ID:

dps_3314

 Coordinate:

XR_group8:4486150-4486300 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-6.8 -6.6 -6.6

Flybase annnotation

exon [dpse_GLEANR_7879:2]; CDS [Dpse\GA10048-cds]; intron [Dpse\GA10048-in]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------#######################################-----------
GAGAGAGCACGCAGATCTACAGTGGGTTGGAACAAAAACATCAGTGGAATGGGGAAATCAATGATTAGTGGAATTAGGGGGCAATGAATAATGTGTGATTGGGAAATATTACTATTATAACAAATTATTATATTTAAATGATTGTAAATGGAAAACTAATTTGTGTTTCTTCCCCTCTCCATCTCCACCCTGTCATTGCAGCAAGCGAACGAAGCGGAGAAAGACAGCAGGCAGTCGTAAGCAGCAGGCTG
*************************************************************.(((((...((((.............((((((.(((((........))))))))))).............))))...)))))........**************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 M059
embryo
 V112
male body		 SRR902012
CNS imaginal disc
 GSM343916
embryo
 GSM444067
head
.......................................................................................................................................................................................................................GGAGAAAGACAGCAGGCAGTC............... 21 0 1 2.00 2 2 0 0 0 0 0
.....................................ACATCAGTGGAATGGGGA.................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................................................................................................GAAAGACAGCAGGCAGTCGT............. 20 0 1 1.00 1 1 0 0 0 0 0
....................................................................................................................................................................................................................................AGGCAGTCGTAAGCAGCAG.... 19 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................................................................................................................GCAAGCGAACGAAGCGGAGA............................... 20 0 1 1.00 1 1 0 0 0 0 0
.............................................................TGATTAGTGGAATTAGGGGGCAATGA.................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0
................................................................................................................................................................................................................ACGAAGCGGAGAAAGACAGCAGGC................... 24 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................ATTTAAATGATTGTAAATGG.................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................................................................................................CGAAGCGGAGAAAGACAGCAGGCAGTC............... 27 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................................ACTAATTTGTGTTTCTTCCCC............................................................................ 21 0 1 1.00 1 0 1 0 0 0 0
................................................................................................................................................................................................................ACGAAGCGGAGAAAGACAGCAGGCAGTC............... 28 0 1 1.00 1 1 0 0 0 0 0
....GAGCACGCAGATCTACAGTGGGTTGGA............................................................................................................................................................................................................................ 27 0 1 1.00 1 0 0 1 0 0 0
................................................................................................................................................................................................................ACGAAGCGGAGAAAGACAGC....................... 20 0 1 1.00 1 1 0 0 0 0 0
............................................................................................................................................................................................................GCCAACGAAGCGGAGAAAGACAG........................ 23 1 1 1.00 1 0 1 0 0 0 0
.........................................................................................................................................................................................................................AGAAAGACAGCAGGCAGTC............... 19 0 1 1.00 1 0 1 0 0 0 0
..................................................................................................................................................................................................................GGAGCGGAGAAAGACAGC....................... 18 1 2 0.50 1 0 1 0 0 0 0
..............................................................GATTAGTGGCATTAAGGG........................................................................................................................................................................... 18 2 4 0.25 1 0 0 0 0 0 1
.......................................................................................AACAGGTGTGATTGGGAAAT................................................................................................................................................ 20 3 6 0.17 1 0 0 1 0 0 0
............................................................................................GAGTGATTGGGAAACATTA............................................................................................................................................ 19 2 6 0.17 1 0 0 0 0 1 0
.............................................................................................TGTGAGTGGGAGATATTA............................................................................................................................................ 18 2 7 0.14 1 0 0 0 0 1 0
........................................................ATCAATGATTAGAGGCCTTA............................................................................................................................................................................... 20 3 9 0.11 1 0 1 0 0 0 0
............................................................ATGATTAGAGGCATTTGGGG........................................................................................................................................................................... 20 3 15 0.07 1 0 0 0 0 1 0

Anti-sense strand reads

CTCTCTCGTGCGTCTAGATGTCACCCAACCTTGTTTTTGTAGTCACCTTACCCCTTTAGTTACTAATCACCTTAATCCCCCGTTACTTATTACACACTAACCCTTTATAATGATAATATTGTTTAATAATATAAATTTACTAACATTTACCTTTTGATTAAACACAAAGAAGGGGAGAGGTAGAGGTGGGACAGTAACGTCGTTCGCTTGCTTCGCCTCTTTCTGTCGTCCGTCAGCATTCGTCGTCCGAC
****************************************************************************************************.(((((...((((.............((((((.(((((........))))))))))).............))))...)))))........************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR902010
ovaries
