ID:

dps_3374

 Coordinate:

XR_group8:8268259-8268409 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-11.6 -10.7 -10.6

Flybase annnotation

CDS [Dpse\GA28209-cds]; exon [dpse_GLEANR_7697:1]; intron [Dpse\GA28209-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TGCACTTCTGGGAGATGCGCGTCATCACAGCGCTGGCCGGCACAGATGTGGTGAGTCTTGAGAAGCATAATCCCAGATGCCCAGATCGCCTGGCCTGACAACTAGTTGGGTGAGATGAATGTCAGTCAAAGTCGCTGATAGGAAGGCCTCAAAATAGCACACTCTGGCTTCTGTTGGTCTCGCTCCACTCCACACCTCCACCCGTTTTGTGGATTACAGATTAAAATGCACAGCGCAGGGCGTTGATAAGA
*******************************************************************..............((..(((((((((..........)))))))))..))************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 GSM343916
embryo
 SRR902011
testis
 GSM444067
head
...................................................................TAATCCCAGATGCCCAGATCGC.................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0
................................................................................................GACAACTAGTTGGGTGAGATG...................................................................................................................................... 21 0 1 1.00 1 1 0 0 0
...................................................................................................AACTAGTTGGGTGAGATGAATGTCAG.............................................................................................................................. 26 0 1 1.00 1 0 0 0 1
...............................................................................................................................................................................................................................AAATGCACAGCGCAGGGCGTT....... 21 0 1 1.00 1 1 0 0 0
.................................................................................................................................................................................................................................ATGGACGGCGCAGGGCGTT....... 19 2 1 1.00 1 1 0 0 0
.....................................................................................................................................................CAAAATGGCACACTCTGGCTT................................................................................. 21 1 1 1.00 1 1 0 0 0
..................................................................................................................ATGAATGTCAGTCAAAGTCGC.................................................................................................................... 21 0 1 1.00 1 1 0 0 0
....................................................................................................................................................................TGGCTTCTGTTGGTCTCGCT................................................................... 20 0 1 1.00 1 1 0 0 0
.......................................................................................................................................................AAATAGCACACTCTGGCTTCT............................................................................... 21 0 1 1.00 1 1 0 0 0
......................................................................................................TAGTTGGGTGAGATGAATGTC................................................................................................................................ 21 0 1 1.00 1 1 0 0 0
.....................................................................................................CTAGTTGGGTGAGATGAATG.................................................................................................................................. 20 0 1 1.00 1 0 0 1 0
...................................................................TAATCCCAGATGCCCAGATT.................................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0
............................................................................................................................GTCAAAGTCGCTGATAGGAA........................................................................................................... 20 0 1 1.00 1 1 0 0 0
......................CATCACAGCGCTGGCCGGC.................................................................................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0
....................................................................................................ACTAGTTGGGTGAGATGAATGTCAGT............................................................................................................................. 26 0 1 1.00 1 0 1 0 0
.............................................................................................................................................................CACACTCTGGCTTCTGTTGG.......................................................................... 20 0 1 1.00 1 1 0 0 0
..............................................................................................................................................................ACACTCTGGCTTCTGTTGGTC........................................................................ 21 0 1 1.00 1 1 0 0 0
.................................................................................................................................GGTCGCTGATAGGAGGGCCTCT.................................................................................................... 22 3 2 0.50 1 1 0 0 0
...........................CTCCGCTGGCGGGCACAGATGTG......................................................................................................................................................................................................... 23 3 3 0.33 1 0 1 0 0
.....................................................................................................................................................................................................CCAAGCGTTTGGTGGATTAC.................................. 20 3 6 0.17 1 1 0 0 0
...................................................................................................TAATAGTTGGGTTAGATGA..................................................................................................................................... 19 3 15 0.07 1 0 1 0 0

Anti-sense strand reads

ACGTGAAGACCCTCTACGCGCAGTAGTGTCGCGACCGGCCGTGTCTACACCACTCAGAACTCTTCGTATTAGGGTCTACGGGTCTAGCGGACCGGACTGTTGATCAACCCACTCTACTTACAGTCAGTTTCAGCGACTATCCTTCCGGAGTTTTATCGTGTGAGACCGAAGACAACCAGAGCGAGGTGAGGTGTGGAGGTGGGCAAAACACCTAATGTCTAATTTTACGTGTCGCGTCCCGCAACTATTCT
**************************************************************************************************************************************..............((..(((((((((..........)))))))))..))******************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 M059
embryo
 SRR902012
CNS imaginal disc
 V112
male body		 GSM343916
embryo
...................................................................................CTAGCGGGCCGGACTGTTGGT................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0
.......................................................................................CGGGCCGGACTGTTGATCA................................................................................................................................................. 19 1 1 1.00 1 1 0 0 0 0
