ID:

dps_3398

 Coordinate:

XR_group8:8970763-8970913 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-9.4 -9.2 -9.2

Flybase annnotation

exon [dpse_GLEANR_7641:3]; CDS [Dpse\GA19576-cds]; intron [Dpse\GA19576-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GGCCTCTACTCAAACAGCAACATTGAGGACACCATCAGAACCACAGTTCCGTAAGTTCCGCCCCACCCACAAGAAAATTTACCAAATTGGAAACCACTTTTATGCTTAGAGTTTCGATACCAGAAAAAGCACTAATATCTGATCTGAATTCTTGGATAACGCTTTGTCAAATCGAACGTACATACATATATATTTTCTATGATTTTTCTATAATTTTTCTTTTTGAAAGTTTCTTGAATAAATTTTGCGTA
*************************************************************************************************..((((.((.(((((((.(((..((((.............))))))).))))))).)))))).******************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 M059
embryo
 M062
head
 V112
male body		 SRR902011
testis
 GSM444067
head
 GSM343916
embryo
......................TTGGGGACACCATCAGAACAGCA.............................................................................................................................................................................................................. 23 3 2 64.50 129 118 9 2 0 0 0 0
......................TTGGGGACACCATCAGAACAGC............................................................................................................................................................................................................... 22 3 2 43.50 87 11 62 14 0 0 0 0
......................TTGGGGACACCATCAGAACACCA.............................................................................................................................................................................................................. 23 3 1 24.00 24 16 6 2 0 0 0 0
......................TTGGGGACACCATCAGAACGCCA.............................................................................................................................................................................................................. 23 3 1 19.00 19 16 3 0 0 0 0 0
......................TTGGGGACACCATCAGAACA................................................................................................................................................................................................................. 20 2 1 18.00 18 18 0 0 0 0 0 0
.......................TGGGGACACCATCAGAACACCA.............................................................................................................................................................................................................. 22 3 1 6.00 6 6 0 0 0 0 0 0
..................................................GTAAGTTCCGACCCGCAC....................................................................................................................................................................................... 18 3 20 5.15 103 102 0 1 0 0 0 0
......................TTGGGGACACCATCAGAAC.................................................................................................................................................................................................................. 19 1 1 5.00 5 5 0 0 0 0 0 0
.......................TGGGGACACCATCAGAACAGCA.............................................................................................................................................................................................................. 22 3 3 4.33 13 13 0 0 0 0 0 0
......................TTGGGGACACCATCAGAA................................................................................................................................................................................................................... 18 1 1 3.00 3 3 0 0 0 0 0 0
......................TTGGGGACACCATCAGAGCCA................................................................................................................................................................................................................ 21 2 1 3.00 3 3 0 0 0 0 0 0
......................TTGGGGACACCATCAGAACCCA............................................................................................................................................................................................................... 22 3 1 2.00 2 2 0 0 0 0 0 0
......................................................................................................................................ATATCTGATCTGAATTCTTGGATAAC........................................................................................... 26 0 1 2.00 2 0 0 0 0 2 0 0
......................TTGGGGACACCATCAGAACAA................................................................................................................................................................................................................ 21 2 1 2.00 2 2 0 0 0 0 0 0
......................TTGGGGACACCATCAGAACAG................................................................................................................................................................................................................ 21 3 4 1.25 5 5 0 0 0 0 0 0
......................TTGGGGACACCATCAGAACCA................................................................................................................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0
.............................................GTTCCGTAAGTTCCGCCCCACCCACA.................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0
...................ACATTGAGGACACCATCAGAACCA................................................................................................................................................................................................................ 24 0 1 1.00 1 0 0 0 0 1 0 0
......................TTGAGGACACCATCAGAACCACA.............................................................................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................TTTTATGCTTAGAGTTTCGATACCAGA............................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................................................................................TCTTGGATAACGCTTTGTCAAATC.............................................................................. 24 0 1 1.00 1 0 0 0 0 0 1 0
.......................................ACCACAGTTCCGTAAGTTCCGC.............................................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0
...................ACATTGAGGACACCATCAGAAC.................................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 1 0 0 0
......................TTGGGGACACCATCAGAACAC................................................................................................................................................................................................................ 21 3 1 1.00 1 0 1 0 0 0 0 0
........................................................................GAAAATTTACCAAATTGGAAACC............................................................................................................................................................ 23 0 1 1.00 1 0 0 0 0 0 1 0
......................................................................................................................................................CTTGGATAACGCTTTGTCAAATCGAAC.......................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0
......................TTGCGGACACCATCAGAACAGCA.............................................................................................................................................................................................................. 23 3 1 1.00 1 1 0 0 0 0 0 0
.......................TGGGGACACCATCAGAACCA................................................................................................................................................................................................................ 20 1 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................GCTTAGAGTTTCGATACCAG................................................................................................................................ 20 0 1 1.00 1 0 0 0 1 0 0 0
...............AGCAACATTGAGGACACCATCA...................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0
......................TTGAGGACACCATCAGAACAGCA.............................................................................................................................................................................................................. 23 2 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................................................CTAATATCTGATCTGAATTCTTGGATA............................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0
......................TTGGGGACACCATCAGAAGCA................................................................................................................................................................................................................ 21 2 1 1.00 1 1 0 0 0 0 0 0
.......................TGGGGACACCATCAGAACGCCA.............................................................................................................................................................................................................. 22 3 1 1.00 1 1 0 0 0 0 0 0
.......................TGGGGACACCATCAGAACA................................................................................................................................................................................................................. 19 2 2 1.00 2 2 0 0 0 0 0 0
...............................................................................................................................AGCACTAATATCTGATCTG......................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................................................................................GATAACGCTTTGTCAAATCGAACG......................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0
..........CAAACAGCAACATTGAGGACA............................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0
................................................................................................CTTTTATGCTTAGAGTTTCGATACC.................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................................................AGCACTAATATCTGATCTGAATT..................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0
..............CAGCAACATTGAGGACACCA......................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................................................................CTTGGATAACGCTTTGTCAAATCGAA........................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0
......................TTGGGGACACCATCAGAACAACA.............................................................................................................................................................................................................. 23 2 1 1.00 1 1 0 0 0 0 0 0
...........AAACAGCAACATTGAGGA.............................................................................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0
......................TTGGGGACACCATCAGAAA.................................................................................................................................................................................................................. 19 2 6 0.67 4 3 1 0 0 0 0 0
......................TTGTGGACACCATCAGAACAGCA.............................................................................................................................................................................................................. 23 3 2 0.50 1 1 0 0 0 0 0 0