 M040
female body
 M059
embryo
 GSM343916
embryo
.............................................................................................................................................................................GGAGAGGTAGAGGTGGGAC........................................................... 19 0 1 1.00 1 1 0 0 0
......................................GTAGTCTCCTTACCCCTTA.................................................................................................................................................................................................. 19 2 4 0.25 1 0 1 0 0
..............................................................................CCCGTTACTTATGTCATACTA........................................................................................................................................................ 21 3 4 0.25 1 0 0 1 0
................................................................................................................................................ATTTACCGTTTGATTAAACTCG..................................................................................... 22 3 5 0.20 1 0 1 0 0
...............................................................................................................................................................................................CAGTAGGGTCGTTCGCATG......................................... 19 3 6 0.17 1 0 0 0 1
...............................................................................................................................................................................AGAGGTAGAGGAGGGAGGGTAA...................................................... 22 3 11 0.09 1 0 1 0 0
.......................................................................................................................................................................................................................TCTCTTTATGTCGTCCTTCA................ 20 3 20 0.05 1 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 XR_group8:4486100-4486350 - dps_3314 GAGAGA-----GCACGCAGATCTACAGTGGGTT---------------------------------------------------------GGAACAAAAACATCAGTGGAATGGGGAAATCAATGATTAGTGGAATTAGGGGGCAATGAATAATGTGTGATTGGGAAATAT--------T-------AC--------------------TATTATAACAAATTATTAT---------ATTTAAAT----GATTGTAAAT--G-------------------------------------GAAAACTAATTT-GTGTTTC-TTCCC--------CTCTC--CATCTCCACCCTGTCATTGCAGCAAGCGAACGAAGCGGAGAAAGACAGCAGGCAGTCGTAAG-CAGCAGGCTG
droPer2 scaffold_29:721237-721486 - GAGAGA-----GCACGCAGATCTACAGTGGGTT---------------------------------------------------------G-AACAAAAACATCAGTGGAATGGGGAAATCAATGATTAGTGGAATTAGGGGGCAATGAATAATGTGTGATTGGGAAATAT--------T-------AC--------------------TATTATAACAAATTATTAT---------ATTTAAAT----GATTGTAAAT--G-------------------------------------GAAAACTAATTT-GTGTTTC-TTCCC--------CTCTC--CATCTCCACCCTGTCATTGCAGCAAGCGAACGAAGCGGAGAAAGACAGCAGGCAGTCGTAAG-CAGCAGGCTG
droWil2 scf2_1100000004511:8954627-8954703 + AAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTA-AACTAATTG-------------------------------------------------------------------------------------------CTTC-TCTTT--------CTCTATCT-------------CTTTACAGCATCTGAAT---GCAGAAAAGGACAGCAGACAGTCGTAA------------
droVir3 scaffold_13049:8873704-8874005 - dvi_19074 AGCAACAAAATGCACACAAAGCTCGAGCGCTACGTAAACAAATGAGACGACAAGCCAAAAGAAGAAGAGTTGCAAAAAGCAAAAGAAATA------------CGAAAACAACAGCAAATTAATTGATAA------------------------TTCG------TGATTTGTTGTGCAAGTCAGGCATAC-------------------------------ACTTATAC---------ACTTATAC---TCTACACTAAT--ACTCTACACTTATATTGTTAAG----ACTTAAAACGATTTTGACTAATTT-CTTGCTC-TCTCTCTCTCTCGCTTTCTCT-------------CATTGCAGCAAATCAGC---GGCGAAAAGGACAGCAGGCAATCGTAAAGCAGCTGG--C
droMoj3 scaffold_6680:6467789-6467905 + TA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C--------------------ATTTATAAAGAATACTTAT---------ATTTT--T--------------------------------------------------CAAATTTGACTAATTT-TCGCTCT-CTCGC--------TT-ATTCT-------------CATTGCAGCAATTCAGC---GGCGAAAAGGACAGCAGGCAATCGTAAAGCAGCCGA--C
droGri2 scaffold_15110:4632179-4632446 - GACAGA-----CGACAAAAGACGACGACAAGTA-------------------------AAGAAGTAAAGAGG-----AGCAAGCGAAAAG------------CGAAAACAACAGCAAATTAATTGATAA------------------------TTCG------TCAATTGTTGTGCAAGTCAGGCAAACACAGACACACACACGCAAGCATACA-TGCATACTCTTAT---------ACACAGAC----ACTCT-----------------TATACTACTAAGCTAAGCTTAATGCAATTTGTACTAATTGTGTGCTTT-TTTCA--------CTTTCTCT-------------CATTGCAGCAAAATAGC---GGCGAAAAGGACAGCAGGCAATCGTAA------------
droAna3 scaffold_13337:11700827-11700987 + G------------------------------------------------------------------------------------------------------------AACTGGGAATTAATTGATAA------------------------CATAGAATAGCGAAATAA-------AT-------AC-----------------GGCAAATA-AACAAATTATTAT---------ATATCAAT----GATCGGCAAT----------------------------------------AAATACTAATTT-GAATTTC-CCCCT--------TTCTTTAT-------------CGTTTTAGCAATCGAAC---ACGGAGAAGGATAGCCGGCAGTCGTAAG-CG--------
droBip1 scf7180000396589:2272153-2272275 - AT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA-AACAAATTATTAT---------ATTTAAACAATCGTATAA--------------------------------------------AAATACTAATTT-GGATTTC-CCTCC--------TTCTTTGT-------------CATTTTAGCAATCGAAC---GCGGAGAAAGATAGCCGGCAGTCGTAAG-CGTGAAGGAG
droKik1 scf7180000302383:103232-103363 + AA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT-------AT-----------------AGCAAATA-AACAAATTACTGTTGTATGCCAATAATAAT---CGCACAAT-------------------------------------------AAATACTAATTT-GGATTTT-CCCTC--------TTCTCTCT-------------CATTTTAGCCACTGAACGCAGCGGAGAAGGATAGCAGGCAGTCGTAAG-----------
droFic1 scf7180000453052:484422-484593 - AAAACA-----A---------------------------------------------------------------------------------------CAAGCAGC-AAACAGCGAATTAATTGATAA------------------------CATAGAATGGCGAAATGA-------AT-------AT-----------------AGCTAATA-AACAAATTATTCT---------CCTTCAAT---CACACAT--------------------------------------------AAATACTAATTG-GAATTTC-CCCTA--------TTCTCTCT-------------CATTTTAGCCATCGAAT---GCGGAGAAAGACAGCAGGCAGTCGTAAG-C---------
droEle1 scf7180000491249:929255-929418 + ---------------------------------------------------------------------------------------------------------------CAGCGAATTAATTGATAA------------------------CATAGAATGGCGAAATAA-------AT-------AC-----------------AGCTAATA-AACAAATTATTGT---------ACTTCAAC---CAGACAT--------------------------------------------AAATACTAATTT-GAATTTTCCCCTC--------TTGTCTAT-------------CGTTTTAGCCACTGAAT---GCGGAGAAAGACAGCAGGCAGTCGTAAG-CGTGGAAACG
