ID:

dps_33

 Coordinate:

4_group3:1941169-1941225 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-20.7 -20.7 -20.3

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GCACACTGTTGCATGTTCTTGGTTCTCTCTGCCTGCGGTTTCCGTAGCTTTCCTTCGATTACATTGCGTGAGCGGCTGAAATAAGTTGATGGAATGCTAGAAGGAGAAAGAGTATGAGGGGAAATGGGAAAGGAACATGAGGAGGATGAGTATGATG
***********************************...(((((.((((.((((.((((((.((((((....)))).)).....)))))).)))).))))...)))))..............************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR902011
testis
 V112
male body		 M040
female body
 M022
male body		 SRR902012
CNS imaginal disc
 SRR902010
ovaries
 GSM444067
head
.................................................................................TAAGTTGATGGAATGCTAGAAGGAG................................................... 25 0 1 257.00 257 178 77 0 0 2 0 0
.................................................................................TAAGTTGATGGAATGCTAGAAGGAGA.................................................. 26 0 1 146.00 146 129 16 0 1 0 0 0
.................................................................................TAAGTTGATGGAATGCTAGAAGGAGAA................................................. 27 0 1 45.00 45 28 16 0 1 0 0 0
.................................................................................TAAGTTGATGGAATGCTAGAAGGA.................................................... 24 0 1 35.00 35 35 0 0 0 0 0 0
.................................................................................TAAGTTGATGGAATGCTAGAAGG..................................................... 23 0 1 30.00 30 23 7 0 0 0 0 0
.................................................................................TAAGTTGATGGAATGCTAGAAGGAGAAA................................................ 28 0 1 21.00 21 6 15 0 0 0 0 0
......................................................................................TGATGGAATGCTAGAAGGAGAAAGA.............................................. 25 0 1 15.00 15 15 0 0 0 0 0 0
................................................................................................................TATGAGGGGAAATGGGAAAGGAAC..................... 24 0 1 10.00 10 9 1 0 0 0 0 0
............................................................................................................................TGGGAAAGGAACATGAGGAGGATG......... 24 0 1 8.00 8 8 0 0 0 0 0 0
.........TGCATGTTCTTGGTTCTCTCTGCC............................................................................................................................ 24 0 1 7.00 7 7 0 0 0 0 0 0
..................................................................................................................TGAGGGGAAATGGGAAAGGAACAT................... 24 0 1 6.00 6 6 0 0 0 0 0 0
............................................................................................................................TGGGAAAGGAACATGAGGAGG............ 21 0 1 6.00 6 6 0 0 0 0 0 0
............................................................................................................................TGGGAAAGGAACATGAGGAGGATGAG....... 26 0 1 6.00 6 6 0 0 0 0 0 0
......................................................................................TGATGGAATGCTAGAAGGAGAAAGAG............................................. 26 0 1 6.00 6 6 0 0 0 0 0 0
.........................................................................................TGGAATGCTAGAAGGAGAAAGAGTA........................................... 25 0 1 6.00 6 6 0 0 0 0 0 0
..................................................................................................................TGAGGGGAAATGGGAAAGGAACATGA................. 26 0 1 6.00 6 5 1 0 0 0 0 0
.................................................................................TAAGTTGATGGAATGCTAGAAG...................................................... 22 0 1 5.00 5 2 2 1 0 0 0 0
..................................................................................AAGTTGATGGAATGCTAGAAGGAG................................................... 24 0 1 5.00 5 0 5 0 0 0 0 0
...................TGGTTCTCTCTGCCTGCGGTTTCC.................................................................................................................. 24 0 1 4.00 4 4 0 0 0 0 0 0
.................................................................................TAAGTTGATGGAATGCTAGAAGGAGT.................................................. 26 1 1 4.00 4 3 1 0 0 0 0 0
............................................................................................................................TGGGAAAGGAACATGAGGAGGA........... 22 0 1 4.00 4 4 0 0 0 0 0 0
......................................................................................TGATGGAATGCTAGAAGGAGAAAG............................................... 24 0 1 3.00 3 3 0 0 0 0 0 0
...........................................................................................................................ATGGGAAAGGAACATGAGGAGGATG......... 25 0 1 3.00 3 3 0 0 0 0 0 0
..................................................................................................................TGAGGGGAAATGGGAAAGGAACA.................... 23 0 1 3.00 3 3 0 0 0 0 0 0
.........................................................................................................................AAATGGGAAAGGAACATGAGGAGGA........... 25 0 1 3.00 3 2 1 0 0 0 0 0
.............................................................................................................GAGTATGAGGGGAAATGGGAAA.......................... 22 0 1 3.00 3 1 1 1 0 0 0 0
......................................................................................TGATGGAATGCTAGAAGGAGAA................................................. 22 0 1 3.00 3 2 1 0 0 0 0 0
...........................................................TACATTGCGTGAGCGGCTGAAATAAGT....................................................................... 27 0 1 3.00 3 3 0 0 0 0 0 0
..................................................................................AAGTTGATGGAATGCTAGAAGGAGAAA................................................ 27 0 1 3.00 3 0 3 0 0 0 0 0
............................................TAGCTTTCCTTCGATTACATTGCG......................................................................................... 24 0 1 3.00 3 3 0 0 0 0 0 0
............................................................................TGAAATAAGTTGATGGAATGCTAGA........................................................ 25 0 1 3.00 3 3 0 0 0 0 0 0
