ID:

dps_3285

 Coordinate:

XR_group8:3431894-3432111 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-41.0 -41.0 -40.98

Flybase annnotation

CDS [Dpse\GA21189-cds]; exon [dpse_GLEANR_8428:1]; CDS [Dpse\GA21189-cds]; exon [dpse_GLEANR_8428:2]; intron [Dpse\GA21189-in]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GTATATTGCAGAAAACCAAAGATAAATCAACGCAAAAAGAGCAGGATGAGGTACTTATCCCTTCCGTTTAATCATTCAAGAGCCTGAACTTTGGCATTTTAAAGATTGACGCCAGCGCCTGGGCCTGTGTCTGGGTCTGGGCCTGCGCCCCGACACCCCAAAAACCCCAAACTAATCTACTTCTCGGTTCACTTCTTTTCTTCCCACTTCTTTACGGTTTATTTACATGTCGCCCACGCACCCACGTGTATCCCATCGCTTATCCCAGATTCTGCTGCAGCCCTTCACATACATACAACAGATTCCTGGCAAACAATT
**************************************************.............((((((((((.((.(((.(((........))).))).)).)))))).(((((.((((((((((......))))))))))))).)).((((..............................))))..........................))))......(((((((.((....))....)))))))..................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 V112
male body		 M059
embryo
 GSM343916
embryo
 M022
male body
.....................................AGAGGAGGGTGAGGTACT....................................................................................................................................................................................................................................................................... 18 2 6 10.67 64 63 1 0 0 0
.....................................AGAGGAGGGTGAGGTACTT...................................................................................................................................................................................................................................................................... 19 2 2 9.50 19 15 4 0 0 0
....................................AAGAGGAGGGTGAGGTACT....................................................................................................................................................................................................................................................................... 19 2 3 8.00 24 17 7 0 0 0
................................................................................................................................................................................................................................................................................................ATACATACAACAGATTCCTGGCAAACA... 27 0 1 1.00 1 1 0 0 0 0
.........................................................................................................................................................................................................................TTTATTTACATGTAGCCCA.................................................................................. 19 1 1 1.00 1 1 0 0 0 0
...........................CAACGCAAAAGGAGCAGGACG.............................................................................................................................................................................................................................................................................. 21 2 1 1.00 1 1 0 0 0 0
.TATATTGCAGAAAACCAAAGATAAATC.................................................................................................................................................................................................................................................................................................. 27 0 1 1.00 1 0 0 1 0 0
...............................GCAAAAAGAGCAGGATGAGATTCT....................................................................................................................................................................................................................................................................... 24 2 1 1.00 1 1 0 0 0 0
.............................................................................................................................................................CCAAAAACCCCAAACTAATCT............................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0
.....................................AGAGGAGGGTGAGGTACTTT..................................................................................................................................................................................................................................................................... 20 3 6 0.83 5 5 0 0 0 0
......................................................................................................................................................................CGAAACCAATCTACTTCGC..................................................................................................................................... 19 3 20 0.55 11 11 0 0 0 0
.....................................AGAGGAGGGTGAGGTACTTTT.................................................................................................................................................................................................................................................................... 21 3 2 0.50 1 1 0 0 0 0
......................................................................................................................................................................................................TCTTCGCACTTCTTTCCGG..................................................................................................... 19 2 2 0.50 1 0 0 0 1 0
......................................GAACAGGATGACATACTTATC................................................................................................................................................................................................................................................................... 21 3 3 0.33 1 0 0 0 1 0
....................................AAGAGGAGGGTGAGGTAC........................................................................................................................................................................................................................................................................ 18 2 6 0.33 2 2 0 0 0 0
....................................................................................................................................................CCCAACACCCGAAAAACCCCCAAC.................................................................................................................................................. 24 3 3 0.33 1 0 1 0 0 0
........................................................................................................................................................................AAACCAATCTACTTCGCCGT.................................................................................................................................. 20 3 6 0.33 2 2 0 0 0 0
...................................CAAGAGGAGGGTGAGGTACTT...................................................................................................................................................................................................................................................................... 21 3 3 0.33 1 1 0 0 0 0