droRho1 scf7180000780101:192063-192231 - TCTAAA-----GCA----------------------------------------------------------------------------------A--AAAAC-----AGCAGCGAATTAATTGATAA------------------------CATAGAATGGCGAAATAA-------AT-------AC-----------------AGCTAATA-AACAAATTATTGT---------GTTTCACC---CAGACAT--------------------------------------------AAATACTAATTT-GAATTTC-CCCTC--------TTCTC--T-------------CTTTTTAGCCACTGAAC---GCCGAGAAAGACAGCAGGCAGTCGTAAG-C---------
droBia1 scf7180000300910:838837-839036 + GAGTGT-----CCCCA-------ACAAAAAGTA---------------------------------------------------------GAAACAGAGCAGTCGGAGGAGCCGGGAATTAATTGATAA------------------------CACAGAATGGCGAAATAA-------AC-------AC-----------------TGCTAATA-AACAAATTATTGT---------ACTCTA-T---CGCCCGTAAATA-C-------------------------------------GAATGCTAATGG-GAATTTC--CCTC--------TGCTCTCT-------------C-TTTTAGCCACTGAAC---GCGGAGAAGGACAGCCGGCAGTCGTAAG-CG--------
droTak1 scf7180000414038:51639-51819 - AG--------------------------------------------------------------------------------------------CAAAACAATCAGTAGAACAGAGAATTAATTGATAA------------------------CATAGAATGGCGAAATAA-------AC-------AC-----------------AGCTAATA-AACAAATTATTGT---------ACTTCAAT---CACCCATAAATATA-------------------------------------AAATACTAATTG-GAATTTC--CCCC--------TTCTCTCT-------------CTTTTTAGCCACTGAAT---GCGGAGAAAGACAGCAGGCAGTCGTAAG-C-------CG
droEug1 scf7180000409184:784042-784186 + A------------------------------------------------------------------------------------------------------------------------ATTGATAA------------------------CACAGAATGGCGAAATAA--------T-------AC-----------------AGCTAATA-AACAAATTATTGT---------ACTTGAAC---TGC------------------------------------------------GAATACTAATTG-GAATTTC-CCCGC---TC--TCTCTCTCT-------------CTTTCTAGCCTCTGAAC---GCGGAGAAGGACAGCAGGCAGTCGTAAG-GG-------G
dm3 chr3L:752136-752318 + A---------------------------------------------------------------------------------------------CAAACAAATCAGTGGAACAGGGAACTAATTGATAA------------------------CATAGAATGGCGAAATAA--------T-------AC-----------------AGCTTATA-AACTAATTATTGC---------ATTTCAAT---CGCACATTAAT--A-------------------------------------ATGTACTAATTT-GAATCTT-CCCGC--------TTCTC--T-------------CTTTTTAGCCACAGAAT---GCGGAGAAAGACAGCAGACAGTCGTAAG-CGTGGAAACG
droSim2 3l:716798-716980 + A---------------------------------------------------------------------------------------------CAAACAAATCAGTGGAACAGGGAACTAATTGATAA------------------------CATAGAATGGCGAAATAA--------T-------AC-----------------AGCTTATA-AACTAATTATTGC---------ATTTCAAT---CGCACATTAAT--A-------------------------------------ACGTACTAATTT-GAATCTT-CCCGC--------TTCTC--T-------------CTTTTTAGCCACCGAAT---GCGGAGAAAGACAGCAGACAGTCGTAAG-CGTGGAAACG
droSec2 scaffold_2:771969-772153 + AA-------------------------------------------------------------------------------------------ACAAACAAATCAGTGGAACAGGGAACTAATTGATAA------------------------CATAGAATGGCGAAATAA--------T-------AC-----------------AGCTTATA-AACTAATTATTGC---------ATTTCAAT---CGCACATTAAT--A-------------------------------------ACGTACTAATTT-GAATCTT-CCCGC--------TTCTC--T-------------CTTTTTAGCCACCGAAT---GCGGAGAAAGACAGCAGACAGTCGTAAG-CGTGGAAACG
droYak3 3L:745922-746093 + AA-------------------------------------------------------------------------------------------------CAATCAGTGGAACAGGCAACTAATTGATAA------------------------CATAGAATGGCGAAATCAT------AC-------AT-----------------AGCTTATA-AACAAATTACTGC---------ATTTCAAT---CGCACATTAAT--A-------------------------------------AAATACTAATTT-GAATATT-CCCGC--------TTCTC--T-------------CTTTTTAGCCACTGAAT---GCGGAGAAAGACAGCAGACAGTCGTAAG-C---------
droEre2 scaffold_4784:764696-764882 + TCTGAA-----GCACAA------------------------------------------------------------------------------AAAACAATCAGTGGAACAGGCAACTAATTGATAA------------------------CATAGAATGGCGAAATCA--------A-------AC-----------------AGCTAATA-AACAAATTACTGC---------ATTTCAAT---CGCACATTAAT--A-------------------------------------AAGTACTAATTT-GAATTTT-GCCGC--------TTTTCTCT-------------TTTTTTAGCCACTGAAT---GCGGAGAAAGACAGCAGACAGTCGTAAG-CG--------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
GAGAGA-----GCACGCAGATCTACAGTGGGTT---------------------------------------------------------GGAACAAAAACATCAGTGGAATGGGGAAATCAATGATTAGTGGAATTAGGGGGCAATGAATAATGTGTGATTGGGAAATAT--------T-------AC--------------------TATTATAACAAATTATTAT---------ATTTAAAT----GATTGTAAAT--G-------------------------------------GAAAACTAATTT-GTGTTTC-TTCCC--------CTCTC--CATCTCCACCCTGTCATTGCAGCAAGCGAACGAAGCGGAGAAAGACAGCAGGCAGTCGTAAG-CAGCAGGCTGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................................................................................................................................................................................................................................................................................................................................................................................GGAGAAAGACAGCAGGCAGTC................2112.0020200000000
...................................................................................................ACATCAGTGGAATGGGGA........................................................................................................................................................................................................................................................................................................1811.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................GAAAGACAGCAGGCAGTCGT..............2011.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................AGGCAGTCGTAAG-CAGCAG....1911.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................GCAAGCGAACGAAGCGGAGA................................2011.0010100000000
...........................................................................................................................TGATTAGTGGAATTAGGGGGCAATGA........................................................................................................................................................................................................................................................................2611.0010000000001
.................................................................................................................................................................................................................................................................................................................................................................................ACGAAGCGGAGAAAGACAGCAGGC....................2411.0010100000000