................................................................................................................TATGAGGGGAAATGGGAAAGGAACAT................... 26 0 1 3.00 3 3 0 0 0 0 0 0
..............................................................................................................AGTATGAGGGGAAATGGGAAAGG........................ 23 0 1 3.00 3 3 0 0 0 0 0 0
..................................................................................................................TGAGGGGAAATGGGAAAGGAAC..................... 22 0 1 2.00 2 2 0 0 0 0 0 0
......................................................................................TGATGGAATGCTAGAAGGAGA.................................................. 21 0 1 2.00 2 2 0 0 0 0 0 0
.............................................................................................................GAGTATGAGGGGAAATGGGAAAGG........................ 24 0 1 2.00 2 1 1 0 0 0 0 0
...............................................................................................................GTATGAGGGGAAATGGGAAAGGAAC..................... 25 0 1 2.00 2 2 0 0 0 0 0 0
...............TTCTTGGTTCTCTCTGCCTGCGGTT..................................................................................................................... 25 0 1 2.00 2 2 0 0 0 0 0 0
.................................................................................TAAGTTGATGGAATGCTAGAA....................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0
..............................................................................................TGCTAGAAGGAGAAAGAGTATGAGG...................................... 25 0 1 2.00 2 2 0 0 0 0 0 0
..................................................................................................................TGAGGGGAAATGGGAAAGG........................ 19 0 1 2.00 2 1 1 0 0 0 0 0
..............................................................................................TGCTAGAAGGAGAAAGAGTATGAGGGG.................................... 27 0 1 2.00 2 0 1 1 0 0 0 0
.................................................................................TAAGTTGATGGAATGCTAGA........................................................ 20 0 1 2.00 2 2 0 0 0 0 0 0
.................................................................................TAAGTTGACGGAATGCTAGAAGGA.................................................... 24 1 1 2.00 2 2 0 0 0 0 0 0
..................................................................................................................TGAGGGGAAATGGGAAAGGAACATG.................. 25 0 1 2.00 2 2 0 0 0 0 0 0
...................TGGTTCTCTCTGCCTGCGGTTTC................................................................................................................... 23 0 1 2.00 2 2 0 0 0 0 0 0
......................................................................................TGATGGAATGCTAGAAGGA.................................................... 19 0 1 2.00 2 2 0 0 0 0 0 0
.......GTTGCATGTTCTTGGTTCTCTCTGC............................................................................................................................. 25 0 1 2.00 2 2 0 0 0 0 0 0
...........................................................TACATTGCGTGAGCGGCTGAAATAAG........................................................................ 26 0 1 2.00 2 1 1 0 0 0 0 0
.................................................................................TAAGTTGATGGAATGCTAG......................................................... 19 0 1 2.00 2 1 1 0 0 0 0 0
.............................................................................................................GAGTATGAGGGGAAATGGGA............................ 20 0 1 2.00 2 0 2 0 0 0 0 0
................................................................................................................TATGAGGGGAAATGGGAAAGGAACATG.................. 27 0 1 2.00 2 2 0 0 0 0 0 0
...........................................................................................................AAGAGTATGAGGGGAAATGGGAAA.......................... 24 0 1 1.00 1 0 0 1 0 0 0 0
.....CTGTTGCATGTTCTTGGTTCTCTCC............................................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0
...........CATGTTCTTGGTTCTCTCTGCCTGCG........................................................................................................................ 26 0 1 1.00 1 0 0 1 0 0 0 0
..................................................................................................................TGAGGGGAAATGGGAAAGGAACATGAA................ 27 1 1 1.00 1 1 0 0 0 0 0 0
.................................................................................TAAGTTAATGGAATGCTAGAAGGAG................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0
...CACTGTTGCATGTTCTTGGTTCT................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0
...................................................................................................GAAGGAGAAAGAGTATGAGGGG.................................... 22 0 1 1.00 1 1 0 0 0 0 0 0
......................................TTTCCGTAGCTTTCCTTCGATTCC............................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0
.................................TGCGGTTTCCGTAGCTTTCCTTCGA................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0
................................................................................................................TATGAGGGGAAATGGGAAAGGAACA.................... 25 0 1 1.00 1 1 0 0 0 0 0 0
.................................................................................TAAGTTGATGGAATGCTAGCAGGAG................................................... 25 1 1 1.00 1 0 1 0 0 0 0 0
................TCTTGGTTCTCTCTGCCTGC......................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0
.................................................................................TAAGGTGATGGAATGCTAG......................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0
.................................................................................TAAGTTGATGGAATGCTAGAAGGAA................................................... 25 1 1 1.00 1 0 1 0 0 0 0 0
..................................................TCCTTCGATTACATTGCGTGAGCGGC................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0
.........................................................................................TGGAATGCTAGAAGGAGA.................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................................TGAGGGGAAATGGGAAAGGAA...................... 21 0 1 1.00 1 0 1 0 0 0 0 0
