ID:

dps_325

 Coordinate:

2:3160576-3160726 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dpse\GA30025-cds]; exon [Dpse\GA30025:10]; intron [Dpse\GA30025-in]; intron [Dpse\GA30025-in]

Repeatable elements

NameClassFamilyStrand
(GA)nSimple_repeatSimple_repeat+
(TTTC)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CGATTCCGATCCGGAAAATGAACAAACTAAACGCTCACATTTCAGTTCCGGTAAGTTGATCAAAATCCAAATCCAATTCATACAAAAAAAAAAAAAAGAAAGAAAGAAAAGAAAGAAAGAACAGACCAGAAAATCAGAAATGAAAAGAAACAGAAAATATTTCAATCGCTCTTGCATATTCCATTATCGTGCTCTCTATCTCTCTCTCTCTCTCTATCTACCTCTCTCTCTATCTCTATCGTTCGTTATCT
**************************************************((((((((...............)))))..)))..............................(((.(((...((.((((.(((..((((((..((((....((((...))))......)))).))).))).))).)).)).))))).)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 M059
embryo
 V112
male body		 GSM343916
embryo
..............................ACGCTCACATTTCAGTTCCGGAT...................................................................................................................................................................................................... 23 2 1 2.00 2 1 0 1 0
................................GCTCACATTTCAGTTCCGG........................................................................................................................................................................................................ 19 0 1 1.00 1 1 0 0 0
............GGAAAATGAACAAACTAAAC........................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0
.GATTCCGATCCGGAAAATGAAC.................................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0
...........................CAAACGCTCACATTTCAGTTCCGGC....................................................................................................................................................................................................... 25 2 1 1.00 1 1 0 0 0
.............................AACGCTCACATTTCAGTTCCGG........................................................................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0
.......GATCCGGAAAATGAACAAAC................................................................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0
............................AAACGCTCACATTTCAGTTCCGT........................................................................................................................................................................................................ 23 1 1 1.00 1 1 0 0 0
............................AAACGCTCACATTTCAGTTCCGGATC..................................................................................................................................................................................................... 26 3 1 1.00 1 1 0 0 0
.....CCGATCCGGAAAATGAACA................................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0
.............................AACTCTCACATTTCAGTTCCGAC....................................................................................................................................................................................................... 23 3 1 1.00 1 0 1 0 0
...............................CGCTCACATTTCAGTTCCG......................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0
...............AAATGAACAAACTAAACGCTCAC..................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0
........................AACTAAACGCTCACATTTCA............................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0
.........................ACTAAACGCTCACATTTCAGTTCC.......................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0
......................CAAACTAAACGCTCACATTTCAGTTCCG......................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0
.GATTCCGATCCGGAAAATGA...................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0
............................AAACGCTCACATTTCAGTTCCG......................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0
...................................CACATTTCAGTTCCGGTGA..................................................................................................................................................................................................... 19 1 1 1.00 1 1 0 0 0
...............................CGCTCACATTTCAGTTCCGGAT...................................................................................................................................................................................................... 22 2 1 1.00 1 0 1 0 0
........AGCCGGAAAATGAACAAACTA.............................................................................................................................................................................................................................. 21 1 1 1.00 1 0 1 0 0
....................................................................................AAAAAAAAAAAAAGAAAGAAACAAAAG............................................................................................................................................ 27 1 2 0.50 1 0 0 0 1
...........................................................................................................AACGAAAGAAAGAACAGA.............................................................................................................................. 18 1 8 0.13 1 0 0 0 1
.......................................................................................AAAAATAAAGGAGAGAAAGAAAAGA........................................................................................................................................... 25 3 12 0.08 1 0 0 1 0
............................................................................................................................................................ATATTGCAAACGCGCTTGC............................................................................ 19 3 17 0.06 1 1 0 0 0
...............................................................................................ATGACAGAAAGAAAAGAA.......................................................................................................................................... 18 2 20 0.05 1 1 0 0 0
.....................................................................................AAAAAAAAAAAAGAAAGAGAG................................................................................................................................................. 21 1 20 0.05 1 0 0 1 0

Anti-sense strand reads

GCTAAGGCTAGGCCTTTTACTTGTTTGATTTGCGAGTGTAAAGTCAAGGCCATTCAACTAGTTTTAGGTTTAGGTTAAGTATGTTTTTTTTTTTTTTCTTTCTTTCTTTTCTTTCTTTCTTGTCTGGTCTTTTAGTCTTTACTTTTCTTTGTCTTTTATAAAGTTAGCGAGAACGTATAAGGTAATAGCACGAGAGATAGAGAGAGAGAGAGAGATAGATGGAGAGAGAGATAGAGATAGCAAGCAATAGA
**************************************************((((((((...............)))))..)))..............................(((.(((...((.((((.(((..((((((..((((....((((...))))......)))).))).))).))).)).)).))))).)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 V112
male body
......................................................................................................................................................................................................AGAGAGAGAGAGAGAGATA.................................. 19 0 20 0.05 1 0 1
....................................................................................................................................................................................................................................AGATAGGGATAGTAAGCAC.... 19 3 20 0.05 1 1 0