.............................................................................................................................................................................................................................................ATTTAAAT----GATTGTAAAT--G-------------------------------------G.................................................................................................................2011.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................CGAAGCGGAGAAAGACAGCAGGCAGTC................2711.0010100000000
...............................................................................................................................................................................................................................................................................................................ACTAATTT-GTGTTTC-TTCCC--------C...............................................................................2111.0010010000000
.................................................................................................................................................................................................................................................................................................................................................................................ACGAAGCGGAGAAAGACAGCAGGCAGTC................2811.0010100000000
....GA-----GCACGCAGATCTACAGTGGGTT---------------------------------------------------------GGA................................................................................................................................................................................................................................................................................................................................2711.0010000001000
.................................................................................................................................................................................................................................................................................................................................................................................ACGAAGCGGAGAAAGACAGC........................2011.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................AGAAAGACAGCAGGCAGTC................1911.0010010000000
droPer2
GAGAGA-----GCACGCAGATCTACAGTGGGTT---------------------------------------------------------G-AACAAAAACATCAGTGGAATGGGGAAATCAATGATTAGTGGAATTAGGGGGCAATGAATAATGTGTGATTGGGAAATAT--------T-------AC--------------------TATTATAACAAATTATTAT---------ATTTAAAT----GATTGTAAAT--G-------------------------------------GAAAACTAATTT-GTGTTTC-TTCCC--------CTCTC--CATCTCCACCCTGTCATTGCAGCAAGCGAACGAAGCGGAGAAAGACAGCAGGCAGTCGTAAG-CAGCAGGCTGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................CGGAGAAAGACAGCAGGCA...................1911.001010000
droWil2
AAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTA-AACTAATTG-------------------------------------------------------------------------------------------CTTC-TCTTT--------CTCTATCT-------------CTTTACAGCATCTGAAT---GCAGAAAAGGACAGCAGACAGTCGTAA------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.............................................................................................................................................................................................................................................................................................................................................................................CTGAAT---GCAGAAAAGGACAGC........................2112.00220000
.......................................................................................................................................................................................................................................................................................................................................................................................CAGAAAAGGACAGCAGACAGTCGT..............2411.00100100
...............................................................................................................................................................................................................................................................................................................................................................................GAAT---GCAGAAAAGGACAGCAGACAGT.................2611.00101000
...........................................................................................................................................................................................................................................................................................................................CTTC-TCTTT--------CTCTATCT-------------CTTTACA....................................................2411.00100001
......................................................................................................................................................................................................................................................................................................................................................................................GCAGAAAAGGACAGCAGACAGT.................2211.00100100
........................................................................................................................................................................................................................................................................................................................................................................................AGAAAAGGACAGCAGACAGT.................2011.00100100
droVir3
AGCAACAAAATGCACACAAAGCTCGAGCGCTACGTAAACAAATGAGACGACAAGCCAAAAGAAGAAGAGTTGCAAAAAGCAAAAGAAATA------------CGAAAACAACAGCAAATTAATTGATAA------------------------TTCG------TGATTTGTTGTGCAAGTCAGGCATAC-------------------------------ACTTATAC---------ACTTATAC---TCTACACTAAT--ACTCTACACTTATATTGTTAAG----ACTTAAAACGATTTTGACTAATTT-CTTGCTC-TCTCTCTCTCTCGCTTTCTCT-------------CATTGCAGCAAATCAGC---GGCGAAAAGGACAGCAGGCAATCGTAAAGCAGCTGG--CSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............................................................................................................................................................................................................................................................................................................................................GCTTTCTCT-------------CATTGCAGCAAATC.............................................2311.001000000000000000000000000000010000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................GCAAATCAGC---GGCGAAAAGGAC...........................2211.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................GCAAATCAGC---GGCGAAAAGGACAGC........................2511.001000000000000000000000000000000000000000000000000000000000010000
