ID:

dps_3228

 Coordinate:

XR_group8:999103-999253 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-8.7 -8.4 -8.3

Flybase annnotation

exon [dpse_GLEANR_8129:6]; CDS [Dpse\GA28399-cds]; intron [Dpse\GA28399-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AATTAAATGCGGCATTGAAAACTGCACACGCAACACAGATAAAAGCGAGAGAACTAGTCGGGGAAGTCGGGGCAGTGGCACTGCCACTGCCACTGCCACTGCCACTGCCACTGGCACTGGGCAATGGCAATGGCAGTGGGTGAATGTTTCCCAATTCGAGCGTCTGACTAATCTCTATTCCTTTTCCTCTACATTTTACAGCCGAGTCGCACCTACTACTTGGACGATCCCGAGGGCTATGCCATTCACTG
*************************************************************************************************************************.(((((...((((((((..(((((........)))))..)).))).)))....)))))..........************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 M059
embryo
 V112
male body
............................................................................................................................................................................................................................TGGACGATCCCGAGGGCTATGC......... 22 0 1 1.00 1 1 0 0
..........................................................................................................................................................................................................................CTTGGACGATCCCGAGGGCTATGCCA....... 26 0 1 1.00 1 1 0 0
...............................................................................................................................................................................................................CGCACCTACTACTTGGACG......................... 19 0 1 1.00 1 1 0 0
..................................................................................................................................................................................................................ACCTACTACTTGGACGATCCCGAGGGC.............. 27 0 1 1.00 1 1 0 0
.........................................................................................................................................................................AATCTCTATTCCTTTTCCTC.............................................................. 20 0 1 1.00 1 1 0 0
................................................................................................................................................................................................................GCACCTACTACTTGGACGATCCC.................... 23 0 1 1.00 1 1 0 0
.....................................................................................................................................................................................................................TACTACTTGGACGATCCCGAGGGCTAT........... 27 0 1 1.00 1 0 1 0
.........................................................................................................................CAATGGCAATGGCAGTGGGTGA............................................................................................................ 22 0 1 1.00 1 1 0 0
.......................................................................................................................................................................................................................CTACTTGGACGATCCCGAGGGC.............. 22 0 1 1.00 1 1 0 0
.........................................................................................................................CAATGGCAATGGCAGTGGGT.............................................................................................................. 20 0 1 1.00 1 1 0 0
.......................................................................................................................................................................................................................CTACTTGGACGATCCCGAGGGCTA............ 24 0 1 1.00 1 1 0 0
........................................................................................................................GCAATGGCAATGGCAGTGGG............................................................................................................... 20 0 3 0.33 1 1 0 0
...............................................................................................................................CAATGGCAGTTGGAGAATGTGT...................................................................................................... 22 3 4 0.25 1 0 0 1
................................................................................................................................AATGGCAGTTGGAGAATGT........................................................................................................ 19 2 6 0.17 1 0 0 1
...............................................................................................................................CAATGGTAGTTGGCGAATGT........................................................................................................ 20 3 9 0.11 1 1 0 0

Anti-sense strand reads

TTAATTTACGCCGTAACTTTTGACGTGTGCGTTGTGTCTATTTTCGCTCTCTTGATCAGCCCCTTCAGCCCCGTCACCGTGACGGTGACGGTGACGGTGACGGTGACGGTGACCGTGACCCGTTACCGTTACCGTCACCCACTTACAAAGGGTTAAGCTCGCAGACTGATTAGAGATAAGGAAAAGGAGATGTAAAATGTCGGCTCAGCGTGGATGATGAACCTGCTAGGGCTCCCGATACGGTAAGTGAC
**************************************************************.(((((...((((((((..(((((........)))))..)).))).)))....)))))..........************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 GSM343916
embryo
 M059
embryo
 V112
male body
..............................................................................................................................CGTTACCATCAACCTCTTACA........................................................................................................ 21 3 4 0.25 1 1 0 0 0
.................................................................................................................................................................................................AAAGTGTCTGCTCAGCGTGGAT.................................... 22 2 8 0.25 2 1 0 0 1
................................................................................................................CCCTGATCCGTTACCGTTA........................................................................................................................ 19 2 8 0.13 1 0 0 1 0
....................................................................................................................................................................................................ATGTCTGCTCAGCGTGGAT.................................... 19 1 8 0.13 1 0 1 0 0
..................................................CTGGATCCGCCGCTTCAGC...................................................................................................................................................................................... 19 3 10 0.10 1 0 1 0 0