....................................................................................................TCTTTCGTTTGTTTCTTTC.................................................................................................................................... 19 2 20 0.05 1 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 2:3160526-3160776 - dps_325 CGATTCCGATCCGGAAAATGAACAAACTAAACGCTCACATTTCAGTTCCGGTAAGTTG---------------------------ATCAAA---ATCCAAATCCAA--------------------------------------------------------------------------------------------------------TTC---ATACAAAAAAAAAA----AA---------------------------------------------------------------------------------------------------------------------------AA----GAAA--GAAAGAA----AAGAAAGAAAGAA--CAGACCA-GA---------AAATCAG---------AAATGAAAAGAAACAGAAA---A-T--------------------ATT-TC-AATCGCTCTTGCATATTC------CATT--ATCGTGCTCT-CTAT-C-TCTCTCTCTCTC------------------------------------------------------------------------------TCTATCTACCT------------------------C--TCTCTCTAT--C--T------CTATC---GTT----------CGTTAT-----------------CT
droPer2 scaffold_7:1181299-1181545 + CGATTCCGATCCGGAAAATGAACAAACTAAACGCTCACATTTCAGTTCCGGTAAGTTG---------------------------ATCAAA---ATCCAAATCCAA--------------------------------------------------------------------------------------------------------TTC---ATACAAAAAAAAA----------------------------------------------------------------------------------------------------------------------------------AA----GAAA--GAAAGAA----AAGAAAGAAAGAA--CAGACCAAGA---------AAATCAG---------AAATGAAAAGAAACAGAAA---A-T--------------------ATT-TC-AATCGCTCTTGCATATTC------CATT--ATCGTGCTCT-CTAT-C-TCTCTCTCTCTCT----A----------------------------------------------------------------------------TCTACCT------------------------C--TCTCTCT--ATC--T------CTCTC---GTT----------CGTTAT-----------------CT
droWil2 scf2_1100000004902:9742339-9742629 - CGATTCCGATCCGGAAAATGAACAAACTAAACGCTCACATTTCAGTTCCGGTAAGTTTTCAAAAAAAAAAAAAAAAAAACAAAAAACCAAAGAAATTCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATCCAAATCGAAA-AAAA-A-----GAGAAACCATAATCAAATCCCA------AG----------AAATTCATGTC---AT-ACAAGAA---------------------------G------------------------------------------------TAAA-AAACAGAAA---A-TGTTATAGTAAAATAATTTCAATT-TC-AATCGCTCTTGCATATGC------CATT--ATCGTGCTCT-CTCT-C-TCTCTCTATTTCT----C------------------------------------------------------------------------------T----CTCTCT------------CTCTCTC----TGTCT--ATCTAT------GTCTC------------------T----------------TAT-CT
droVir3 scaffold_13047:676957-677185 + dvi_14927 CGATTCCGATCCGGAAAATGAACAAACTAAACGCTCACATTTCAGTTCCGGTAAGTTT---------------------------TGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATTTC---AAAAAAAAAAAAAAAAAA-CAAAAAAA----AAAAACAGAAAAA--CAAAAAA-AAAAACC---------AAAGTAC---ATAAT-GAGG--------AATAAG-------------------TAAATT-TC-AATCGCTTTTACATATACTACTATCATA--ATCGTGCTCT-TTGT-C-TCTATCTAA--C----TA----------------------------------------------------------------------------TC----------------------------------TATC------TAT------CT-----------------------------CT----ATCTAT-AT
droMoj3 scaffold_6540:4666395-4666652 + CGATTCAGATCCGGAAAATGAACAAACTAAACGCTCACATTTCAGTTCCGGTAAGTTT---------------------------TGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATTTG---AAAAACAAAAAAACAAAATCGAAAAAAATATAAAAACAAAAAACCCCAAAACA-AAAATCCAA--A------AGTAC---GAAAT-G--------TGAAATAAG-------------------CAAATT-TC-AATCGCTTTTACATATACTACTATCATT--ATCGTGCTCC-TTGT-C-TCTAACTAT--C----AA----------------------------------------------------------------------------TCTATCTATCGA------------------ACTATCTAA-TTTATCTAT------CT--C---------------------------A----ATCTAT-CT
droGri2 scaffold_14906:5651778-5651994 - CGATTCCGATCCGGAAAATGAACAAACAAAACGCTCACATTTCAGTTCCGGTAAGTTT---------------------------TGCAA----ATCAA-ATCCAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATTTG---AA---------------------------------------------------------CCAAATA------AGTACCACATAAT-GAGC--------AATGAG-------------------CAAATT-TC-AATCGCTTTTACATATACTACTATCATT--ATCGTGCTCT-CTCT-A-TCTCTCTCTCTCT----A------------------------------------------------------------------------CCT--------------------------ATCTATC----TGTCTA--TCTAT------CTATC-----------------------TATCT----ATCTAT-CT
droAna3 scaffold_13340:4789810-4790099 - CGATTCCGATCCGGAAAATGAACAAACTAAACGCTCACATTTCAGTTCCGGTAAGTTC-------------------------AAACCAAA---ATCCA-A----AATCCAAAATC-GA------------------------------------------AAATCCAA-AA---A-ATC-C----------TCAAAATCAGT-------------------------------------------------------------------------AAATCAGAA-AAATT----------------------ATCCCA------AAAAAAAAAAAAAAATTCATTTC---AAAAGCAGAA---------------------------G-----------------------------------------------------AAACAGAAA---A-T--------------------ATT-TC-AATCGCTCTTGCATATCC------CATT--ATCGTGCTCT-CTCT-T-TCTCTCTAT--C----TA----------------------------------------------------------------------------TCTCTCTC----------------------TC----TCTCTAT--C--T------CTGTCTCTGTTTGAAAAAAAAAGATATATATAT----ATCCGT-CT
droBip1 scf7180000396359:400222-400491 + CGATTCCGATCCGGAAAATGAACAAACTAAACGCTCACATTTCAGTTCCGGTAAGTTG---------------------------ACCAAAAAAATCCA-A----AATCCA-AA--A---------------------------------------ATC-----------------------------------------AGTATCAGTATCCAGTATC--------------------------------------------------CAGT-----------A-TCAGTA-----TC--------AATCGTATCCCAATCCCCA-----------AGATTCATTTCAAAAAAAGCAGAA---------------------------G-----------------------------------------------------ATACAGAAA---A-T--------------------ATT-TC-AATCGCTCTTGCATATCC-----CCATT--ATCGTGCTCT-CTCT-C-TCTCTCTAT------------------------------------------------------------------------------------------------------------ATATAAATC----CGTCT--TTCTAT------ATCTC---GTT----------CGCTATCTA--T----ATCTAT-CT
droKik1 scf7180000302388:1826583-1826880 - CGATTCCGATCCGGAAAATGAACAAACTAAACGCTCACATTTCAGTTCCGGTAAGTTG---------------------------ACCAA----ATCAA-ATC--AATCCA-AA--A---------------------------------------ATCAAAATCCAAA-----------------------------------------TTCAGAATACAAAAAAAAAA----AAAA------AAAAATAGTAAAAGAATTCA-----------------------------------------------TAATCCAA--------------------ATTCATTTC---GAAAGCAGTT---------------AA----AAAATTGGAGTAA--CAGTTTAA--------------------------------GAAG---------A---A-T--------------------ATTGTC-AATCGCTCTTGCATTTAC------CATTATATCGCGCTCT-TCCT-C-TCTGTCTTC--C----TA----------------------------------------------------------------------------TCTCTCTATCCTG------------CTCTATC----TGTCT--ATCTAT------CTCTC---GTT----------CGTTAT-----------------CT
droFic1 scf7180000454106:1931014-1931366 - CGATTCCGATCCGGAAAATGAACAAACTAAACGCTCACATTTCAGTTCCGGTAAGTTG---------------------------ACCAAA---ATCCA-ATCCAAATCCA-AATC-AAAATCAAATTCCAAATCAGATTCCAAATCAAATTTCAAATCGA----------------ATT--------------------------------CCAAATC-------A-AGTTCCGAATCAAATTC--------A----AATTC-------AAATTCAAATCCAAATTCAATACCAAATCG-----AAAATCGAATCCCA--------------------ATTCATTCC---GTCAGCAAAA---------------------------G------------------------------------------------GAAAGAAACGGAAA---A-T--------------------ATC-TCAAATCGCTATTGCATATCC-----CCATT--ATCGTGCTCCTCTCT-A--CTCTC--------------------------------T----------------------------------------------CTGTCTCT--------------------------ATATATC----TGTCTATATCTTT------CTCTC---GTTCGTT------CGTTATCTTTCT----ATCTAT-CT
droEle1 scf7180000491194:429905-430211 + CGATTCCGATCCGGAAAATGAACAAACAAAACGCTCACATTTCAGTTCCGGTAAGTTG---------------------------ACCAAA---ATCCA-ATCCAAATC--------AAAT------------------TCCAAATCAAATTTCAAATCAA----------------ATT--------------------------------CCGAATC-------A-AATTCCAAAT------C--------A----AATTC-------AAATTCAAAT------------------C------AATATCGAATCCCA--------------------ATTCATTTC---GCCAGCAGAA---------------------------G------------------------------------------------GAAGAAAACGGAAA---A-T--------------------ATC-TC-AATCGCTCTTGCATATCC-----CCATT--ATCGTGCTCT-CTCT-C-TCCCTTACTCTGT----A-----------------TTCT----------------------------------------------CTGTCTCT--------------------------ATATATC----TGTCTATATCTAT------CTCTC---GA---CT------CGTTATCTA--------TTTAT-CT