..................................................................................................................................................................................................................................................................CTTATCCCGGATTCTGACGC........................................ 20 3 5 0.20 1 0 0 0 0 1
............................................................................................................................................................................................................................................................................ATTCTGATGCAGGACTTCAC.............................. 20 3 5 0.20 1 1 0 0 0 0
......................................................................................................................................................................CGAAACCAATCTACTTCGCG.................................................................................................................................... 20 3 10 0.10 1 1 0 0 0 0
..........AAAAACCAAAGATAAATAAACC.............................................................................................................................................................................................................................................................................................. 22 3 20 0.05 1 0 0 1 0 0

Anti-sense strand reads

CATATAACGTCTTTTGGTTTCTATTTAGTTGCGTTTTTCTCGTCCTACTCCATGAATAGGGAAGGCAAATTAGTAAGTTCTCGGACTTGAAACCGTAAAATTTCTAACTGCGGTCGCGGACCCGGACACAGACCCAGACCCGGACGCGGGGCTGTGGGGTTTTTGGGGTTTGATTAGATGAAGAGCCAAGTGAAGAAAAGAAGGGTGAAGAAATGCCAAATAAATGTACAGCGGGTGCGTGGGTGCACATAGGGTAGCGAATAGGGTCTAAGACGACGTCGGGAAGTGTATGTATGTTGTCTAAGGACCGTTTGTTAA
**************************************************.............((((((((((.((.(((.(((........))).))).)).)))))).(((((.((((((((((......))))))))))))).)).((((..............................))))..........................))))......(((((((.((....))....)))))))..................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 V112
male body		 GSM444067
head
 SRR902012
CNS imaginal disc
..................................................CATGGATAGGGAAGGCAAATT....................................................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0
.........................................................................................................................................................................................................................................................................GTCTAAGACGACGTCGGGAA................................. 20 0 1 1.00 1 1 0 0 0
......................................................................................................................................................................................................................................................................................TCGGGAAGTGTATGTATGTT.................... 20 0 1 1.00 1 0 1 0 0
............................................................................................................................................................GGGTTTTTGGGGTTTGATTAG............................................................................................................................................. 21 0 1 1.00 1 1 0 0 0
....................................TTCTCCTCCCACTCCATG........................................................................................................................................................................................................................................................................ 18 2 6 0.83 5 5 0 0 0
...............................................................................................................................................ACGCGGCGCTATGGGGTT............................................................................................................................................................. 18 2 2 0.50 1 0 0 1 0
..................................................................................................................................................................TTGGGGTATGAATAGTTGA......................................................................................................................................... 19 3 20 0.35 7 7 0 0 0
....................................TTCTCCTCCCACTCCATGA....................................................................................................................................................................................................................................................................... 19 2 3 0.33 1 1 0 0 0
......................................................................................................................................................................GCTTTGGTTAGATGAAGCG..................................................................................................................................... 19 3 20 0.30 6 1 5 0 0
.....................................TCTCCTCCCACTCCATGA....................................................................................................................................................................................................................................................................... 18 2 6 0.17 1 1 0 0 0
..................................................................................................................................................................................................GAAGAGAAGGGTGAAGAA.......................................................................................................... 18 1 6 0.17 1 1 0 0 0
......................................................................................................................................................................................................................................................................................TCGGGAATTGTATGAATGC..................... 19 3 10 0.10 1 1 0 0 0
..............................................................................................................................................................................................................................................................TCGCGAATAGGGTCTCAGGC............................................ 20 3 10 0.10 1 0 0 0 1
...............................................................................................................................................AAGCGGGGATATGGGGTTT............................................................................................................................................................ 19 3 20 0.05 1 1 0 0 0
.......................................................................................................................................................CTGTGGGGTTTAAGGGCTT.................................................................................................................................................... 19 3 20 0.05 1 0 1 0 0