.......................................................................................................................................................GTTATGCTAGCAGCCTGA.................................................................................. 18 3 20 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 XR_group8:999053-999303 - dps_3228 A-----------------------ATTAAATGCGGCATTGAAAACTGCACACGCAACACAGATAAAAG-CGAGAGAACTAGTCGG--GGAAGTCGGGGCAGTGGCACTGCCACTGCCACTGCCACTGCCACTGCCACTGGCACTGGGCAA------------TGGCAATGGCA------GTG-GGTG---------------------------------------------AATG-----------------------TTTCCCAATT-CGAGCGTCTGACTAATCTC-----T--ATTCCT----------------------------------------------------------------------------TTTCCTCTACATTTTACAGCCGAGTCGCACCTACTACTTGGACGATCCCGAGGGCTATGCCATTCACTG
droPer2 scaffold_32:476231-476475 + A-----------------------ATTAAATGCGGCATTGAAAACTGCACACGCAACACAGATAAAAG-CGAGAGAACTAGTCGG--GGAAGTCGGGGCAGTGGCACTGCCACTGCCA------------------CTGGCACTGGGCAATGGCAATGGCAATGGCAGTGGCA------GTG-GGTG---------------------------------------------AATG-----------------------TTTCCCAATT-CGAGCGTCTGACTAATCTC-----T--ATTCCT----------------------------------------------------------------------------TTTCCTCTAAATTTTACAGCCGAGTCGCACCTACTACTTGGACGATCCCGAGGGCTATGCCATTCACTG
droWil2 scf2_1100000004540:2288105-2288184 + T-----------------------CT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-----T--CTCTCT------------------------------------------------------------------------CTCTCTCTC----TCTCTTATAGCCCAATCGCACTTATTATCTAGACGATCCGGAGGGTTATGCCATGAATTG
droVir3 scaffold_13049:2784554-2784854 - dvi_18110 ACAACAACAACAACACACAACTCAATTATATGCGACATTGAAAAGTGCACACGCAACGTAGATAAAAA-CCAACAAA-----AAG--GAAAAACGAAATAAAAGCAAAA----------------------------------TCGACA-------------------------------------------------GCAAAAAAAAAAAAAAAAACGTCGATAATAAACAATAGTTTTTAACGGCCTTTGGTCAC-----------------------ACCGTTTTT-----T--TTTTTTTTTTTTGCACACACTTGTCAGCCAGTTTCTAACTGT--------------A--ACTCTCTCTCTCG------CTCTCTCTC----GCTCTTGCAGCCGAATCGCACCTACTATCTGGACGATCCCGAAGGCTATGCCATACAGTG
droMoj3 scaffold_6654:1125098-1125367 + A-----------------------ATTATATGCGACATTGAAAACTGCACACGCAACACAGATAAAACACAAAAAAACGCATTA----------------------------------------------------------------AA------------------TGACAATAGTTTTT-AATGGCTT-----TC-----------------------------------------------------GGTCACACTTTTTC-ATTCGCACACACACACACATATGCATATG--TATTGTATTTATGCATAG--CT-CTAACCAGTTGCT----GTGCCTTACATACAGTTACACGCTCTCTTACGCTCTCTCTTTCTCTC----TCCGTTGCAGCCCAATCGCACCTACTATCTGGACGATCCCCAAGGCTATGCCATACAGTG
droGri2 scaffold_14853:789691-789795 - G-----------------------GTAC-------------------------------------------------------------------------TGGTACTGGCACTGGCACTGGCACTGGCACTGGCACTGG-------------CAGTGGCAGTGGCAGT-----------------GGCTG-----TGGC----------------------------------------------------------------------T------------------------------------------------------------------------------------------------------------------------GTGGAACCCTATTTACGCCTCTTGCCTGCCTCC----------------------AT
droAna3 scaffold_13337:162731-162902 - A-----------------------ATTAAATGCGGCATTGAAAACTGCACACGCAACAGAGATAAAAA-GCG----A-----------------------------------------------------------CTTGAACTGG--AA------------------TAGGAA-GGGG-TG-AA-GACCTGAAACGAG---------------------------------------------------------------------------CGC-CAACTAATTTG-----TGTATTCTT--------------------------------------------------------------------------------T----TGCATTGCAGCCAAATCGCACCTACTACTTGGATGACCCCGAGGGCTACGCCATCCACTG
droBip1 scf7180000395155:598387-598569 + A-----------------------ATTAAAAGCGGCATTGAGCACTGCACACGCAACACAGATAAAAA-AAT--AGACTTGAA-----------------------------------------------------------CTGGGTGG------------------TGGGAGTGGGGGTG-AA-GACCTGAAACGAG------------------------------------------------------------------------TGCCAACCAACTAATTTG-----T--ATAT-T----------------------------------------------------------------------------TCTTC----CTCGTTGCAGCCAAATCGCACCTACTACCTGGACGATCCCGAGGGCTATGCCATTCACTG
droKik1 scf7180000297950:222414-222481 - G-----------------------GCAC-------------------------------------------------------------------------TGGCACTGGCACTGGCACTGGCACTGGCACTGGCACTGG-------------CACTGGCACTGGCACTGGCACTGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000454105:267668-267859 - A-----------------------ATTA-GTGCGGCATTGAAAACTGCACACGCAACGCAGATAAAAA-CTT--GAACTTGTCCGCGGGA---------------------------------------------------ACGCGACTA------------------TGGGAATGGGGCTG-AGAGACCT-----TAGCAAG--------------------------------------------------------------------AGCAAGAGAACTAATTTC-----C--CCTC---------------------------------------------------------------------------TCCTTCGT----TCCATTGCAGCCAAATCGCACCTACTACCTGGACGATCCCGAGGGCTACGCCATCCACTG
droEle1 scf7180000491249:226350-226493 - A-----------------------ATTAAATGCGGCATTGAAAACTGCACACGCAACGAAGATAA------------------------------------------------------------------------------------------------------------------------TGATTA-----TGGC----------------------------------------------------------------------GGAAAGCTTAACCAATTTC-----C--CTTC---------------------------------------------------------------------------TATTTTGC----TTCATTGCAGCCAAATCGCACCTACTACCTGGACGATCCCGAGGGCTACGCCATCCACTG
droRho1 scf7180000762853:113415-113590 - A-----------------------ATTAAATGCGGCATTGAAAACTGCACACGCAACGCAGATAAAAA-CTT--AAACTTGCCCG------------------------------------------------------------------------------------GGGAATGTGTTTC-AATGATTT-----CAAC----------------------------------------------------------------------GAATAGCCCAACTAATTTC-----T--GTTC---------------------------------------------------------------------------TCGTTTGT----TCCATTGCAGCCAAATCGAACCTACTACTTGGACGATCCCGAGGGATACGCCATCCACTG
droBia1 scf7180000300910:220921-221102 - A-----------------------ATTAAGTGCGGCATTGAAAACTGCACACGCAACACAGATAAAAA-CTT--AAACTTGTCCG------------------------------------------------------------GACAA------------------TGGGAATGGGGTTG-AGTGATTT-----TTGC----------------------------------------------------------------------CGAGAGCCATACTAATTTC-----C--CTTC---------------------------------------------------------------------------TCTTTGGT----TCCATTGCAGCCAAATCGCACCTACTACCTGGACGATCCCGAGGGCTACGCCATCCACTG
droTak1 scf7180000413899:114999-115169 - A-----------------------ATTAAATGCGGCATTGAAAACTGCACACGCAACGCAGATAAAAA-CTT--AAACTCGTAGC------------------------------------------------------------------------------------GGGAATGGGGTTTCAATGATTT-----TAG---------------------------------------------------------------------------CGC-CAACTAATTTG-----C--ATTC---------------------------------------------------------------------------TCTTCTTC----TCGATTGCAGCCAAATCGCACCTACTACCTGGACGACCCCGAGGGCTATGCCATCCACTG
droEug1 scf7180000409184:199885-200060 - A-----------------------ATTAAATGCGGCATTGAAAACTGCACACGCAACGCAGATAAAAC-CTT--AAACTTGTCCG------------------------------------------------------------------------------------GGGAATGGGGTTG-AATGATTT-----TAGT----------------------------------------------------------------------GGAGAGCCAAACTAATTTC-----C--CTTC---------------------------------------------------------------------------TCTTTTGC----TTTATTGCAGCCAAATCGCACCTATTACCTGGACGATCCGGAGGGCTACGCCATCCACTG