...TGAAGACCCTCTACGCGCAGT................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0
..........................................................................................................................................................................................TGAGGTGTGGAGGTGGGCAAA............................................ 21 0 1 1.00 1 0 1 0 0 0
..................................................................................................................................................................................GAGCGAGGTGAGGTGTGGAG..................................................... 20 0 1 1.00 1 1 0 0 0 0
..................................................................................................................................................................................CAGCGAGGTGAGGTGTGGA...................................................... 19 1 1 1.00 1 1 0 0 0 0
..............................................................................CGGGTCTAGCGGGCCGGACT......................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0
.CGTGAAGACCCTCTACGCGCA..................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0
.......................................................................................................................................................TTTATCGTGTGAGACCGAAGA............................................................................... 21 0 1 1.00 1 1 0 0 0 0
.......................................................AGGACTCTTGGTATTAGGCTC............................................................................................................................................................................... 21 3 1 1.00 1 1 0 0 0 0
.....................................................................................................................................................................................CGAGGTGAGGTGTGGAGGT................................................... 19 0 1 1.00 1 0 0 1 0 0
........................................................................................................CAACCCACTCTACTTGCGGT............................................................................................................................... 20 2 2 0.50 1 1 0 0 0 0
.....................................................................................................................................................................................CGACGTGAGGTTTGAAGGTGG................................................. 21 3 3 0.33 1 0 1 0 0 0
....................................................................................................................................................................................................................................GGGGCGCGTCCCGCAACTA.... 19 2 4 0.25 1 1 0 0 0 0
....................................................................TTGGGGTCTCCGGGTCTA..................................................................................................................................................................... 18 2 7 0.14 1 1 0 0 0 0
.......................................................................................................................................................................................TTGTGAGGTGTGGAGGTGG................................................. 19 2 10 0.10 1 1 0 0 0 0
.........................................................................................................................................................................................ATGAGGTGTGGAGATGGGTA.............................................. 20 3 11 0.09 1 1 0 0 0 0
.........................................................................................................................................................................................GTGAGGTGTGGAGGTGGATAG............................................. 21 3 17 0.06 1 1 0 0 0 0
........................................................................................................................................................................TCGACAACCAGAGCGAGGA................................................................ 19 3 20 0.05 1 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 XR_group8:8268209-8268459 - dps_3374 TGCACTTCTGGGAGATGCGCGTCATCACAGCGCTGGCCGGCACA-GATGTGGTGAGTCTT-------------GAG--------AAGCA--TAATCCCAG---ATGCCCAGATCGCCTGGC-CT-------GACAACTAGTT-------GGG--------------------T----GAGATGAATGTCAGTCAAAGTCGCTGATAGGAAGGCCTCAAAATAGCACACT----------------------------------------------------------------------------CT------------GGCTTCTGTTGGTCTCGC----------------------------TCCACTCCACACCTCCACCCGTTTTGTGGATTACAGATTAAAATGCAC-AGCGCAGGGCGTTGATAAGA
droPer2 scaffold_40:459034-459284 - TGCACTTCTGGGAGATGCGCGTCATCACAGCGCTGGCCGGCACA-GATGTGGTGAGTCTT-------------GAG--------AAGCA--TAATCCCAG---ATGCCCAGATCGCCTGGC-CT-------GACAACTAGTT-------GGG--------------------T----GAGATGAATGTCAGTCAAAGTCGCTGATAGGAAGGCCTCAAAATAGCACACT----------------------------------------------------------------------------CT------------GGCTTCTGTTGGTCTCGC----------------------------TCCACTCCACACCTCCACCCGTTTTGTGGATTACAGATTAAAATGCAC-AGCGCAGGGCGTTGATAAGA
droWil2 scf2_1100000004837:1582096-1582417 + TGCACTTCTGGGAGATGCGTATCATTACCGCTTTGACTGGCACA-GATGTGGTAAGTAGA-------------AAG--------AAAGACCCAATCTTAAACCATGGCTAGAAC-CATGGCAAT-------GAGAACTATTTTTAAATAGGG-----------------C-AG----CCGATGAATGTCAGACAAAGTCGGTT---------GGTGATAAGGGAACATTCCTGTATACATCCATTTATGTACATACATTACATAATTTGTATACTTTGTTGTTGTGGACATACATATGTATATGTGGCACACCAACTGTGCCTGCTGCTGATCTCAATTTCAATT---------------------------------------------------TACAGAACATAATGCGGGATTACAATGAACTGATAAGA
droVir3 scaffold_13049:14560938-14560996 + TGCACTTCTGGGAGATGCGCGTCATTACAGCGCTGGCAGGTACA-GATGTGGTAAGTTCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6680:12739450-12739508 - TTCATTTCTGGGAAATGCGTATAATTACAGTGCTGGCTGGTACT-GATGTGGTAAGTTCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15110:15673693-15673751 - TGCACTTCTGGGAGATGCGCGTCATCACAGTGCTGGCGGGCACA-GATGTGGTAAGTTCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13337:11198647-11198883 - TGCACTTTTGGGAGATGCGAGTCATTACCGCACTGGCTGGAACA-GATGTGGTAGGTTGTCAGGTCGGGTTATCACCCCTT------TA--G-------------------------TGGC-TT-------GACAACCAA-------------TGA------------T---T----AAGATGAAAGTCAGTCAAAGTCGCTA---------CACGAAAATAGAACA--AC----------------------------------------------------------------------TTGTAG------------GGCATCTGGTGTGCTCGATTCCATTGGAAACGATTTAATTGTTCGCTCCAT--------------TGT---ACGGATTACAGATTACAATG-------------AAGCGATAAGA
droBip1 scf7180000396569:195260-195496 + TGCACTTCTGGGAGATGCGAGTCATCACCGCGCTGGCTGGCACA-GATGTGGTAGGTTCGCAGGTCGGGTTATCACCCCTT------CA--G-------------------------CGGC-TT-------GACAACC-------------GATGA------------T---T----AAGATGAAAGTCAGTCAAAGTCGCTA---------CACGAAAATAGAACA--GC----------------------------------------------------------------------TTGTAG------------GGCATCTGGTGTGCTCGATTCCATTCGAAACGATTTAATTGTTGGCTCCAT--------------TGT---ACGGATTACAGATTACAATG-------------AAGCGATAAGA