...........................................................................................AACCACTTTTATGCTTGGTGTTTCT....................................................................................................................................... 25 3 2 0.50 1 0 0 0 0 0 0 1
.......................TGGGGACACCATCAGAAC.................................................................................................................................................................................................................. 18 1 2 0.50 1 1 0 0 0 0 0 0
......................TTGGGGACACCATCAGAACGGCA.............................................................................................................................................................................................................. 23 3 2 0.50 1 1 0 0 0 0 0 0
.......................TGGGGACACCATCAGAACAGC............................................................................................................................................................................................................... 21 3 5 0.40 2 0 1 1 0 0 0 0
......................TGGGGGACACCATCAGAGCCA................................................................................................................................................................................................................ 21 3 4 0.25 1 0 1 0 0 0 0 0
......................TTGGGGACACCATCAGAAACC................................................................................................................................................................................................................ 21 3 4 0.25 1 0 1 0 0 0 0 0
......................................................................AAGAGGATTGACCAAATTGGA................................................................................................................................................................ 21 3 7 0.14 1 0 0 0 0 0 0 1
.............ACCGGAAAATTGAGGACAC........................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 1 0 0 0

Anti-sense strand reads

CCGGAGATGAGTTTGTCGTTGTAACTCCTGTGGTAGTCTTGGTGTCAAGGCATTCAAGGCGGGGTGGGTGTTCTTTTAAATGGTTTAACCTTTGGTGAAAATACGAATCTCAAAGCTATGGTCTTTTTCGTGATTATAGACTAGACTTAAGAACCTATTGCGAAACAGTTTAGCTTGCATGTATGTATATATAAAAGATACTAAAAAGATATTAAAAAGAAAAACTTTCAAAGAACTTATTTAAAACGCAT
*******************************************************************************************..((((.((.(((((((.(((..((((.............))))))).))))))).)))))).************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M040
female body
...................TGTTACGCCTGTGGTAGTTTTG.................................................................................................................................................................................................................. 22 3 1 1.00 1 1
......................................................CACGGCGGGGTCGGTGTTCT................................................................................................................................................................................. 20 2 2 0.50 1 1
...................................................................................................TATACGAATCTCAAAGCTG..................................................................................................................................... 19 2 2 0.50 1 1
....................................................TACACGGCGGGGTGGGTGTT................................................................................................................................................................................... 20 2 2 0.50 1 1
............................................................................................TGGTGAAAATAGGAATCTAA........................................................................................................................................... 20 2 2 0.50 1 1
.....................................................TCAAGGCGGTGTGGGCGT.................................................................................................................................................................................... 18 2 9 0.22 2 2
................................................................TGGGTGTTCTCGTTAATGGTT...................................................................................................................................................................... 21 3 10 0.10 1 1
....................................................................................................................................ATTGTCGACTAGATTTAAGA................................................................................................... 20 3 11 0.09 1 1
.........................................................GGCGGGGTCGGTTTTCTT................................................................................................................................................................................ 18 2 13 0.08 1 1
.......................................................................................................CGAGTATCAAAGCGATGGT................................................................................................................................. 19 3 15 0.07 1 1
....................................................TACACGGCGGGGTGGGTG..................................................................................................................................................................................... 18 2 19 0.05 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 XR_group8:8970713-8970963 - dps_3398 GGCCTCTACTCAAACAGCAACATTGAGGACACCATCAGAACCACAGTTCCGTAAGTTCCGCCCCACCCACAAGAAAA----TTTACCAAATTGGAAACCACTTTTA-T--------------------------------------------------GCTTAGAGTTTCGA---TACCA--GAAAA----------------------------------AGCACTAATATCTGATCTGAAT--------TCTT---------GGA---TAACGCTTTG---TCA---AATCGAAC-G--------TACATACATATATATTTTCTATGATTTTTCTATAATTT----------------------------TTCTTT-------TTGAAAG----TTTCT-TGAATAAA--------TTTTGCGTA
droPer2 scaffold_50:234681-234931 + GGCCTCTACTCAAACAGCAACATTGAGGACACCATCAGAACCACAGTTCCGTAAGTTCCGCCCCACCCACAAGAAAA----TTTACCAAATTGGAAACCACTTTTA-T--------------------------------------------------GCTTAGAGTTTCGA---TACCA--GAAAA----------------------------------AGCACTAATATCTGATCTGAAT--------TCTT---------GGA---TAACGCTTTG---TCA---AATCGAAC-G--------TACATACATATATATTTTCTATGATTTTTCTATAATTT----------------------------TTCTTT-------TTGAAAG----TTTCT-TGAATAAA--------TTTTGCGTA
droWil2 scf2_1100000004511:8272879-8273217 - GGCCTCTACTCGAACAGCAACATTGAGGACACCATCAGAACAACAGTTCCGTAAGTT--G--TCATCTA--AGA-AAATTGTTTAACA-CACGGCAA---CT------------AAATAAACAAAAATAATAATAATAAAACCCAAAAGCTATTTCATGCTA---------------TAT-TAAAAAAAGAAACAAAAAACAAAAACCAAAACGAATATTAAACACTAATTATT-----GAATCTTCTATTT-TT--------TGAAAATTTACGCT-TGAAATCA----ATTGAAACAAAATTAAACACAAAC-----TATTTTCTTACTTTCCTCTTTTATTT---------------AACTTTTTCT--GTTT--TTTTGATTTGA------GAAATTT-TTAATAAAAATCTAAATTTTGCGTA
droVir3 scaffold_13049:6280678-6280892 + dvi_18634 GGTCTGTACTCCAACAACAACATTGAGGACACCATCAGAACAACAGTTCCGTAAGTTT-A--CCATC-------------------CA-CTTGGAAA---CCTTTA-TGCCACTCAACTGACAATA----------------TCAAAA----------GCTTAG---TT-------ACAA--TAC-----------------A-----------------ATACACTAACAA---ATTTGAATA-------TTTT---------CGA---ATACGCT--G---TTA---A------------------------------------------------------------CCAACAAAATTGCGATA------T---TTTTGAAAA--------------AT-TGAATAAAATAATTTGATTTGCGTA
droMoj3 scaffold_6680:4593833-4594064 + GGTCTCTACTCCAGCAATAATATTGAGGACACCATCAGAACAACAGTTCCGTAAGTTT-A--CCACT-------------------CA-TTTGGAATCCTCTTTAA-AGCTACTCAACTGACAATA----------------TCAAAT----------GCTTAG---TT-------ACAAAAGAC----------------AA-----------------ATACACTAACCAGC-----AAAC--------T-TT---------TTG---AAACTCT--G---TTA---A--------------------------------------------------C-------AACCAACA-ATTTGAG----AT--ATTT--TTTGAAAAAAA--AGAGCAAATTT-TGAATAAAATACTTTGGTTTGCGTA
droGri2 scaffold_15072:91593-91814 + GGTCTGTACTCAAACCACAACATTGAGGACACCATCAGAACAACAGTTCCGTAAGTTT-A--CCACT-------------------CA-CTTGGAAT---TCCTTA-TGCTACTCAACTGACAATA----------------TCAAAA----------GCTTAG---TT-------ACAA--AAC-----------------A-----------------GTACACTAACAA---ATTTGAAT--------TTTTGAATTTTTCGGA---TTACGCT--G---TTA---A------------------------------------------------------------CAAACA-AATTGAG----AT--ATTA--TTTAAAA---------------AT-TGAATAAAATATTTGAAATCTCGTA
droAna3 scaffold_13337:8007654-8007880 - GGTCTGTACTCCAACAGCAACATCGAGGATACCATCAGGACAACAGTTCCGTAAGTT--G--CCAAC-T---GA-AA----TATACCA-TTTGGAAA--ACTCTTA-T--------------------------------------------------GCTTAG---CTCGA---AACAAAAGAAAA--------------TT-----------------TACCACTAATATCT-----GAAC--------T-TT---------GGA---TTACGCT-TG---TCA---AATTGAAC-A--------T--------------------A----------------T--CGCCTATATAATTACGTTTCT-TTACTCTTTTTGGAAATTG------CAATTAT-TGAATAAA---------TCTGCGTA
droBip1 scf7180000396541:168324-168550 - GGTCTGTACTCCAACAGCAACATCGAGGATACCATCAGGACAACAGTTCCGTAAGTT--G--CCAAC-T---GA-AA----TATACCA-TTTGGAAA--ACTCTTA-T--------------------------------------------------GCTTAG---CTCGA---AACAAAAGAAAT---------------A-----------------TTCCACTAATATCT-----GAAC--------T-TT---------GGA---TTACGCT-TG---TCA---AATTGAAC-A--------T--------------------A----------------T--TGCCTATATAATTACGTTTCT-TTACTCTTTTTGGAAATTG------CAATTTACTGAATAAA---------TCTGCGTA
droKik1 scf7180000302474:350748-350983 - GGTCTGTACTCCAACAGCAACATCGAGGACACCATCAGAACCACAGTTCCGTAAGTT--G--TCACCCA---GA-AA----TTTACCG-TCTGGAAT---CTCCTATT--------------------------------------------------GCTTAG---CTCGAATAAACAA-TGAAAA----------------------------------ACCACTAATAACC-----GAAC--------T-TT---------GAA---TTACGCT-TG---TCACAAAATTGAAA-A--------CACACAC----------TCTAT----------------TT-TGCCTAT--AATTACGTT-CAT---TTCTTTTTGGAATTTG------CAATTTT-TGAATAAA---------TCTGCGTA
droFic1 scf7180000453833:810879-811096 + GGCCTGTACTCCAACCACAACATCGAGGACACCATCAGATCAACAGTTCCGTAAGTT--G--CCACCCA---GA-AA----T-TACCA-CTTGGAAA---CTCTTA-A--------------------------------------------------GCTTAG---CTCGA---TACAA-TGAAAA----------------------------------ACCACTAATATCC-----GAAC--------T-TT---------GGA---ATACGCT-TG---TCA---AATTGAAA-A--------T--------------------T----------------TA-CGCCTATT-ATTTACGCAACT-T--TCT--TTTGGAATTGA------CATTTTT-TGAATAAA---------TCTGCGTA
droEle1 scf7180000491268:53583-53801 - GGCCTATACTCCAACAACAACATCGAGGACACCATCAGATCAACAGTTCCGTAAGTT--G--TCACCCA---GA-AA----TTTACCA-TCTGGAAA---CTCTTA-T--------------------------------------------------GCTTAG---CTCGA---TACAA-TGAAAA----------------------------------ACGACTAATATCT-----GAAT--------T-TT---------GAA---AAACGCT-TG---TCA---AATTGAAC-A--------T--------------------T----------------TA-AGCCTATT-ATTTACGCTTTT-T--TTC--TTTGGATTTTG------CTATATT-TGAATAAA---------TCTGCGTA
droRho1 scf7180000779204:274805-275023 + GGCCTGTACTCCAACAACAACATCGAGGACACCATCAGATCAACAGTTCCGTAAGTT--G--CCACCCA---GA-AA----TATACCA-TCTGGAAA---CTCTTA-T--------------------------------------------------GCTTAG---CTCGA---TACAA-TGAAAA----------------------------------ACCACTAATATCT-----GAAC--------T-TT---------GGA---ATACGCT-TG---TCA---AATTGAAC-A--------T--------------------T----------------TA-AGCCTATT-ATTTACGCTTCA-T--TTC--TTTGGATTTTG------CTATTAT-TGAATAAA---------TCTGCGTA
droBia1 scf7180000302428:10565328-10565546 + GGCCTGTACTCCAACAACAACATCGAGGACACCATCAGATCTACAGTTCCGTAAGTT--G--CCATCCA---GA-AA----TGTAGCA-TCTGGAAA---CTCCTA-T--------------------------------------------------TCTAAG---CTCGA---AACAA-TGAAAA----------------------------------ACCACTAATATCT-----GAAC--------T-TT---------GGA---AAACGCT-TG---TCA---AATTGAAC-A--------C--------------------T----------------TA-AGCCTATT-ATTTACGCTATC-T--TCC--TTTGGATTTTG------CAATTTT-TGAATAAA---------CCAGCGTA