droRho1 scf7180000779488:477470-477796 + TGATTCCGATCCGGAAAATGAACAAACAAAACGCTCACATTTCAGTTCCGGTAAGTTG---------------------------ACCAAA---ATCCA-ATCCAAATCCG-AATA-AAAT------------------TCCAAATCGAATTCCAAATCAA----------------ATT--------------------------------CCAAATC-------G-AATTCCAAAT------C--------A----AATTC-------AAATTCAAACCCAAA-T-----------C------AATATCGAACCCCA--------------------ATTCATTCC---GCCAGCAGAA---------------------------G------------------------------------------------GAAGGAAACGGAAA---A-T--------------------ATC-TC-AATCGCTCTTGCATATCC-----CCATT--ATCGTGCTCT-CTCT-C-TCTCTCTCTCT----------------------------------------------------CCTCTACT--CTACTCTACTCTCTGTCTCT--------------------------ATATATC----TGTCTATATCTAT------CTCTC---GTT----------CGTTATC------------TAT-CT
droBia1 scf7180000302402:7994798-7995107 + CGATTCCGATCCGGAAAATGAACAAACTAAACGCTCACATTTCAGTTCCGGTAAGTTG---------------------------ACCAAA---ATCCA-ATCCAAATCG--------A------------------------------ATTCCAAATCAAAATTCCAA-AT---------------------C------AATATCGATAT-CCGAA--------------------------------------------TC-------AAGTTCAAAT------------------CA-----AAAATCAACCCCCA--------------------ATTCATTCC---GCCAGCAGAA---------------------------G------------------------------------------------GAAAGAAACCGAAA---ACG--------------------ATC-TCAAATCGCTCTTGCATATCC-----CCATT--ATCGTGCTCT-CTCT-C--CTCTCAATCTCT----A------------------TCT----------------------------------------------CTGCGTCT--------------------------TTCTATC----TGTCTATATCTATCCAAAACTCTC---GTT----------CGTTATCTATCTATCTTTCTAT-CT
droTak1 scf7180000415811:282577-282899 - CGATTCCGATCCGGAAAATGAACAAACTAAACGCTCACATTTCAGTTCCGGTAAGTTG---------------------------ACCAAA---ATCCA-ATCCAAATCCA-AATC-AATA------------------TCCAAATCAAATTCCAAATCAA----------------GTT--------------------------------CCGAATC-------A-AATTTCGAAT------C--------A----AATTC-------AAATTCAAAT------------------C------AAAATCGAATCCCA--------------------ATTCATTCC---GCCAGCAGAA---------------------------G------------------------------------------------GAAGGAAACTGAAAA--A-T--------------------ATC-TCAAATCGCTCTTCCATATCC-----CCATT--ATCGTGCTCT-CTCCTCTACTCTCCTTATCT----C------------------------------------------------------------------------------T----CTCTCTCTTTCTCTGTCTATATATC----TGTCTATATCTAT------CTCTC---GTT----------CGTTATCTA--------TCTAT-CT
droEug1 scf7180000407136:440670-441013 - CGATTCCGATCCGGAAAATGAACAAACTAAACGCTCACATTTCAGTTCCGGTAAGTTG---------------------------ACCAAA---ATCCAAATCCAAATCCA-AA------A------------------TCCAA-----------------AATTCCAATATCAAAAATTCCAAAAAAACAATCAAAAT---------------------------------TAGA-----------AAAATCAAAAGAATTCAATTTCCAAATTC------------AAAA-----TC------AAAATCGAATCCCA------A-----------AAATTCATTCA-AAGCCAGCAGAA---------------------------G------------------------------------------------GAA-------------------------------------ATC-TCAAATCGCTCTTCCATATCC-----CCATT--ATCGTGCTCT-CTCC-T-CCTCTCTCTCTCTATCTA----------------------------------------------------------------------------TCTCTCTCTCTCTCTTTCTCTGTCTATATATC----TGTCTTTATCTAT------CTATC---GTT----------CGTTATCTACCT----ATCTATCCT
dm3 chr3R:5258512-5258845 + CGATTCCGATCCGGAAAATGAACAAACTAAACGCTCACATTTCAGTTCCGGTAAGTTG---------------------------ACCAAA---ATCCA-ATCCAAATCCA-AATC-AA------------------------------------------AATTCAAA-AT---------------------C-----------------------------------------------------------A----AATTC-------AAATTCAAATCGAAA-TCAATA-----TCG------AAATCGAAACTCA--------------------ATTCATTTC---GCCAGCAGAA---------------------------G------------------------------------------------GAAG-AAATTGAAATATA-T--------------------ATC-TCAAATCGCTCTTGCATATCC-----CCATT--ATCGTGCTCT-CTCT-T-TTTCTCTCTGTC----AATCTCAATCTCGATCTCAATCTCAGTTTCAATATCAATCTTAAGCTCCTCAACT--CGACGC---------------------------------------------TC----TGTGTATATCTAT------CTCTC---GTT----------CGTTATCTA--------TTTAT-CT
droSim2 3r:15767675-15768010 - dsi_24591 CGATTCCGATCCGGAAAATGAACAAACTAAACGCTCACATTTCAGTTCCGGTAAGTTG---------------------------ACCAAA---ATCCA-ATCCAAATCCA-AATC-AA------------------------------------------AATTCCAA-AT---------------------C-----------------------------------------------------------A----AATTC-------AAATTCAAATCGAAA-TCAATA-----TCG------AAATCGAAACCCA--------------------ATTCATTTC---GCCAGCAGAA---------------------------G------------------------------------------------GAAG-AAATCGAAATATA-T--------------------ATC-TCAAATCGCTCTTGCATATCC-----CCATT--ATCGTGCTCT-CTCT-C-TCTCA--ATT----TCAATTTCAATCTCGATCTCAATCTCAGTTTCAATATCAATCTTAAGCTCCTCAACT--CGACTC---------------------------------------------TC----TGTCTATATCTAT------CTCTC---GTT----------CGTTATCTATCT----ATCTAT-CT
droSec2 scaffold_0:16636886-16637223 - CGATTCCGATCCGGAAAATGAACAAACTAAACGCTCACATTTCAGTTCCGGTAAGTTG---------------------------ACCAAA---ATCCA-ATCCAAATCCA-AATC-AA------------------------------------------AATTCCAA-AT---------------------C-----------------------------------------------------------A----AATTC-------AAATTCAAATCGAAA-TCAATA-----TCG------AAATCGAAACCCA--------------------ATTCATTTC---GCCAGCAGAA---------------------------G------------------------------------------------GAAG-AAATCGAAATATA-T--------------------ATC-TCAAATCGCTCTTGCATATCC-----CCATT--ATCGTGCTCT-CTCT-C-AATTTCAATT----TCAATTTCAATCTCGATCTCAATCTCAGTTTCAATATCAATCTTAAGCTCCTCAACC--CAACTC---------------------------------------------TC----TGTCTATATCTAT------CTCTC---GTT----------CGTTATCTATCT----ATCTAT-CT
droYak3 3R:9305916-9306254 + CGATTCCGATCCGGAAAATGAACAAACTAAACGCTCACATTTCAGTTCCGGTAAGTTG---------------------------ACCAAA---ATCCA-ATCCAAATCCA-AATC-AA------------------------------------------AATTCCAA-ATCAAA-ATT--------------------------------CCAAACC-------AAAATTCCAAAC------CA-------A----AATTC-------AAATTCAAAT------------------C------GAAATCGAATCAAA--------------------ATTCATTTC---GCCAGCAGAA---------------------------G------------------------------------------------GAAG-AAATCGAAATATA-T--------------------ATC-TCAAATCGCTCTTGCATATCC-----CCATT--ATCGTGCTCT-CTCT-C-TATCTCTCTCTCT----A--------------TCAATCTCAATTTCAATATCAATCTTAAGCTCCTTAACT--CGACTC-----TCTGT----------------------------CTATATATC----CGTCTATATCTAT------ATCTC---GTT----------CGTTAT-----------------CT
droEre2 scaffold_4770:16344811-16345129 - CGATTCCGATCCGGAAAATGAACAAACTAAACGCTCACATTTCAGTTCCGGTAAGTTG---------------------------ACCAAA---ATCCA-ATCCAAATCCA-AATC-AA------------------------------------------AATTCCAA-AACAAA-ATT-------------C-----------------------------------------------------------A----AATTC-------AAATTCAAAT------------------C------GAAATCGAATCCCA--------------------ATTCATTTC---GCCAGCAGAA---------------------------G------------------------------------------------GAAG-AAATCGAAATATG-T--------------------ATC-TCAAATCGCTCTTGCATATCC-----CCATT--ATCGTGCTCT-CTCT-C-TCTCTCTCTTTCT----A--------TCAATCTCAATCTCAATTTCGATATCAATCTTAAGCTCCTCAACTCTCGACGC---------------------------------------------TC----TGTCTATATCTAT------ATCTC---GTT----------CGTTATC------------TAT-CT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
CGATTCCGATCCGGAAAATGAACAAACTAAACGCTCACATTTCAGTTCCGGTAAGTTG---------------------------ATCAAA---ATCCAAATCCAA--------------------------------------------------------------------------------------------------------TTC---ATACAAAAAAAAAA----AA---------------------------------------------------------------------------------------------------------------------------AA----GAAA--GAAAGAA----AAGAAAGAAAGAA--CAGACCA-GA---------AAATCAG---------AAATGAAAAGAAACAGAAA---A-T--------------------ATT-TC-AATCGCTCTTGCATATTC------CATT--ATCGTGCTCT-CTAT-C-TCTCTCTCTCTC------------------------------------------------------------------------------TCTATCTACCT------------------------C--TCTCTCTAT--C--T------CTATC---GTT----------CGTTAT-----------------CTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............................ACGCTCACATTTCAGTTCCGGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020100001000
................................GCTCACATTTCAGTTCCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
............GGAAAATGAACAAACTAAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.GATTCCGATCCGGAAAATGAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
.............................AACGCTCACATTTCAGTTCCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
.......GATCCGGAAAATGAACAAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
............................AAACGCTCACATTTCAGTTCCGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
............................AAACGCTCACATTTCAGTTCCGGATC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
.....CCGATCCGGAAAATGAACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
...............................CGCTCACATTTCAGTTCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
...............AAATGAACAAACTAAACGCTCAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
........................AACTAAACGCTCACATTTCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.........................ACTAAACGCTCACATTTCAGTTCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
......................CAAACTAAACGCTCACATTTCAGTTCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000000
.GATTCCGATCCGGAAAATGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
............................AAACGCTCACATTTCAGTTCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
...............................CGCTCACATTTCAGTTCCGGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010000000
droPer2
CGATTCCGATCCGGAAAATGAACAAACTAAACGCTCACATTTCAGTTCCGGTAAGTTG---------------------------ATCAAA---ATCCAAATCCAA--------------------------------------------------------------------------------------------------------TTC---ATACAAAAAAAAA----------------------------------------------------------------------------------------------------------------------------------AA----GAAA--GAAAGAA----AAGAAAGAAAGAA--CAGACCAAGA---------AAATCAG---------AAATGAAAAGAAACAGAAA---A-T--------------------ATT-TC-AATCGCTCTTGCATATTC------CATT--ATCGTGCTCT-CTAT-C-TCTCTCTCTCTCT----A----------------------------------------------------------------------------TCTACCT------------------------C--TCTCTCT--ATC--T------CTCTC---GTT----------CGTTAT-----------------CTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...............................CGCTCACATTTCAGTTCCGGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2216.006600000
..................................TCACATTTCAGTTCCGGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1921.503300000
..ATTCCGATCCGGAAAATGAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
..............................ACGCTCACATTTCAGTTCCGGAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
................................GCTCACATTTCAGTTCCGGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
.GATTCCGATCCGGAAAATGAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
...............AAATGAACAAACTAAACGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
...............................CGCTCACATTTCAGTTCCGGATC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2321.002200000
..............................ACGCTCACATTTCAGTTCCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
..ATTCCGATCCGGAAAATGAACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
................AATGAACAAACTAAACGCTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
...........................TAAACGCTCACATTTCAGTTCCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
...................................CACATTTCAGTTCCGGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1850.804400000
droWil2
CGATTCCGATCCGGAAAATGAACAAACTAAACGCTCACATTTCAGTTCCGGTAAGTTTTCAAAAAAAAAAAAAAAAAAACAAAAAACCAAAGAAATTCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATCCAAATCGAAA-AAAA-A-----GAGAAACCATAATCAAATCCCA------AG----------AAATTCATGTC---AT-ACAAGAA---------------------------G------------------------------------------------TAAA-AAACAGAAA---A-TGTTATAGTAAAATAATTTCAATT-TC-AATCGCTCTTGCATATGC------CATT--ATCGTGCTCT-CTCT-C-TCTCTCTATTTCT----C------------------------------------------------------------------------------T----CTCTCT------------CTCTCTC----TGTCT--ATCTAT------GTCTC------------------T----------------TAT-CTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........TCCGGAAAATGAACAAACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00220000
................AATGAACAAACTAAACGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00220000
.........TCCGGAAAATGAACAAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000
...................................CACATTTCAGTTCCGGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000
...................GAACAAACTAAACGCTCACATTTCAGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000
...................GAACAAACTAAACGCTCACATTTCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000
CGATTCCGATCCGGAAAATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
................AATGAACAAACTAAACGCTCACATTTCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000
.....CCGATCCGGAAAATGAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000
...................GAACAAACTAAACGCTCACATTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000
........................AACTAAACGCTCACATTTCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
..............AAAATGAACAAACTAAACGCTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
.....................................CATTTCAGTTCCGGTAAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100
.......................AAACTAAACGCTCACATTTCAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000
...............AAATGAACAAACTAAACGCTCACATTTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000
..........CCGGAAAATGAACAAACTAAACGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00110000
....................................................................................................................................................................................................................................................................................................................................................................................................G------------------------------------------------TAAA-AAACAGAAA---A-TGT............................................................................................................................................................................................................................................................................1811.00100010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---A-TGTTATAGTAAAATAATTTCAA.........................................................................................................................................................................................................................................................2411.00100010
.....CCGATCCGGAAAATGAACAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
......................CAAACTAAACGCTCACATTTCAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100
droVir3
CGATTCCGATCCGGAAAATGAACAAACTAAACGCTCACATTTCAGTTCCGGTAAGTTT---------------------------TGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATTTC---AAAAAAAAAAAAAAAAAA-CAAAAAAA----AAAAACAGAAAAA--CAAAAAA-AAAAACC---------AAAGTAC---ATAAT-GAGG--------AATAAG-------------------TAAATT-TC-AATCGCTTTTACATATACTACTATCATA--ATCGTGCTCT-TTGT-C-TCTATCTAA--C----TA----------------------------------------------------------------------------TC----------------------------------TATC------TAT------CT-----------------------------CT----ATCTAT-ATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................AACGCTCACATTTCAGTTCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002000000000000000002000000000000000000000000000000000000000000000
.GATTCCGATCCGGAAAATGAACAAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000010
................................GCTCACATTTCAGTTCCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
..ATTCCGATCCGGAAAATGAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000000000000000000000000000000000000000000000000000000000000
...............AAATGAACAAACTAAACGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000010000000000000000000000000000000000000000
.........................ACTAAACGCTCACATTTCAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.................ATGAACAAACTAAACGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000000000000000000000000000000000000000000000000000000000000
...............AAATGAACAAACTAAACGCTCACATTTCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001001000000000000000000000000000000000000000000000000000000000000
.................ATGAACAAACTAAACGCTCACATTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000001000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTACTATCATA--ATCGTGCTC............................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000100
...............AAATGAACAAACTAAACGCTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.GATTCCGATCCGGAAAATGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000100000000000000000000000000000000000000000000000
...TTCCGATCCGGAAAATGAACAAACTAAACGCTCACATTTCAGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................4411.001000000000000000000000000000000000000000000000000000000000100000
...................GAACAAACTAAACGCTCACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
...........................TAAACGCTCACATTTCAGTTCCGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
...............AAATGAACAAACTAAACGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.GATTCCGATCCGGAAAATGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000100000000000000000000000000000000
........ATCCGGAAAATGAACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1611.001000000000000000000000000000000000000000000000000000000010000000
..ATTCCGATCCGGAAAATGAACAAACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000000000000000000000000000000000000000000000000000000000000
......CGATCCGGAAAATGAACAAACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000100000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAA-CAAAAAAA----AAAA.....................................................................................................................................................................................................................................................................................................................................................23200.102002000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAA-CAAAAAAA----AAAAA....................................................................................................................................................................................................................................................................................................................................................23200.102000100000000000000000000000010000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................TTTC---AAAAAAAAAAAAAAAA........................................................................................................................................................................................................................................................................................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAA-CAAAAAAA----AAAA.....................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000100000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................AAAAAA-CAAAAAAA----AAAAACA..................................................................................................................................................................................................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAA-CAAAAAAA----AAA......................................................................................................................................................................................................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAA-CAAAAAAA----A........................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000000000000000000000000000000000000001
droMoj3
CGATTCAGATCCGGAAAATGAACAAACTAAACGCTCACATTTCAGTTCCGGTAAGTTT---------------------------TGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATTTG---AAAAACAAAAAAACAAAATCGAAAAAAATATAAAAACAAAAAACCCCAAAACA-AAAATCCAA--A------AGTAC---GAAAT-G--------TGAAATAAG-------------------CAAATT-TC-AATCGCTTTTACATATACTACTATCATT--ATCGTGCTCC-TTGT-C-TCTAACTAT--C----AA----------------------------------------------------------------------------TCTATCTATCGA------------------ACTATCTAA-TTTATCTAT------CT--C---------------------------A----ATCTAT-CTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
......................CAAACTAAACGCTCACATTTCAGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
........................AACTAAACGCTCACATTTCAGTTCCGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
droGri2
CGATTCCGATCCGGAAAATGAACAAACAAAACGCTCACATTTCAGTTCCGGTAAGTTT---------------------------TGCAA----ATCAA-ATCCAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATTTG---AA---------------------------------------------------------CCAAATA------AGTACCACATAAT-GAGC--------AATGAG-------------------CAAATT-TC-AATCGCTTTTACATATACTACTATCATT--ATCGTGCTCT-CTCT-A-TCTCTCTCTCTCT----A------------------------------------------------------------------------CCT--------------------------ATCTATC----TGTCTA--TCTAT------CTATC-----------------------TATCT----ATCTAT-CTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.....CCGATCCGGAAAATGAACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110
droAna3
CGATTCCGATCCGGAAAATGAACAAACTAAACGCTCACATTTCAGTTCCGGTAAGTTC-------------------------AAACCAAA---ATCCA-A----AATCCAAAATC-GA------------------------------------------AAATCCAA-AA---A-ATC-C----------TCAAAATCAGT-------------------------------------------------------------------------AAATCAGAA-AAATT----------------------ATCCCA------AAAAAAAAAAAAAAATTCATTTC---AAAAGCAGAA---------------------------G-----------------------------------------------------AAACAGAAA---A-T--------------------ATT-TC-AATCGCTCTTGCATATCC------CATT--ATCGTGCTCT-CTCT-T-TCTCTCTAT--C----TA----------------------------------------------------------------------------TCTCTCTC----------------------TC----TCTCTAT--C--T------CTGTCTCTGTTTGAAAAAAAAAGATATATATAT----ATCCGT-CTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................TGAACAAACTAAACGCTCACATTTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
.........................................................................................................................................................................................................GT-------------------------------------------------------------------------AAATCAGAA-AAATT----------------------ATCCC.........................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
................................GCTCACATTTCAGTTCCGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGAAA---A-T--------------------ATT-TC-AATCGCTCTTG........................................................................................................................................................................................................................................2611.001010000
.......................................................TTC-------------------------AAACCAAA---ATCCA-A----AATCCAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001001000