dm3 chr3L:143395-143564 + A-----------------------ATTAAATGCGGCATTGAAAACTGCACACGCAAGGCAGATAAAAA-CTC--AAACTTGTTTG------------------------------------------------------------------------------------GTGAATGGGTTTAA----------AATTAGC----------------------------------------------------------------------GTTGCGCTCAACTAATTTT--------ACTCTT----------------------------------------------------------------------------TTGGT----TTCATTGCAGCCAAATCGAACCTATTACCTGGATGATCCCGAAGGCTATGCTATCCACTG
droSim2 3l:113683-113852 + A-----------------------ATTAAATGCGGCATTGAAAACTGCACACGCAAGGCAGATAAAAA-CTC--AAACTTGTCTG------------------------------------------------------------------------------------GTGAATGGGGTTAA----------AATTAGC----------------------------------------------------------------------GTTCCGCTCAACTAATTTT--------ACTCTT----------------------------------------------------------------------------TTGGT----TTCATTGCAGCCAAATCGAACCTATTACCTGGATGATCCCGAAGGCTATGCTATCCACTG
droSec2 scaffold_2:162763-162932 + A-----------------------ATTAAATGCGGCATTGAAAACTGCACACGCAAGGCAGATAAAAA-CTC--AAACTTGTCTG------------------------------------------------------------------------------------GTGAATGGGGTTAA----------AATTAGC----------------------------------------------------------------------GTTCCGCTCAACTAATTTT--------ACTCTT----------------------------------------------------------------------------TTGGT----TTCATTGCAGCCAAATCGAACCTATTACCTGGATGATCCCGAAGGCTATGCTATCCACTG
droYak3 3L:113360-113529 + A-----------------------ATTAAATGCGGCATTGAAAACTGCACACGCAAGGCAGATAAAAA-CTT--AAACTTGTCTG------------------------------------------------------------------------------------GTGAATGGGGTTAA----------ATTTAGC----------------------------------------------------------------------GTTGCGCTCAACTAATTTT--------ATTCTT----------------------------------------------------------------------------TCGGT----TCCATTGCAGCCAAATCGCACCTACTACCTGGATGATCCCGAAGGCTATGCAATCCACTG
droEre2 scaffold_4784:122828-122998 + A-----------------------ATTAAATGCGGCATTGAAAACTGCACACGCAAGGCAGATAAAAA-CTT--AAACTTGTCTG------------------------------------------------------------------------------------GTGAATGAGGTTAA----------ATTTAGC----------------------------------------------------------------------GTTGCGCTCAACTAATTTT-----T--TTTGTT----------------------------------------------------------------------------TTGGT----TCCATTGCAGCCAAATCGCACCTACTACCTGGATGATCCCGAAGGCTATGCAATCCACTG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
A-----------------------ATTAAATGCGGCATTGAAAACTGCACACGCAACACAGATAAAAG-CGAGAGAACTAGTCGG--GGAAGTCGGGGCAGTGGCACTGCCACTGCCACTGCCACTGCCACTGCCACTGGCACTGGGCAA------------TGGCAATGGCA------GTG-GGTG---------------------------------------------AATG-----------------------TTTCCCAATT-CGAGCGTCTGACTAATCTC-----T--ATTCCT----------------------------------------------------------------------------TTTCCTCTACATTTTACAGCCGAGTCGCACCTACTACTTGGACGATCCCGAGGGCTATGCCATTCACTGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................................................................................................................................................................................................................................................................................................................................................................................................................................TGGACGATCCCGAGGGCTATGC.........2211.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................CTTGGACGATCCCGAGGGCTATGCCA.......2611.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................CGCACCTACTACTTGGACG.........................1911.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................ACCTACTACTTGGACGATCCCGAGGGC..............2711.0010100000000
...........................................................................................................................................................................................................................................................................................AATCTC-----T--ATTCCT----------------------------------------------------------------------------TTTCCTC..............................................................2011.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................GCACCTACTACTTGGACGATCCC....................2311.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................TACTACTTGGACGATCCCGAGGGCTAT...........2711.0010010000000
...................................................................................................................................................CAA------------TGGCAATGGCA------GTG-GGTG---------------------------------------------A.......................................................................................................................................................................................................................2211.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................CTACTTGGACGATCCCGAGGGC..............2211.0010100000000
...................................................................................................................................................CAA------------TGGCAATGGCA------GTG-GGT......................................................................................................................................................................................................................................................................2011.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................CTACTTGGACGATCCCGAGGGCTA............2411.0010100000000
..................................................................................................................................................GCAA------------TGGCAATGGCA------GTG-GG.......................................................................................................................................................................................................................................................................2030.3310100000000
droPer2
A-----------------------ATTAAATGCGGCATTGAAAACTGCACACGCAACACAGATAAAAG-CGAGAGAACTAGTCGG--GGAAGTCGGGGCAGTGGCACTGCCACTGCCA------------------CTGGCACTGGGCAATGGCAATGGCAATGGCAGTGGCA------GTG-GGTG---------------------------------------------AATG-----------------------TTTCCCAATT-CGAGCGTCTGACTAATCTC-----T--ATTCCT----------------------------------------------------------------------------TTTCCTCTAAATTTTACAGCCGAGTCGCACCTACTACTTGGACGATCCCGAGGGCTATGCCATTCACTGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....................................................................................................................................................................................................................................................................................................................................................................................................................CGCACCTACTACTTGGAC..........................18110.00101000000
