dps_3383

Name	Class	Family	Strand
(TCG)n	Simple_repeat	Simple_repeat	+
(CAT)n	Simple_repeat	Simple_repeat	+
(CAT)n	Simple_repeat	Simple_repeat	+

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ACAGGCCCACATTCAAGAGCATACACCATGCGCTGGAGCATATGTTTCAGGTGGGTGACGTCGAGGTGTGGGATGATGATTATGCAGATGATGATGATGATTATGAAGATGAAGCCGAAGGCGAAGAGGAGCAGAACAATGTCCATTACGATCAAGATGAAGACAATGACGATGATGATGATGATGATGATGAGAGCAACTACGATGGCGACGATGACGATGATCATCCTCGTCGGCACAGGAGCCACCGC ************************************************...(((..((((...(((....((.((.(((((....))))).)).))...)))...))))..)))....((........)).......(((((((((..((((..((...................))..))))..))))).)).))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M040 female body	V112 male body
...................................................................................................................................................................................GATGATGATGATGAGAGCAA....................................................	20	0	1	1.00	1	1	0
...............................................................................................................................................................................................GAGAGCAACTACGATGGC..........................................	18	0	1	1.00	1	1	0
.........................CCATGCGCTGGAGGATGTGTC.............................................................................................................................................................................................................	21	3	4	0.25	1	0	1
......................................................................................................................................................................................GATGATGTAGAGAGCAAC...................................................	18	2	5	0.20	1	1	0
..............................CGGTGGAGCATGTGTTTTA..........................................................................................................................................................................................................	19	3	20	0.05	1	1	0
................................................................................................................................................................................GATGTTGATGATTATGAGA........................................................	19	2	20	0.05	1	1	0

TGTCCGGGTGTAAGTTCTCGTATGTGGTACGCGACCTCGTATACAAAGTCCACCCACTGCAGCTCCACACCCTACTACTAATACGTCTACTACTACTACTAATACTTCTACTTCGGCTTCCGCTTCTCCTCGTCTTGTTACAGGTAATGCTAGTTCTACTTCTGTTACTGCTACTACTACTACTACTACTACTCTCGTTGATGCTACCGCTGCTACTGCTACTAGTAGGAGCAGCCGTGTCCTCGGTGGCG ************************************************...(((..((((...(((....((.((.(((((....))))).)).))...)))...))))..)))....((........)).......(((((((((..((((..((...................))..))))..))))).)).))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M040 female body	GSM444067 head	SRR902010 ovaries
....................................................................................................................................................................................CACCACTAATACTCTCGTTGA..................................................	21	3	2	0.50	1	1	0	0
...............TCTCGTATGTGGTACAAGAAC.......................................................................................................................................................................................................................	21	3	3	0.33	1	0	1	0
.........................GGAACGCGACCTCGTACAC...............................................................................................................................................................................................................	19	2	3	0.33	1	1	0	0
.....................................................................................................................................................................................................................................AGCGGGCGTGTCCTCGGTGC..	20	3	11	0.09	1	1	0	0
...........................................................................................................................................................................................................CTACCGCTGCTATTG.................................	15	1	19	0.05	1	0	0	1
....................................................................................................AAAAATTCTACTTCGGCTTT...................................................................................................................................	20	3	20	0.05	1	1	0	0
....................................................................................................................................................................................................................................CAGCGGGCGTGTCCTCGGT....	19	3	20	0.05	1	1	0	0