........................................................AAAAGAAGAAGAGTTGCAAAA................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000001000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................AAGGACAGCAGGCAATCGTA.............2011.001000000000000000000000010000000000000000000000000000000000000000
droMoj3
TA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C--------------------ATTTATAAAGAATACTTAT---------ATTTT--T--------------------------------------------------CAAATTTGACTAATTT-TCGCTCT-CTCGC--------TT-ATTCT-------------CATTGCAGCAATTCAGC---GGCGAAAAGGACAGCAGGCAATCGTAAAGCAGCCGA--CSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...........................................................................................................................................................................................................................................................................................................................................................................................AAAGGACAGCAGGCAATCGTAAAGCA........2611.001100000
................................................................................................................................................................................................................................................................................................................................CTCGC--------TT-ATTCT-------------CATTGC.....................................................1811.001000010
droGri2
GACAGA-----CGACAAAAGACGACGACAAGTA-------------------------AAGAAGTAAAGAGG-----AGCAAGCGAAAAG------------CGAAAACAACAGCAAATTAATTGATAA------------------------TTCG------TCAATTGTTGTGCAAGTCAGGCAAACACAGACACACACACGCAAGCATACA-TGCATACTCTTAT---------ACACAGAC----ACTCT-----------------TATACTACTAAGCTAAGCTTAATGCAATTTGTACTAATTGTGTGCTTT-TTTCA--------CTTTCTCT-------------CATTGCAGCAAAATAGC---GGCGAAAAGGACAGCAGGCAATCGTAA------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
G------------------------------------------------------------------------------------------------------------AACTGGGAATTAATTGATAA------------------------CATAGAATAGCGAAATAA-------AT-------AC-----------------GGCAAATA-AACAAATTATTAT---------ATATCAAT----GATCGGCAAT----------------------------------------AAATACTAATTT-GAATTTC-CCCCT--------TTCTTTAT-------------CGTTTTAGCAATCGAAC---ACGGAGAAGGATAGCCGGCAGTCGTAAG-CG--------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............................................................................................................................................................................................................................................................................................................................................................................GAAC---ACGGAGAAGGATAGCC.......................2012.002010010
.............................................................................................................................................................................................................................................................................................................................................................................TCGAAC---ACGGAGAAGGATAGC........................2111.001010000
..............................................................................................................................................................................................................................................................................................................................................................................CGAAC---ACGGAGAAGGATAGCCGGCAGT.................2711.001010000
...........................................................................................................................................................................................................................................................................................................................................................................AATCGAAC---ACGGAGAAGGG............................1911.001000010
................................................................................................................................................................................................................................................................................................................................................................................AAC---ACGGAGAAGGATAGCC.......................1911.001000010
...........................................................................................................................................................................................................................................................................................................................................................................AATCGAAC---ACGGAGAAGGATAGCC.......................2411.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................AGAAGGATAGCCGGCAGTCGTAAG-C.........2511.001000010
...............................................................................................................................................................................................................................................................................................................................................................................................GATAGCCGGCAGTCGTAAG-C.........2011.001000001
.................................................................................................................................................................................................................................................................................................................................................................................AC---ACGGAGAAGGATAGCCGGCAGT.................2411.001000010
droBip1
AT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA-AACAAATTATTAT---------ATTTAAACAATCGTATAA--------------------------------------------AAATACTAATTT-GGATTTC-CCTCC--------TTCTTTGT-------------CATTTTAGCAATCGAAC---GCGGAGAAAGATAGCCGGCAGTCGTAAG-CGTGAAGGAGSizeHit CountTotal NormTotal
No Reads
droKik1
AA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT-------AT-----------------AGCAAATA-AACAAATTACTGTTGTATGCCAATAATAAT---CGCACAAT-------------------------------------------AAATACTAATTT-GGATTTT-CCCTC--------TTCTCTCT-------------CATTTTAGCCACTGAACGCAGCGGAGAAGGATAGCAGGCAGTCGTAAG-----------SizeHit CountTotal NormTotal