droTak1 scf7180000414445:78812-79030 - GGCCTGTACTCCAACAACAACATCGAGGACACCATCAGATCCACAGTTCCGTAAGTT--G--CCAACCA---GA-AA----TTGACCG-TCTGGAAA---CTCTTA-T--------------------------------------------------GCTTAG---CTCGA---CACAA-TGAAAA----------------------------------ACCACTAATATCT-----GAAC--------T-TT---------GGA---ATACGCT-TG---TCA---AATTGAAC-T--------T--------------------T----------------AA-AGCCTATA-ATTTACGCTATT-T--TCC--TTTGGATTTTG------CAATTAC-TGAATAAA---------CCAGCGTA
droEug1 scf7180000409524:33303-33506 - GGCCTGTACTCCAACAGCAACATCGAGGACACCATCAGATCAACAGTTCCGTAAGTT--G--CCACCCA---GA-AA----TTTACCA-TTTGGAAA---CTCTTA-T--------------------------------------------------GCTTAG---CTCGA---TACAA-TGAAAA--------------AA-----------------AAACACTAATATCT-----GAAC--------T-TT---------GGA---AAACGCT-TG---TCA---AATTGAAC-A--------T--------------------A----------------TAAAGCCT-------------------------TTTGGATTTTG------CAATTAC-TGAATAAA---------CCTGCGTA
dm3 chr3L:8628132-8628358 + GGCCTGTACTCCAACAACAACATCGAGGACACCATCAGATCCACAGTTCCGTAAGTT--G--TCACCCA---GA-AA----TGTACCA-TCTGGAAA---CTCCTA-T--------------------------------------------------GCTTAG---CTCGA---TACAA-TGAAAA-----AA---A---AA-----------------AAACACTAATATAT-----GAAC--------TTTT---------GGA---ATTCGCT-TG---TCA---AATTGAAC-T--------T--------------------A----------------TA-AGCCTATG-AATTACGCTACAT--ATTC--TTTGGATTTTG------CAATTTA-CGAATAAA---------CCTGCGTA
droSim2 3l:8417533-8417757 + GGCCTGTACTCCAACAACAACATCGAGGACACCATCAGATCCACAGTTCCGTAAGTT--G--TCACCCA---GA-AA----TGTACCA-TCTGGAAA---CTCCTA-T--------------------------------------------------GCTTAG---CTCGA---TACAA-TGAAAA----------A---AA-----------------GAACACTAATATAT-----GAAC--------TTTT---------GGA---ATTCGCT-TG---TCA---AATTGAAC-G--------T--------------------A----------------TA-AGCCTATG-AATTACGCTACAT--ATTC--TTTGGATTTTG------CAATTTA-CGAATAAA---------CCTGCGTA
droSec2 scaffold_0:906691-906915 + GGCCTGTACTCCAACAACAACATCGAGGACACCATCAGATCCACAGTTCCGTAAGTT--G--TCACCCA---GA-AA----TATACCA-TCTGGAAA---CTACTA-T--------------------------------------------------GCTTAG---CTCGA---TACAA-TGAAAA----------A---AA-----------------AAACACTAATATAT-----GAAC--------TTTT---------GGA---ATTCGCT-TG---TCA---AATTGAAC-T--------T--------------------A----------------TA-TGCCTATG-AATTACGCTACAT--ATTC--TTTGGATTTTG------CAATTTA-CGAATAAA---------CCTGCGTA
droYak3 3L:3284076-3284284 - GGCCTGTACTCCAACAACAACATCGAGGACACCATCAGATCCACAGTTCCGTAAGTT--G--TCACCCA---GA-AA----TGTACCA-CTTGGAAA---CTCTTA-T--------------------------------------------------GCTTAG---CTCAA---TACAA-CGAAAA------A---A---AA-----------------AAACACTAATATTT-----GAAC--------T-TT---------GGA---AAAAGCT-TG---TCA---AATTGAA---------------------------------------------------------------TTACGCTACAT--TTTC--TTTGGATTTTG------CTATTTA-TGAATAAA---------CCTGCGTA
droEre2 scaffold_4784:5418089-5418319 - der_731 GGCCTATACTCCAACAACAACATCGAGGACACCATCAGATCCACAGTTCCGTAAGTT--G--TCACCCA---GA-AA----CGTACCA-TCTGGAAA---CTCTTA-T--------------------------------------------------GCTTAG---CTCGA---TACAA-TGAAAAAAGAAAA---A---AA-----------------AAACACTAATATTT-----GAAC--------T-TT---------GGA---ATACGCT-TG---TCA---AATTGAAT-T--------T--------------------A----------------TA-AGCCTATG-AATTACGCTACAT--ATTC--TTTGGATTTTG------CAATTTA-TGAATAAA---------CCTGCGTA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
GGCCTCTACTCAAACAGCAACATTGAGGACACCATCAGAACCACAGTTCCGTAAGTTCCGCCCCACCCACAAGAAAA----TTTACCAAATTGGAAACCACTTTTA-T--------------------------------------------------GCTTAGAGTTTCGA---TACCA--GAAAA----------------------------------AGCACTAATATCTGATCTGAAT--------TCTT---------GGA---TAACGCTTTG---TCA---AATCGAAC-G--------TACATACATATATATTTTCTATGATTTTTCTATAATTT----------------------------TTCTTT-------TTGAAAG----TTTCT-TGAATAAA--------TTTTGCGTASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
....................................................................................................................................................................................................................................ATATCTGATCTGAAT--------TCTT---------GGA---TAAC..........................................................................................................................................................2612.0020000000020
.............................................GTTCCGTAAGTTCCGCCCCACCCACA.....................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
...................ACATTGAGGACACCATCAGAACCA.................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000010
......................TTGAGGACACCATCAGAACCACA...............................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
.....................................................................................................TTTTA-T--------------------------------------------------GCTTAGAGTTTCGA---TACCA--GA....................................................................................................................................................................................................................................................2711.0010100000000
...........................................................................................................................................................................................................................................................TCTT---------GGA---TAACGCTTTG---TCA---AATC.......................................................................................................................................2411.0010000010000
.......................................ACCACAGTTCCGTAAGTTCCGC...............................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
...................ACATTGAGGACACCATCAGAAC...................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000001000
........................................................................GAAAA----TTTACCAAATTGGAAACC.........................................................................................................................................................................................................................................................................................................................................2311.0010000010000
............................................................................................................................................................................................................................................................CTT---------GGA---TAACGCTTTG---TCA---AATCGAAC-..................................................................................................................................2711.0010100000000
..............................................................................................................................................................GCTTAGAGTTTCGA---TACCA--G.....................................................................................................................................................................................................................................................2011.0010000001000
...............AGCAACATTGAGGACACCATCA.......................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
.................................................................................................................................................................................................................................CTAATATCTGATCTGAAT--------TCTT---------GGA---TA............................................................................................................................................................2711.0010100000000
.............................................................................................................................................................................................................................AGCACTAATATCTGATCTG............................................................................................................................................................................................1911.0010100000000
.........................................................................................................................................................................................................................................................................GA---TAACGCTTTG---TCA---AATCGAAC-G--------.........................................................................................................................2411.0010100000000
..........CAAACAGCAACATTGAGGACA.............................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
....................................................................................................CTTTTA-T--------------------------------------------------GCTTAGAGTTTCGA---TACC.........................................................................................................................................................................................................................................................2511.0010100000000
.............................................................................................................................................................................................................................AGCACTAATATCTGATCTGAAT--------T................................................................................................................................................................................2311.0010100000000
..............CAGCAACATTGAGGACACCA..........................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
............................................................................................................................................................................................................................................................CTT---------GGA---TAACGCTTTG---TCA---AATCGAA....................................................................................................................................2611.0010100000000
...........AAACAGCAACATTGAGGA...............................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
droPer2
GGCCTCTACTCAAACAGCAACATTGAGGACACCATCAGAACCACAGTTCCGTAAGTTCCGCCCCACCCACAAGAAAA----TTTACCAAATTGGAAACCACTTTTA-T--------------------------------------------------GCTTAGAGTTTCGA---TACCA--GAAAA----------------------------------AGCACTAATATCTGATCTGAAT--------TCTT---------GGA---TAACGCTTTG---TCA---AATCGAAC-G--------TACATACATATATATTTTCTATGATTTTTCTATAATTT----------------------------TTCTTT-------TTGAAAG----TTTCT-TGAATAAA--------TTTTGCGTASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..........................................................................................................................................................................................................................................................................................................................ATATATATTTTCTATGAT................................................................................................1812.002200000
..........................GGACACCATCAGAACCACAGTTCC..........................................................................................................................................................................................................................................................................................................................................................................................2412.002200000