........................................................................................................AGAAAGAGTATGAGGGGAAATG............................... 22 0 1 1.00 1 0 1 0 0 0 0 0
.................................................................................TAAGTTGATGGACTGCTAGAAGGAG................................................... 25 1 1 1.00 1 0 1 0 0 0 0 0
....................................................................................GTTGATGGAATGCTAGAAGGAGAAA................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0
...........................................................................................................AAGAGTATGAGGGGAAATGGGAAAGG........................ 26 0 1 1.00 1 0 1 0 0 0 0 0
..........................................................................................................AAAGAGTATGAGGGGAAATGG.............................. 21 0 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................................................AATGGGAAAGGAACATGAGGAGG............ 23 0 1 1.00 1 1 0 0 0 0 0 0
.................................................................................TAAGTTGATAGAATGCTAGAAGGAG................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0
......TGTTGCATGTTCTTGGTTCTCTC................................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0 0
................................................................................................................TATGAGGGGAAATGGGAAAGGAA...................... 23 0 1 1.00 1 0 1 0 0 0 0 0
....................................................................TGAGCGGCTGAAATAAGTTGATGGAATGC............................................................ 29 0 1 1.00 1 0 1 0 0 0 0 0
................................................TCTCCTTCGATTACATTGCGTGAGCGGC................................................................................. 28 1 1 1.00 1 0 1 0 0 0 0 0
..................................................................................AAGTTGATGGAATGCTAGAAGGA.................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0
.................................................................................TAAGTTGATGGAATGCTAGAAGGAGAAAA............................................... 29 1 1 1.00 1 0 1 0 0 0 0 0
...................................................................................................GAAGGAGAAAGAGTATGAGG...................................... 20 0 1 1.00 1 0 1 0 0 0 0 0
......................................................................................TGATGGAATGCTAGAAGGAGAAAGAGTA........................................... 28 0 1 1.00 1 0 1 0 0 0 0 0
.............................................................................................................GAGTATGAGGGGAAATGGGAAAGGA....................... 25 0 1 1.00 1 0 1 0 0 0 0 0
.........................................................................................TGGAATGCTAGAAGGAGAAAGA.............................................. 22 0 1 1.00 1 1 0 0 0 0 0 0
.................................................................................TAAGTTGATGGAATGGTAGAAGGAG................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0
......................................................TCGATTACATTGCGTGAGCGGCTGA.............................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................AGAGTATGAGGGGAAATGGGAAAGGAA...................... 27 0 1 1.00 1 0 1 0 0 0 0 0
.............................................................................................................GAGTATGAGGGGAAATGGG............................. 19 0 1 1.00 1 0 1 0 0 0 0 0
..........................................................................................................AAAGAGTATGAGGGGAAATG............................... 20 0 1 1.00 1 0 1 0 0 0 0 0
..................................................TCCTTCGATTATATTGCGTGAGCGGC................................................................................. 26 1 1 1.00 1 0 1 0 0 0 0 0
................................................TTTCCTTCGATTACATTGCGTGAGCGG.................................................................................. 27 0 1 1.00 1 0 0 1 0 0 0 0
.................................................................................TAAGTTGATGGAATGCTAGAAGGCGAAA................................................ 28 1 1 1.00 1 0 1 0 0 0 0 0
........................................................................................ATGGAATGCTAGAAGGAGAAAGAG............................................. 24 0 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................................TGGGAAAGGAACATGAGGAGGATGA........ 25 0 1 1.00 1 1 0 0 0 0 0 0
..........................................................TTACATTGCGTGAGCGGCTGA.............................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................TGGAATGCTAGAAGGAGAAAA............................................... 21 1 1 1.00 1 0 1 0 0 0 0 0
.................................................................................TAAGTTGATGGAACGCTAGAAGGAG................................................... 25 1 1 1.00 1 0 1 0 0 0 0 0
.............................................................................................................................GGGAAAGGAACATGAGGAGGATGAG....... 25 0 1 1.00 1 1 0 0 0 0 0 0
.................................................................................TAAGTTGATGGGATGCTAGAAGGAG................................................... 25 1 1 1.00 1 0 1 0 0 0 0 0
................TCTTGGTTCTCTCTGCCTGCGGTC..................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................................TGGGAAAGGAACATGAGG............... 18 0 1 1.00 1 1 0 0 0 0 0 0
.................................................................................CAAGTTGATGGAATGCTAGAAGGAGA.................................................. 26 1 1 1.00 1 1 0 0 0 0 0 0
...............................................................................AATAAGTTGATGGAATGCTAGAAGGA.................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................................TGAGGGGAAATGGGAAAGGAACATCTC................ 27 3 1 1.00 1 0 1 0 0 0 0 0
..............................................................................................TGCTAGAAGGAGAAAGAGTATGAGGG..................................... 26 0 1 1.00 1 0 1 0 0 0 0 0