.......................................................................................................................................................................................................................................................................................CGGGAATTGTATGAATGC..................... 18 3 20 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 XR_group8:3431844-3432161 + dps_3285 GTATATTGCAGAAAACCAAAGATAAATCAACGCAAAAAGAGCAGGATGAGGTACTTATCCCTTCCGTTTAATCATTCA-AGAGC------------------------------------------------C-----T--GAACTTTGGCATTTT-AAAGATTGA-CGCC-----------------------A--GCGCCTGGGCCTGTGTCTGGGTCTGGGCCTGCGCCCCG----ACAC-----------------------------------CCCA--AAA-A---C-CCCAAACTAATCTACT-------------------------------------------------------TCTCGGTTCACTTC------------------------------------------T----------T-T-------------------------------TC------------TTCCCAC-----T--TC----T-TT-ACGGTTTATTTACATG-----------TCGCCCACGCACCCACGTGTATCCCATC--G----------------------------------------------------------------------CTTATCCCAGATTCTGCTGCAGCCCTTCACATACATACAACAGATTCCTGGCAAACAATT
droPer2 scaffold_65:236291-236608 + GTATATTGCAGAAAACCAAAGATAAATCAACGCAAAAAGAGCAGGATGAGGTACTTATCCCTTCCGTTTAATCATTCA-AGAGC------------------------------------------------C-----T--GAACTTTGGCATTTT-TAAGATTGA-CGCC-----------------------A--GCGCCTGGGCCTGTGTCTGGGTCTGGGCCTGCGCCCCG----ACAC-----------------------------------CCCA--AAA-A---C-CCCAAACTAATCTACT-------------------------------------------------------TCTCGGTTCACTTC------------------------------------------T----------T-T-------------------------------TC------------TTCCCAC-----T--TC----T-TT-ACGGTTTATTTACATG-----------TCGCCCACGCACCCACGTGTATCCCATC--G----------------------------------------------------------------------CTTATCCCAGATTCTGCTGCAGCCCTTCACATACATACAACAGATTCCTGGCAAACAATT
droWil2 scf2_1100000004511:9205496-9205766 + GCATATTGCAGAAAACCAAAGATAAATCCACGCAAAAGGAGCAGGATGAGGTAAGTG--------------------------C--------GTG-TGTGGGTGTGCGAGTGCCAGTGTGTGT-GTAAGCCAAA----T--GAACTTTGACATTTC-TC------------------------------------------------------------------------------------------------------------------------------AAAA---C-TC-CAACTCCC-------------------------CTAACC---------------------------------------------------------------A---------------------------------CT----------------------------TCATT------------A--------------T---TCC-TT-GCGCTTTATTTACATG-----------TCACCTTCAATCTGTTACCC--------CCCCTCTCAT---------------------------------------CATT----A------TTATCATCGGCCATA-CAGATACTTTTGCAGCCCTTTTCGTATATCCAAGAAATTCCTGGCAAACAATT
droVir3 scaffold_13049:7423160-7423435 + dvi_18818 GCATACTGCAAAAAACCAAAGATAAATCAACGCAAAAGGAGCAGGACGAGGTAGCCATCCCA-CC---CA-----------AGCCCA-AAACCAGTTAACCGTTAACCAGTGGCAGCG--------CTGCCACT----T--GATCTTTGACATTTT-TGAG-C-TG-CC----GTCTGTTTGCT-----------------------------------------------------GGA--CTT---------------------------------------------AAT-CG-AA----------------------------GCACTAACC----------------------------TTCTGA--------------------------------------------------------------------------------------------------------------------G-----T--TTATTTT-TT-GTGGCTTATTTACATGCTCTGTTGACATCGCCCACGCAC-------------------------------------------------------------------------------------------------AGATCTTGTTGCAGCCCTTTACGTACATACAGCAAATACCTGGCAAACAGTT
droMoj3 scaffold_6680:5678423-5678722 + dmo_2365 GAATATTGCAAAAAACCAAAGATAAATCAACTCAAAGGGAACAGGACGAGGTACACAGCCCA-CC---CA-----------ATCCCAAAAACCAGTTAACCGTTAACCAGTAGCAGCG--------ATGTCATA----TGCGAACTTTGACATTTT-TGAG-C-TG-CCTGCCGCCTGTTTGCT------------G-------------------------A--------------------------------------------------------CCA--AA--A---C-CC-GAAC-----------------------C-----GTAACC----------------------------TTCTGCGT------------------------TT-AC-----------------T-------------TCA-------------------------------TT------------AATTTTT-----T--T---TTT-TT-GTGGCTTATTTACATGC--CGTTGACATCGCCCACGCACAAA---------------------------------------------------------------------------------------------CAGATTCTGCTGCAGCCCTTTACGTACATACAGCAAATACCTGGCAAACAGTT
droGri2 scaffold_15110:5453107-5453454 - GCATACTGCAAAAAACCAAAGATAAATCAACGCAAAAGGAGCAGGACGAGGTAGCCAACCCA-CTTGAAA---------AGAACCCA-CAACCAGTTAACTGTTAACCAGCAACAGCG-----ACGATGTCACT----T--GAACTTTGACATTTT-TGAA-CTGT-CGTC-----TGTCTGTTGGTTGGTTGGCTG-------------------------G--------------------------------------------------------CCA--AA--A---G-CC-TAAA-----------------------CGAGCACTAACCCTTTGCGTTTACTTCTTTTTTATTTTTG------------TTT-------------------------------------------------------T-------------------------------TT------------G-----T-----T--TT--ATT-TT-GTGGCTTATTTACATGA--TGTTGATATCGCCCACGCACACACACACACACCAAC--A------------------------------------------------------------------------CACA-CAGATTCTGCTGCAGCCCTTTACGTACATACAGCAAATACCTGGCAAACAGTT
droAna3 scaffold_13337:3508282-3508595 - GCATACTACAAAAAACCAAAGATAAATCAACGCAGAAGGAGCAGGATGAGGTACTTATCCCA-CGGCTTAATCCTTCC-GGACC------------------------------------------------CCA---T--GAACTTTGGCATTTTGAAAG-T-TGTCGC---------------------------------------------------------------------------------------------------------------------------------GCTAACCAGCT-------------------------------------------------TCTTCTTCTC-------TC----------------CTCT-ACTCTCTTTAT---CCTCC---T----------T-TTTGTTC------------------------ATC---AACTTCCTGCGCCCAC-----T-------TT-TTGGGGCTTTATTTACATG-----------TGGCCCACGCACCACT-------------------------------GCTC--CTACTGCTACC----ACTTCCCCCC---ACCTT------T-------GGCTATCCCAGATTCTGCTGCAGCCCTTCACATACATACAACAGATTCCTGGGAAGCAATT
droBip1 scf7180000396387:98599-98929 + GCATACTACAAAAAACCAAAGATAAATCAACGCAAAAGGAGCAGGATGAGGTACTTATCCCA-CGGCTTAATCCTTCC-GGACC------------------------------------------------CC----T--GAACTTTGCCATTTG-AAAG-T-TGTCGC---------------------------------------------------------------------------------------------------------------------------------GCTAACCAG----------GC---------------------------------------TCTTCTTCTCC------TCC---------TTCTCTGTCTCTCTCTCTCTGTCTTCCTCCT-------------TCT----------------------------TCATTATTAACTTCCTGCGCCCAC-----T-------TT-TT-GGGTTTTATTTACATG-----------TGGCCCACGCACCACT-------------------------------GCTT--C-ACTGCT-CCACCCACT-CCACCCATCACTCA------TGGTTG--GGGTATC-CAGATTCTGCTGCAGCCCTTCACATACATACAACAGATTCCTGGCAAGCAATT
droKik1 scf7180000302711:86897-87250 + GCATACTGCAGAAAACCAAAGATAAATCAACGCAAAAGGAGCAGGATGAGGTACGTGTCCCG-CGGCTTAATCCTTCC-GGACC------------------------------------------------CC----T--GAACTCTGACATTTG-GAGG-T-GG-CGAG-----------------------------------------------------------------GCGA--CACCAGGGCAAAGTCGCCCTCGCCCTCGGCACCCTCCCCG--AAAAA---C-AC-TAACTAACCAGCTCGCTTTTGGCCTTC----------------------------------------------------TTC------------------------------------------T----------C-T-------------------------------TT------------GCTCCAC-----C--T---TCT-TT-GGGGTTTATTTACATG-----------TGGCCCACGCACAAATCCCC------CC--GCTCACTC--CGCCCACGCGACACGACGACGAC--------------GACGA-CGG------TGGCT---GGTTATC-CAGATTCTGCTGCAGCCCTTCACATACATACAACAGATTCCTGGCAAACAATT