.............................................................................................................................................................................................................................AGCACTAATATCTGATCTGA...........................................................................................................................................................................................2011.001100000
.............................................GTTCCGTAAGTTCCGCCCC............................................................................................................................................................................................................................................................................................................................................................................1911.001010000
...............AGCAACATTGAGGACACCATC........................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
.......................TGAGGACACCATCAGAACCACAG..............................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
......................................................................................................................................................................................................................................ATCTGATCTGAAT--------TCTT---------GGA---TAACGC........................................................................................................................................................2611.001010000
................GCAACATTGAGGACACCATCA.......................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
...............................................................................................................................................................................................................................................................................AACGCTTTG---TCA---AATCGAAC-G--------.........................................................................................................................2111.001010000
.....................ATTGAGGACACCATCAGAACCACA...............................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
...................................................................................................................................................................................A--GAAAA----------------------------------AGCACTAATATCTGATCTGAAT--------.................................................................................................................................................................................2811.001010000
.............ACAGCAACATTGAGGACACCATCAGA.....................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
.................................................................................................................................................................TAGAGTTTCGA---TACCA--GAAA..................................................................................................................................................................................................................................................2011.001010000
droWil2
GGCCTCTACTCGAACAGCAACATTGAGGACACCATCAGAACAACAGTTCCGTAAGTT--G--TCATCTA--AGA-AAATTGTTTAACA-CACGGCAA---CT------------AAATAAACAAAAATAATAATAATAAAACCCAAAAGCTATTTCATGCTA---------------TAT-TAAAAAAAGAAACAAAAAACAAAAACCAAAACGAATATTAAACACTAATTATT-----GAATCTTCTATTT-TT--------TGAAAATTTACGCT-TGAAATCA----ATTGAAACAAAATTAAACACAAAC-----TATTTTCTTACTTTCCTCTTTTATTT---------------AACTTTTTCT--GTTT--TTTTGATTTGA------GAAATTT-TTAATAAAAATCTAAATTTTGCGTASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................TGAGGACACCATCAGAACAACA...............................................................................................................................................................................................................................................................................................................................................................................................2218.00870010
...................ACATTGAGGACACCATCAGAACAAC................................................................................................................................................................................................................................................................................................................................................................................................2513.00330000
........................GAGGACACCATCAGAACAACAGT.............................................................................................................................................................................................................................................................................................................................................................................................2313.00300120
.....................ATTGAGGACACCATCAGAACAACAGTT............................................................................................................................................................................................................................................................................................................................................................................................2713.00330000
.....................ATTGAGGACACCATCAGAACAACAG..............................................................................................................................................................................................................................................................................................................................................................................................2512.00220000
...................ACATTGAGGACACCATCAGAACAACA...............................................................................................................................................................................................................................................................................................................................................................................................2612.00220000
......................TTGAGGACACCATCAGAACA..................................................................................................................................................................................................................................................................................................................................................................................................2012.00220000
....................CATTGAGGACACCATCAGAACAAC................................................................................................................................................................................................................................................................................................................................................................................................2412.00220000
..........................................................................................................................................................................................AAAGAAACAAAAAACAAAAACC............................................................................................................................................................................................................................2212.00220000
...................ACATTGAGGACACCATCAGAAC...................................................................................................................................................................................................................................................................................................................................................................................................2212.00220000
....TCTACTCGAACAGCAACA......................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
...CTCTACTCGAACAGCAACATTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
......................TTGAGGACACCATCAGAACAACA...............................................................................................................................................................................................................................................................................................................................................................................................2311.00110000
GGCCTCTACTCGAACAGCAACAT.....................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
.............................CACCATCAGAACAACAGTTC...........................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
..................AACATTGAGGACACCATCAGAACAAC................................................................................................................................................................................................................................................................................................................................................................................................2611.00110000
.....................ATTGAGGACACCATCAGAAC...................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000
........................GAGGACACCATCAGAACAACA...............................................................................................................................................................................................................................................................................................................................................................................................2111.00110000
.....CTACTCGAACAGCAACATTGAGGA...............................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
.........TCGAACAGCAACATTGAGGACACC...........................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100
............AACAGCAACATTGAGGAC..............................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000
......................TTGAGGACACCATCAGAACAACAG..............................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
.....CTACTCGAACAGCAACAT.....................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000
.........................................................................................................................................................................................AAAAGAAACAAAAAACAAAAA..............................................................................................................................................................................................................................21120.08100010
.........................................................................................................................................................................................AAAAGAAACAAAAAACAAA................................................................................................................................................................................................................................19180.06100010
droVir3