.................................................................................TAAGTTCATGGAATGCTAGAAGGAG................................................... 25 1 1 1.00 1 0 1 0 0 0 0 0
................................................................TGCGTGAGCGGCTGAAATAAGTTGA.................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0
......................................................................................TGATGGGATGCTAGAAGGAGAAAGA.............................................. 25 1 1 1.00 1 1 0 0 0 0 0 0
...........................................................................................................................ATGGGAAAGGAACATGAGGAGGATGA........ 26 0 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................TTGATGGAATGCTAGAAGGAGAAA................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0
..................................................................................AAGTTGATGGAATGCTAGAAGGAGA.................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0
.................................................TTCCTTCGATTACATTGCGTGAGCGG.................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0
..................................................................................AAGTTGATGGAATGCTAGAAGGAGAA................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0
..........................................................................................................................AATGGGAAAGGAACATGAGGAGGA........... 24 0 1 1.00 1 0 1 0 0 0 0 0
...............................................................................AATAAGTTGATGGAATGCTAGAAGG..................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0
......TGTTGCATGTTCTTGGTTCTCTCTG.............................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................TTGATGGAATGCTAGAAGGAGA.................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................................TGGGAAAGGAACATGAGGAGCATGAG....... 26 1 1 1.00 1 0 1 0 0 0 0 0
........TTGCATGTTCTTGGTTCTCTCTGC............................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0
............................................................ACATTGCGTGAGCGGCTGAAAA........................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
...........................................................TACATTGCGTGAGCGGCTGAAAAAA......................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0
.........TGCATGTTCTTGGTTCTCTCTGC............................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0
........................................TCCGTAGCTTTCCTTCGATTACAT............................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................GATGGAATGCTAGAAGGAGAAAG............................................... 23 0 1 1.00 1 1 0 0 0 0 0 0
.................................TGCGGTTTCCGTAGCTTTCCTTCGATT................................................................................................. 27 0 1 1.00 1 0 0 1 0 0 0 0
............................................................................................................................TGGGAAAGGAACATGAGGAGGAT.......... 23 0 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................................ATGAGGGGAAAGGGGAAAGGAA...................... 22 1 1 1.00 1 0 0 1 0 0 0 0
........................................................GAGTACGTTGCGTGAGCGAC................................................................................. 20 3 2 1.00 2 0 0 2 0 0 0 0
...........................................................TACATTGCGTGAGCGGCTAAAATAAG........................................................................ 26 1 1 1.00 1 0 1 0 0 0 0 0
.........................................................................................................................AAATGGGAAAGGAACATGAGGAG............. 23 0 1 1.00 1 1 0 0 0 0 0 0
..................................................................................TAAGTGATGGAATGCTAGAAGGAGA.................................................. 25 3 1 1.00 1 0 1 0 0 0 0 0
................TCTTGGTTCTCTCTGCCTGCGGTT..................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................TTGATGGAATGCTAGAAGGAGAAAG............................................... 25 0 1 1.00 1 1 0 0 0 0 0 0
.................................................................................TAAGTTGATGCAATGCTAGAAGGAG................................................... 25 1 1 1.00 1 0 1 0 0 0 0 0
................................................................................................................TATGAGGGGAAATGGGAAAG......................... 20 0 1 1.00 1 0 1 0 0 0 0 0
........................................TCCGTAGCTTTCCTTCGATTA................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0
...................................................................................................................................GGAACATGAGGAGGATGAGTATGA.. 24 0 1 1.00 1 0 0 0 0 0 1 0
...................................................................................................................GAGGGGAAATGGGAAAGGAACATGA................. 25 0 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................................TGAGGGAAATGGGAAAGGAACATG.................. 24 3 2 0.50 1 1 0 0 0 0 0 0
...........................................................................................................AAGAGTATGAGGGGAAATTT.............................. 20 2 3 0.33 1 0 1 0 0 0 0 0
....................................................................................................................AGGGGAAATGGGAAGGGAA...................... 19 1 4 0.25 1 0 0 1 0 0 0 0
...................................................................................................................GATGGGTAATGGGAAAGGTAC..................... 21 3 5 0.20 1 0 1 0 0 0 0 0
..................................................................................................................GGAGGGGAAATGGTAAAGG........................ 19 2 8 0.13 1 0 0 0 0 0 0 1
.........................................................AGTACGTTGCGTGAGCGAC................................................................................. 19 3 9 0.11 1 0 0 1 0 0 0 0

Anti-sense strand reads

CGTGTGACAACGTACAAGAACCAAGAGAGACGGACGCCAAAGGCATCGAAAGGAAGCTAATGTAACGCACTCGCCGACTTTATTCAACTACCTTACGATCTTCCTCTTTCTCATACTCCCCTTTACCCTTTCCTTGTACTCCTCCTACTCATACTAC