Species	Coordinate	ID	Alignment
dp5	XR_group8:8480544-8480794 -	dps_3383	AC-AGGCCCACATTCAAGAGCATACACCATGCGCTGGAGCATATGTTTCAGGTGGGTGACG---------------------------TCGAGGTGTGGGATGATGA---TTATG---CAGATGAT---------GATGAT---------------------GATTATGAAGATGA----A------GCCGAAG----------GCGAAGAGGAGCAGAACAATGTCCATTACGATCAAGA-TGA-AGACAATGACGATGAT---GATGATGATGATGATGAGAGCAACTACGATGGCGACGATGACG-ATGATCATCC--------------------------------------------------------TC---------------------------GT-CGGCACAGGAGC---CACCG------C-----------------
droPer2	scaffold_40:688336-688598 -	dpe_1650	AC-AGGCCCACATTCAAGAGCATACACCATGCGCTGGAGCATATGTTTCAGGTGGGTGACG---------------------------TCGAGGTGTGGGATGATGA---TTATG---CAGATGAT---------GATGAT---------------------GATTATGAAGATGA----AGATGAAGGCGAAG----------GCGAAGAGGAGCAGAACAATGTCCATTACGATCAAGAATGAAAGACAATGACGATGATGATGATGATGATGATGATGAGAGCAACTACGATGGCGACGATGACGCATGATCATCC--------------------------------------------------------TC---------------------------GT-CGGCACAGGAGC---CACCG------C-----------------
droWil2	scf2_1100000004540:239524-239850 +	dwi_1395	AT-AGGCCCACATTTAAGAGCATTCATCATGCTCTGGAGCATATGTTTCAGGTGGGTGGTG---ACGGTGAGCACATCCAGGTGGAGGTTGAGGTTTGGGATGATGA---TGATA---ATGATGAT---------AATAAT---------------------GATGATGATGATGA----T----------------------------------GATGAGAATGATTATGATTA---CGA-CGA-T------------GATGATTATGATATTGATGATGATTATGAAGCTGATGGCGACGATGATG-ACGATCATAATAATA--GATTAACTAAAAATAATACAAATAAAAGTAATAATAATAGAAATGGGCGACAACAGAATACAATGGGCAACAAGCACCACCCGTTACAGCATC---CGCCG------C-----------------
droVir3	scaffold_13049:3703014-3703184 -		AT-CGGCCCACGTTCAAGAGCATACACCATGCGCTGGAGCACATGTTTCAGGTGGGTGACGGTGA---------------TGTCGAATTCGAGGTGTGGGATGATGA---TGATG---ATGATGAT---------GATGATGACGTCGAT---GATATCGATGATGATTA--------------------------------------------------------------------CGA-TGG-CGACAAT---------------------------------GACGACAATGATGACGACAATG-----------------------------------------------------------------------------------------------------------------------------------------------
droMoj3	scaffold_6473:7824419-7824633 +		AGGCGGGCCAAGTTCAA------ATTCCATAAGATCCAGCGAAT---------GGATGATG---------------------------ATGATGATGAGAATGAGGA---TGAGG---ATGATGAT---------GATGAT---------------------GACGATGACGATGCTGCT--------------GGGAATGCTGATGACGATGATGAAGATAATGAGAATGATGA-----------------------------------------------------TAACGATGATGATAATGATA-ATGAA---AA--------------------------------------------------------CG---------------------------AT-AATGACAATGAG---AAGAACGATGATGATGAAGATGAAGATGA
droGri2	scaffold_15110:10972978-10973142 +		AT-CGGCCCACATTCAAGAGCATACACCATGCGCTGGAGCACATGTTTCAGGTGGGTGACGGTGACGGTGTCGGTGTCGGTGTCGATTTCGAGGTGTGGGACGATGA------TG---TCGATGAT---------ATCGAT---------------------GATGATTACGATGG----------------------------------------------------------------------CGACAAT---------------------------------GACGACAATGACGACGACAATG-----------------------------------------------------------------------------------------------------------------------------------------------
droAna3	scaffold_13337:13974029-13974211 +		AC-AGGCCCACGTTCAAGAGTATACACCATGCGCTGGAGCATATGTTTCAGGTGGGTGATG---------------------------TCGAGGTGTGGGACGATGA---ATACT---ATGATGATGAT------GATGAT---------------------GATCATGGT-----------------------CCTGATCCTG--------------------------------------------------------------ATCCTGATGATGAGGCGAGTGACTACGATGGCGACGACGACG-ACGAC---AT--------------------------------------------------------CA---------------------------TC-CAG--------C---AACAG------T-----------------
droBip1	scf7180000395832:915239-915437 +		AT-AGGCCCACGTTCAAGAGCATACACCATGCGCTGGAGCACATGTTTCAGGTGGGTGACG---------------------------TCGAGGTGTGGGACGATGA---ATACT---ATGATGAT---------GATGAT---------------------GATGATGATGATCATGGT--------------CCCGATCCCG--------------------------------------------------------------ATCACGACGATGAGGCGAGTGACTACGATGGCGACGACGACG-ACGAC---CC--------------------------------------------------------TC---------------------------AT-CAGCAC-TCGGCAGCCATAG------A-----------------
droKik1	scf7180000302577:988554-988744 -		AC-AGGCCCACATTCAAGAGCATACACCATGCGCTGGAGCACATGTTTCAGGTGGGTGACG---------------------------TCGAGGTGTGGGACGATGA---ATATG---ATGACGAT---------GACGATGATGAA---------------GATCATGACGAT--------------------------CGCG------------------------------------A-C----------------------GACGGTGGCGAGGAGGCGAGTGACTACGACGGCGACGACGACG-ACGAG---CA--------------------------------------------------------TC---------------------------AG-CAGAACAACAAC---AGC--------------------------
droFic1	scf7180000453839:2007421-2007665 -		AT-AGGCCCACGTTCAAGAGCATACACCATGCGCTGGAGCACATGTTTCAGGTGGGTGACG---------------------------TCGAGGTGTGGGATGATGA---TGATGATTATGATGATGACGATGACGACGAT------------GATCACGATGAGGATCACGACGAT-----------------------CGCG------------------------------------A-C----------------GATGCTGGCGATGGCGATGAGGCGAGTGACTACGATGGCGACGATGATG-ATGAGCAGGATCTCAACGATCAGCT-------------------GCAGCA----------------GC---------------------------AG-CAGAACAGCGGC---AGCGTCCA---T-----------------