GGTCTGTACTCCAACAACAACATTGAGGACACCATCAGAACAACAGTTCCGTAAGTTT-A--CCATC-------------------CA-CTTGGAAA---CCTTTA-TGCCACTCAACTGACAATA----------------TCAAAA----------GCTTAG---TT-------ACAA--TAC-----------------A-----------------ATACACTAACAA---ATTTGAATA-------TTTT---------CGA---ATACGCT--G---TTA---A------------------------------------------------------------CCAACAAAATTGCGATA------T---TTTTGAAAA--------------AT-TGAATAAAATAATTTGATTTGCGTASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................TTGAGGACACCATCAGAACAACA...............................................................................................................................................................................................................................................................................................................................................................................................2315.005050000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................GACAATA----------------TCAAAA----------GCTTAG---TT-------ACA.........................................................................................................................................................................................................................................................2412.002001000000000000001000000000000000000000000000000000000000000000
......................TTGAGGACACCATCAGAACA..................................................................................................................................................................................................................................................................................................................................................................................................2012.002010000000000000000010000000000000000000000000000000000000000000
.....................ATTGAGGACACCATCAGAACAACAGTT............................................................................................................................................................................................................................................................................................................................................................................................2712.002100000000000000010000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................G---TTA---A------------------------------------------------------------CCAACAAAATTGCGAT..............................................................2112.002000000000000000000000000000000000200000000000000000000000000000
..................AACATTGAGGACACCATCAGAA....................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000001000000000000000000000000000000000000000000000
.......................TGAGGACACCATCAGAACAACA...............................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
....................CATTGAGGACACCATCAGAACAACA...............................................................................................................................................................................................................................................................................................................................................................................................2511.001010000000000000000000000000000000000000000000000000000000000000
........................GAGGACACCATCAGAACAACAGTT............................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000010000000000000000000000000000000000000000000000
.........................AGGACACCATCAGAACAACAGT.............................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
............AACAACAACATTGAGGACACCATCA.......................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000001000000000000000000000000000000000000000000000
...............................................................................................................................................CAAAA----------GCTTAG---TT-------ACAA--TAC-----------------A-----------------AT..............................................................................................................................................................................................................2311.001000000000000001000000000000000000000000000000000000000000000000
......................TTGAGGACACCATCAGAAC...................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000100
...................ACATTGAGGACACCATCAGAACAACA...............................................................................................................................................................................................................................................................................................................................................................................................2611.001010000000000000000000000000000000000000000000000000000000000000
.......................................................................................................TTA-TGCCACTCAACTGACAATA----------------..............................................................................................................................................................................................................................................................................................2211.001000000000000000001000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................TTT---------CGA---ATACGCT--G---TTA---A------------------------------------------------------------CCAACA........................................................................2411.001000000000000000001000000000000000000000000000000000000000000000
..........................GGACACCATCAGAACAACAGTTCCA.........................................................................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................TT---------CGA---ATACGCT--G---TTA---A------------------------------------------------------------CC............................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
......................TTGAGGACACCATCAGAACAACAGTTCC..........................................................................................................................................................................................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
.......................TGAGGACACCATCAGAAC...................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................TGAATA-------TTTT---------CGA---ATACGCT--.....................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
.........................AGGACACCATCAGAACAAC................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................A---ATTTGAATA-------TTTT---------CGA---ATACGCT--G---T................................................................................................................................................2611.001000000000000000001000000000000000000000000000000000000000000000
....................................................................................................................ACTGACAATA----------------TCAAAA----------GCT...........................................................................................................................................................................................................................................................................1911.001000000000000000001000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................CAAAATTGCGATA------T---TTTTGA.............................................2011.001000000000000000001000000000000000000000000000000000000000000000
...............................................................................................................ACTCAACTGACAATA----------------TCAAAA----------GCTT..........................................................................................................................................................................................................................................................................2511.001000000000000000001000000000000000000000000000000000000000000000
................................................................................................................................................AAAA----------GCTTAG---TT-------ACAA--TAC-----------------A-----------------ATACACT.........................................................................................................................................................................................................2711.001000000000000000000100000000000000000000000000000000000000000000
................................................................................................................................................................................ACAA--TAC-----------------A-----------------ATACACTAACAA---A................................................................................................................................................................................................2111.001000000000000000000100000000000000000000000000000000000000000000
................................................................................................................................................................TTAG---TT-------ACAA--TAC-----------------A-----------------ATACACT.........................................................................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
.......................TGAGGACACCATCAGAACA..................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000001000000000000000000000000000000000000000000000
.....................ATTGAGGACACCATCAGAACAACAGTTCCC.........................................................................................................................................................................................................................................................................................................................................................................................3011.001000000000000000000000000000000000000000000000000000000000100000
............AACAACAACATTGAGGACAC............................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000100000000000000000000000000000000000000000
...................ACATTGAGGACACCATCAG......................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000001000000000000000000000000000000000000000000000
.....................ATTGAGGACACCATCAGAACAACA...............................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000100000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................GCT--G---TTA---A------------------------------------------------------------CCAACAAAATTGCGAT..............................................................2411.001000000000000000000000100000000000000000000000000000000000000000
............AACAACAACATTGAGGACACCA..........................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
............AACAACAACATTGAGGACA.............................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000001000000000000000000000000000000000000000000000
...................ACATTGAGGACACCATCAGAACAACG...............................................................................................................................................................................................................................................................................................................................................................................................2611.001100000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................A---ATACGCT--G---TTA---A------------------------------------------------------------CCAACAAAA.....................................................................2211.001000000000000000000100000000000000000000000000000000000000000000