droKik1 scf7180000302697:400197-400463 + TGCACTTCTGGGAAATGCGCGTCATCACGGCTCTAGCCGGCACA-GATGTGGTGAGTGCGTGGGTCGGGTTATCAACCCGGGAGAGGCA--G-------------------------CGGC-CT-------GGCAACTAGTT-------GGGATGCATGGATGGCTGATCGAC----GAGATGAATGTCAGGCAAAGTCGC-A---------CCTGAAAGTGGAACAACACTG--------------------------------------------------------------------CTGTGG------------GGCATCTGGTGTGCTCGATTCCATTGGAAACGATTTAATTGTACGCTTCAT--------------TGT---GGGGATTACAGATTACAATG-------------CGGCGATAAGA
droFic1 scf7180000454065:1345998-1346230 - TTCACTTCTGGGAGATGCGCGTCATTACGACGCTGGCCGGCACA-GATGTGGTGAGCTAT-------------CAA---------------------------------------CCCGGC-TT-------GGCAACTATGT-------GGGATGC------------ACGGC----GAGATGAATGTCAGTCAAAGTCGCCG---------TCTGAAAATAGAACGCTGC----------------------------------------------------------------------CTGCGG-----------AGGCATCTGGTGTGCTCGATTCCATTGGCAACAACTTAATTGTTCGCACCAT--------------TGTACGCTAGATTACAGATTACAACG-------------AAGCGATAAGA
droEle1 scf7180000491193:5237186-5237426 - TCCACTTCTGGGAGATGCGCGTCATCACGACGCTGGCCGGCACA-GATGTGGTGAGTTAT-------------CAG---------------------------------------TCCGAC-TTGGCTGTTGGCAACTAGTT-------GGAATGC------------TCTCC----GAGATGAATGTCAGTCAAAGTCGCCG---------TCTGAAAATAGAACACTGC----------------------------------------------------------------------CTGCGA-----------CGGCATCTGGTGTGCTCGATTCCATTGGAAACAATTTAATTGTTGGCTGAAT--------------TGTACTAGGGATTACAGATTACAACGC------------GGGCGATAAGA
droRho1 scf7180000779350:976-1208 + TCCATTTCTGGGAGATGCGTGTCATCACGACGCTGGCCGGCACA-GATGTGGTGAGTTAT-------------CAG---------------------------------------CCCGGC-TT-------GGCAACTAGTT-------GGGATGC------------TCTGT----GAGATGAATGTCAGTCAAAGTCGCCG---------TCTGAAAATAGAACACTGC----------------------------------------------------------------------CTGCGG-----------AGGCATCTGGTGTGCTCGATTCCATTGGAAACAACTTAATTGTTAGCTTCAT--------------TGTACTACAGATTACAGATTACAACA-------------CGGCGATAAGA
droBia1 scf7180000302334:410082-410313 - TCCACTTCTGGGAGATGCGCGTCATCACGACTCTGGCCGGCACA-GATGTGGTGAGTTAT-------------CAG---------------------------------------CCCGGC-TT-------GGCAACTAGTT-------GGGATGC------------TCCGC----GAGATGAATGTCAGTCAAAGTCGCCG---------CCTTAAAATAGATCACCGC----------------------------------------------------------------------CTGCTA------------GGCATCTGGTGTGCCGGATTCCATTGCTTACGGCTTGATTGTTCACTTTAT--------------TGTACTACGGATTACAGATTACAAGG-------------CGGCGATAAGA
droTak1 scf7180000415815:227000-227230 + TCCACTTTTGGGAGATGCGCGTCATCACCACTCTGGCCGGCACC-GATGTGGTGAGTTAT-------------CAG---------------------------------------CCCGGC-TT-------GGCAACTAGTT-------GGGATGC------------TCCGCTAGAGAGATGAAAGTCAGTCAAAGTCGCCG---------CCTTAAAATAGATCACTGC----------------------------------------------------------------------CTA-----------------CAGCTGGTGAGCTCGATTCCATTGCTTACGACTCGATTGTTGGCTTCAT--------------TGTATTACGGATTACAGATTACAAGG-------------CGGCGATAAGA
droEug1 scf7180000409824:13850-14081 + TCCACTTTTGGGAAATGCGCGTCATCACGACTTTAGCCGGCACA-GATGTGGTGAGTTAT-------------CAG---------------------------------------CCCGGC-TT-------GACAACTAGTT-------GGAATGT------------TCCGC----GAGATGAATGTCAGTCAAAGTCGCCG---------CCTTAAAATAGCACAGTGC----------------------------------------------------------------------CTGCTA------------GGCATCTGGTGTACTCAATTCCATTGGAGACGACTTAATTGTTCGCATCAT--------------TGTACTACGGATTACAGATTACAACG-------------CGACGATAAGA
dm3 chr3L:15961744-15961975 + TGCACTTTTGGGAGATGCGCGTCATCACGACTCTGGCCGGCACG-GATGTGGTTAGTTAT-------------CAG---------------------------------------GCCGGC-TT-------GGCAACTAGTT-------GGGATGC------------TCAGC----ATGATGAATGTCACTCAAAGTCGCCG---------CCTTAAAATAGAACACAAC----------------------------------------------------------------------TAACCA------------GGCATCTGGTGTGCTCGTTTCCATTGGAGACGACTTGATTGTTCGCTTCGT--------------TGTATTATGGATTACAGATTACAACG-------------CGGCGATAAGA
droSim2 3l:15580410-15580641 + dsi_12998 TGCACTTTTGGGAGATGCGCGTCATCACGACTCTGGCCGGCACG-GATGTGGTTAGTTAT-------------CAG---------------------------------------GCCGGC-TT-------GGCAACTAGTT-------GGGATGC------------TCAGC----ATGATGAATGTCACTCAAAGTCGCCG---------CCTTAAAATAGAACACAAC----------------------------------------------------------------------TAACCA------------AGCATCTGGTGTGCTCGATTCCATTGGAGACGGCTTGATTGTTCGCTTCGT--------------TGTATTATGGATTACAGATTACAACG-------------CGGCGATAAGA
droSec2 scaffold_0:8061958-8062189 + TGCACTTTTGGGAGATGCGCGTAATCACGACTCTGGCCGGCACGGGATGTGGTTAGT-AT-------------CAG---------------------------------------GCCGGC-TT-------GGCAACTAGTT-------GGGATGC------------TCAGC----ATGATGAATGTCACTCAAAGTCGCCG---------CCTTAAAATAGAACACAAC----------------------------------------------------------------------TAACCA------------AGCATCTGGTGTGCTCGATTCCATTGGAGACGGCTTGATTGTTCGCTTCGT--------------TGTATTATGGATTACAGATTACAACG-------------CGGCGATAAGA
droYak3 v2_chr3L_random_104:907-1138 + TGCACTTTTGGGAAATGCGCGTCATCACGACTCTGGCCGGCACG-GATGTGGTTAGTGAC-------------CAG---------------------------------------CCCGGC-TT-------AGCAACTAGTT-------GGGATGC------------TCAGC----GTGACGAAAGTCACTCAAAGTCGTCG---------CCTTAAAATAGAACACCAC----------------------------------------------------------------------TAACCA------------GGCATCTGGTGTACTCGATTCCATTGGAGACGGTTTGATTGTTCGCTTCAT--------------TGTATTTTGGATTACAGATTGTAACG-------------CGGCGATAAGA
droEre2 scaffold_4784:18206147-18206374 + TGCACTTTTGGGAGATGCGCGTCATTACGACTCTGGCCGGCACG-GATGTGGTTAGTTAT-------------CAG---------------------------------------CCCGGC-TT-------GGCAACTAGTT-------GGAATGC------------TCAGC----ATGACGAATGTCACTCAAAGTCGTC-------------TAAAATAGAACACTAG----------------------------------------------------------------------TAACCA------------GGCATCTGGTGTACTCGATTCCATTGGAGACGACTTGATTGTTCGCCTCAT--------------TGTATTATGGATTACAGATTGCAACG-------------CGGCGATAAGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
TGCACTTCTGGGAGATGCGCGTCATCACAGCGCTGGCCGGCACA-GATGTGGTGAGTCTT-------------GAG--------AAGCA--TAATCCCAG---ATGCCCAGATCGCCTGGC-CT-------GACAACTAGTT-------GGG--------------------T----GAGATGAATGTCAGTCAAAGTCGCTGATAGGAAGGCCTCAAAATAGCACACT----------------------------------------------------------------------------CT------------GGCTTCTGTTGGTCTCGC----------------------------TCCACTCCACACCTCCACCCGTTTTGTGGATTACAGATTAAAATGCAC-AGCGCAGGGCGTTGATAAGASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................................................................TAATCCCAG---ATGCCCAGATCGC..............................................................................................................................................................................................................................................................................................................................2211.0010100000000
...................................................................................................................................GACAACTAGTT-------GGG--------------------T----GAGATG...........................................................................................................................................................................................................................................................2111.0010100000000