droFic1 scf7180000453839:1368915-1369220 + GCATATTGCAGAAGACCAAAGATAAATCAACTCAGAAGGAGCAGGATGAGGTACTTATCCCA-CGGCTTAATCCTTCC-GGACC------------------------------------------------CCG---T--AAACTTTGACATTTG-AAAG-T-GG-CACC-----------------------------------------------------------------------------------------------------------CCCA--AAAAA---C-ACAAAACTAAC----------TCGGCCTTC----------------------------TTTCCCT---CC------------GT---------------------CC-----------------C-------------TCT-------------------------------TC------------AATCCACTCTTCT--TC--TTT-TT-GGGGTTTATTTACATG-----------TGGCCCACGCACAAAAATCC--------ACTCCCACATGGCGCT------------------------------------CGTTGA------TGGTT-AACGTTATC-CAGATTCTGCTGCAGCCCTTCACATACATACAACAGATTCCTGGCAAACAATT
droEle1 scf7180000491255:75307-75634 - GCATATTGCAGAAGACCAAAGATAAATCAACGCAAAAGGAGCAGGATGAGGTACTTATCCCA-CGGCCTAATCCATCC-GGACC------------------------------------------------CC----T--GAACTTTGACATTTT-AAAG-T-GG-CACC-----------------------A--GC-----------------------------------------CACACCA----------CCCCCCCACCTCCGCAC-CC-CCCGAATAAAA---C-AC-CAACTAACCAGCTC--T------------------------------------------------CCGTCGCC------TT------------------CT-CC-----------------T-------------TCT-------------------------------TC------------AACCCAC-----T--T---ATT-TT-GGGGTTTATTTACATG-----------TGGCCCACGCACAAAAACTC------CCACTCCCAAACGGCGCC---------------------------------------CGA------TGGTTAAACGCTGTC-CAGATTCTGCTGCAGCCCTTCACATACATACAACAGATTCCTGGCAAGCAATT
droRho1 scf7180000780051:5215-5521 + GCATATTGCAGAAGACCAAAGATAAATCAACGCAAAAGGAGCAGGATGAGGTACTTATCCCA-CGGCTTAATCCTTCC-GGACC------------------------------------------------CC----T--GAACTTTGACATTTG-AAAG-T-GG-CACC-----------------------ACGGC-----------------------------------------CAC-------------------------------CCC-CCCGA-AAAAA---C-AC-CAACTAACCAGCT--------------------------------------------------CTCCTTCGCC------------------------CTCT-GC-----------------T-------------TCT-------------------------------TC------------AACCCAC-----T--T---ATT-TT-GGGGTTTATTTACATG-----------TGGCCCACGCACAAAAACCC--------ACTCCCACATGGCGCC---------------------------------------CGA------TGGTTAAACGTTATC-CAGATTCTGCTGCAGCCCTTCACATACATACAGCAGATTCCTGGCAAGCAATT
droBia1 scf7180000302193:6270073-6270415 + GCATTTTGCAAAAGACCAAAGATAAATCAACGCAGAAGGAGCAGGATGAGGTACTTATCCCA-CGGCCTAATCCTTCC-GGACC------------------------------------------------CC----C--GAACTTTGACATTTG-AAAG-T-GG-CCC------------------------------------------------------------------------------------------------------------CCCG--AAAGA---C-AC-TAACTAACTAGCTC--TCTCGGCCTTC----------------------------------------------------TTCTTTTCGTCTCC----TTCT-GC-----------------TCTTCCCCTGCCCCTTTCCGTTCCC-----ACCCACAA----AAC----C------------ACCCCAC-----T--CCACTTT-TT-GGGGTTTATTTACATG-----------TGGCCCACGCACAT-------------T-------------------GCGA--CGACGACGAC--------------GACGACCGA------TGGCTGAACCTTATC-CAGATTCTGCTGCAGCCCTTCACATACATACAGCAGATTCCTGGCAAACAATT
droTak1 scf7180000415773:323657-323958 - GCATATTGCAAAAGACCAAAGATAAATCAACGCTAAAGGAGCAGGATGAGGTACTTATCCCA-CGGCTTAATCCTTCC-GGACC------------------------------------------------CC----T--GAACTTTGACATTTG-AAAG-T-GG-CACC-----------------------------------------------------------------------------------------------------------CCCG--AAAGA---C-AC-TAACTAACTAGCTC--TCTCGGCCTTC----------------------------------TTCTCT------------TTC------------------------------------------T----------ATT-----CCCTGTCAACCCACAACCCACAC-----------------CACCCAC-----TCCT---TTT-TT-GGGGTTTATTTACATG-----------TGGCCCACGCACAAAAA--------------------------------------------------------------------A------TGGCCAAACGCTATC-CAGATTCTGCTGCAGCCCTTCACATACATACAACAGATTCCTGGCAAACAATT
droEug1 scf7180000409006:128667-128959 - ACATATTGCAAAAGACCAAAGATAAATCAACGCAAAAGGAGCAGGATGAGGTACTTATCCCA-CGGCTTAATCCTTCC-GGACC------------------------------------------------CC----T--GAACTTTGACATTTG-AAAG-T-GG-CATG-----C-----------------------------------------------------------------------------------------------------CCTG--AAAGACGAC-AC-TAACTAACCAGC-----------CT-------------------------------------------TCTCC----ACCTC------------------------------------------T----------TTT-------------------------------TG------------AACCCAC-----T--TC---TT-TT-GGGGTTTATTTACATG-----------TGGCCCACGCACCAAAA----------------------------------------AACGAC--------------GACGACTGATGGTGTTGGTTAAACGTTATC-CAGATTCTGCTGCAGCCCTTCACATACATACAACAGATTCCTGGCAAACAATT
dm3 chr3L:7341726-7342012 + TCATATTACAGAAGACCAAAGATAAATCAACGCAAAAGGAGCAGGATGAGGTACTTATCCCA-CGGCTTAATCCTTCC-GGACC------------------------------------------------CCG---T--GAACTTTGACATTCG-AAAG-T-GG-CAAG-----CGAA-----------------------------------------------------CGAGAGA--CAC---------------------------------------------AAC-AGCAAACTAACCAGCTA--TTTTGGCCTTC----------------------------CTTCCGTTCTCC------------TTC------------------------------------------T----------TTT-------------------------------TC------------GACCCAC-----T--TC--ATT-TT-GGGCTTTATTTACATG-----------TGGCCCACGCACGCAA----------------------------------------------------------------------------------AACGCTATC-CAGATTCTGCTGCAGCCCTTTACATACATACAACAGATTCCTGGCAAGCAATT
droSim2 3l:7208462-7208749 + dsi_25175 TCATATTACAGAAGACCAAAGATAAATCAACGCAAAAGGAGCAGGATGAGGTACTTATCCCA-CGGCTTAATCCTTCC-GGACC------------------------------------------------CCG---T--GAACTTTGACATTCG-AAAG-T-GG-CGAC-----CGAA-----------------------------------------------------CGAGAGA--CAC---------------------------------------------AAC-AGCAAACTAACCAGCTA--TTTTGGCCTTC----------------------------CTTCCGTTCTCC------------TTC------------------------------------------T----------TTT-------------------------------TC------------GACCCAC-----T--TC--ATT-TT-GGGCTTTATTTACATG-----------TGGCCCACGCACGCAAA---------------------------------------------------------------------------------AACGCTATC-CAGATTCTGCTGCAGCCCTTCACATACATACAACAGATTCCTGGCAAGCAATT
droSec2 scaffold_2:7266458-7266745 + TCATATTACAGAAGACCAAAGATAAATCAACGCAAAAGGAGCAGGATGAGGTACTTATCCCA-CGGCTTAATCCTTCC-GGACC------------------------------------------------CCG---T--GAACTTTGACATTCG-AAAG-T-GG-CGAC-----CGAA-----------------------------------------------------CGAGAGA--CAC---------------------------------------------AAC-AGCAAACTAACCAGCTA--TTTTGGCCTTC----------------------------CTTCCGTTCTCC------------TTC------------------------------------------T----------TTT-------------------------------TC------------GACCCAC-----T--TC--ATT-TT-GGGCTTTATTTACATG-----------TGGCCCACGCACGCAAA---------------------------------------------------------------------------------AACGCTATC-CAGATTCTGCTGCAGCCCTTCACATACATACAACAGATTCCTGGCAAGCAATT
droYak3 3L:7946550-7946834 + GCATATTACAGAAGACCAAAGATAAATCAACGCAAAAGGAGCAGGATGAGGTACTTATCCCA-CTGCCTAATCCTTCC-GGACC------------------------------------------------CCATGAT--GAACTTTGACATTTA-AAAG-T-GA-CACC-------------------------------------------------------------------------------------------------------------------------C-AC-CAACTAACCAGCTA--TTTTGGCCTTT------------------------------CCCATTCTCCTTCTCC------------------------ATCT-GC-----------------TTCT----------TTT-------------------------------TC------------GTCCCAC-----T--TC--ATTTTC-GGGTCTTATTTACATG-----------TGGCCCACGCACGCAAA---------------------------------------------------------------------------------CGCGCTATC-CAGATTCTGCTGCAGCCCTTCACATACATACAACAGATTCCTGGCAAACAATT