...................GAACAAACTAAACGCTCACATC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
droBip1
CGATTCCGATCCGGAAAATGAACAAACTAAACGCTCACATTTCAGTTCCGGTAAGTTG---------------------------ACCAAAAAAATCCA-A----AATCCA-AA--A---------------------------------------ATC-----------------------------------------AGTATCAGTATCCAGTATC--------------------------------------------------CAGT-----------A-TCAGTA-----TC--------AATCGTATCCCAATCCCCA-----------AGATTCATTTCAAAAAAAGCAGAA---------------------------G-----------------------------------------------------ATACAGAAA---A-T--------------------ATT-TC-AATCGCTCTTGCATATCC-----CCATT--ATCGTGCTCT-CTCT-C-TCTCTCTAT------------------------------------------------------------------------------------------------------------ATATAAATC----CGTCT--TTCTAT------ATCTC---GTT----------CGCTATCTA--T----ATCTAT-CTSizeHit CountTotal NormTotal
No Reads
droKik1
CGATTCCGATCCGGAAAATGAACAAACTAAACGCTCACATTTCAGTTCCGGTAAGTTG---------------------------ACCAA----ATCAA-ATC--AATCCA-AA--A---------------------------------------ATCAAAATCCAAA-----------------------------------------TTCAGAATACAAAAAAAAAA----AAAA------AAAAATAGTAAAAGAATTCA-----------------------------------------------TAATCCAA--------------------ATTCATTTC---GAAAGCAGTT---------------AA----AAAATTGGAGTAA--CAGTTTAA--------------------------------GAAG---------A---A-T--------------------ATTGTC-AATCGCTCTTGCATTTAC------CATTATATCGCGCTCT-TCCT-C-TCTGTCTTC--C----TA----------------------------------------------------------------------------TCTCTCTATCCTG------------CTCTATC----TGTCT--ATCTAT------CTCTC---GTT----------CGTTAT-----------------CTSizeHit CountTotal NormTotal
No Reads
droFic1
CGATTCCGATCCGGAAAATGAACAAACTAAACGCTCACATTTCAGTTCCGGTAAGTTG---------------------------ACCAAA---ATCCA-ATCCAAATCCA-AATC-AAAATCAAATTCCAAATCAGATTCCAAATCAAATTTCAAATCGA----------------ATT--------------------------------CCAAATC-------A-AGTTCCGAATCAAATTC--------A----AATTC-------AAATTCAAATCCAAATTCAATACCAAATCG-----AAAATCGAATCCCA--------------------ATTCATTCC---GTCAGCAAAA---------------------------G------------------------------------------------GAAAGAAACGGAAA---A-T--------------------ATC-TCAAATCGCTATTGCATATCC-----CCATT--ATCGTGCTCCTCTCT-A--CTCTC--------------------------------T----------------------------------------------CTGTCTCT--------------------------ATATATC----TGTCTATATCTTT------CTCTC---GTTCGTT------CGTTATCTTTCT----ATCTAT-CTSizeHit CountTotal NormTotal
No Reads
droEle1
CGATTCCGATCCGGAAAATGAACAAACAAAACGCTCACATTTCAGTTCCGGTAAGTTG---------------------------ACCAAA---ATCCA-ATCCAAATC--------AAAT------------------TCCAAATCAAATTTCAAATCAA----------------ATT--------------------------------CCGAATC-------A-AATTCCAAAT------C--------A----AATTC-------AAATTCAAAT------------------C------AATATCGAATCCCA--------------------ATTCATTTC---GCCAGCAGAA---------------------------G------------------------------------------------GAAGAAAACGGAAA---A-T--------------------ATC-TC-AATCGCTCTTGCATATCC-----CCATT--ATCGTGCTCT-CTCT-C-TCCCTTACTCTGT----A-----------------TTCT----------------------------------------------CTGTCTCT--------------------------ATATATC----TGTCTATATCTAT------CTCTC---GA---CT------CGTTATCTA--------TTTAT-CTSizeHit CountTotal NormTotal
No Reads
droRho1
TGATTCCGATCCGGAAAATGAACAAACAAAACGCTCACATTTCAGTTCCGGTAAGTTG---------------------------ACCAAA---ATCCA-ATCCAAATCCG-AATA-AAAT------------------TCCAAATCGAATTCCAAATCAA----------------ATT--------------------------------CCAAATC-------G-AATTCCAAAT------C--------A----AATTC-------AAATTCAAACCCAAA-T-----------C------AATATCGAACCCCA--------------------ATTCATTCC---GCCAGCAGAA---------------------------G------------------------------------------------GAAGGAAACGGAAA---A-T--------------------ATC-TC-AATCGCTCTTGCATATCC-----CCATT--ATCGTGCTCT-CTCT-C-TCTCTCTCTCT----------------------------------------------------CCTCTACT--CTACTCTACTCTCTGTCTCT--------------------------ATATATC----TGTCTATATCTAT------CTCTC---GTT----------CGTTATC------------TAT-CTSizeHit CountTotal NormTotal
No Reads
droBia1
CGATTCCGATCCGGAAAATGAACAAACTAAACGCTCACATTTCAGTTCCGGTAAGTTG---------------------------ACCAAA---ATCCA-ATCCAAATCG--------A------------------------------ATTCCAAATCAAAATTCCAA-AT---------------------C------AATATCGATAT-CCGAA--------------------------------------------TC-------AAGTTCAAAT------------------CA-----AAAATCAACCCCCA--------------------ATTCATTCC---GCCAGCAGAA---------------------------G------------------------------------------------GAAAGAAACCGAAA---ACG--------------------ATC-TCAAATCGCTCTTGCATATCC-----CCATT--ATCGTGCTCT-CTCT-C--CTCTCAATCTCT----A------------------TCT----------------------------------------------CTGCGTCT--------------------------TTCTATC----TGTCTATATCTATCCAAAACTCTC---GTT----------CGTTATCTATCTATCTTTCTAT-CTSizeHit CountTotal NormTotal
No Reads
droTak1
CGATTCCGATCCGGAAAATGAACAAACTAAACGCTCACATTTCAGTTCCGGTAAGTTG---------------------------ACCAAA---ATCCA-ATCCAAATCCA-AATC-AATA------------------TCCAAATCAAATTCCAAATCAA----------------GTT--------------------------------CCGAATC-------A-AATTTCGAAT------C--------A----AATTC-------AAATTCAAAT------------------C------AAAATCGAATCCCA--------------------ATTCATTCC---GCCAGCAGAA---------------------------G------------------------------------------------GAAGGAAACTGAAAA--A-T--------------------ATC-TCAAATCGCTCTTCCATATCC-----CCATT--ATCGTGCTCT-CTCCTCTACTCTCCTTATCT----C------------------------------------------------------------------------------T----CTCTCTCTTTCTCTGTCTATATATC----TGTCTATATCTAT------CTCTC---GTT----------CGTTATCTA--------TCTAT-CTSizeHit CountTotal NormTotal
No Reads
droEug1
CGATTCCGATCCGGAAAATGAACAAACTAAACGCTCACATTTCAGTTCCGGTAAGTTG---------------------------ACCAAA---ATCCAAATCCAAATCCA-AA------A------------------TCCAA-----------------AATTCCAATATCAAAAATTCCAAAAAAACAATCAAAAT---------------------------------TAGA-----------AAAATCAAAAGAATTCAATTTCCAAATTC------------AAAA-----TC------AAAATCGAATCCCA------A-----------AAATTCATTCA-AAGCCAGCAGAA---------------------------G------------------------------------------------GAA-------------------------------------ATC-TCAAATCGCTCTTCCATATCC-----CCATT--ATCGTGCTCT-CTCC-T-CCTCTCTCTCTCTATCTA----------------------------------------------------------------------------TCTCTCTCTCTCTCTTTCTCTGTCTATATATC----TGTCTTTATCTAT------CTATC---GTT----------CGTTATCTACCT----ATCTATCCTSizeHit CountTotal NormTotal
No Reads
dm3
CGATTCCGATCCGGAAAATGAACAAACTAAACGCTCACATTTCAGTTCCGGTAAGTTG---------------------------ACCAAA---ATCCA-ATCCAAATCCA-AATC-AA------------------------------------------AATTCAAA-AT---------------------C-----------------------------------------------------------A----AATTC-------AAATTCAAATCGAAA-TCAATA-----TCG------AAATCGAAACTCA--------------------ATTCATTTC---GCCAGCAGAA---------------------------G------------------------------------------------GAAG-AAATTGAAATATA-T--------------------ATC-TCAAATCGCTCTTGCATATCC-----CCATT--ATCGTGCTCT-CTCT-T-TTTCTCTCTGTC----AATCTCAATCTCGATCTCAATCTCAGTTTCAATATCAATCTTAAGCTCCTCAACT--CGACGC---------------------------------------------TC----TGTGTATATCTAT------CTCTC---GTT----------CGTTATCTA--------TTTAT-CTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................C---GCCAGCAGAA---------------------------G------------------------------------------------GAAG-AAATTGAA.....................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....TCCGATCCGGAAAATGAACAAACTAAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................ACGCTCACATTTCAGTTCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGC---------------------------------------------TC----TGTGTATATCTAT------C.............................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................GCCAGCAGAA---------------------------G------------------------------------------------GAAG-AAATTGAA.....................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TCCGGAAAATGAACAAACTAAACGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....TCCGATCCGGAAAATGAACAAACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......CGATCCGGAAAATGAACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC---------------------------------------------TC----TGTGTATATCTAT------CTCTC---GTT----------CG.......................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