......................................................................................................................................AACTAGTT-------GGG--------------------T----GAGATGAATGTCAG...................................................................................................................................................................................................................................................2611.0010000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................AAATGCAC-AGCGCAGGGCGTT.......2111.0010100000000
....................................................................................................................................................................................ATGAATGTCAGTCAAAGTCGC.........................................................................................................................................................................................................................................2111.0010100000000
..................................................................................................................................................................................................................................................................................................................T------------GGCTTCTGTTGGTCTCGC----------------------------T....................................................................2011.0010100000000
.........................................................................................................................................................................................................................AAATAGCACACT----------------------------------------------------------------------------CT------------GGCTTCT............................................................................................................2111.0010100000000
.........................................................................................................................................TAGTT-------GGG--------------------T----GAGATGAATGTC.....................................................................................................................................................................................................................................................2111.0010100000000
........................................................................................................................................CTAGTT-------GGG--------------------T----GAGATGAATG.......................................................................................................................................................................................................................................................2011.0010000000010
...........................................................................................TAATCCCAG---ATGCCCAGATT................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..............................................................................................................................................................................................GTCAAAGTCGCTGATAGGAA................................................................................................................................................................................................................................2011.0010100000000
......................CATCACAGCGCTGGCCGGC.........................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.......................................................................................................................................ACTAGTT-------GGG--------------------T----GAGATGAATGTCAGT..................................................................................................................................................................................................................................................2611.0010000100000
...............................................................................................................................................................................................................................CACACT----------------------------------------------------------------------------CT------------GGCTTCTGTTGG.......................................................................................................2011.0010100000000
................................................................................................................................................................................................................................ACACT----------------------------------------------------------------------------CT------------GGCTTCTGTTGGTC.....................................................................................................2111.0010100000000
droPer2
TGCACTTCTGGGAGATGCGCGTCATCACAGCGCTGGCCGGCACA-GATGTGGTGAGTCTT-------------GAG--------AAGCA--TAATCCCAG---ATGCCCAGATCGCCTGGC-CT-------GACAACTAGTT-------GGG--------------------T----GAGATGAATGTCAGTCAAAGTCGCTGATAGGAAGGCCTCAAAATAGCACACT----------------------------------------------------------------------------CT------------GGCTTCTGTTGGTCTCGC----------------------------TCCACTCCACACCTCCACCCGTTTTGTGGATTACAGATTAAAATGCAC-AGCGCAGGGCGTTGATAAGASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................................................................................................................T-------GACAACTAGTT-------GGG--------------------T----GAG..............................................................................................................................................................................................................................................................1911.001000010
................................................................................................CCAG---ATGCCCAGATCGCCTG...........................................................................................................................................................................................................................................................................................................................2011.001010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAC-AGCGCAGGGCGTTGA.....2111.001000010
droWil2
TGCACTTCTGGGAGATGCGTATCATTACCGCTTTGACTGGCACA-GATGTGGTAAGTAGA-------------AAG--------AAAGACCCAATCTTAAACCATGGCTAGAAC-CATGGCAAT-------GAGAACTATTTTTAAATAGGG-----------------C-AG----CCGATGAATGTCAGACAAAGTCGGTT---------GGTGATAAGGGAACATTCCTGTATACATCCATTTATGTACATACATTACATAATTTGTATACTTTGTTGTTGTGGACATACATATGTATATGTGGCACACCAACTGTGCCTGCTGCTGATCTCAATTTCAATT---------------------------------------------------TACAGAACATAATGCGGGATTACAATGAACTGATAAGASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....................................................................................................................................................GGG-----------------C-AG----CCGATGAATGTCAGACA................................................................................................................................................................................................................................................2311.00100010