No Reads
droFic1
AAAACA-----A---------------------------------------------------------------------------------------CAAGCAGC-AAACAGCGAATTAATTGATAA------------------------CATAGAATGGCGAAATGA-------AT-------AT-----------------AGCTAATA-AACAAATTATTCT---------CCTTCAAT---CACACAT--------------------------------------------AAATACTAATTG-GAATTTC-CCCTA--------TTCTCTCT-------------CATTTTAGCCATCGAAT---GCGGAGAAAGACAGCAGGCAGTCGTAAG-C---------SizeHit CountTotal NormTotal
No Reads
droEle1
---------------------------------------------------------------------------------------------------------------CAGCGAATTAATTGATAA------------------------CATAGAATGGCGAAATAA-------AT-------AC-----------------AGCTAATA-AACAAATTATTGT---------ACTTCAAC---CAGACAT--------------------------------------------AAATACTAATTT-GAATTTTCCCCTC--------TTGTCTAT-------------CGTTTTAGCCACTGAAT---GCGGAGAAAGACAGCAGGCAGTCGTAAG-CGTGGAAACGSizeHit CountTotal NormTotal
No Reads
droRho1
TCTAAA-----GCA----------------------------------------------------------------------------------A--AAAAC-----AGCAGCGAATTAATTGATAA------------------------CATAGAATGGCGAAATAA-------AT-------AC-----------------AGCTAATA-AACAAATTATTGT---------GTTTCACC---CAGACAT--------------------------------------------AAATACTAATTT-GAATTTC-CCCTC--------TTCTC--T-------------CTTTTTAGCCACTGAAC---GCCGAGAAAGACAGCAGGCAGTCGTAAG-C---------SizeHit CountTotal NormTotal
No Reads
droBia1
GAGTGT-----CCCCA-------ACAAAAAGTA---------------------------------------------------------GAAACAGAGCAGTCGGAGGAGCCGGGAATTAATTGATAA------------------------CACAGAATGGCGAAATAA-------AC-------AC-----------------TGCTAATA-AACAAATTATTGT---------ACTCTA-T---CGCCCGTAAATA-C-------------------------------------GAATGCTAATGG-GAATTTC--CCTC--------TGCTCTCT-------------C-TTTTAGCCACTGAAC---GCGGAGAAGGACAGCCGGCAGTCGTAAG-CG--------SizeHit CountTotal NormTotal
No Reads
droTak1
AG--------------------------------------------------------------------------------------------CAAAACAATCAGTAGAACAGAGAATTAATTGATAA------------------------CATAGAATGGCGAAATAA-------AC-------AC-----------------AGCTAATA-AACAAATTATTGT---------ACTTCAAT---CACCCATAAATATA-------------------------------------AAATACTAATTG-GAATTTC--CCCC--------TTCTCTCT-------------CTTTTTAGCCACTGAAT---GCGGAGAAAGACAGCAGGCAGTCGTAAG-C-------CGSizeHit CountTotal NormTotal
No Reads
droEug1
A------------------------------------------------------------------------------------------------------------------------ATTGATAA------------------------CACAGAATGGCGAAATAA--------T-------AC-----------------AGCTAATA-AACAAATTATTGT---------ACTTGAAC---TGC------------------------------------------------GAATACTAATTG-GAATTTC-CCCGC---TC--TCTCTCTCT-------------CTTTCTAGCCTCTGAAC---GCGGAGAAGGACAGCAGGCAGTCGTAAG-GG-------GSizeHit CountTotal NormTotal
No Reads
dm3
A---------------------------------------------------------------------------------------------CAAACAAATCAGTGGAACAGGGAACTAATTGATAA------------------------CATAGAATGGCGAAATAA--------T-------AC-----------------AGCTTATA-AACTAATTATTGC---------ATTTCAAT---CGCACATTAAT--A-------------------------------------ATGTACTAATTT-GAATCTT-CCCGC--------TTCTC--T-------------CTTTTTAGCCACAGAAT---GCGGAGAAAGACAGCAGACAGTCGTAAG-CGTGGAAACGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................CACAGAAT---GCGGAGAAAGACAGCAGA.....................2616.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000100000000000000000000000000000000000000000000000000000000000000000000000000010000020000000000000000000100000
...................................................................................................................................................................................................................................................................................................................................................................................................GCAGACAGTCGTAAG-CGTGGA....2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................GCAGACAGTCGTAAG-CGTGGAA...2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................AGACAGTCGTAAG-CGTGGAAA..2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000010000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................T-CCCGC--------TTCTC--T-------------CTTTTTAG...................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................ACAGAAT---GCGGAGAAAGA............................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................AGCAGACAGTCGTAAG-CGTGGAAAC.2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................T---GCGGAGAAAGACAGCAGACAGTCGTA.............2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................AAGACAGCAGACAGTCGTAAG-CGT.......2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................T---GCGGAGAAAGACAGCAGACAGTCGT..............2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..........................................................................................................................................................................................................................................................................................................................................................................CCACAGAAT---GCGGAGAAAGACAGCAGA.....................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGACAGTCGTAAG-CGTGGAAAC.2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................GACAGTCGTAAG-CGTGGAAAC.2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................GACAGTCGTAAG-CGTGGAAA..2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................TAGAATGGCGAAATAA--------T-------AC-----------------AG.............................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGACAGTCGTAAG-CGT.......2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
................................................................................................................................A------------------------CATAGAATGGCGAAATAA--------T-------A.................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................GCGGAGAAAGACAGCAGACAGTCG...............2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................GAGAAAGACAGCAGACAGT.................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
.........................................................................................................GTGGAACAGGGAACTAATT.................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