..................................................................................................................................................................................................................................................................................................................................................................................................................GTCGCACCTACTACTTGGAC..........................2015.005500000
.....................................................................................................................................................................................................................................................................................................................................................................................................................GCACCTACTACTTGGACG.........................1814.004400000
....................................................................................................................................................................................................................................................................................................................................................................................................................CGCACCTACTACTTGGACG.........................1911.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................CTTGGACGATCCCGAGGGCTA............2111.001010000
..................................................................................................................................................................TGGCAGTGGCA------GTG-GGTG---------------------------------------------AATG-----------------------TT...........................................................................................................................................................................................2411.001010000
..................................................................................................................................................................................................................................................................................................................................................................................................................GTCGCACCTACTACTTGGACG.........................2111.001100000
...................................................................G-CGAGAGAACTAGTCGG--GGAAGTCGGGG..............................................................................................................................................................................................................................................................................................................................................................2811.001000001
droWil2
T-----------------------CT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-----T--CTCTCT------------------------------------------------------------------------CTCTCTCTC----TCTCTTATAGCCCAATCGCACTTATTATCTAGACGATCCGGAGGGTTATGCCATGAATTGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................ATCTAGACGATCCGGAGGGTT.............2111.00100100
...................................................................................................................................................................................................................................................................................................................................................................................................................................GACGATCCGGAGGGTTATGC.........2011.00100100
..........................................................................................................................................................................................................................................................................................................................................................................................................................TATTATCTAGACGATCCGGAG.................2111.00100100
...................................................................................................................................................................................................................................................................................................................................................................................................................................GACGATCCGGAGGGTTATGCCATGAAT..2711.00110000
......................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCGGAGGGTTATGCCATGAA...2311.00100100
....................................................................................................................................................................................................................................................................................................................................................................................................................CGCACTTATTATCTAGACG.........................1911.00110000
droVir3
ACAACAACAACAACACACAACTCAATTATATGCGACATTGAAAAGTGCACACGCAACGTAGATAAAAA-CCAACAAA-----AAG--GAAAAACGAAATAAAAGCAAAA----------------------------------TCGACA-------------------------------------------------GCAAAAAAAAAAAAAAAAACGTCGATAATAAACAATAGTTTTTAACGGCCTTTGGTCAC-----------------------ACCGTTTTT-----T--TTTTTTTTTTTTGCACACACTTGTCAGCCAGTTTCTAACTGT--------------A--ACTCTCTCTCTCG------CTCTCTCTC----GCTCTTGCAGCCGAATCGCACCTACTATCTGGACGATCCCGAAGGCTATGCCATACAGTGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................CGCACCTACTATCTGGAC..........................1812.002010000000000000000000000000000000000100000000000000000000000000
.........................TTATATGCGACATTGAAAAGTGCA...............................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000001000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................CGCACCTACTATCTGGACGAT.......................2111.001000000000000000000000000000000000000000000000000000000000001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................ACGATCCCGAAGGCTATGCC........2011.001000000000000001000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................TGCACACACTTGTCAGCCAGT.......................................................................................................................2111.001000000000000000000000000000000000000001000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................CTACTATCTGGACGATCCCGAAGG...............2411.001000000000000000000000000000000000000100000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................TCGCACCTACTATCTGGAC..........................1911.001100000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................CTACTATCTGGACGATCCCGAAGGCTATGCCATAC....3511.001000000000000000000000000000000000000000000000000000000000010000