droEle1	scf7180000491255:3047897-3048099 -		AC-CGGCCCACGTTCAAGAGCATACACCATGCGCTGGAGCACATGTTTCAGGTGGGTGACG---------------------------TCGAGGTGTGGGACGATGA---ATATG---ACGATGAT---------AACGATGATAAC---GAT---------GATCACGACGATGC----------------------------------------------------------------------------------------------TGGCGAGGAGGCGAGTGACTACGACGGCGACGACGACG-ACGAA---CT--------------------------------------------------------GC---------------------------AG-CAGAACAGCGGC---AGCATCCACAGCCATGTCCAT--------
droRho1	scf7180000779409:49656-49840 +		AC-CGGCCCACGTTCAAGAGCATACACCATGCGCTGGAGCACATGTTTCAGGTGGGTGACG---------------------------TCGAGGTGTGGGACGATGA---ATATG---ACGATGAT---------AACGAA---------------------GATCATGACGATGC----------------------------------------------------------------------------------------------TGGCGAGGAGGCGAGTGACTACGACGGCGACGACGACG-ACGAG---CT--------------------------------------------------------CC---------------------------AG-CAGAACAGCGGC---AGCATTCACAGC-----------------
droBia1	scf7180000302428:3497025-3497200 +		AC-CGGCCCACGTTCAAGAGCATACACCATGCGCTGGAGCACATGTTTCAGGTGGGTGACG---------------------------TCGAGGTGTGGGACGATGA---ATATG---ACGATGAT---------AACGAA---------------------GATCATGACGATGC----------------------------------------------------------------------------------------------TGGCGAGGAGGCGAGTGACTACGACGGCGACGACGACG-ACGAG---CT--------------------------------------------------------CC---------------------------AG-CAGAACAGCGGC---AGC--------------------------
droTak1	scf7180000415352:755322-755515 +		AC-AGGCCCACGTTCAAGAGCATACACCATGCGCTGGAGCACATGTTTCAGGTGGGTGACG---------------------------TCGAGGTGTGGGATGACGATGAATATG---ACGATG------------ACGAAGATCAC---GAG---------GATCACGACGATGC----------------------------------------------------------------------------------------------TGGCGAGGAGGCGAGTGACTACGACGGCGACGACGACG-ACGAGCAGCT--------------------------------------------------------AC---------------------------AG-CAGAACAGCGGC---AGCGTCCA---C-----------------
droEug1	scf7180000409711:722891-723072 +		AC-CGGCCCACGTTCAAGAGCATACACCATGCGCTGGAGCACATGTTTCAGGTGGGTGACG---------------------------TCGAGGTGTGGGACGATGA---ATATG---ATGATGAT---------AACGAA---------------------GATCATGACGATGA----------------------------------------------------------------------------------------------TGGCGAGGAGGCGAGTGACTACGACGGCGACGACGACG-ACGAG---CT--------------------------------------------------------CC---------------------------AG-CAGAACAACGGC---AGCATACA---C-----------------
dm3	chr3L:16620473-16620651 -		AC-AGGCCCACGTTCAAGAGCATACACCATGCGCTGGAGCACATGTTTCAGGTGGGTGACG---------------------------TCGAGGTGTGGGACGATGA---ATATG---ACGATGAT---------AACGAT---------------------GATCATGACGATGC----------------------------------------------------------------------------------------------TGGCGAGGAGGCGAGTGACTACGACGGCGACGACGACG-ACGAG---CT--------------------------------------------------------CC---------------------------AT-CAGAACAGCGGC---AGCAT------C-----------------
droSim2	3l:16215787-16215965 -		AC-AGGCCCACGTTCAAGAGCATACACCATGCGCTGGAGCACATGTTTCAGGTGGGTGACG---------------------------TCGAGGTGTGGGACGATGA---ATATG---ACGATGAT---------AACGAT---------------------GATCATGACGATGC----------------------------------------------------------------------------------------------TGGCGAGGAGGCGAGTGACTACGACGGCGACGACGACG-ACGAG---CT--------------------------------------------------------CC---------------------------AC-CAGAACAGCGGC---AGCAT------C-----------------
droSec2	scaffold_0:8698327-8698505 -		AC-AGGCCCACGTTCAAGAGCATACACCATGCGCTGGAGCACATGTTTCAGGTGGGTGACG---------------------------TCGAGGTGTGGGACGATGA---ATATG---ACGATGAT---------AACGAT---------------------GATCATGACGATGC----------------------------------------------------------------------------------------------TGGCGAGGAGGCGAGTGACTACGACGGCGACGACGACG-ACGAG---CT--------------------------------------------------------CC---------------------------AC-CAGAACAGCGGC---AGCAT------C-----------------
droYak3	3L:17450283-17450461 +		AC-AGGCCCACGTTCAAGAGCATACACCATGCGCTGGAGCACATGTTTCAGGTGGGTGACG---------------------------TCGAGGTGTGGGACGATGA---ATATG---ACGATGAT---------CACGAT---------------------GATCATGACGATGC----------------------------------------------------------------------------------------------TGGCGAGGAGGCGAGTGACTACGACGGCGACGACGACG-ACGAG---CT--------------------------------------------------------CC---------------------------AC-CAGAACAGCGGC---AGCAT------C-----------------
droEre2	scaffold_4784:17207750-17207928 +		AC-AGGCCCACGTTCAAGAGCATACACCATGCGCTGGAGCACATGTTTCAGGTGGGTGACG---------------------------TCGAGGTGTGGGACGATGA---ATATG---ACGATGAT---------AACGAA---------------------GATCGTGACGATGC----------------------------------------------------------------------------------------------TGGCGAGGAGGCGAGTGACTACGACGGCGACGACGACG-ACGAG---CT--------------------------------------------------------CC---------------------------AC-CAGAACAGCGGC---AGCAT------C-----------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