droEre2 scaffold_4784:3999623-3999892 - GCATATTACAGAAGACCAAAGATAAATCAACGCAAAAGGAGCAGGATGAGGTACTTATCCCA-CGGCTTCATCCTTCCAGGACC------------------------------------------------CCATGAT--GAACTTTGACATTTG-AAAG-T-GG-CACC-------------------------------------------------------------------------------------------------------------------------CAAC-CAACTAACCAGCTA--TTTTGGCCTTC--------------------------------CGTTCTCC------------TTC------------------------------------------T----------T-T-------------------------------TC------------GTCCCAC-----T--TC--ATTTTC-GGGTCTTATTTACATG-----------TGGCCCACGCACGCA-----------------------------------------------------------------------------------AACGCCATC-CAGATTCTGCTGCAGCCCTTCACATACATACAACAGATTCCGGGCAAACAATT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
GTATATTGCAGAAAACCAAAGATAAATCAACGCAAAAAGAGCAGGATGAGGTACTTATCCCTTCCGTTTAATCATTCA-AGAGC------------------------------------------------C-----T--GAACTTTGGCATTTT-AAAGATTGA-CGCC-----------------------A--GCGCCTGGGCCTGTGTCTGGGTCTGGGCCTGCGCCCCG----ACAC-----------------------------------CCCA--AAA-A---C-CCCAAACTAATCTACT-------------------------------------------------------TCTCGGTTCACTTC------------------------------------------T----------T-T-------------------------------TC------------TTCCCAC-----T--TC----T-TT-ACGGTTTATTTACATG-----------TCGCCCACGCACCCACGTGTATCCCATC--G----------------------------------------------------------------------CTTATCCCAGATTCTGCTGCAGCCCTTCACATACATACAACAGATTCCTGGCAAACAATTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACATACAACAGATTCCTGGCAAACA...2711.0010100000000
.TATATTGCAGAAAACCAAAGATAAATC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010010000000
.......................................................................................................................................................................................................................................................................................CCA--AAA-A---C-CCCAAACTAATCT...................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
droPer2
GTATATTGCAGAAAACCAAAGATAAATCAACGCAAAAAGAGCAGGATGAGGTACTTATCCCTTCCGTTTAATCATTCA-AGAGC------------------------------------------------C-----T--GAACTTTGGCATTTT-TAAGATTGA-CGCC-----------------------A--GCGCCTGGGCCTGTGTCTGGGTCTGGGCCTGCGCCCCG----ACAC-----------------------------------CCCA--AAA-A---C-CCCAAACTAATCTACT-------------------------------------------------------TCTCGGTTCACTTC------------------------------------------T----------T-T-------------------------------TC------------TTCCCAC-----T--TC----T-TT-ACGGTTTATTTACATG-----------TCGCCCACGCACCCACGTGTATCCCATC--G----------------------------------------------------------------------CTTATCCCAGATTCTGCTGCAGCCCTTCACATACATACAACAGATTCCTGGCAAACAATTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAACAGATTCCTGGCA.......1911.001010000
...................................................................................................................................................................................................................GTCTGGGTCTGGGCCTGCGCCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGCAGCCCTTCACATAC..........................2011.001010000
droWil2
GCATATTGCAGAAAACCAAAGATAAATCCACGCAAAAGGAGCAGGATGAGGTAAGTG--------------------------C--------GTG-TGTGGGTGTGCGAGTGCCAGTGTGTGT-GTAAGCCAAA----T--GAACTTTGACATTTC-TC------------------------------------------------------------------------------------------------------------------------------AAAA---C-TC-CAACTCCC-------------------------CTAACC---------------------------------------------------------------A---------------------------------CT----------------------------TCATT------------A--------------T---TCC-TT-GCGCTTTATTTACATG-----------TCACCTTCAATCTGTTACCC--------CCCCTCTCAT---------------------------------------CATT----A------TTATCATCGGCCATA-CAGATACTTTTGCAGCCCTTTTCGTATATCCAAGAAATTCCTGGCAAACAATTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---------------------------------------CATT----A------TTATCATCGGCCATA-CA...................................................2312.00220000
...........................CCACGCAAAAGGAGCAGGATGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100
.................................................................................................GTGGGTGTGCGAGTGCCAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
..................................................................................................................AGTGTGTGT-GTAAGCCAAA----T--G........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
..................................................GTAAGTG--------------------------C--------GTG-TGTGGGTGTGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
.....................................................................................................GTGTGCGAGTGCCAGTGTGTGT-GTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010
..............................CGCAAAAGGAGCAGGATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100001
droVir3
GCATACTGCAAAAAACCAAAGATAAATCAACGCAAAAGGAGCAGGACGAGGTAGCCATCCCA-CC---CA-----------AGCCCA-AAACCAGTTAACCGTTAACCAGTGGCAGCG--------CTGCCACT----T--GATCTTTGACATTTT-TGAG-C-TG-CC----GTCTGTTTGCT-----------------------------------------------------GGA--CTT---------------------------------------------AAT-CG-AA----------------------------GCACTAACC----------------------------TTCTGA--------------------------------------------------------------------------------------------------------------------G-----T--TTATTTT-TT-GTGGCTTATTTACATGCTCTGTTGACATCGCCCACGCAC-------------------------------------------------------------------------------------------------AGATCTTGTTGCAGCCCTTTACGTACATACAGCAAATACCTGGCAAACAGTTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................................................................................................................................................................................................................................GGA--CTT---------------------------------------------AAT-CG-AA----------------------------GCACTAACC----------------------------TTCTG.....................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000010000000000000000000000000000000000
................CAAAGATAAATCAACGCAAAAGGAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000010000000000000000000000000000000000000000000000
.....................ATAAATCAACGCAAAAGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATACAGCAAATACCTGGC........2011.001000100000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTCTGTTGACATCGCCCACGCAC-------------------------------------------------------------------------------------------------A...................................................2611.001000000000000000000000000000100000000000000000000000000000000000
.........................................................................................................................................................TTT-TGAG-C-TG-CC----GTCTGTTTGCT-----------------------------------------------------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAATACCTGGCAAACA...1911.001000000000000000000000000000001000000000000000000000000000000000
.........................ATCAACGCAAAAGGAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000100000000000000000000000000
............AAACCAAAGATAAATCAACGCAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000010000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGACATCGCCCACGCAC-------------------------------------------------------------------------------------------------A...................................................2111.001000000000000000000000000000000010000000000000000000000000000000
...............................................................................................................................................................................................................................................A--CTT---------------------------------------------AAT-CG-AA----------------------------GCACTAACC----------------------------TTCTGA--------------------------------------------------------------------------------------------------------------------G-----T--.......................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
...........................CAACGCAAAAGGAGCAGGAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000100000000000000000000000000000000000000000000000000000000000
...................AGATAAATCAACGCAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000001000000000000000000000000000000000
.............AACCAAAGATAAATCAACGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
droMoj3
GAATATTGCAAAAAACCAAAGATAAATCAACTCAAAGGGAACAGGACGAGGTACACAGCCCA-CC---CA-----------ATCCCAAAAACCAGTTAACCGTTAACCAGTAGCAGCG--------ATGTCATA----TGCGAACTTTGACATTTT-TGAG-C-TG-CCTGCCGCCTGTTTGCT------------G-------------------------A--------------------------------------------------------CCA--AA--A---C-CC-GAAC-----------------------C-----GTAACC----------------------------TTCTGCGT------------------------TT-AC-----------------T-------------TCA-------------------------------TT------------AATTTTT-----T--T---TTT-TT-GTGGCTTATTTACATGC--CGTTGACATCGCCCACGCACAAA---------------------------------------------------------------------------------------------CAGATTCTGCTGCAGCCCTTTACGTACATACAGCAAATACCTGGCAAACAGTTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
........................................................................................................AACCAGTAGCAGCG--------ATGTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
droGri2
GCATACTGCAAAAAACCAAAGATAAATCAACGCAAAAGGAGCAGGACGAGGTAGCCAACCCA-CTTGAAA---------AGAACCCA-CAACCAGTTAACTGTTAACCAGCAACAGCG-----ACGATGTCACT----T--GAACTTTGACATTTT-TGAA-CTGT-CGTC-----TGTCTGTTGGTTGGTTGGCTG-------------------------G--------------------------------------------------------CCA--AA--A---G-CC-TAAA-----------------------CGAGCACTAACCCTTTGCGTTTACTTCTTTTTTATTTTTG------------TTT-------------------------------------------------------T-------------------------------TT------------G-----T-----T--TT--ATT-TT-GTGGCTTATTTACATGA--TGTTGATATCGCCCACGCACACACACACACACCAAC--A------------------------------------------------------------------------CACA-CAGATTCTGCTGCAGCCCTTTACGTACATACAGCAAATACCTGGCAAACAGTTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
GCATACTACAAAAAACCAAAGATAAATCAACGCAGAAGGAGCAGGATGAGGTACTTATCCCA-CGGCTTAATCCTTCC-GGACC------------------------------------------------CCA---T--GAACTTTGGCATTTTGAAAG-T-TGTCGC---------------------------------------------------------------------------------------------------------------------------------GCTAACCAGCT-------------------------------------------------TCTTCTTCTC-------TC----------------CTCT-ACTCTCTTTAT---CCTCC---T----------T-TTTGTTC------------------------ATC---AACTTCCTGCGCCCAC-----T-------TT-TTGGGGCTTTATTTACATG-----------TGGCCCACGCACCACT-------------------------------GCTC--CTACTGCTACC----ACTTCCCCCC---ACCTT------T-------GGCTATCCCAGATTCTGCTGCAGCCCTTCACATACATACAACAGATTCCTGGGAAGCAATTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............................................................................GGACC------------------------------------------------CCA---T--GAACTTTGGCATTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
....................GATAAATCAACGCAGAAGGAGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
droBip1
GCATACTACAAAAAACCAAAGATAAATCAACGCAAAAGGAGCAGGATGAGGTACTTATCCCA-CGGCTTAATCCTTCC-GGACC------------------------------------------------CC----T--GAACTTTGCCATTTG-AAAG-T-TGTCGC---------------------------------------------------------------------------------------------------------------------------------GCTAACCAG----------GC---------------------------------------TCTTCTTCTCC------TCC---------TTCTCTGTCTCTCTCTCTCTGTCTTCCTCCT-------------TCT----------------------------TCATTATTAACTTCCTGCGCCCAC-----T-------TT-TT-GGGTTTTATTTACATG-----------TGGCCCACGCACCACT-------------------------------GCTT--C-ACTGCT-CCACCCACT-CCACCCATCACTCA------TGGTTG--GGGTATC-CAGATTCTGCTGCAGCCCTTCACATACATACAACAGATTCCTGGCAAGCAATTSizeHit CountTotal NormTotal
No Reads
droKik1
GCATACTGCAGAAAACCAAAGATAAATCAACGCAAAAGGAGCAGGATGAGGTACGTGTCCCG-CGGCTTAATCCTTCC-GGACC------------------------------------------------CC----T--GAACTCTGACATTTG-GAGG-T-GG-CGAG-----------------------------------------------------------------GCGA--CACCAGGGCAAAGTCGCCCTCGCCCTCGGCACCCTCCCCG--AAAAA---C-AC-TAACTAACCAGCTCGCTTTTGGCCTTC----------------------------------------------------TTC------------------------------------------T----------C-T-------------------------------TT------------GCTCCAC-----C--T---TCT-TT-GGGGTTTATTTACATG-----------TGGCCCACGCACAAATCCCC------CC--GCTCACTC--CGCCCACGCGACACGACGACGAC--------------GACGA-CGG------TGGCT---GGTTATC-CAGATTCTGCTGCAGCCCTTCACATACATACAACAGATTCCTGGCAAACAATTSizeHit CountTotal NormTotal
No Reads
droFic1
GCATATTGCAGAAGACCAAAGATAAATCAACTCAGAAGGAGCAGGATGAGGTACTTATCCCA-CGGCTTAATCCTTCC-GGACC------------------------------------------------CCG---T--AAACTTTGACATTTG-AAAG-T-GG-CACC-----------------------------------------------------------------------------------------------------------CCCA--AAAAA---C-ACAAAACTAAC----------TCGGCCTTC----------------------------TTTCCCT---CC------------GT---------------------CC-----------------C-------------TCT-------------------------------TC------------AATCCACTCTTCT--TC--TTT-TT-GGGGTTTATTTACATG-----------TGGCCCACGCACAAAAATCC--------ACTCCCACATGGCGCT------------------------------------CGTTGA------TGGTT-AACGTTATC-CAGATTCTGCTGCAGCCCTTCACATACATACAACAGATTCCTGGCAAACAATTSizeHit CountTotal NormTotal
No Reads
droEle1
GCATATTGCAGAAGACCAAAGATAAATCAACGCAAAAGGAGCAGGATGAGGTACTTATCCCA-CGGCCTAATCCATCC-GGACC------------------------------------------------CC----T--GAACTTTGACATTTT-AAAG-T-GG-CACC-----------------------A--GC-----------------------------------------CACACCA----------CCCCCCCACCTCCGCAC-CC-CCCGAATAAAA---C-AC-CAACTAACCAGCTC--T------------------------------------------------CCGTCGCC------TT------------------CT-CC-----------------T-------------TCT-------------------------------TC------------AACCCAC-----T--T---ATT-TT-GGGGTTTATTTACATG-----------TGGCCCACGCACAAAAACTC------CCACTCCCAAACGGCGCC---------------------------------------CGA------TGGTTAAACGCTGTC-CAGATTCTGCTGCAGCCCTTCACATACATACAACAGATTCCTGGCAAGCAATTSizeHit CountTotal NormTotal