................................................................................................................................................CGACA-------------------------------------------------GCAAAAAAAAAAAAAA..........................................................................................................................................................................................................................................2120.501000000000000000000000000000000000000000000000000000000000000010
.......................................................................................................................................................................................................................................................................................................................................................................................CTCTCTCTC----GCTCTTGCAG..................................................1940.251000000000000000000000000000000000010000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................G------CTCTCTCTC----GCTCTTGCAGAAA...............................................2350.201001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................TCTCTCG------CTCTCTCTC----GCTCT.......................................................21200.102000002000000000000000000000000000000000000000000000000000000000
droMoj3
A-----------------------ATTATATGCGACATTGAAAACTGCACACGCAACACAGATAAAACACAAAAAAACGCATTA----------------------------------------------------------------AA------------------TGACAATAGTTTTT-AATGGCTT-----TC-----------------------------------------------------GGTCACACTTTTTC-ATTCGCACACACACACACATATGCATATG--TATTGTATTTATGCATAG--CT-CTAACCAGTTGCT----GTGCCTTACATACAGTTACACGCTCTCTTACGCTCTCTCTTTCTCTC----TCCGTTGCAGCCCAATCGCACCTACTATCTGGACGATCCCCAAGGCTATGCCATACAGTGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................CTTTCTCTC----TCCGTTGCA...................................................1811.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................TGGACGATCCCCAAGGCTATGC.........2211.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................CGCACCTACTATCTGGACG.........................1911.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGACGATCCCCAAGGCTATGCC........2411.001100000
.......................................................................................................................................................................................................................................................................................................................................................TACATACAGTTACACGCT.......................................................................................1811.001000010
............................................................................................................................................................................................................................................................................................................................................................................................TCTC----TCCGTTGCAGCCCAATCGCACC......................................2611.001000010
........................................................................................................................................................................................................................................................................................................................................................................................TTTCTCTC----TCCGTTGCAGA.................................................1911.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................GACGATCCCCAAGGCTAT...........1811.001001000
droGri2
G-----------------------GTAC-------------------------------------------------------------------------TGGTACTGGCACTGGCACTGGCACTGGCACTGGCACTGG-------------CAGTGGCAGTGGCAGT-----------------GGCTG-----TGGC----------------------------------------------------------------------T------------------------------------------------------------------------------------------------------------------------GTGGAACCCTATTTACGCCTCTTGCCTGCCTCC----------------------ATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..............................................................................................................................................................GCAGTGGCAGT-----------------GGCTG-----TG..........................................................................................................................................................................................................................................................18100.10110
droAna3
A-----------------------ATTAAATGCGGCATTGAAAACTGCACACGCAACAGAGATAAAAA-GCG----A-----------------------------------------------------------CTTGAACTGG--AA------------------TAGGAA-GGGG-TG-AA-GACCTGAAACGAG---------------------------------------------------------------------------CGC-CAACTAATTTG-----TGTATTCTT--------------------------------------------------------------------------------T----TGCATTGCAGCCAAATCGCACCTACTACTTGGATGACCCCGAGGGCTACGCCATCCACTGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACCCCGAGGGCTACGCCATC.....2411.001010000
...............................................................................................................................................................................GGGG-TG-AA-GACCTGAAACGAG---------------------------------------------------------------------------CGC-..........................................................................................................................................................................2411.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................ATCGCACCTACTACTTGGAT..........................2011.001010000
.............................................................................................................................................ACTGG--AA------------------TAGGAA-GGGG-TG-AA-GACC..................................................................................................................................................................................................................................................................2511.001000010
...................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACCCCGAGGGCTACGCCATCCACC.2811.001010000
.................................................................................................................................................................................GG-TG-AA-GACCTGAAACGAG---------------------------------------------------------------------------C.............................................................................................................................................................................2011.001100000