dp5

AC-AGGCCCACATTCAAGAGCATACACCATGCGCTGGAGCATATGTTTCAGGTGGGTGACG---------------------------TCGAGGTGTGGGATGATGA---TTATG---CAGATGAT---------GATGAT---------------------GATTATGAAGATGA----A------GCCGAAG----------GCGAAGAGGAGCAGAACAATGTCCATTACGATCAAGA-TGA-AGACAATGACGATGAT---GATGATGATGATGATGAGAGCAACTACGATGGCGACGATGACG-ATGATCATCC--------------------------------------------------------TC---------------------------GT-CGGCACAGGAGC---CACCG------C-----------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
............................................................................................................................................................................................................................................................................GATGATGATGATGAGAGCAA...................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................GAGAGCAACTACGATGGC.........................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

AC-AGGCCCACATTCAAGAGCATACACCATGCGCTGGAGCATATGTTTCAGGTGGGTGACG---------------------------TCGAGGTGTGGGATGATGA---TTATG---CAGATGAT---------GATGAT---------------------GATTATGAAGATGA----AGATGAAGGCGAAG----------GCGAAGAGGAGCAGAACAATGTCCATTACGATCAAGAATGAAAGACAATGACGATGATGATGATGATGATGATGATGAGAGCAACTACGATGGCGACGATGACGCATGATCATCC--------------------------------------------------------TC---------------------------GT-CGGCACAGGAGC---CACCG------C-----------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
......................................................................................................................................................................ATGAAGATGA----AGATGAAGGC.....................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................GATGATGATGATGATGATGAG........................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1
.........................................................................................................................................................................................................................................................................GATGATGATGATGATGAG........................................................................................................................................................................	18	20	0.05	1	0	0	1	0	0	0
.........................................................................................................................ATGAT---------GATGAT---------------------GATTATG..........................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	1	0	0	0