...................................................................................................................................................................................................................................C---------ATTTCAAT---CGCACATTAAT--A-------------------------------------AT................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................AATTGATAA------------------------CATAGAATGGCGAAAT....................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
...............................................................................................AAACAAATCAGTGGAACAGGG.........................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................ACAGAAT---GCGGAGAAAGACAGCA.......................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................AGACAGTCGTAAG-CGTGGAAAC.2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................AGAAT---GCGGAGAAAGACAG.........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...........................................................................................................GGAACAGGGAACTAATTGAT..............................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................CACAGAAT---GCGGAGAAAGA............................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGACAGTCGTAAG-CGTGGAA...2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................GACAGTCGTAAG-CGTGGA....1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................AACAAATCAGTGGAACAGGGAA.......................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................AAGACAGCAGACAGTCGTAAG-CGTGGA....2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGACAGTCGTAAG-CGTT......2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.............................................................................................................AACAGGGAACTAATTGATAA------------------------CAT.................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................GACAGCAGACAGTCGTAAG-CGTGGA....2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................CAGAAT---GCGGAGAAAGAC...........................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.................................................................................................ACAAATCAGTGGAACAGGGAA.......................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..........................................................................................................................................................................................................................................................................................................................................................................CCACAGAAT---GCGGAGAAAGACAGCAG......................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................AGCAGACAGTCGTAAG-CGT.......1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
............................................................................................................................GATAA------------------------CATAGAATGGCGAAATA...................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................AT---GCGGAGAAAGACAGCAGA.....................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................GAAAGACAGCAGACAGTCGT..............2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................CCCGC--------TTCTC--T-------------CTTTTTAG...................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................CTT-CCCGC--------TTCTC--T-------------CTTTTTAG...................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................GAAAGACAGCAGACAGTCGTAAG-C.........2411.0010000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................GACAGCAGACAGTCGTAAG-CGT.......2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................ACAGAAT---GCGGAGAAAGACAGC........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................T---GCGGAGAAAGACAGCAGAC....................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................................................................................................................................................................................................................................................................................................................................................................................AGCAGACAGTCGTAAG-CGTGGA....2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................CACAGAAT---GCGGAGAAAGACAGCAG......................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................AGCAGACAGTCGTAAG-CGTGGAA...2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGACAGTCGTAAG-CGTGGAAAC.2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................AGTCGTAAG-CGTGGAAAC.1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................CAAATCAGTGGAACAGGGAACT.....................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................GGAGAAAGACAGCAGACAGTCGTAAG-C.........2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................GAAT---GCGGAGAAAGACAGCAGA.....................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................AATTGATAA------------------------CATAGAATGGCG........................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................GGAACTAATTGATAA------------------------CATAGAATGGCG........................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................GCAGACAGTCGTAAG-CG........1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................AT---GCGGAGAAAGACAGCAGAC....................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................GTGGAACAGGGAACTAA...................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................TTT-GAATCTT-CCCGC--------TTCTC--T-------------CTT........................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
A---------------------------------------------------------------------------------------------CAAACAAATCAGTGGAACAGGGAACTAATTGATAA------------------------CATAGAATGGCGAAATAA--------T-------AC-----------------AGCTTATA-AACTAATTATTGC---------ATTTCAAT---CGCACATTAAT--A-------------------------------------ACGTACTAATTT-GAATCTT-CCCGC--------TTCTC--T-------------CTTTTTAGCCACCGAAT---GCGGAGAAAGACAGCAGACAGTCGTAAG-CGTGGAAACGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................................................................................................................................................................................................................................................................................................................................................................................T---GCGGAGAAAGACAGCAGACAGTCGTA.............2712.00200000020000000000