..........................................................................................................................................TGAACTGG--AA------------------TAGGAA-GGGG-TG-AA-GA....................................................................................................................................................................................................................................................................2611.001000010
....................................................................................................................................................................................................................................................................................................................................................................................................................CGCACCTACTACTTGGATGACCCCGAGGG...............2911.001010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................GACCCCGAGGGCTACGCCATCCACTG2611.001100000
droBip1
A-----------------------ATTAAAAGCGGCATTGAGCACTGCACACGCAACACAGATAAAAA-AAT--AGACTTGAA-----------------------------------------------------------CTGGGTGG------------------TGGGAGTGGGGGTG-AA-GACCTGAAACGAG------------------------------------------------------------------------TGCCAACCAACTAATTTG-----T--ATAT-T----------------------------------------------------------------------------TCTTC----CTCGTTGCAGCCAAATCGCACCTACTACCTGGACGATCCCGAGGGCTATGCCATTCACTGSizeHit CountTotal NormTotal
No Reads
droKik1
G-----------------------GCAC-------------------------------------------------------------------------TGGCACTGGCACTGGCACTGGCACTGGCACTGGCACTGG-------------CACTGGCACTGGCACTGGCACTGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
A-----------------------ATTA-GTGCGGCATTGAAAACTGCACACGCAACGCAGATAAAAA-CTT--GAACTTGTCCGCGGGA---------------------------------------------------ACGCGACTA------------------TGGGAATGGGGCTG-AGAGACCT-----TAGCAAG--------------------------------------------------------------------AGCAAGAGAACTAATTTC-----C--CCTC---------------------------------------------------------------------------TCCTTCGT----TCCATTGCAGCCAAATCGCACCTACTACCTGGACGATCCCGAGGGCTACGCCATCCACTGSizeHit CountTotal NormTotal
No Reads
droEle1
A-----------------------ATTAAATGCGGCATTGAAAACTGCACACGCAACGAAGATAA------------------------------------------------------------------------------------------------------------------------TGATTA-----TGGC----------------------------------------------------------------------GGAAAGCTTAACCAATTTC-----C--CTTC---------------------------------------------------------------------------TATTTTGC----TTCATTGCAGCCAAATCGCACCTACTACCTGGACGATCCCGAGGGCTACGCCATCCACTGSizeHit CountTotal NormTotal
No Reads
droRho1
A-----------------------ATTAAATGCGGCATTGAAAACTGCACACGCAACGCAGATAAAAA-CTT--AAACTTGCCCG------------------------------------------------------------------------------------GGGAATGTGTTTC-AATGATTT-----CAAC----------------------------------------------------------------------GAATAGCCCAACTAATTTC-----T--GTTC---------------------------------------------------------------------------TCGTTTGT----TCCATTGCAGCCAAATCGAACCTACTACTTGGACGATCCCGAGGGATACGCCATCCACTGSizeHit CountTotal NormTotal
No Reads
droBia1
A-----------------------ATTAAGTGCGGCATTGAAAACTGCACACGCAACACAGATAAAAA-CTT--AAACTTGTCCG------------------------------------------------------------GACAA------------------TGGGAATGGGGTTG-AGTGATTT-----TTGC----------------------------------------------------------------------CGAGAGCCATACTAATTTC-----C--CTTC---------------------------------------------------------------------------TCTTTGGT----TCCATTGCAGCCAAATCGCACCTACTACCTGGACGATCCCGAGGGCTACGCCATCCACTGSizeHit CountTotal NormTotal
No Reads
droTak1
A-----------------------ATTAAATGCGGCATTGAAAACTGCACACGCAACGCAGATAAAAA-CTT--AAACTCGTAGC------------------------------------------------------------------------------------GGGAATGGGGTTTCAATGATTT-----TAG---------------------------------------------------------------------------CGC-CAACTAATTTG-----C--ATTC---------------------------------------------------------------------------TCTTCTTC----TCGATTGCAGCCAAATCGCACCTACTACCTGGACGACCCCGAGGGCTATGCCATCCACTGSizeHit CountTotal NormTotal
No Reads
droEug1
A-----------------------ATTAAATGCGGCATTGAAAACTGCACACGCAACGCAGATAAAAC-CTT--AAACTTGTCCG------------------------------------------------------------------------------------GGGAATGGGGTTG-AATGATTT-----TAGT----------------------------------------------------------------------GGAGAGCCAAACTAATTTC-----C--CTTC---------------------------------------------------------------------------TCTTTTGC----TTTATTGCAGCCAAATCGCACCTATTACCTGGACGATCCGGAGGGCTACGCCATCCACTGSizeHit CountTotal NormTotal
No Reads
dm3
A-----------------------ATTAAATGCGGCATTGAAAACTGCACACGCAAGGCAGATAAAAA-CTC--AAACTTGTTTG------------------------------------------------------------------------------------GTGAATGGGTTTAA----------AATTAGC----------------------------------------------------------------------GTTGCGCTCAACTAATTTT--------ACTCTT----------------------------------------------------------------------------TTGGT----TTCATTGCAGCCAAATCGAACCTATTACCTGGATGATCCCGAAGGCTATGCTATCCACTGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................TACCTGGATGATCCCGAAGGCTATGC.........2614.0040000000000000000000000000000000000000001000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000
..........................................................................................................................................................................................................................................................................................TAATTTT--------ACTCTT----------------------------------------------------------------------------TTGGT----TTCATTGCAG..................................................2814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000100
...................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATCCCGAAGGCTATGCT........2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATGATCCCGAAGGCTATG..........2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