droWil2

AT-AGGCCCACATTTAAGAGCATTCATCATGCTCTGGAGCATATGTTTCAGGTGGGTGGTG---ACGGTGAGCACATCCAGGTGGAGGTTGAGGTTTGGGATGATGA---TGATA---ATGATGAT---------AATAAT---------------------GATGATGATGATGA----T----------------------------------GATGAGAATGATTATGATTA---CGA-CGA-T------------GATGATTATGATATTGATGATGATTATGAAGCTGATGGCGACGATGATG-ACGATCATAATAATA--GATTAACTAAAAATAATACAAATAAAAGTAATAATAATAGAAATGGGCGACAACAGAATACAATGGGCAACAAGCACCACCCGTTACAGCATC---CGCCG------C-----------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...............................................................................................................................................................................................................................................GA-CGA-T------------GATGATTATGATA...................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................ATTGATGATGATTATGAAGCTGATGG..........................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
................................................CAGGTGGGTGGTG---ACGGTGA............................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1
.......................................................................................................................................................................................................................GATGAGAATGATTATGATTA---CGA-CGA-T------------................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0
...............................................................................................................................................................................................................................................GA-CGA-T------------GATGATTATGATATTGATG.............................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0
......................................................................................................GATGA---TGATA---ATGATGAT---------............................................................................................................................................................................................................................................................................................................................	18	20	0.30	6	0	0	0	6	0
...........................................................................................................................GAT---------AATAAT---------------------GATGATGATGAT.....................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	2	0
...................................................................................................GATGATGA---TGATA---ATGAT........................................................................................................................................................................................................................................................................................................................................	18	20	0.10	2	0	0	0	2	0
........................................................................................................................................ATAAT---------------------GATGATGATGATGA----T----------------------------------............................................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	2	0
......................................................................................................................................................................ATGATGATGA----T----------------------------------GATGAGA.....................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	1	0
...........................................................................................................................................AT---------------------GATGATGATGATGA----T----------------------------------GATGAG......................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	1	0

droVir3

AT-CGGCCCACGTTCAAGAGCATACACCATGCGCTGGAGCACATGTTTCAGGTGGGTGACGGTGA---------------TGTCGAATTCGAGGTGTGGGATGATGA---TGATG---ATGATGAT---------GATGATGACGTCGAT---GATATCGATGATGATTA--------------------------------------------------------------------CGA-TGG-CGACAAT---------------------------------GACGACAATGATGACGACAATG-----------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...........................................................................................................................GAT---------GATGATGACGTCGAT---GATATCGA..................................................................................................................................................................................................................................................................................................	26	1	4.00	4	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................GAT---------GATGATGACGTCGAT---GATATCG...................................................................................................................................................................................................................................................................................................	25	1	3.00	3	0	0	0	0	0	1	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................GAT---------GATGATGACGTCGAT---GATATCGAA.................................................................................................................................................................................................................................................................................................	27	1	3.00	3	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................GAT---------GATGATGACGTCGAT---GA........................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................GATGATGATTA--------------------------------------------------------------------CGA-TGG-CGACAAT---------------------------------GACGACAATGATGACGACAA.................................................................................................................................................	44	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.............TCAAGAGCATACACCATGCGC.................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................GATGATGACGTCGAT---GATATCGATGA...............................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................GATGAT---------GATGATGACGTCGAT---GATATCGATGATGAT...........................................................................................................................................................................................................................................................................................	36	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................GAT---------GATGATGACGTCGAT---GATA......................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................GATGAT---------GATGATGACGTCGAT---GATATCGATG................................................................................................................................................................................................................................................................................................	31	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................G---ATGATGAT---------GATGATGACGTCGA..............................................................................................................................................................................................................................................................................................................	23	2	1.00	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................GAT---------GATGATGACGTCGAT---GATATCGAT.................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................G---ATGATGAT---------GATGATGACGTCGAT---GATATCGAA.................................................................................................................................................................................................................................................................................................	33	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................GAT---------GATGATGACGTCGAT---GATATCGATG................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................GAT---------GATGATGACGTCGAT---GATAA.....................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................GAT---------GATGATGACGTCGAT---GATAT.....................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.........................................................................................................................ATGAT---------GATGATGACGTCGA..............................................................................................................................................................................................................................................................................................................	19	3	0.67	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................G---ATGATGAT---------GATGATGACGTCG...............................................................................................................................................................................................................................................................................................................	22	3	0.67	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................TGATGA---TGATG---ATGATGAT---------GA..........................................................................................................................................................................................................................................................................................................................	21	20	0.55	11	0	0	0	0	0	0	0	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................TGATG---ATGATGAT---------GATGATG.....................................................................................................................................................................................................................................................................................................................	20	20	0.45	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................TGATG---ATGATGAT---------GATGATGA....................................................................................................................................................................................................................................................................................................................	21	20	0.25	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................TGATGA---TGATG---ATGATGAT---------............................................................................................................................................................................................................................................................................................................................	19	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................TGATG---ATGATGAT---------GATGA.......................................................................................................................................................................................................................................................................................................................	18	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................TGATGA---TGATG---ATGATGAT---------G...........................................................................................................................................................................................................................................................................................................................	20	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................GA---TGATG---ATGATGAT---------GAT.........................................................................................................................................................................................................................................................................................................................	18	20	0.15	3	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................GATGA---TGATG---ATGATGAT---------GATGAT......................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................G---ATGATGAT---------GATGATGACG..................................................................................................................................................................................................................................................................................................................	19	20	0.10	2	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................G---ATGATGAT---------GATGATGACGT.................................................................................................................................................................................................................................................................................................................	20	13	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..............................................................................................................TGATG---ATGATGAT---------GATGATGAC...................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................GATGATGA---TGATG---ATGATGAT---------GATGAT......................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................GATGA---TGATG---ATGATGAT---------GA..........................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................GGATGATGA---TGATG---ATGATGAT---------............................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................ATGA---TGATG---ATGATGAT---------GATGA.......................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................GATG---ATGATGAT---------GATGATGACG..................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................ATG---ATGATGAT---------GATGATGAC...................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................GA---TGATG---ATGATGAT---------GATGAT......................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AGGCGGGCCAAGTTCAA------ATTCCATAAGATCCAGCGAAT---------GGATGATG---------------------------ATGATGATGAGAATGAGGA---TGAGG---ATGATGAT---------GATGAT---------------------GACGATGACGATGCTGCT--------------GGGAATGCTGATGACGATGATGAAGATAATGAGAATGATGA-----------------------------------------------------TAACGATGATGATAATGATA-ATGAA---AA--------------------------------------------------------CG---------------------------AT-AATGACAATGAG---AAGAACGATGATGATGAAGATGAAGATGA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..................................................................................................................G---ATGATGAT---------GATGAT---------------------GACGATG..........................................................................................................................................................................................................................................................................................	22	20	0.30	6	0	0	0	3	0	3
......................................................................................................................................................................................................................................GATGA-----------------------------------------------------TAACGATGATGAT......................................................................................................................................................	18	7	0.14	1	1	0	0	0	0	0
.......................................................................................................................TGATGAT---------GATGAT---------------------GACGATG..........................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0