...............AAATGAACAAACTAAACGCTCACATT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................GCTCACATTTCAGTTCCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000
..ATTCCGATCCGGAAAATGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT-CTCT-T-TTTCTCTCTGTC----AAT................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................TTC---GCCAGCAGAA---------------------------G------------------------------------------------GAAG-AAATTGAAA....................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...TTCCGATCCGGAAAATGAACAAACTAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
..............................ACGCTCACATTTCAGTTCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....TCCGATCCGGAAAATGAACAAACTAAACGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCAACT--CGACGC---------------------------------------------TC----TGTGTATATCT......................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.GATTCCGATCCGGAAAATGAACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TCCGGAAAATGAACAAACTAAACGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................CATTTC---GCCAGCAGAA---------------------------G------------------------------------------------GAAG-A............................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
...................................................................................................................................................................................................................................................................................................................................................................GCAGAA---------------------------G------------------------------------------------GAAG-AAATTGA......................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTGCATATCC-----CCATT--ATCGTGCT.............................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.GATTCCGATCCGGAAAATGAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT-CTCT-T-TTTCTCTCTGTC----...................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCT-CTCT-T-TTTCTCTCTGTC----T..................................................................................................................................................................................2170.1410000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................CACATTTCAGTTCCGGCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1870.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CGATTCCGATCCGGAAAATGAACAAACTAAACGCTCACATTTCAGTTCCGGTAAGTTG---------------------------ACCAAA---ATCCA-ATCCAAATCCA-AATC-AA------------------------------------------AATTCCAA-AT---------------------C-----------------------------------------------------------A----AATTC-------AAATTCAAATCGAAA-TCAATA-----TCG------AAATCGAAACCCA--------------------ATTCATTTC---GCCAGCAGAA---------------------------G------------------------------------------------GAAG-AAATCGAAATATA-T--------------------ATC-TCAAATCGCTCTTGCATATCC-----CCATT--ATCGTGCTCT-CTCT-C-TCTCA--ATT----TCAATTTCAATCTCGATCTCAATCTCAGTTTCAATATCAATCTTAAGCTCCTCAACT--CGACTC---------------------------------------------TC----TGTCTATATCTAT------CTCTC---GTT----------CGTTATCTATCT----ATCTAT-CTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............AAAATGAACAAACTAAACGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2114.00403100000000000000
...............AAATGAACAAACTAAACGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.00301200000000000000
......CGATCCGGAAAATGAACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00200200000000000000
.................ATGAACAAACTAAACGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00201100000000000000
................AATGAACAAACTAAACGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00200200000000000000
........ATCCGGAAAATGAACAAACTAAACGCTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000000000000000
......CGATCCGGAAAATGAACAAACTAAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000000000
..............AAAATGAACAAACTAAACGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000000000
..................TGAACAAACTAAACGCTCACATT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010000000000000
.GATTCCGATCCGGAAAATGAACAAACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000000000
........ATCCGGAAAATGAACAAACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000000000
........ATCCGGAAAATGAACAAACTAAACGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000000000
..................................................GTAAGTTG---------------------------ACCAAA---A........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1511.00100000001000000000
...TTCCGATCCGGAAAATGAACAAACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000000000
........ATCCGGAAAATGAACAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
........ATCCGGAAAATGAACAAACTAAACGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCAACT--CGACTC---------------------------------------------TC----TGTCT............................................................2111.00100100000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTAAGCTCCTCAACT--CGACTC---------------------------------------------TC----TGT..............................................................2711.00100100000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATT----TCAATTTCAATCTCGATCTCAATCT............................................................................................................................................................2811.00100010000000000000
............................AAACGCTCACATTTCAGTTCCGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000000001000
..........................................................................................................................................................................................................................................................................................................CG------AAATCGAAACCCA--------------------ATTCATT.............................................................................................................................................................................................................................................................................................................................................................................................2211.00100010000000000000
...........CGGAAAATGAACAAACTAAACGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000000000
......CGATCCGGAAAATGAACAAACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010000000000000
droSec2
CGATTCCGATCCGGAAAATGAACAAACTAAACGCTCACATTTCAGTTCCGGTAAGTTG---------------------------ACCAAA---ATCCA-ATCCAAATCCA-AATC-AA------------------------------------------AATTCCAA-AT---------------------C-----------------------------------------------------------A----AATTC-------AAATTCAAATCGAAA-TCAATA-----TCG------AAATCGAAACCCA--------------------ATTCATTTC---GCCAGCAGAA---------------------------G------------------------------------------------GAAG-AAATCGAAATATA-T--------------------ATC-TCAAATCGCTCTTGCATATCC-----CCATT--ATCGTGCTCT-CTCT-C-AATTTCAATT----TCAATTTCAATCTCGATCTCAATCTCAGTTTCAATATCAATCTTAAGCTCCTCAACC--CAACTC---------------------------------------------TC----TGTCTATATCTAT------CTCTC---GTT----------CGTTATCTATCT----ATCTAT-CTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.....................ACAAACTAAACGCTCACATTTCAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000