................................................................................................................................................................................................................................................................................................T--------ACTCTT----------------------------------------------------------------------------TTGGT----TTCATTGCAG..................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATGATCCCGAAGGCTATGC.........2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................TACCTGGATGATCCCGAAGGCTATGCTA.......2812.0020000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................ACCTGGATGATCCCGAAGG...............1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................CTCTT----------------------------------------------------------------------------TTGGT----TTCATTGCAG..................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................ACCTGGATGATCCCGAAGGCTATGCT........2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGATGATCCCGAAGGCT.............1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................TTACCTGGATGATCCCGAAGGCTATGC.........2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................ACCTGGATGATCCCGAAGGCT.............2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................TCTT----------------------------------------------------------------------------TTGGT----TTCATTGCAG..................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGATGATCCCGAAGGCTATGCTATC.....2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002
............................................................................................................................................................................................................................................................................................................CTT----------------------------------------------------------------------------TTGGT----TTCATTGCAG..................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATGATCCCGAAGGCTATGCTAT......2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATGATCCCGAAGGCTATGCTATC.....2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATCCCGAAGGCTATGCTATCCACT.2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCCCGAAGGCTATGCTATC.....2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................TTACCTGGATGATCCCGAAGGCT.............2311.0010000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................G------------------------------------------------------------------------------------GTGAATGGGTTTAA----------AATTAGC----------------------------------------------------------------------G.................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCCGAAGGCTATGCTATCC....2111.0010000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................CGAACCTATTACCTGGATG.........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................TATTACCTGGATGATCCCGAAGGC..............2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................ATTACCTGGATGATCCCGAAGGCTAT...........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................AACTTGTTTG------------------------------------------------------------------------------------GTGAATGGG..............................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATGATCCCGAAGGCTATGCT........2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..................................................................................TTG------------------------------------------------------------------------------------GTGAATGGGTTTAA----------AATTAG.........................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..........................................................................AAACTTGTTTG------------------------------------------------------------------------------------GTGAATGGGT.............................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................TTTT--------ACTCTT----------------------------------------------------------------------------TTGGT----TTCATTGCAG..................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................ACCTGGATGATCCCGAAGGCTATG..........2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................ATTACCTGGATGATCCCGAAGGC..............2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................TACCTGGATGATCCCGAAGGCTAACG.........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................TTACCTGGATGATCCCGAAGGCTAT...........2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
....................................................................................................................................................................................................................................................................................................................................................................................................TTCATTGCAGCCAAATCGAAC.......................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................GTGAATGGGTTTAA----------AATTAGC----------------------------------------------------------------------..................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................TCGAACCTATTACCTGGATGA........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................TT--------ACTCTT----------------------------------------------------------------------------TTGGT----TTCATTGCA...................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGATGATCCCGAAGGCTATA..........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGATCCCGAAGGCTATGCTATC.....2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................ATTACCTGGATGATCCCGAAGGCT.............2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................AATCGAACCTATTACCTGGAT..........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................A-CTC--AAACTTGTTTG------------------------------------------------------------------------------------GTGAATGGGT.............................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
................................................................................................................................................................................GGTTTAA----------AATTAGC----------------------------------------------------------------------GTTGCG............................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................TTT--------ACTCTT----------------------------------------------------------------------------TTGGT----TTCATTG.....................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGATCCCGAAGGCTATGCTAT......2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................CACGCAAGGCAGATAAAAA-CTC--AAA...................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................TTACCTGGATGATCCCGAAGGC..............2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATCCCGAAGGCTATGCTA.......2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATCCCGAAGGCTATG..........1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................TTGTTTG------------------------------------------------------------------------------------GTGAATGGGTTTAA----------AATTAGC----------------------------------------------------------------------..................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................GAACCTATTACCTGGATGATCCCGAAGGC..............2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