droGri2

AT-CGGCCCACATTCAAGAGCATACACCATGCGCTGGAGCACATGTTTCAGGTGGGTGACGGTGACGGTGTCGGTGTCGGTGTCGATTTCGAGGTGTGGGACGATGA------TG---TCGATGAT---------ATCGAT---------------------GATGATTACGATGG----------------------------------------------------------------------CGACAAT---------------------------------GACGACAATGACGACGACAATG-----------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droAna3

AC-AGGCCCACGTTCAAGAGTATACACCATGCGCTGGAGCATATGTTTCAGGTGGGTGATG---------------------------TCGAGGTGTGGGACGATGA---ATACT---ATGATGATGAT------GATGAT---------------------GATCATGGT-----------------------CCTGATCCTG--------------------------------------------------------------ATCCTGATGATGAGGCGAGTGACTACGATGGCGACGACGACG-ACGAC---AT--------------------------------------------------------CA---------------------------TC-CAG--------C---AACAG------T-----------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...........................................................................................................................GATGAT------GATGAT---------------------GATCATGGT-----------------------CCTGATC..........................................................................................................................................................................................................................................................	28	1	3.00	3	2	1	0	0	0	0
............................................................................................................................................................................................................................................................................CCTGATGATGAGGCGAGT.....................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
...................................................GTGGGTGATG---------------------------TCGAGGTGTG.................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................GATGAT------GATGAT---------------------GATCATGGT-----------------------CCTGATCC.........................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0
....GGCCCACGTTCAAGAGTATACACCA......................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................................................................................................................................................................TCCTGATGATGAGGCGAGTGA...................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0
..........................................................................................................................................GAT---------------------GATCATGGT-----------------------CCTGATCCTG--------------------------------------------------------------ATC......................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................TG--------------------------------------------------------------ATCCTGATGATGAGGCGAGT.....................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
..................................................................................................................T---ATGATGATGAT------GATGAT---------------------GAT..............................................................................................................................................................................................................................................................................................	21	14	0.07	1	0	0	0	0	0	1