************************************...(((((.((((.((((.((((((.((((((....)))).)).....)))))).)))).))))...)))))..............*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902011
testis
 M040
female body
 GSM343916
embryo
 GSM444067
head
..........CGTACAAGAACCAAGAGAGACGGAC.......................................................................................................................... 25 0 1 3.00 3 3 0 0 0
CGTGTGACAACGTACAAGAACCA...................................................................................................................................... 23 0 1 2.00 2 2 0 0 0
...........GTACAAGAACCAAGAGAGACGGAC.......................................................................................................................... 24 0 1 2.00 2 2 0 0 0
...GTGACAACGTACAAGAACCAAGAGAG................................................................................................................................ 26 0 1 2.00 2 2 0 0 0
...............................................GAAAGGAAGCTAATGTAACGC......................................................................................... 21 0 1 1.00 1 1 0 0 0
..................................CGCCAAAGGCGTCGAAAG......................................................................................................... 18 1 1 1.00 1 0 1 0 0
.....................CAAGAGAGACGGACGCCAAAGGCATC.............................................................................................................. 26 0 1 1.00 1 1 0 0 0
.................................................................CGCACTCGCCGACTTCGTGCAA...................................................................... 22 3 3 0.33 1 0 0 1 0
.........................................GTCGTCGAAAGAAAGCTAATGT.............................................................................................. 22 3 4 0.25 1 0 0 0 1
....................CAAAGACAGACGGACGCCCA..................................................................................................................... 20 3 20 0.05 1 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 4_group3:1941119-1941275 - dps_33 GCACACTGTTGCATGTTCTTGGTTCTCTCTGCCTGCGGTTTCCGTAGCTTTCCTTCGATTACATTGCGTGAGCGGCTGAAATAAGTTGA-TGGAATGCTAGAAGGAGAAAGAGTATGAGGGGAAATGGGAAAGGAACATGAGGAGGATGAGTAT-GATG
droPer2 scaffold_1:3414669-3414827 - GCACACTGTTGCATGTTCTTGGTTCTCTCTGCCTGCGGTTTCCGTAGCTCTCCTTCGATTACATTGCGTGAGCGGCTGAAAGAAGTTAAGTGGAATGCTAGAAGGGGGAAGAGTATGAGGGGAAAGGGGAAAGGAACATGAGGAGGATGCTTATAGATG
droVir3 scaffold_8936:114-159 - ACTCTCTGTC---------TGCCTCTCTCTGCCT-CTCTGTCTGTCTCTCTCTCTC-------------------------------------------------------------------------------------------------------
droGri2 scaffold_14822:558141-558186 - A---------------------------------------------------------------------------------------------------GAAGAAGAAAGAGGGAGAGAGAGAAAGGGAGAGGGAGAGAAAGAG--------------
droEug1 scf7180000409095:508426-508456 + TCTCTCTGTCGCACGTCCCTTTTTTTCTGTG--------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4770:9386904-9386930 - ACG--TCGCTGCCTGGCGTTGCCTCGCTC----------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
GCACACTGTTGCATGTTCTTGGTTCTCTCTGCCTGCGGTTTCCGTAGCTTTCCTTCGATTACATTGCGTGAGCGGCTGAAATAAGTTGA-TGGAATGCTAGAAGGAGAAAGAGTATGAGGGGAAATGGGAAAGGAACATGAGGAGGATGAGTAT-GATGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................................................................................TAAGTTGA-TGGAATGCTAGAAGGAG....................................................251257.002570000007701782
.................................................................................TAAGTTGA-TGGAATGCTAGAAGGAGA...................................................261146.001461000001601290
.................................................................................TAAGTTGA-TGGAATGCTAGAAGGAGAA..................................................27145.0045100000160280
.................................................................................TAAGTTGA-TGGAATGCTAGAAGGA.....................................................24135.003500000000350
.................................................................................TAAGTTGA-TGGAATGCTAGAAGG......................................................23130.003000000070230
.................................................................................TAAGTTGA-TGGAATGCTAGAAGGAGAAA.................................................28121.002100000015060
......................................................................................TGA-TGGAATGCTAGAAGGAGAAAGA...............................................25115.001500000000150
.................................................................................................................TATGAGGGGAAATGGGAAAGGAAC......................24110.00100000001090
.............................................................................................................................TGGGAAAGGAACATGAGGAGGATG..........2418.0080000000080
.........TGCATGTTCTTGGTTCTCTCTGCC..............................................................................................................................2417.0070000000070
...................................................................................................................TGAGGGGAAATGGGAAAGGAACAT....................2416.0060000000060
.............................................................................................................................TGGGAAAGGAACATGAGGAGG.............2116.0060000000060
.............................................................................................................................TGGGAAAGGAACATGAGGAGGATGAG........2616.0060000000060
......................................................................................TGA-TGGAATGCTAGAAGGAGAAAGAG..............................................2616.0060000000060
..........................................................................................TGGAATGCTAGAAGGAGAAAGAGTA............................................2516.0060000000060
...................................................................................................................TGAGGGGAAATGGGAAAGGAACATGA..................2616.0060000001050
.................................................................................TAAGTTGA-TGGAATGCTAGAAG.......................................................2215.0050100002020
