................................................................................................................................................................................................................................................CTATCGGCCTGTACTCCAACAA...2211.00100000000000100000
......................................................................................................................................................................................................................................................................................................................................................................................................CTCGCCTATCGGCCTGTACT..........2011.00101000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................TCAACTCGCCTATCGGCCTGT.............2111.00100100000000000000
................................................................................................................................................................................................................................................................................................................................................................................................ATTCAACTCGCCTATCGGCCTGTACTCC........2811.00101000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................TTCAACTCGCCTATCGGCCT...............2011.00100100000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................GCCTATCGGCCTGTACTCCAAC.....2211.00110000000000000000
...............ACAAGGTGGTCGGTTCGGAAGCC..............................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000000000
.........................CGGTTCGGAAGCCGACACTGGCC....................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000000000
...........................GTTCGGAAGCCGACACTGGC.....................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000000000
.............................TCGGAAGCCGACACTGGCCGG..................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................TCAACTCGCCTATCGGCC................1811.00100100000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................CTATCGGCCTGTACTCCAACA....2111.00100100000000000000
...................GGTGGTCGGTTCGGAAGCC..............................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................CCTATCGGCCTGTACTCC........1811.00100100000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................AATTCAACTCGCCTATCGGCCTGT.............2411.00100100000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................CAACTCGCCTATCGGCCTGTACTCC........2511.00100100000000000000
droSec2
A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------C-CCCC--GATTTCAGGTCTTCCACAAGCAATTCAACTCGCCCATCGGCCTGTACTCCAACAACAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.....................................................................................................................................................................................................................................................................................................................................................................................................ACTCGCCCATCGGCCTGTACTCC........2311.0011000
.......................................................................................................................................................................................................................................................................................................................................................................................................TCGCCCATCGGCCTGTACTCCA.......2211.0011000
................................................................................................................................................................................................................................................................................................................................................................................................ATTCAACTCGCCCATCGGCCTGT.............2311.0011000
droYak3
CCGACACCATGCTGCACAAGGTTGTCGGTTCGGAAGCCGACACTGGCCGCGTAAGTGAAC----------------------------------------------------------TACTTAAAGCCACACTCACATAATGTTAAATTACAAAAAATACAGTTTTCTACATGTAAAATTGACATTTTCAATATCATTTTGAATTCGTGACCTGTGGTGTTTGTTCTAACGCTTTTTCA---------------------------------AA--ATTCAAATGAAAATGT-ATACAAT---------------------------------AA-----TAT----------T-TCCC--GATTTCAGGTCTTCCACAAGCAATTCAACTCGCCCATCGGCCTGTACTCCAACAACAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................AGGTTGTCGGTTCGGAAGCC..............................................................................................................................................................................................................................................................................................................................................................................................2013.00320000010000
...............ACAAGGTTGTCGGTTCGGAAGCC..............................................................................................................................................................................................................................................................................................................................................................................................2313.00300100020000
..................AGGTTGTCGGTTCGGAAGC...............................................................................................................................................................................................................................................................................................................................................................................................1912.00200000020000
.............GCACAAGGTTGTCGGTTCGGAA.................................................................................................................................................................................................................................................................................................................................................................................................2212.00200000020000
................CAAGGTTGTCGGTTCGGA..................................................................................................................................................................................................................................................................................................................................................................................................1812.00200000020000
.....................................................................................................................................................................................................................................................................................................................................................................................................ACTCGCCCATCGGCCTGTACTCCAACA....2711.00101000000000
....................GTTGTCGGTTCGGAAGCC..............................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................TTCAACTCGCCCATCGGCCTGT.............2211.00100100000000
.......................................................................................................................................................................................................................................................................................................TACAAT---------------------------------AA-----TAT----------T-TCCC--GATTTCA...................................................2311.00100010000000
..................................................................................................................................................................................................................................................................................................................................................................................................TCAACTCGCCCATCGGCCTGC.............2111.00100100000000
.........TGCTGCACAAGGTTGTCGGTTCGGAAGCC..............................................................................................................................................................................................................................................................................................................................................................................................2911.00110000000000
.................AAGGTTGTCGGTTCGGAAGC...............................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
................................................................................................................................................................................................................................................................................................................................................................................................ATTCAACTCGCCCATCGGCC................2011.00100000100000
.........TGCTGCACAAGGTTGTCGGTTCGGAA.................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
...............................................................................................................................................................................................................................................................................................................................................................................................AATTCAACTCGCCCATCGGCCT...............2211.00101000000000
...............................................................................................................................................................................................................................................................................................................................................................................................AATTCAACTCGCCCATCGGCC................2111.00100100000000
.........................CGGTTCGGAAGCCGACACTGGCC....................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
.............GCACAAGGTTGTCGGTTCGGAAGCC..............................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
...............ACAAGGTTGTCGGTTCGGAAGCCGA............................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
.............GCACAAGGTTGTCGGTTCGGA..................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
................CAAGGTTGTCGGTTCGGAAGC...............................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
droEre2
TCGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCAGGTCTTCCACAAGCAATTCAACTCGCCCATCGGCCTATACTCCAACAACAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................ATTCAACTCGCCCATCGGCCTATACTCC........2812.0022000000
.....................................................................................................................................................................................................................................................................................................................................................................................................ACTCGCCCATCGGCCTATACTCC........2311.0011000000
.............................................................................................................................................................................................................................................................................................................................................................................................GCAATTCAACTCGCCCATCGGCCT...............2411.0011000000
.........................................................................................................................................................................................................................................................................................................................................................................................................GCCCATCGGCCTATACTCCA.......2011.0011000000
................................................................................................................................................................................................................................................................................................................................................................................................ATTCAACTCGCCCATCGGCCT...............2111.0011000000
....................................................................................................................................................................................................................................................................................................................................................................................................AACTCGCCCATCGGCCTATACTCC........2411.0011000000
.........................................................................................................................................................................................................................................................................................................................................................................................................GCCCATCGGCCTATACTCCAACA....2311.0011000000
..............................................................................................................................................................................................................................................................................................................................................................................................CAATTCAACTCGCCCATCGGCCT...............2311.0010100000
..........................................................................................................................................................................................................................................................................................................................................................................................CAAGCAATTCAACTCGCCCATC....................2211.0010100000

Generated: 05/18/2015 at 06:43 AM