droYak3
CGATTCCGATCCGGAAAATGAACAAACTAAACGCTCACATTTCAGTTCCGGTAAGTTG---------------------------ACCAAA---ATCCA-ATCCAAATCCA-AATC-AA------------------------------------------AATTCCAA-ATCAAA-ATT--------------------------------CCAAACC-------AAAATTCCAAAC------CA-------A----AATTC-------AAATTCAAAT------------------C------GAAATCGAATCAAA--------------------ATTCATTTC---GCCAGCAGAA---------------------------G------------------------------------------------GAAG-AAATCGAAATATA-T--------------------ATC-TCAAATCGCTCTTGCATATCC-----CCATT--ATCGTGCTCT-CTCT-C-TATCTCTCTCTCT----A--------------TCAATCTCAATTTCAATATCAATCTTAAGCTCCTTAACT--CGACTC-----TCTGT----------------------------CTATATATC----CGTCTATATCTAT------ATCTC---GTT----------CGTTAT-----------------CTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............AAATGAACAAACTAAACGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00202000000000
...............AAATGAACAAACTAAACGCTCACATT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
......CGATCCGGAAAATGAACAAACTAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00110000000000
.........................................................................................................................................................................................................................................................................................................................ATCAAA--------------------ATTCATTTC---GCCAGCAGAA---------------------------...................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
.................ATGAACAAACTAAACGCTCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................TC---GCCAGCAGAA---------------------------G------------------------------------------------GAAG-AA...........................................................................................................................................................................................................................................................................................1911.00100000010000
............................................GTTCCGGTAAGTTG---------------------------ACCAAA---.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................TC---GCCAGCAGAA---------------------------G------------------------------------------------GAAG-AAATCGAA.....................................................................................................................................................................................................................................................................................2511.00101000000000
................AATGAACAAACTAAACGCTCACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
droEre2
CGATTCCGATCCGGAAAATGAACAAACTAAACGCTCACATTTCAGTTCCGGTAAGTTG---------------------------ACCAAA---ATCCA-ATCCAAATCCA-AATC-AA------------------------------------------AATTCCAA-AACAAA-ATT-------------C-----------------------------------------------------------A----AATTC-------AAATTCAAAT------------------C------GAAATCGAATCCCA--------------------ATTCATTTC---GCCAGCAGAA---------------------------G------------------------------------------------GAAG-AAATCGAAATATG-T--------------------ATC-TCAAATCGCTCTTGCATATCC-----CCATT--ATCGTGCTCT-CTCT-C-TCTCTCTCTTTCT----A--------TCAATCTCAATCTCAATTTCGATATCAATCTTAAGCTCCTCAACTCTCGACGC---------------------------------------------TC----TGTCTATATCTAT------ATCTC---GTT----------CGTTATC------------TAT-CTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................GCCAGCAGAA---------------------------G------------------------------------------------GAAG-AAAT.........................................................................................................................................................................................................................................................................................1911.0010000010
..ATTCCGATCCGGAAAATGAACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
...........................................................................................................................................................................................................................................................................................................................................................C---GCCAGCAGAA---------------------------G------------------------------------------------GAAG-AAAT.........................................................................................................................................................................................................................................................................................2011.0010000100
...............AAATGAACAAACTAAACGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
.........................................................................................................................................................................................................................................................................................................................................................TTC---GCCAGCAGAA---------------------------G------------------------------------------------GAAG-.............................................................................................................................................................................................................................................................................................1811.0010000010
........ATCCGGAAAATGAACAAACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCC-----CCATT--ATCGTGCTCC-..........................................................................................................................................................................................................2111.0010100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCC-----CCATT--ATCGTGCTCT-C.........................................................................................................................................................................................................2211.0010000010
.....................ACAAACTAAACGCTCACAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000000
.....CCGATCCGGAAAATGAACAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
........................AACTAAACGCTCACATTTCAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010001000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-T--------------------ATC-TCAAATCGCTCTTGCAT.....................................................................................................................................................................................................................................2211.0011000000
...........................................................................................................................................................................................................................................................................................................................................................C---GCCAGCAGAA---------------------------G------------------------------------------------GAAG-AAATCGAA.....................................................................................................................................................................................................................................................................................2411.0010000010
...................................CACATTTCAGTTCCGGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1840.2510000010

Generated: 05/17/2015 at 10:07 PM