..................................................................................AAGTTGA-TGGAATGCTAGAAGGAG....................................................2415.0050000005000
...................TGGTTCTCTCTGCCTGCGGTTTCC....................................................................................................................2414.0040000000040
.................................................................................TAAGTTGA-TGGAATGCTAGAAGGAGT...................................................2614.0040000001030
.............................................................................................................................TGGGAAAGGAACATGAGGAGGA............2214.0040000000040
......................................................................................TGA-TGGAATGCTAGAAGGAGAAAG................................................2413.0030000000030
............................................................................................................................ATGGGAAAGGAACATGAGGAGGATG..........2513.0030000000030
...................................................................................................................TGAGGGGAAATGGGAAAGGAACA.....................2313.0030000000030
..........................................................................................................................AAATGGGAAAGGAACATGAGGAGGA............2513.0030000001020
..............................................................................................................GAGTATGAGGGGAAATGGGAAA...........................2213.0030100001010
......................................................................................TGA-TGGAATGCTAGAAGGAGAA..................................................2213.0030000001020
...........................................................TACATTGCGTGAGCGGCTGAAATAAGT.........................................................................2713.0030000000030
..................................................................................AAGTTGA-TGGAATGCTAGAAGGAGAAA.................................................2713.0030000003000
............................................TAGCTTTCCTTCGATTACATTGCG...........................................................................................2413.0030000000030
............................................................................TGAAATAAGTTGA-TGGAATGCTAGA.........................................................2513.0030000000030
.................................................................................................................TATGAGGGGAAATGGGAAAGGAACAT....................2613.0030000000030
...............................................................................................................AGTATGAGGGGAAATGGGAAAGG.........................2313.0030000000030
...................................................................................................................TGAGGGGAAATGGGAAAGGAAC......................2212.0020000000020
......................................................................................TGA-TGGAATGCTAGAAGGAGA...................................................2112.0020000000020
..............................................................................................................GAGTATGAGGGGAAATGGGAAAGG.........................2412.0020000001010
................................................................................................................GTATGAGGGGAAATGGGAAAGGAAC......................2512.0020000000020
...............TTCTTGGTTCTCTCTGCCTGCGGTT.......................................................................................................................2512.0020000000020
.................................................................................TAAGTTGA-TGGAATGCTAGAA........................................................2112.0020000000020
...............................................................................................TGCTAGAAGGAGAAAGAGTATGAGG.......................................2512.0020000000020
...................................................................................................................TGAGGGGAAATGGGAAAGG.........................1912.0020000001010
...............................................................................................TGCTAGAAGGAGAAAGAGTATGAGGGG.....................................2712.0020100001000
.................................................................................TAAGTTGA-TGGAATGCTAGA.........................................................2012.0020000000020
...................................................................................................................TGAGGGGAAATGGGAAAGGAACATG...................2512.0020000000020
...................TGGTTCTCTCTGCCTGCGGTTTC.....................................................................................................................2312.0020000000020
......................................................................................TGA-TGGAATGCTAGAAGGA.....................................................1912.0020000000020
.......GTTGCATGTTCTTGGTTCTCTCTGC...............................................................................................................................2512.0020000000020
...........................................................TACATTGCGTGAGCGGCTGAAATAAG..........................................................................2612.0020000001010
.................................................................................TAAGTTGA-TGGAATGCTAG..........................................................1912.0020000001010
..............................................................................................................GAGTATGAGGGGAAATGGGA.............................2012.0020000002000
.................................................................................................................TATGAGGGGAAATGGGAAAGGAACATG...................2712.0020000000020
............................................................................................................AAGAGTATGAGGGGAAATGGGAAA...........................2411.0010100000000
.....CTGTTGCATGTTCTTGGTTCTCTCC.................................................................................................................................2511.0010000000010
...........CATGTTCTTGGTTCTCTCTGCCTGCG..........................................................................................................................2611.0010100000000