...............................................................................................................................................CAAAA----------GCTTAG---TT-------ACAA--TAC-----------------A-----------------ATA.............................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................AATA-------TTTT---------CGA---ATACGCT--G---T................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
...............AACAACATTGAGGACACCA..........................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000001000000000000000000000000000000000000000000000000
............AACAACAACATTGAGGACACCATCAGAACAACAGTTCC..........................................................................................................................................................................................................................................................................................................................................................................................3811.001000000000000000000000000000000000000000000000000000000000010000
..................AACATTGAGGACACCATCAGAAC...................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000000000000000000000000000000000000000000000000000000000000
......................TTGAGGACACCATCAGAACAACAGTTCCC.........................................................................................................................................................................................................................................................................................................................................................................................2911.001010000000000000000000000000000000000000000000000000000000000000
......................TTGAGGACACCATCAGAACAA.................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000010000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................G---TTA---A------------------------------------------------------------CCAACAAAATTGCGATA------T---TTT................................................2611.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................A----------GCTTAG---TT-------ACAA--TAC-----------------A-----------------ATACAC..........................................................................................................................................................................................................2311.001000000000000000001000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................CTAACAA---ATTTGAATA-------TTTT---------CGA---AT............................................................................................................................................................2511.001000000000000000000000010000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................TTTT---------CGA---ATACGCT--G---TTA---A------------------------------------------------------------CC............................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
............AACAACAACATTGAGGACACC...........................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
........................GAGGACACCATCAGAACAACA...............................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000100000000000000000000000000000000000000000000
droMoj3
GGTCTCTACTCCAGCAATAATATTGAGGACACCATCAGAACAACAGTTCCGTAAGTTT-A--CCACT-------------------CA-TTTGGAATCCTCTTTAA-AGCTACTCAACTGACAATA----------------TCAAAT----------GCTTAG---TT-------ACAAAAGAC----------------AA-----------------ATACACTAACCAGC-----AAAC--------T-TT---------TTG---AAACTCT--G---TTA---A--------------------------------------------------C-------AACCAACA-ATTTGAG----AT--ATTT--TTTGAAAAAAA--AGAGCAAATTT-TGAATAAAATACTTTGGTTTGCGTASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
........CTCCAGCAATAATATTGAGGACACC...........................................................................................................................................................................................................................................................................................................................................................................................................2511.001000010
...CTCTACTCCAGCAATAATATTGAGGACA.............................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
droGri2
GGTCTGTACTCAAACCACAACATTGAGGACACCATCAGAACAACAGTTCCGTAAGTTT-A--CCACT-------------------CA-CTTGGAAT---TCCTTA-TGCTACTCAACTGACAATA----------------TCAAAA----------GCTTAG---TT-------ACAA--AAC-----------------A-----------------GTACACTAACAA---ATTTGAAT--------TTTTGAATTTTTCGGA---TTACGCT--G---TTA---A------------------------------------------------------------CAAACA-AATTGAG----AT--ATTA--TTTAAAA---------------AT-TGAATAAAATATTTGAAATCTCGTASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.......................TGAGGACACCATCAGAACAACAG..............................................................................................................................................................................................................................................................................................................................................................................................2320.50110
................................................................................................................................................................................................................................................................AATTTTTCGGA---TTACGCT--G---TT...............................................................................................................................................2120.50110
droAna3
GGTCTGTACTCCAACAGCAACATCGAGGATACCATCAGGACAACAGTTCCGTAAGTT--G--CCAAC-T---GA-AA----TATACCA-TTTGGAAA--ACTCTTA-T--------------------------------------------------GCTTAG---CTCGA---AACAAAAGAAAA--------------TT-----------------TACCACTAATATCT-----GAAC--------T-TT---------GGA---TTACGCT-TG---TCA---AATTGAAC-A--------T--------------------A----------------T--CGCCTATATAATTACGTTTCT-TTACTCTTTTTGGAAATTG------CAATTAT-TGAATAAA---------TCTGCGTASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................GGATACCATCAGGACAACA...............................................................................................................................................................................................................................................................................................................................................................................................1912.002200000
..............................................................................................................................................................GCTTAG---CTCGA---AACAAAAGAA...................................................................................................................................................................................................................................................2112.002000002
..........................................ACAGTTCCGTAAGTT--G--CCAAC-........................................................................................................................................................................................................................................................................................................................................................................2111.001100000
...........CAACAGCAACATCGAGGATA.............................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
...............AGCAACATCGAGGATACCATCAGG.....................................................................................................................................................................................................................................................................................................................................................................................................2411.001000010
..................AACATCGAGGATACCATCAGG.....................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
................GCAACATCGAGGATACCATCAGGAC...................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
..................AACATCGAGGATACCATCAGGACAA.................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
.................CAACATCGAGGATACCATCAGGACAACA...............................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
..............CAGCAACATCGAGGATACCATCAGGACA..................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
................GCAACATCGAGGATACCATCAGGA....................................................................................................................................................................................................................................................................................................................................................................................................2411.001000010
.............ACAGCAACATCGAGGATACC...........................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
.......................................................................................................................................................................................................................................TCT-----GAAC--------T-TT---------GGA---TTACGCT-......................................................................................................................................................2011.001000010
..............................ACCATCAGGACAACAGTTCC..........................................................................................................................................................................................................................................................................................................................................................................................2011.001001000
.................CAACATCGAGGATACCATC........................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
................GCAACATCGAGGATACCATCAGGACA..................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
.............................................................................................................................................................................................................................................................TT---------GGA---TTACGCT-TG---TCA---AATTGAAC-A--------.........................................................................................................................2611.001000001
.............ACAGCAACATCGAGGATACCATCAGGAC...................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
.............ACAGCAACATCGAGGATACCATCAGG.....................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
...............AGCAACATCGAGGATACCATC........................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
................GCAACATCGAGGATACCATCAG......................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