................GCGTATCATTACCGCTTTGACTGGCAC.......................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000
..............................CTTTGACTGGCACA-GATGTGG..............................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
droVir3
TGCACTTCTGGGAGATGCGCGTCATTACAGCGCTGGCAGGTACA-GATGTGGTAAGTTCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....TTCTGGGAGATGCGCGTCATT........................................................................................................................................................................................................................................................................................................................................................................................................................2112.002000000000000000001000000000001000000000000000000000000000000000
............AGATGCGCGTCATTACAGCG..................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000010000000000000000000000000000000000000000000
......TCTGGGAGATGCGCGTCATTACAGC...................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000100000000000000000000000000
....CTTCTGGGAGATGCGCGTCA..........................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.....TTCTGGGAGATGCGCGTCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000100000000000000000000000000000000000000000000000
.....TTCTGGGAGATGCGCGTCATTT.......................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000010000000000000000000000000000000000000000
...ACTTCTGGGAGATGCGCGTCA..........................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000100000000000000000000000000000000000000000
droMoj3
TTCATTTCTGGGAAATGCGTATAATTACAGTGCTGGCTGGTACT-GATGTGGTAAGTTCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
TGCACTTCTGGGAGATGCGCGTCATCACAGTGCTGGCGGGCACA-GATGTGGTAAGTTCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
........................TCACAGTGCTGGCGGGCAC.......................................................................................................................................................................................................................................................................................................................................................................................................1911.00110
.......................ATCACAGTGCTGGCGGGCAC.......................................................................................................................................................................................................................................................................................................................................................................................................2011.00110
droAna3
TGCACTTTTGGGAGATGCGAGTCATTACCGCACTGGCTGGAACA-GATGTGGTAGGTTGTCAGGTCGGGTTATCACCCCTT------TA--G-------------------------TGGC-TT-------GACAACCAA-------------TGA------------T---T----AAGATGAAAGTCAGTCAAAGTCGCTA---------CACGAAAATAGAACA--AC----------------------------------------------------------------------TTGTAG------------GGCATCTGGTGTGCTCGATTCCATTGGAAACGATTTAATTGTTCGCTCCAT--------------TGT---ACGGATTACAGATTACAATG-------------AAGCGATAAGASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TGCACTTCTGGGAGATGCGAGTCATCACCGCGCTGGCTGGCACA-GATGTGGTAGGTTCGCAGGTCGGGTTATCACCCCTT------CA--G-------------------------CGGC-TT-------GACAACC-------------GATGA------------T---T----AAGATGAAAGTCAGTCAAAGTCGCTA---------CACGAAAATAGAACA--GC----------------------------------------------------------------------TTGTAG------------GGCATCTGGTGTGCTCGATTCCATTCGAAACGATTTAATTGTTGGCTCCAT--------------TGT---ACGGATTACAGATTACAATG-------------AAGCGATAAGASizeHit CountTotal NormTotal
No Reads
droKik1
TGCACTTCTGGGAAATGCGCGTCATCACGGCTCTAGCCGGCACA-GATGTGGTGAGTGCGTGGGTCGGGTTATCAACCCGGGAGAGGCA--G-------------------------CGGC-CT-------GGCAACTAGTT-------GGGATGCATGGATGGCTGATCGAC----GAGATGAATGTCAGGCAAAGTCGC-A---------CCTGAAAGTGGAACAACACTG--------------------------------------------------------------------CTGTGG------------GGCATCTGGTGTGCTCGATTCCATTGGAAACGATTTAATTGTACGCTTCAT--------------TGT---GGGGATTACAGATTACAATG-------------CGGCGATAAGASizeHit CountTotal NormTotal
No Reads
droFic1
TTCACTTCTGGGAGATGCGCGTCATTACGACGCTGGCCGGCACA-GATGTGGTGAGCTAT-------------CAA---------------------------------------CCCGGC-TT-------GGCAACTATGT-------GGGATGC------------ACGGC----GAGATGAATGTCAGTCAAAGTCGCCG---------TCTGAAAATAGAACGCTGC----------------------------------------------------------------------CTGCGG-----------AGGCATCTGGTGTGCTCGATTCCATTGGCAACAACTTAATTGTTCGCACCAT--------------TGTACGCTAGATTACAGATTACAACG-------------AAGCGATAAGASizeHit CountTotal NormTotal
No Reads
droEle1
TCCACTTCTGGGAGATGCGCGTCATCACGACGCTGGCCGGCACA-GATGTGGTGAGTTAT-------------CAG---------------------------------------TCCGAC-TTGGCTGTTGGCAACTAGTT-------GGAATGC------------TCTCC----GAGATGAATGTCAGTCAAAGTCGCCG---------TCTGAAAATAGAACACTGC----------------------------------------------------------------------CTGCGA-----------CGGCATCTGGTGTGCTCGATTCCATTGGAAACAATTTAATTGTTGGCTGAAT--------------TGTACTAGGGATTACAGATTACAACGC------------GGGCGATAAGASizeHit CountTotal NormTotal
No Reads
droRho1
TCCATTTCTGGGAGATGCGTGTCATCACGACGCTGGCCGGCACA-GATGTGGTGAGTTAT-------------CAG---------------------------------------CCCGGC-TT-------GGCAACTAGTT-------GGGATGC------------TCTGT----GAGATGAATGTCAGTCAAAGTCGCCG---------TCTGAAAATAGAACACTGC----------------------------------------------------------------------CTGCGG-----------AGGCATCTGGTGTGCTCGATTCCATTGGAAACAACTTAATTGTTAGCTTCAT--------------TGTACTACAGATTACAGATTACAACA-------------CGGCGATAAGASizeHit CountTotal NormTotal
No Reads
droBia1
TCCACTTCTGGGAGATGCGCGTCATCACGACTCTGGCCGGCACA-GATGTGGTGAGTTAT-------------CAG---------------------------------------CCCGGC-TT-------GGCAACTAGTT-------GGGATGC------------TCCGC----GAGATGAATGTCAGTCAAAGTCGCCG---------CCTTAAAATAGATCACCGC----------------------------------------------------------------------CTGCTA------------GGCATCTGGTGTGCCGGATTCCATTGCTTACGGCTTGATTGTTCACTTTAT--------------TGTACTACGGATTACAGATTACAAGG-------------CGGCGATAAGASizeHit CountTotal NormTotal
No Reads
droTak1
TCCACTTTTGGGAGATGCGCGTCATCACCACTCTGGCCGGCACC-GATGTGGTGAGTTAT-------------CAG---------------------------------------CCCGGC-TT-------GGCAACTAGTT-------GGGATGC------------TCCGCTAGAGAGATGAAAGTCAGTCAAAGTCGCCG---------CCTTAAAATAGATCACTGC----------------------------------------------------------------------CTA-----------------CAGCTGGTGAGCTCGATTCCATTGCTTACGACTCGATTGTTGGCTTCAT--------------TGTATTACGGATTACAGATTACAAGG-------------CGGCGATAAGASizeHit CountTotal NormTotal
No Reads
droEug1
TCCACTTTTGGGAAATGCGCGTCATCACGACTTTAGCCGGCACA-GATGTGGTGAGTTAT-------------CAG---------------------------------------CCCGGC-TT-------GACAACTAGTT-------GGAATGT------------TCCGC----GAGATGAATGTCAGTCAAAGTCGCCG---------CCTTAAAATAGCACAGTGC----------------------------------------------------------------------CTGCTA------------GGCATCTGGTGTACTCAATTCCATTGGAGACGACTTAATTGTTCGCATCAT--------------TGTACTACGGATTACAGATTACAACG-------------CGACGATAAGASizeHit CountTotal NormTotal