...................................................................................................................TGAGGGGAAATGGGAAAGGAACATGAA.................2711.0010000000010
...CACTGTTGCATGTTCTTGGTTCT.....................................................................................................................................2311.0010000001000
....................................................................................................GAAGGAGAAAGAGTATGAGGGG.....................................2211.0010000000010
.................................TGCGGTTTCCGTAGCTTTCCTTCGA.....................................................................................................2511.0010000000010
.................................................................................................................TATGAGGGGAAATGGGAAAGGAACA.....................2511.0010000000010
................TCTTGGTTCTCTCTGCCTGC...........................................................................................................................2011.0010100000000
.................................................................................TAAGTTGA-TGGAATGCTAGAAGGAA....................................................2511.0010000001000
..................................................TCCTTCGATTACATTGCGTGAGCGGC...................................................................................2611.0010000001000
..........................................................................................TGGAATGCTAGAAGGAGA...................................................1811.0010000000010
...................................................................................................................TGAGGGGAAATGGGAAAGGAA.......................2111.0010000001000
.........................................................................................................AGAAAGAGTATGAGGGGAAATG................................2211.0010000001000
....................................................................................GTTGA-TGGAATGCTAGAAGGAGAAA.................................................2511.0010000000010
............................................................................................................AAGAGTATGAGGGGAAATGGGAAAGG.........................2611.0010000001000
...........................................................................................................AAAGAGTATGAGGGGAAATGG...............................2111.0010000000010
...........................................................................................................................AATGGGAAAGGAACATGAGGAGG.............2311.0010000000010
......TGTTGCATGTTCTTGGTTCTCTC..................................................................................................................................2311.0010000000010
.................................................................................................................TATGAGGGGAAATGGGAAAGGAA.......................2311.0010000001000
....................................................................TGAGCGGCTGAAATAAGTTGA-TGGAATGC.............................................................2911.0010000001000
..................................................................................AAGTTGA-TGGAATGCTAGAAGGA.....................................................2311.0010000000010
.................................................................................TAAGTTGA-TGGAATGCTAGAAGGAGAAAA................................................2911.0010000001000
....................................................................................................GAAGGAGAAAGAGTATGAGG.......................................2011.0010000001000
......................................................................................TGA-TGGAATGCTAGAAGGAGAAAGAGTA............................................2811.0010000001000
..............................................................................................................GAGTATGAGGGGAAATGGGAAAGGA........................2511.0010000001000
..........................................................................................TGGAATGCTAGAAGGAGAAAGA...............................................2211.0010000000010
......................................................TCGATTACATTGCGTGAGCGGCTGA................................................................................2511.0010000000010
.............................................................................................................AGAGTATGAGGGGAAATGGGAAAGGAA.......................2711.0010000001000
..............................................................................................................GAGTATGAGGGGAAATGGG..............................1911.0010000001000
...........................................................................................................AAAGAGTATGAGGGGAAATG................................2011.0010000001000
................................................TTTCCTTCGATTACATTGCGTGAGCGG....................................................................................2711.0010100000000
........................................................................................A-TGGAATGCTAGAAGGAGAAAGAG..............................................2411.0010000000010
.............................................................................................................................TGGGAAAGGAACATGAGGAGGATGA.........2511.0010000000010
..........................................................TTACATTGCGTGAGCGGCTGA................................................................................2111.0010000000010
..........................................................................................TGGAATGCTAGAAGGAGAAAA................................................2111.0010000001000
..............................................................................................................................GGGAAAGGAACATGAGGAGGATGAG........2511.0010000000010
................TCTTGGTTCTCTCTGCCTGCGGTC.......................................................................................................................2411.0010000000010
.............................................................................................................................TGGGAAAGGAACATGAGG................1811.0010000000010