No Reads
droRho1
GCATATTGCAGAAGACCAAAGATAAATCAACGCAAAAGGAGCAGGATGAGGTACTTATCCCA-CGGCTTAATCCTTCC-GGACC------------------------------------------------CC----T--GAACTTTGACATTTG-AAAG-T-GG-CACC-----------------------ACGGC-----------------------------------------CAC-------------------------------CCC-CCCGA-AAAAA---C-AC-CAACTAACCAGCT--------------------------------------------------CTCCTTCGCC------------------------CTCT-GC-----------------T-------------TCT-------------------------------TC------------AACCCAC-----T--T---ATT-TT-GGGGTTTATTTACATG-----------TGGCCCACGCACAAAAACCC--------ACTCCCACATGGCGCC---------------------------------------CGA------TGGTTAAACGTTATC-CAGATTCTGCTGCAGCCCTTCACATACATACAGCAGATTCCTGGCAAGCAATTSizeHit CountTotal NormTotal
No Reads
droBia1
GCATTTTGCAAAAGACCAAAGATAAATCAACGCAGAAGGAGCAGGATGAGGTACTTATCCCA-CGGCCTAATCCTTCC-GGACC------------------------------------------------CC----C--GAACTTTGACATTTG-AAAG-T-GG-CCC------------------------------------------------------------------------------------------------------------CCCG--AAAGA---C-AC-TAACTAACTAGCTC--TCTCGGCCTTC----------------------------------------------------TTCTTTTCGTCTCC----TTCT-GC-----------------TCTTCCCCTGCCCCTTTCCGTTCCC-----ACCCACAA----AAC----C------------ACCCCAC-----T--CCACTTT-TT-GGGGTTTATTTACATG-----------TGGCCCACGCACAT-------------T-------------------GCGA--CGACGACGAC--------------GACGACCGA------TGGCTGAACCTTATC-CAGATTCTGCTGCAGCCCTTCACATACATACAGCAGATTCCTGGCAAACAATTSizeHit CountTotal NormTotal
No Reads
droTak1
GCATATTGCAAAAGACCAAAGATAAATCAACGCTAAAGGAGCAGGATGAGGTACTTATCCCA-CGGCTTAATCCTTCC-GGACC------------------------------------------------CC----T--GAACTTTGACATTTG-AAAG-T-GG-CACC-----------------------------------------------------------------------------------------------------------CCCG--AAAGA---C-AC-TAACTAACTAGCTC--TCTCGGCCTTC----------------------------------TTCTCT------------TTC------------------------------------------T----------ATT-----CCCTGTCAACCCACAACCCACAC-----------------CACCCAC-----TCCT---TTT-TT-GGGGTTTATTTACATG-----------TGGCCCACGCACAAAAA--------------------------------------------------------------------A------TGGCCAAACGCTATC-CAGATTCTGCTGCAGCCCTTCACATACATACAACAGATTCCTGGCAAACAATTSizeHit CountTotal NormTotal
No Reads
droEug1
ACATATTGCAAAAGACCAAAGATAAATCAACGCAAAAGGAGCAGGATGAGGTACTTATCCCA-CGGCTTAATCCTTCC-GGACC------------------------------------------------CC----T--GAACTTTGACATTTG-AAAG-T-GG-CATG-----C-----------------------------------------------------------------------------------------------------CCTG--AAAGACGAC-AC-TAACTAACCAGC-----------CT-------------------------------------------TCTCC----ACCTC------------------------------------------T----------TTT-------------------------------TG------------AACCCAC-----T--TC---TT-TT-GGGGTTTATTTACATG-----------TGGCCCACGCACCAAAA----------------------------------------AACGAC--------------GACGACTGATGGTGTTGGTTAAACGTTATC-CAGATTCTGCTGCAGCCCTTCACATACATACAACAGATTCCTGGCAAACAATTSizeHit CountTotal NormTotal
No Reads
dm3
TCATATTACAGAAGACCAAAGATAAATCAACGCAAAAGGAGCAGGATGAGGTACTTATCCCA-CGGCTTAATCCTTCC-GGACC------------------------------------------------CCG---T--GAACTTTGACATTCG-AAAG-T-GG-CAAG-----CGAA-----------------------------------------------------CGAGAGA--CAC---------------------------------------------AAC-AGCAAACTAACCAGCTA--TTTTGGCCTTC----------------------------CTTCCGTTCTCC------------TTC------------------------------------------T----------TTT-------------------------------TC------------GACCCAC-----T--TC--ATT-TT-GGGCTTTATTTACATG-----------TGGCCCACGCACGCAA----------------------------------------------------------------------------------AACGCTATC-CAGATTCTGCTGCAGCCCTTTACATACATACAACAGATTCCTGGCAAGCAATTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACATACAACAGATTCCTGGCAAGC....2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..ATATTACAGAAGACCAAAGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................AAG-T-GG-CAAG-----CGAA-----------------------------------------------------CGAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000001000000000000000
.............................................................................................................................................................AAAG-T-GG-CAAG-----CGAA-----------------------------------------------------CGAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000001000000000000000000000000000000000
.............................ACGCAAAAGGAGCAGGATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
....ATTACAGAAGACCAAAGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
.....................ATAAATCAACGCAAAAGGAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
..............ACCAAAGATAAATCAACGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
..................AAGATAAATCAACGCAAAAGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.............................ACGCAAAAGGAGCAGGATGAGAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATACAACAGATTCCTGGCA.......2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACATACATACAACAGATTCCTGGCA.......2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................ACGCAAAAGGAGCAGGATGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................CGCAAAAGGAGCAGGATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
..............................CGCAAAAGGAGCAGGATGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCTGCTGCAGCCCTTTACATACATA.......................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................ATCAACGCAAAAGGAGCAGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGATTCCTGGCAAGC....1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TT-GGGCTTTATTTACATG-----------TG...............................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.........................................................................................................................................................................AG-----CGAA-----------------------------------------------------CGAGAGA--CAC---------------------------------------------AAC-AG..............................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAGATTCCTGGCAAGCAA..2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................TA--TTTTGGCCTTC----------------------------CTTCCGTTCTC...........................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTATC-CAGATTCTGCTGCAG......................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TTACAGAAGACCAAAGATAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
............................................GATGAGGTACTTATCCCA-CGGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...TATTACAGAAGACCAAAGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...............................................................................................................................................................AG-T-GG-CAAG-----CGAA-----------------------------------------------------CGAGAGA--A...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATG-----------TGGCCCACGCACGC...................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................TACTTATCCCA-CGGCTTAATCCTTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................AAAAGGAGCAGGATGAGGTACT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..................................AAAGGAGCAGGATGAGGTAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..........................TCAACGCAAAAGGAGCAGGATGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
............AGACCAAAGATAAATCAACGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....ATTACAGAAGACCAAAGATAAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................CAAAAGGAGCAGGATGAGGTA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATACAACAGATTCCTGGCA.......2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...............................GCAAAAGGAGCAGGATGAGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
....................................AGGAGCAGGATGAGGTAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................AAAAGGAGCAGGATGAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATT-TT-GGGCTTTATTTAG...............................................................................................................................................................................1840.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................AAAGGAGCAGGATGAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1770.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TCATATTACAGAAGACCAAAGATAAATCAACGCAAAAGGAGCAGGATGAGGTACTTATCCCA-CGGCTTAATCCTTCC-GGACC------------------------------------------------CCG---T--GAACTTTGACATTCG-AAAG-T-GG-CGAC-----CGAA-----------------------------------------------------CGAGAGA--CAC---------------------------------------------AAC-AGCAAACTAACCAGCTA--TTTTGGCCTTC----------------------------CTTCCGTTCTCC------------TTC------------------------------------------T----------TTT-------------------------------TC------------GACCCAC-----T--TC--ATT-TT-GGGCTTTATTTACATG-----------TGGCCCACGCACGCAAA---------------------------------------------------------------------------------AACGCTATC-CAGATTCTGCTGCAGCCCTTCACATACATACAACAGATTCCTGGCAAGCAATTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCCTTCACATACATACAACAGATT..............2611.00100000000000010000
..................................AAAGGAGCAGGATGAGGTACT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000010000
...................................................................TTAATCCTTCC-GGACC------------------------------------------------CCG---............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110000000000000000
...........................................................................................................................................................................................................................................................................................................ACTAACCAGCTA--TTTTGGCC.....................................................................................................................................................................................................................................................................................................................................................................................2011.00100001000000000000
.................................AAAAGGAGCAGGATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1720.50100000000001000000
droSec2
TCATATTACAGAAGACCAAAGATAAATCAACGCAAAAGGAGCAGGATGAGGTACTTATCCCA-CGGCTTAATCCTTCC-GGACC------------------------------------------------CCG---T--GAACTTTGACATTCG-AAAG-T-GG-CGAC-----CGAA-----------------------------------------------------CGAGAGA--CAC---------------------------------------------AAC-AGCAAACTAACCAGCTA--TTTTGGCCTTC----------------------------CTTCCGTTCTCC------------TTC------------------------------------------T----------TTT-------------------------------TC------------GACCCAC-----T--TC--ATT-TT-GGGCTTTATTTACATG-----------TGGCCCACGCACGCAAA---------------------------------------------------------------------------------AACGCTATC-CAGATTCTGCTGCAGCCCTTCACATACATACAACAGATTCCTGGCAAGCAATTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGATTCCTGGCAAGC....1811.0010001
.....................ATAAATCAACGCAAAAGGAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100
...........................CAACGCAAAAGGAGCAGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
..................AAGATAAATCAACGCAAAAGGAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
.............................ACGCAAAAGGAGCAGGATGAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
.................AAAGATAAATCAACGCAAAAGGAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
......................................GAGCAGGATGAGGTACTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
.......................AAATCAACGCAAAAGGAGCAGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
droYak3
GCATATTACAGAAGACCAAAGATAAATCAACGCAAAAGGAGCAGGATGAGGTACTTATCCCA-CTGCCTAATCCTTCC-GGACC------------------------------------------------CCATGAT--GAACTTTGACATTTA-AAAG-T-GA-CACC-------------------------------------------------------------------------------------------------------------------------C-AC-CAACTAACCAGCTA--TTTTGGCCTTT------------------------------CCCATTCTCCTTCTCC------------------------ATCT-GC-----------------TTCT----------TTT-------------------------------TC------------GTCCCAC-----T--TC--ATTTTC-GGGTCTTATTTACATG-----------TGGCCCACGCACGCAAA---------------------------------------------------------------------------------CGCGCTATC-CAGATTCTGCTGCAGCCCTTCACATACATACAACAGATTCCTGGCAAACAATTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................................................................................................................................CCATGAT--GAACTTTGACATTTA-.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTACATG-----------TGGCCCACGC.......................................................................................................................................................1911.00100100000000
droEre2
GCATATTACAGAAGACCAAAGATAAATCAACGCAAAAGGAGCAGGATGAGGTACTTATCCCA-CGGCTTCATCCTTCCAGGACC------------------------------------------------CCATGAT--GAACTTTGACATTTG-AAAG-T-GG-CACC-------------------------------------------------------------------------------------------------------------------------CAAC-CAACTAACCAGCTA--TTTTGGCCTTC--------------------------------CGTTCTCC------------TTC------------------------------------------T----------T-T-------------------------------TC------------GTCCCAC-----T--TC--ATTTTC-GGGTCTTATTTACATG-----------TGGCCCACGCACGCA-----------------------------------------------------------------------------------AACGCCATC-CAGATTCTGCTGCAGCCCTTCACATACATACAACAGATTCCGGGCAAACAATTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACATACAACAGATTCCGGG.........2111.0011000000
...........................CAACGCAAAAGGAGCAGGATGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
..ATATTACAGAAGACCAAAGATAAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000100
.....TTACAGAAGACCAAAGATAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010

Generated: 05/18/2015 at 06:29 AM