.........................................................................................................................................................................................................................................................................................................................................................................................TTTTGGAAATTG------CAATTAT-TGAATAA..................2611.001000001
.........................AGGATACCATCAGGACAACA...............................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
...........................GATACCATCAGGACAACAGT.............................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
droBip1
GGTCTGTACTCCAACAGCAACATCGAGGATACCATCAGGACAACAGTTCCGTAAGTT--G--CCAAC-T---GA-AA----TATACCA-TTTGGAAA--ACTCTTA-T--------------------------------------------------GCTTAG---CTCGA---AACAAAAGAAAT---------------A-----------------TTCCACTAATATCT-----GAAC--------T-TT---------GGA---TTACGCT-TG---TCA---AATTGAAC-A--------T--------------------A----------------T--TGCCTATATAATTACGTTTCT-TTACTCTTTTTGGAAATTG------CAATTTACTGAATAAA---------TCTGCGTASizeHit CountTotal NormTotal
No Reads
droKik1
GGTCTGTACTCCAACAGCAACATCGAGGACACCATCAGAACCACAGTTCCGTAAGTT--G--TCACCCA---GA-AA----TTTACCG-TCTGGAAT---CTCCTATT--------------------------------------------------GCTTAG---CTCGAATAAACAA-TGAAAA----------------------------------ACCACTAATAACC-----GAAC--------T-TT---------GAA---TTACGCT-TG---TCACAAAATTGAAA-A--------CACACAC----------TCTAT----------------TT-TGCCTAT--AATTACGTT-CAT---TTCTTTTTGGAATTTG------CAATTTT-TGAATAAA---------TCTGCGTASizeHit CountTotal NormTotal
No Reads
droFic1
GGCCTGTACTCCAACCACAACATCGAGGACACCATCAGATCAACAGTTCCGTAAGTT--G--CCACCCA---GA-AA----T-TACCA-CTTGGAAA---CTCTTA-A--------------------------------------------------GCTTAG---CTCGA---TACAA-TGAAAA----------------------------------ACCACTAATATCC-----GAAC--------T-TT---------GGA---ATACGCT-TG---TCA---AATTGAAA-A--------T--------------------T----------------TA-CGCCTATT-ATTTACGCAACT-T--TCT--TTTGGAATTGA------CATTTTT-TGAATAAA---------TCTGCGTASizeHit CountTotal NormTotal
No Reads
droEle1
GGCCTATACTCCAACAACAACATCGAGGACACCATCAGATCAACAGTTCCGTAAGTT--G--TCACCCA---GA-AA----TTTACCA-TCTGGAAA---CTCTTA-T--------------------------------------------------GCTTAG---CTCGA---TACAA-TGAAAA----------------------------------ACGACTAATATCT-----GAAT--------T-TT---------GAA---AAACGCT-TG---TCA---AATTGAAC-A--------T--------------------T----------------TA-AGCCTATT-ATTTACGCTTTT-T--TTC--TTTGGATTTTG------CTATATT-TGAATAAA---------TCTGCGTASizeHit CountTotal NormTotal
No Reads
droRho1
GGCCTGTACTCCAACAACAACATCGAGGACACCATCAGATCAACAGTTCCGTAAGTT--G--CCACCCA---GA-AA----TATACCA-TCTGGAAA---CTCTTA-T--------------------------------------------------GCTTAG---CTCGA---TACAA-TGAAAA----------------------------------ACCACTAATATCT-----GAAC--------T-TT---------GGA---ATACGCT-TG---TCA---AATTGAAC-A--------T--------------------T----------------TA-AGCCTATT-ATTTACGCTTCA-T--TTC--TTTGGATTTTG------CTATTAT-TGAATAAA---------TCTGCGTASizeHit CountTotal NormTotal
No Reads
droBia1
GGCCTGTACTCCAACAACAACATCGAGGACACCATCAGATCTACAGTTCCGTAAGTT--G--CCATCCA---GA-AA----TGTAGCA-TCTGGAAA---CTCCTA-T--------------------------------------------------TCTAAG---CTCGA---AACAA-TGAAAA----------------------------------ACCACTAATATCT-----GAAC--------T-TT---------GGA---AAACGCT-TG---TCA---AATTGAAC-A--------C--------------------T----------------TA-AGCCTATT-ATTTACGCTATC-T--TCC--TTTGGATTTTG------CAATTTT-TGAATAAA---------CCAGCGTASizeHit CountTotal NormTotal
No Reads
droTak1
GGCCTGTACTCCAACAACAACATCGAGGACACCATCAGATCCACAGTTCCGTAAGTT--G--CCAACCA---GA-AA----TTGACCG-TCTGGAAA---CTCTTA-T--------------------------------------------------GCTTAG---CTCGA---CACAA-TGAAAA----------------------------------ACCACTAATATCT-----GAAC--------T-TT---------GGA---ATACGCT-TG---TCA---AATTGAAC-T--------T--------------------T----------------AA-AGCCTATA-ATTTACGCTATT-T--TCC--TTTGGATTTTG------CAATTAC-TGAATAAA---------CCAGCGTASizeHit CountTotal NormTotal
No Reads
droEug1
GGCCTGTACTCCAACAGCAACATCGAGGACACCATCAGATCAACAGTTCCGTAAGTT--G--CCACCCA---GA-AA----TTTACCA-TTTGGAAA---CTCTTA-T--------------------------------------------------GCTTAG---CTCGA---TACAA-TGAAAA--------------AA-----------------AAACACTAATATCT-----GAAC--------T-TT---------GGA---AAACGCT-TG---TCA---AATTGAAC-A--------T--------------------A----------------TAAAGCCT-------------------------TTTGGATTTTG------CAATTAC-TGAATAAA---------CCTGCGTASizeHit CountTotal NormTotal
No Reads
dm3
GGCCTGTACTCCAACAACAACATCGAGGACACCATCAGATCCACAGTTCCGTAAGTT--G--TCACCCA---GA-AA----TGTACCA-TCTGGAAA---CTCCTA-T--------------------------------------------------GCTTAG---CTCGA---TACAA-TGAAAA-----AA---A---AA-----------------AAACACTAATATAT-----GAAC--------TTTT---------GGA---ATTCGCT-TG---TCA---AATTGAAC-T--------T--------------------A----------------TA-AGCCTATG-AATTACGCTACAT--ATTC--TTTGGATTTTG------CAATTTA-CGAATAAA---------CCTGCGTASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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..................AACATCGAGGACACCATCA.......................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
..........................................ACAGTTCCGTAAGTT--G--TCACCCA---GA-.................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................TGAAC-T--------T--------------------A----------------TA-AGCCTATG-.......................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................TT---------GGA---ATTCGCT-TG---TCA---AATTGAA....................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
..........CCAACAACAACATCGAGGACA.............................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................GAAC--------TTTT---------GGA---ATTCGCT-TG---TC...............................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................GAAC--------TTTT---------GGA---ATTCGCT-TG---T................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................T--ATTC--TTTGGATTTTG------CATC.............................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........CAACAACAACATCGAGGA...............................................................................................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................ACCATCAGATCCACAGTTTTC.........................................................................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GGCCTGTACTCCAACAACAACATCGAGGACACCATCAGATCCACAGTTCCGTAAGTT--G--TCACCCA---GA-AA----TGTACCA-TCTGGAAA---CTCCTA-T--------------------------------------------------GCTTAG---CTCGA---TACAA-TGAAAA----------A---AA-----------------GAACACTAATATAT-----GAAC--------TTTT---------GGA---ATTCGCT-TG---TCA---AATTGAAC-G--------T--------------------A----------------TA-AGCCTATG-AATTACGCTACAT--ATTC--TTTGGATTTTG------CAATTTA-CGAATAAA---------CCTGCGTASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................CAACATCGAGGACACCATCAGATCCACAG..............................................................................................................................................................................................................................................................................................................................................................................................2911.00101000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................TTGGATTTTG------CAATTTA-CGAATAAA---------CCT.....2811.00101000000000000000
..............CAACAACATCGAGGACACC...........................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000000000100000
droSec2
GGCCTGTACTCCAACAACAACATCGAGGACACCATCAGATCCACAGTTCCGTAAGTT--G--TCACCCA---GA-AA----TATACCA-TCTGGAAA---CTACTA-T--------------------------------------------------GCTTAG---CTCGA---TACAA-TGAAAA----------A---AA-----------------AAACACTAATATAT-----GAAC--------TTTT---------GGA---ATTCGCT-TG---TCA---AATTGAAC-T--------T--------------------A----------------TA-TGCCTATG-AATTACGCTACAT--ATTC--TTTGGATTTTG------CAATTTA-CGAATAAA---------CCTGCGTASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................CAACATCGAGGACACCATC........................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
............................ACACCATCAGATCCACAGTT............................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
................ACAACATCGAGGACACCATCA.......................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
................ACAACATCGAGGACACCATCAGATCCACA...............................................................................................................................................................................................................................................................................................................................................................................................2911.0011000
....................................................................................................CTACTA-T--------------------------------------------------GCTTAG---CTCGA---TAC..........................................................................................................................................................................................................................................................2111.0011000
.....GTACTCCAACAACAACATCGAGGACA.............................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000
...................ACATCGAGGACACCATCAGATCC..................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000
.........................................................................................................A-T--------------------------------------------------GCTTAG---CTCGA---TACAA-TGAA...................................................................................................................................................................................................................................................2211.0011000
...........................................................................................................................................................................................................................................................................................................................................................................................TTGGATTTTG------CAATTTA-CG.......................1911.0010010
............................................................................................................................................................................................................................AAACACTAATATAT-----GAAC--------TTTT---------GGA---..............................................................................................................................................................2511.0011000
droYak3
GGCCTGTACTCCAACAACAACATCGAGGACACCATCAGATCCACAGTTCCGTAAGTT--G--TCACCCA---GA-AA----TGTACCA-CTTGGAAA---CTCTTA-T--------------------------------------------------GCTTAG---CTCAA---TACAA-CGAAAA------A---A---AA-----------------AAACACTAATATTT-----GAAC--------T-TT---------GGA---AAAAGCT-TG---TCA---AATTGAA---------------------------------------------------------------TTACGCTACAT--TTTC--TTTGGATTTTG------CTATTTA-TGAATAAA---------CCTGCGTASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................TCGAGGACACCATCAGATCCACAGTTCC..........................................................................................................................................................................................................................................................................................................................................................................................2811.00101000000000