...............................................................................AATAAGTTGA-TGGAATGCTAGAAGGA.....................................................2611.0010000000010
...................................................................................................................TGAGGGGAAATGGGAAAGGAACATCTC.................2711.0010000001000
...............................................................................................TGCTAGAAGGAGAAAGAGTATGAGGG......................................2611.0010000001000
................................................................TGCGTGAGCGGCTGAAATAAGTTGA-.....................................................................2511.0010000001000
............................................................................................................................ATGGGAAAGGAACATGAGGAGGATGA.........2611.0010000000010
.....................................................................................TTGA-TGGAATGCTAGAAGGAGAAA.................................................2411.0010000000010
..................................................................................AAGTTGA-TGGAATGCTAGAAGGAGA...................................................2511.0010000000010
.................................................TTCCTTCGATTACATTGCGTGAGCGG....................................................................................2611.0010000000010
..................................................................................AAGTTGA-TGGAATGCTAGAAGGAGAA..................................................2611.0010000001000
...........................................................................................................................AATGGGAAAGGAACATGAGGAGGA............2411.0010000001000
...............................................................................AATAAGTTGA-TGGAATGCTAGAAGG......................................................2511.0010000000010
......TGTTGCATGTTCTTGGTTCTCTCTG................................................................................................................................2511.0010000000010
.....................................................................................TTGA-TGGAATGCTAGAAGGAGA...................................................2211.0010000000010
........TTGCATGTTCTTGGTTCTCTCTGC...............................................................................................................................2411.0010000000010
............................................................ACATTGCGTGAGCGGCTGAAAA.............................................................................2211.0010000000010
.........TGCATGTTCTTGGTTCTCTCTGC...............................................................................................................................2311.0010000000010
........................................TCCGTAGCTTTCCTTCGATTACAT...............................................................................................2411.0010000000010
.......................................................................................GA-TGGAATGCTAGAAGGAGAAAG................................................2311.0010000000010
.................................TGCGGTTTCCGTAGCTTTCCTTCGATT...................................................................................................2711.0010100000000
.............................................................................................................................TGGGAAAGGAACATGAGGAGGAT...........2311.0010000000010
..........................................................................................................................AAATGGGAAAGGAACATGAGGAG..............2311.0010000000010
................TCTTGGTTCTCTCTGCCTGCGGTT.......................................................................................................................2411.0010000000010
.....................................................................................TTGA-TGGAATGCTAGAAGGAGAAAG................................................2511.0010000000010
.................................................................................................................TATGAGGGGAAATGGGAAAG..........................2011.0010000001000
........................................TCCGTAGCTTTCCTTCGATTA..................................................................................................2111.0010000001000
....................................................................................................................................GGAACATGAGGAGGATGAGTAT-GA..2411.0010000000100
....................................................................................................................GAGGGGAAATGGGAAAGGAACATGA..................2511.0010000000010
............................................................................................................AAGAGTATGAGGGGAAATTT...............................2030.3310000001000
droPer2
GCACACTGTTGCATGTTCTTGGTTCTCTCTGCCTGCGGTTTCCGTAGCTCTCCTTCGATTACATTGCGTGAGCGGCTGAAAGAAGTTAAGTGGAATGCTAGAAGGGGGAAGAGTATGAGGGGAAAGGGGAAAGGAACATGAGGAGGATGCTTATAGATGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................................................TACATTGCGTGAGCGGCTGAAAGAAG..........................................................................2613.003000003
................................................................................................................GTATGAGGGGAAAGGGGA.............................1811.001000001
....................................................................................................GAAGGGGGAAGAGTATGAGG.......................................2011.001000001
...................................................................................................................TGAGGGGAAAGGGGAAAGGAA.......................2111.001010000
droVir3
ACTCTCTGTC---------TGCCTCTCTCTGCCT-CTCTGTCTGTCTCTCTCTCTC-------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droGri2
A---------------------------------------------------------------------------------------------------GAAGAAGAAAGAGGGAGAGAGAGAAAGGGAGAGGGAGAGAAAGAG--------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droEug1
TCTCTCTGTCGCACGTCCCTTTTTTTCTGTG--------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEre2
ACG--TCGCTGCCTGGCGTTGCCTCGCTC----------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/17/2015 at 08:01 PM