droBip1

AT-AGGCCCACGTTCAAGAGCATACACCATGCGCTGGAGCACATGTTTCAGGTGGGTGACG---------------------------TCGAGGTGTGGGACGATGA---ATACT---ATGATGAT---------GATGAT---------------------GATGATGATGATCATGGT--------------CCCGATCCCG--------------------------------------------------------------ATCACGACGATGAGGCGAGTGACTACGATGGCGACGACGACG-ACGAC---CC--------------------------------------------------------TC---------------------------AT-CAGCAC-TCGGCAGCCATAG------A-----------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AC-AGGCCCACATTCAAGAGCATACACCATGCGCTGGAGCACATGTTTCAGGTGGGTGACG---------------------------TCGAGGTGTGGGACGATGA---ATATG---ATGACGAT---------GACGATGATGAA---------------GATCATGACGAT--------------------------CGCG------------------------------------A-C----------------------GACGGTGGCGAGGAGGCGAGTGACTACGACGGCGACGACGACG-ACGAG---CA--------------------------------------------------------TC---------------------------AG-CAGAACAACAAC---AGC--------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AT-AGGCCCACGTTCAAGAGCATACACCATGCGCTGGAGCACATGTTTCAGGTGGGTGACG---------------------------TCGAGGTGTGGGATGATGA---TGATGATTATGATGATGACGATGACGACGAT------------GATCACGATGAGGATCACGACGAT-----------------------CGCG------------------------------------A-C----------------GATGCTGGCGATGGCGATGAGGCGAGTGACTACGATGGCGACGATGATG-ATGAGCAGGATCTCAACGATCAGCT-------------------GCAGCA----------------GC---------------------------AG-CAGAACAGCGGC---AGCGTCCA---T-----------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AC-CGGCCCACGTTCAAGAGCATACACCATGCGCTGGAGCACATGTTTCAGGTGGGTGACG---------------------------TCGAGGTGTGGGACGATGA---ATATG---ACGATGAT---------AACGATGATAAC---GAT---------GATCACGACGATGC----------------------------------------------------------------------------------------------TGGCGAGGAGGCGAGTGACTACGACGGCGACGACGACG-ACGAA---CT--------------------------------------------------------GC---------------------------AG-CAGAACAGCGGC---AGCATCCACAGCCATGTCCAT--------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AC-CGGCCCACGTTCAAGAGCATACACCATGCGCTGGAGCACATGTTTCAGGTGGGTGACG---------------------------TCGAGGTGTGGGACGATGA---ATATG---ACGATGAT---------AACGAA---------------------GATCATGACGATGC----------------------------------------------------------------------------------------------TGGCGAGGAGGCGAGTGACTACGACGGCGACGACGACG-ACGAG---CT--------------------------------------------------------CC---------------------------AG-CAGAACAGCGGC---AGCATTCACAGC-----------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AC-CGGCCCACGTTCAAGAGCATACACCATGCGCTGGAGCACATGTTTCAGGTGGGTGACG---------------------------TCGAGGTGTGGGACGATGA---ATATG---ACGATGAT---------AACGAA---------------------GATCATGACGATGC----------------------------------------------------------------------------------------------TGGCGAGGAGGCGAGTGACTACGACGGCGACGACGACG-ACGAG---CT--------------------------------------------------------CC---------------------------AG-CAGAACAGCGGC---AGC--------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AC-AGGCCCACGTTCAAGAGCATACACCATGCGCTGGAGCACATGTTTCAGGTGGGTGACG---------------------------TCGAGGTGTGGGATGACGATGAATATG---ACGATG------------ACGAAGATCAC---GAG---------GATCACGACGATGC----------------------------------------------------------------------------------------------TGGCGAGGAGGCGAGTGACTACGACGGCGACGACGACG-ACGAGCAGCT--------------------------------------------------------AC---------------------------AG-CAGAACAGCGGC---AGCGTCCA---C-----------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

AC-CGGCCCACGTTCAAGAGCATACACCATGCGCTGGAGCACATGTTTCAGGTGGGTGACG---------------------------TCGAGGTGTGGGACGATGA---ATATG---ATGATGAT---------AACGAA---------------------GATCATGACGATGA----------------------------------------------------------------------------------------------TGGCGAGGAGGCGAGTGACTACGACGGCGACGACGACG-ACGAG---CT--------------------------------------------------------CC---------------------------AG-CAGAACAACGGC---AGCATACA---C-----------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