No Reads
dm3
TGCACTTTTGGGAGATGCGCGTCATCACGACTCTGGCCGGCACG-GATGTGGTTAGTTAT-------------CAG---------------------------------------GCCGGC-TT-------GGCAACTAGTT-------GGGATGC------------TCAGC----ATGATGAATGTCACTCAAAGTCGCCG---------CCTTAAAATAGAACACAAC----------------------------------------------------------------------TAACCA------------GGCATCTGGTGTGCTCGTTTCCATTGGAGACGACTTGATTGTTCGCTTCGT--------------TGTATTATGGATTACAGATTACAACG-------------CGGCGATAAGASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................................................................................................................................................................................TGAATGTCACTCAAAGTCGCC........................................................................................................................................................................................................................................21111.001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................AATGTCACTCAAAGTCGCCG---------C.............................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......TTTGGGAGATGCGCGTCATCACGA....................................................................................................................................................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.GCACTTTTGGGAGATGCGCGTCATCACGA....................................................................................................................................................................................................................................................................................................................................................................................................................2913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................GTGTGCTCGTTTCCATTGGAG......................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000
.......................................................................................................................................................................................................................................................................................................................................................................GTTCGCTTCGT--------------TGTATTATGG........................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
...............TGCGCGTCATCACGACTCTGG..............................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................CATCACGACTCTGGCCGG..........................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................TACAGATTACAACG-------------CGGCGAT....2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................ATTACAGATTACAACG-------------CGGCG......2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
........................TCACGACTCTGGCCGGCACG-G....................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................AAGTCGCCG---------CCTTAAAATAGA..................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................ATGAATGTCACTCAAAGTCGC.........................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................GC------------TCAGC----ATGATGAATGT......................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.............GATGCGCGTCATCACGACTCTGGCC............................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................CG-GATGTGGTTAGTTAT-------------CAG---------------------------------------G..............................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................GGAGACGACTTGATTGTTCGC.....................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................ATCACGACTCTGGCCGGCACG-.....................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................GGCATCTGGTGTGCTCGTTTCCATTGGA.......................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................ATGGATTACAGATTACAACG-------------C..........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....CTTTTGGGAGATGCGCGTCATC........................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................C----------------------------------------------------------------------TAACCA------------GGCATCTGGTGTGC.....................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................TCCATTGGAGACGACTTGATT...........................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................TGATTGTTCGCTTCGT--------------TGTA..............................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TTTTGGGAGATGCGCGTCATCAC......................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......TTTGGGAGATGCGCGTCATCAC......................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................ATGTCACTCAAAGTCGCCG---------CC............................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................AGAACACAAC----------------------------------------------------------------------TAACCA------------GGCAT..............................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................A------------GGCATCTGGTGTGCTCGTTT...............................................................................................2111.0010000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................ATCTGGTGTGCTCGTTTCCAT...........................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................CCA------------GGCATCTGGTGTGCTCG..................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................TCTGGTGTGCTCGTTTCCATT..........................................................................................2111.0010000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................ACTAGTT-------GGGATGC------------TCAGC----ATC..............................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......TTTGGGAGATGCGCGTCATC........................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
....................................................................................................................................................................................................................................................................................................................................................................ATTGTTCGCTTCGT--------------TGTATTATGG........................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
................................................................................................................................................................................................................................ACACAAC----------------------------------------------------------------------TAACCA------------GGCATCTGGTG........................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