..........................................................................................................................................................................................................................................................................................................................................................................CCACCGAAT---GCGGAGAAAGAC...........................2111.00110000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................AGAAAGACAGCAGACAGT.................1811.00101000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGACAGTCGTAAG-CGTGGAA...2511.00100000001000000000
...........................................................................................................................................................................................................................................................................................................................................................................................GAAAGACAGCAGACAGTCGTAAG-CGTG......2711.00100010000000000000
............................................................................................................................................................................................................................................................................................................................................................................ACCGAAT---GCGGAGAAAGACA..........................2011.00100000100000000000
.............................................................................................................................................................................................................................................................................................................................................................................................AAGACAGCAGACAGT.................1520.50100000000001000000
droSec2
AA-------------------------------------------------------------------------------------------ACAAACAAATCAGTGGAACAGGGAACTAATTGATAA------------------------CATAGAATGGCGAAATAA--------T-------AC-----------------AGCTTATA-AACTAATTATTGC---------ATTTCAAT---CGCACATTAAT--A-------------------------------------ACGTACTAATTT-GAATCTT-CCCGC--------TTCTC--T-------------CTTTTTAGCCACCGAAT---GCGGAGAAAGACAGCAGACAGTCGTAAG-CGTGGAAACGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..................................................................................................................................................................................................................................................................................................................................................................................................AGCAGACAGTCGTAAG-CGT.......1912.0020101
...........................................................................................................................................................................................................................................................................................................................................................................................GAAAGACAGCAGACAGTCGTAAG-CGT.......2612.0020110
............................................................................................................................................................................................................................................................................................................................................................................ACCGAAT---GCGGAGAAAGACAGCAG......................2411.0010001
...........................................................................................................................................................................................................................................................................................................................................................................................GAAAGACAGCAGACAGTCGTAAG-C.........2411.0010010
............................................................................................................................................................................................................................................................................................................................................................................................AAAGACAGCAGACAGTCGTAAG-CGT.......2511.0010100
.................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGACAGTCGTAAG-C.........1811.0010010
droYak3
AA-------------------------------------------------------------------------------------------------CAATCAGTGGAACAGGCAACTAATTGATAA------------------------CATAGAATGGCGAAATCAT------AC-------AT-----------------AGCTTATA-AACAAATTACTGC---------ATTTCAAT---CGCACATTAAT--A-------------------------------------AAATACTAATTT-GAATATT-CCCGC--------TTCTC--T-------------CTTTTTAGCCACTGAAT---GCGGAGAAAGACAGCAGACAGTCGTAAG-C---------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................GAAAGACAGCAGACAGTCGTAAG-C---------2411.00100000010000
..................................................................................................................................................................................................................................................................................................................................................................................T---GCGGAGAAAGACAGCAGACAGTC................2411.00101000000000
droEre2
TCTGAA-----GCACAA------------------------------------------------------------------------------AAAACAATCAGTGGAACAGGCAACTAATTGATAA------------------------CATAGAATGGCGAAATCA--------A-------AC-----------------AGCTAATA-AACAAATTACTGC---------ATTTCAAT---CGCACATTAAT--A-------------------------------------AAGTACTAATTT-GAATTTT-GCCGC--------TTTTCTCT-------------TTTTTTAGCCACTGAAT---GCGGAGAAAGACAGCAGACAGTCGTAAG-CG--------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.............ACAA------------------------------------------------------------------------------AAAACAATCAGTGGAAC.............................................................................................................................................................................................................................................................................................................2111.0010000010

Generated: 05/18/2015 at 06:32 AM