...........CAACAACAACATCGAGGACACCATCA.......................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
.................................ATCAGATCCACAGTTCCGTAAGTT--G--TC............................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
.........................................................................................CTTGGAAA---CTCTTA-T--------------------------------------------------GCTTAG---CT...................................................................................................................................................................................................................................................................2311.00100000010000
.........................................................................................CTTGGAAA---CTCTTA-T--------------------------------------------------GCTTAG---CTCAA---TACA.........................................................................................................................................................................................................................................................3011.00100000010000
.........................................CACAGTTCCGTAAGTT--G--TC............................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
...................ACATCGAGGACACCATCAGATCC..................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
................ACAACATCGAGGACACCATC........................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
..................................TCAGATCCACAGTTCCGTAAGTT--G--TC............................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
....................CATCGAGGACACCATCAGATCCACA...............................................................................................................................................................................................................................................................................................................................................................................................2511.00110000000000
..................AACATCGAGGACACCATCAGAT....................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
droEre2
GGCCTATACTCCAACAACAACATCGAGGACACCATCAGATCCACAGTTCCGTAAGTT--G--TCACCCA---GA-AA----CGTACCA-TCTGGAAA---CTCTTA-T--------------------------------------------------GCTTAG---CTCGA---TACAA-TGAAAAAAGAAAA---A---AA-----------------AAACACTAATATTT-----GAAC--------T-TT---------GGA---ATACGCT-TG---TCA---AATTGAAT-T--------T--------------------A----------------TA-AGCCTATG-AATTACGCTACAT--ATTC--TTTGGATTTTG------CAATTTA-TGAATAAA---------CCTGCGTASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.......................................................................................A-TCTGGAAA---CTCTTA-T--------------------------------------------------GCTTAG---C....................................................................................................................................................................................................................................................................2311.0010000100
.......................CGAGGACACCATCAGATCCACAGTTCC..........................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
................ACAACATCGAGGACACCATCAGATCCACA...............................................................................................................................................................................................................................................................................................................................................................................................2911.0011000000
.......................CGAGGACACCATCAGATC...................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000
...........................................................................................................................................................................................................................................................................................................................................................................................TTGGATTTTG------CAATTTA-TGAATAAA---------C.......2611.0010000100
.....ATACTCCAACAACAACATCG...................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
............AACAACAACATCGAGGACACC...........................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
........................................................................................................................................................................................................................................TT-----GAAC--------T-TT---------GGA---ATACGCT-TG---TCA---...........................................................................................................................................2411.0011000000
................ACAACATCGAGGACACCATCAGAT....................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
............................................................................................GGAAA---CTCTTA-T--------------------------------------------------GCTTAG---CTCGA---TACA.........................................................................................................................................................................................................................................................2711.0011000000
...............................................................................................................................................................................................................................................................................................................................................................................CAT--ATTC--TTTGGATTTTG------CAAT.............................2211.0011000000
......................................................................................................................................................................................................................................ATTT-----GAAC--------T-TT---------GGA---ATACGCT-TG---TCA---...........................................................................................................................................2611.0010000010
......................TCGAGGACACCATCAGATCCACAGTTCCC.........................................................................................................................................................................................................................................................................................................................................................................................2911.0011000000
..................................................................................................................................................................AG---CTCGA---TACAA-TGAAAAAAGAA............................................................................................................................................................................................................................................2311.0010000010
................................................................................................................................................................................................................................................AAC--------T-TT---------GGA---ATACGCT-TG---TCA---AATT.......................................................................................................................................2511.0011000000
........................................................................................................................................................................................................................................................................GGA---ATACGCT-TG---TCA---AATTGAAT-T--------T--------------------A----------------TA-................................................................................2811.0011000000
...CTATACTCCAACAACAACATCGAGG................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000010
...CTATACTCCAACAACAACATC....................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001000
........................................................................................................................................................................................................................................................................................................................................................................TACGCTACAT--ATTC--TTTGGATT..........................................2211.0011000000
............................................................................................................................................................................................................................................................................................................................................................................................................AATTTA-TGAATAAA---------CCTGC...1911.0011000000
..................AACATCGAGGACACCATCAGATCCA.................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
....................................................................................................CTCTTA-T--------------------------------------------------GCTTAG---CTCGA---TAC..........................................................................................................................................................................................................................................................2111.0010000100
...................ACATCGAGGACACCATCAGATCCA.................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
...............AACAACATCGAGGACACCATCA.......................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010000
.............ACAACAACATCGAGGACACCATC........................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100
.......................................................................................................TTA-T--------------------------------------------------GCTTAG---CTCGA---TACA.........................................................................................................................................................................................................................................................1911.0011000000
............AACAACAACATCGAGGACACCATCA.......................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000100
........................................................................GA-AA----CGTACCA-TCTGGAAA---CTCTTA-T--------------------------------------------------GCT...........................................................................................................................................................................................................................................................................2911.0011000000
...........CAACAACAACATCGAGGA...............................................................................................................................................................................................................................................................................................................................................................................................................1820.5011000000

Generated: 05/18/2015 at 06:42 AM