.....................................................TAGTTAT-------------CAG---------------------------------------GCCGGC-TT-------GGCA...........................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................C-TT-------GGCAACTAGTT-------GGGATGC------------..........................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...ACTTTTGGGAGATGCGCGTCA..........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
....CTTTTGGGAGATGCGCGTCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................GACTTGATTGTTCGCTTCGT--------------TGTATT............................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................TTCGCTTCGT--------------TGTATTATGGA.......................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................GACTCTGGCCGGCACG-GATGT................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............TGCGCGTCATCACGACTCTGGCC............................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................TTCGCTTCGT--------------TGTATTATGGATTACAG.................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................CTTGATTGTTCGCTTCGT--------------TGT...............................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................TTCGCTTCGT--------------TGTATTATGGATT.....................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................ATTGGAGACGACTTGATTGTT........................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
............................................................................................................................................TT-------GGGATGC------------TCAGC----ATGATG...........................................................................................................................................................................................................................................................2011.0010000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.GCACTTTTGGGAGATGCGCGTCATC........................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................GC-TT-------GGCAACTAGTT-------GGGATGA------------..........................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
................................................GTGGTTAGTTAT-------------CAG---------------------------------------GCCGGC-........................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................TGC------------TCAGC----ATGATGAATGTCAC...................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.........................................................................................................................................................................CAGC----ATGATGAATGTCAC...................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................TTGGAGACGACTTGATTGTTC.......................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TGCACTTTTGGGAGATGCGCGTCATCACGACTCTGGCCGGCACG-GATGTGGTTAGTTAT-------------CAG---------------------------------------GCCGGC-TT-------GGCAACTAGTT-------GGGATGC------------TCAGC----ATGATGAATGTCACTCAAAGTCGCCG---------CCTTAAAATAGAACACAAC----------------------------------------------------------------------TAACCA------------AGCATCTGGTGTGCTCGATTCCATTGGAGACGGCTTGATTGTTCGCTTCGT--------------TGTATTATGGATTACAGATTACAACG-------------CGGCGATAAGASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................ATCACGACTCTGGCCGGCACG-.....................................................................................................................................................................................................................................................................................................................................................................................................2112.00202000000000000000
......................................................................................................................................................................................................................................................................................................................................................TTGGAGACGGCTTGATTGTTC.......................................................................2112.00220000000000000000
........................TCACGACTCTGGCCGGCACG-G....................................................................................................................................................................................................................................................................................................................................................................................................2112.00202000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................TACAGATTACAACG-------------CGGCG......1912.00200200000000000000
........................................................................................................................................................................................................................................................................................................................................................................TTCGCTTCGT--------------TGTATTATGGAT......................................2211.00110000000000000000
.......................ATCACGACTCTGGCCGGCAC.......................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000000000
...................................................GTTAGTTAT-------------CAG---------------------------------------GCCGGC-TT-------GGCAAC.........................................................................................................................................................................................................................................................................................................2611.00100000010000000000
.................CGCGTCATCACGACTCTGGCC............................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
..........................ACGACTCTGGCCGGCACG-GATGTG...............................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000000000
.....................................................................................................................CGGC-TT-------GGCAACTAGTT-------GGGATG.......................................................................................................................................................................................................................................................................................2311.00101000000000000000
........................................................................................................................................................................................................................................................................................................................................................................TTCGCTTCGT--------------TGTATTATGGATT.....................................2311.00110000000000000000
droSec2