A-----------------------ATTAAATGCGGCATTGAAAACTGCACACGCAAGGCAGATAAAAA-CTC--AAACTTGTCTG------------------------------------------------------------------------------------GTGAATGGGGTTAA----------AATTAGC----------------------------------------------------------------------GTTCCGCTCAACTAATTTT--------ACTCTT----------------------------------------------------------------------------TTGGT----TTCATTGCAGCCAAATCGAACCTATTACCTGGATGATCCCGAAGGCTATGCTATCCACTGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................................AAAA-CTC--AAACTTGTCTG------------------------------------------------------------------------------------GTGA...................................................................................................................................................................................................................................................................................2211.00100010000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................ACCTATTACCTGGATGATCCCGAAGGCT.............2811.00100010000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................CAAATCGAACCTATTACCTGGAT..........................2311.00100010000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGCCAAATCGA.........................................15120.08100000000001000000
droSec2
A-----------------------ATTAAATGCGGCATTGAAAACTGCACACGCAAGGCAGATAAAAA-CTC--AAACTTGTCTG------------------------------------------------------------------------------------GTGAATGGGGTTAA----------AATTAGC----------------------------------------------------------------------GTTCCGCTCAACTAATTTT--------ACTCTT----------------------------------------------------------------------------TTGGT----TTCATTGCAGCCAAATCGAACCTATTACCTGGATGATCCCGAAGGCTATGCTATCCACTGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGATCCCGAAGGCTAT...........1911.0010010
.......................................................................C--AAACTTGTCTG------------------------------------------------------------------------------------GTGAATGG...............................................................................................................................................................................................................................................................................2011.0010010
............................................................................ACTTGTCTG------------------------------------------------------------------------------------GTGAATGGGGT............................................................................................................................................................................................................................................................................2011.0010010
.......................................................................................................................................................................................................................................................................................................................................................................................................................ACCTATTACCTGGATGATCCCGAAGGCT.............2811.0010100
droYak3
A-----------------------ATTAAATGCGGCATTGAAAACTGCACACGCAAGGCAGATAAAAA-CTT--AAACTTGTCTG------------------------------------------------------------------------------------GTGAATGGGGTTAA----------ATTTAGC----------------------------------------------------------------------GTTGCGCTCAACTAATTTT--------ATTCTT----------------------------------------------------------------------------TCGGT----TCCATTGCAGCCAAATCGCACCTACTACCTGGATGATCCCGAAGGCTATGCAATCCACTGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................................................................................................................................................................................................................................................................T--------ATTCTT----------------------------------------------------------------------------TCGGT----TCCATTGC....................................................2011.00100000100000
....................................................................................................................................................................................................................................................................................................................................................................................................................CGCACCTACTACCTGGATGATCCC....................2411.00101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................ACTACCTGGATGATCCCGAAGGCT.............2411.00101000000000
droEre2
A-----------------------ATTAAATGCGGCATTGAAAACTGCACACGCAAGGCAGATAAAAA-CTT--AAACTTGTCTG------------------------------------------------------------------------------------GTGAATGAGGTTAA----------ATTTAGC----------------------------------------------------------------------GTTGCGCTCAACTAATTTT-----T--TTTGTT----------------------------------------------------------------------------TTGGT----TCCATTGCAGCCAAATCGCACCTACTACCTGGATGATCCCGAAGGCTATGCAATCCACTGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATGATCCCGAAGGCTATGCAATCCACA.3014.0040000004
.................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATGATCCCGAAGGCTATGCA........2313.0031000200
...........................................................................................................................................................................................................................................................................................................................................................................................................................ACTACCTGGATGATCCCGAAGGCTATGCA........2911.0010000100
....................................................................................................................................................................................................................................................................................................................................................................................................................CGCACCTACTACCTGGATGATCCCG...................2511.0011000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCCGAAGGCTATGCAATCCACT.2411.0010000100
..............................................................................................................................................................................................................................................................................................TTT-----T--TTTGTT----------------------------------------------------------------------------TTGGT----TCCATTGCAG..................................................2511.0010000010

Generated: 05/18/2015 at 06:22 AM