AC-AGGCCCACGTTCAAGAGCATACACCATGCGCTGGAGCACATGTTTCAGGTGGGTGACG---------------------------TCGAGGTGTGGGACGATGA---ATATG---ACGATGAT---------AACGAT---------------------GATCATGACGATGC----------------------------------------------------------------------------------------------TGGCGAGGAGGCGAGTGACTACGACGGCGACGACGACG-ACGAG---CT--------------------------------------------------------CC---------------------------AT-CAGAACAGCGGC---AGCAT------C-----------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
....GGCCCACGTTCAAGAGCATACACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................CGATGAT---------AACGAT---------------------GATCATGACG.......................................................................................................................................................................................................................................................................................	23	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................CTGGAGCACATGTTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................GTGGGTGACG---------------------------TCGAGGTGTGGGACG............................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........ACGTTCAAGAGCATACACCATGCGCT................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................ACGAG---CT--------------------------------------------------------CC---------------------------AT-CAGAACAGCGGC---AGCA.........................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................CGAG---CT--------------------------------------------------------CC---------------------------AT-CAGAACAGCGGC---A............................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................GTGGGTGACG---------------------------TCGAGGTG...................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................CGAGTGACTACGACGGCGAC......................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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......................................................................................................................................................................................................................................................................................................................CGAG---CT--------------------------------------------------------CC---------------------------AT-CAGAACAGCGGC---AGCA.........................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AC-AGGCCCACGTTCAAGAGCATAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................GTGGGTGACG---------------------------TCGAGGTGTGG................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................TGC----------------------------------------------------------------------------------------------TGGCGAGGAGGCGAGTGACT.................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................GGCGACGACGACG-ACGAG---CT--------------------------------------------------------CC---------------------------C..............................................	23	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................GTGGGACGATGA---ATATG---GT...........................................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

AC-AGGCCCACGTTCAAGAGCATACACCATGCGCTGGAGCACATGTTTCAGGTGGGTGACG---------------------------TCGAGGTGTGGGACGATGA---ATATG---ACGATGAT---------AACGAT---------------------GATCATGACGATGC----------------------------------------------------------------------------------------------TGGCGAGGAGGCGAGTGACTACGACGGCGACGACGACG-ACGAG---CT--------------------------------------------------------CC---------------------------AC-CAGAACAGCGGC---AGCAT------C-----------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...........................................................................................AGGTGTGGGACGATGA---ATAT.................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................AACGAT---------------------GATCATGACGAT.....................................................................................................................................................................................................................................................................................	18	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

AC-AGGCCCACGTTCAAGAGCATACACCATGCGCTGGAGCACATGTTTCAGGTGGGTGACG---------------------------TCGAGGTGTGGGACGATGA---ATATG---ACGATGAT---------AACGAT---------------------GATCATGACGATGC----------------------------------------------------------------------------------------------TGGCGAGGAGGCGAGTGACTACGACGGCGACGACGACG-ACGAG---CT--------------------------------------------------------CC---------------------------AC-CAGAACAGCGGC---AGCAT------C-----------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
......................................................................................................................................................................................................................................................................................................................CGAG---CT--------------------------------------------------------CC---------------------------AC-CAGAACAGCGGC---AGC..........................	25	1	1.00	1	0	0	1	0
..........................................................................................................................................GAT---------------------GATCATGACGATGC----------------------------------------------------------------------------------------------TGGCGAGGA............................................................................................................................................................................	26	1	1.00	1	0	1	0	0
.................GAGCATACACCATGCGCTGGAGCACA........................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0
................................................CAGGTGGGTGACG---------------------------TCGAGGG....................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0

droYak3

AC-AGGCCCACGTTCAAGAGCATACACCATGCGCTGGAGCACATGTTTCAGGTGGGTGACG---------------------------TCGAGGTGTGGGACGATGA---ATATG---ACGATGAT---------CACGAT---------------------GATCATGACGATGC----------------------------------------------------------------------------------------------TGGCGAGGAGGCGAGTGACTACGACGGCGACGACGACG-ACGAG---CT--------------------------------------------------------CC---------------------------AC-CAGAACAGCGGC---AGCAT------C-----------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.........................................CATGTTTCAGGTGGGTGACG---------------------------...........................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................GAT---------CACGAT---------------------GATCATGACGATGC----------------------------------------------------------------------------------------------T....................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................GC----------------------------------------------------------------------------------------------TGGCGAGGAGGCGAGTGAC..................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0

droEre2

AC-AGGCCCACGTTCAAGAGCATACACCATGCGCTGGAGCACATGTTTCAGGTGGGTGACG---------------------------TCGAGGTGTGGGACGATGA---ATATG---ACGATGAT---------AACGAA---------------------GATCGTGACGATGC----------------------------------------------------------------------------------------------TGGCGAGGAGGCGAGTGACTACGACGGCGACGACGACG-ACGAG---CT--------------------------------------------------------CC---------------------------AC-CAGAACAGCGGC---AGCAT------C-----------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

dps_3383

XR_group8:8480594-8480744 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-23.5	-23.0