TGCACTTTTGGGAGATGCGCGTAATCACGACTCTGGCCGGCACGGGATGTGGTTAGT-AT-------------CAG---------------------------------------GCCGGC-TT-------GGCAACTAGTT-------GGGATGC------------TCAGC----ATGATGAATGTCACTCAAAGTCGCCG---------CCTTAAAATAGAACACAAC----------------------------------------------------------------------TAACCA------------AGCATCTGGTGTGCTCGATTCCATTGGAGACGGCTTGATTGTTCGCTTCGT--------------TGTATTATGGATTACAGATTACAACG-------------CGGCGATAAGASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................................................................................................................................................................................................................................................................................................................................................TGGAGACGGCTTGATTGTTCGC.....................................................................2211.0010001
...................................................................................................................................................................................GATGAATGTCACTCAAAGTCGCCG---------CCTT..........................................................................................................................................................................................................................2811.0010010
......................AATCACGACTCTGGCCGGCAC.......................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
...................................................................................................................GCCGGC-TT-------GGCAACTAGTT-------GG...........................................................................................................................................................................................................................................................................................2111.0011000
............................................................................................................................................TT-------GGGATGC------------TCAGC----ATGATG...........................................................................................................................................................................................................................................................2011.0010100
....................................................................................................................................................................................................................................................................................................................................................................ATTGTTCGCTTCGT--------------TGTATT............................................2011.0010100
.........................................................................................................................................................................CAGC----ATGATGAATGTCACT..................................................................................................................................................................................................................................................1911.0010010
....................................................................................................................................................................................................GTCGCCG---------CCTTAAAATAGAACA...............................................................................................................................................................................................................2211.0011000
..............ATGCGCGTAATCACGACTCTGGC.............................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100
........................................................................................................................................................ATGC------------TCAGC----ATGATGAATG.......................................................................................................................................................................................................................................................1911.0011000
...............TGCGCGTAATCACGACTCTGG..............................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
droYak3
TGCACTTTTGGGAAATGCGCGTCATCACGACTCTGGCCGGCACG-GATGTGGTTAGTGAC-------------CAG---------------------------------------CCCGGC-TT-------AGCAACTAGTT-------GGGATGC------------TCAGC----GTGACGAAAGTCACTCAAAGTCGTCG---------CCTTAAAATAGAACACCAC----------------------------------------------------------------------TAACCA------------GGCATCTGGTGTACTCGATTCCATTGGAGACGGTTTGATTGTTCGCTTCAT--------------TGTATTTTGGATTACAGATTGTAACG-------------CGGCGATAAGASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................GATTACAGATTGTAACG-------------CGG........2011.00101000000000
......TTTGGGAAATGCGCGTCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
.....................................................................................................................CGGC-TT-------AGCAACTAGTT-------GG...........................................................................................................................................................................................................................................................................................1911.00101000000000
droEre2
TGCACTTTTGGGAGATGCGCGTCATTACGACTCTGGCCGGCACG-GATGTGGTTAGTTAT-------------CAG---------------------------------------CCCGGC-TT-------GGCAACTAGTT-------GGAATGC------------TCAGC----ATGACGAATGTCACTCAAAGTCGTC-------------TAAAATAGAACACTAG----------------------------------------------------------------------TAACCA------------GGCATCTGGTGTACTCGATTCCATTGGAGACGACTTGATTGTTCGCCTCAT--------------TGTATTATGGATTACAGATTGCAACG-------------CGGCGATAAGASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................GATTACAGATTGCAACG-------------CGGC.......2111.0010000100
...........................................................................................................................................................................................................................ATAGAACACTAG----------------------------------------------------------------------TAACCA------------GGC................................................................................................................2111.0011000000
...................................................................................................................................GGCAACTAGTT-------GGAATGC------------T.........................................................................................................................................................................................................................................................................1911.0010010000
.........................TACGACTCTGGCCGGCACG-G....................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100

Generated: 05/18/2015 at 06:40 AM