ID:

dps_3217

 Coordinate:

XR_group8:721267-721417 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dpse\GA21956-cds]; exon [dpse_GLEANR_8164:2]; intron [Dpse\GA21956-in]

Repeatable elements

NameClassFamilyStrand
(TATG)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GGTGCTGGCGTCTTGGCCTCCATTCCCCATGGACTCTATGCCAAGGCTTTGTAAGTTCCATATAGCACCTACCATTTATACAGTATGCATGCAGTATTTAGTATAGAATACATATATATACATACATACATACATATATGCCGGTTTGTTCATCTATGGCGCCGCCTGATTGCCATTGATGAATGGCTTACACGATATCGCTGCGATCTCGTGCGCGAAATACGAAAATAGCTCAAAGCTGTCTCTCTCTC
**************************************************(((((((.............(((...((((..(((((.(((..((((...(((((.......)))))))))...))).))))).))))....)))..(((((((.((((((.........)))))).))))))))))))))..........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 M062
head
 V112
male body
GGTACTAGCGTCTTAGCCT........................................................................................................................................................................................................................................ 19 3 2 3.00 6 6 0 0
.................................................................................................................................................................................................................CGTGCGCGAAATACGAAAATAGCT.................. 24 0 1 1.00 1 1 0 0
.....................ATTCCCCATGGACTCTAT.................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0
.........................................................................................................................................ATGCCGGTCTGTTCATCTATG............................................................................................. 21 1 1 1.00 1 1 0 0
....................................................................................................................................................................................................ATCGCTGCGATCTCGTGCGC................................... 20 0 1 1.00 1 1 0 0
...............................GACTCTATGCCAAGGCTTTGTCC..................................................................................................................................................................................................... 23 2 1 1.00 1 1 0 0
...........................CATGGACTCTATGCCAAGGC............................................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0
...............................GACTCTATGCCAAGGCTTTC........................................................................................................................................................................................................ 20 1 1 1.00 1 0 1 0
......GGCGTCTTGGCCTGCATTCCCCATG............................................................................................................................................................................................................................ 25 1 1 1.00 1 1 0 0
...................CCATTCCCCATGGACTCTATGCC................................................................................................................................................................................................................. 23 0 1 1.00 1 1 0 0
.............................TGGACTCAATGCCAAGGCGTT......................................................................................................................................................................................................... 21 2 10 0.70 7 5 0 2
..............................GGACTCAATGCCAAGGCGTTGT....................................................................................................................................................................................................... 22 2 2 0.50 1 1 0 0
...............................................................................CCAGCATGCATGCAGTATT......................................................................................................................................................... 19 2 2 0.50 1 1 0 0
..............................GGACTCAATGCCAAGGCGTTG........................................................................................................................................................................................................ 21 2 11 0.36 4 3 0 1
.............................TGGACTCAGTGCCAAGGCGTT......................................................................................................................................................................................................... 21 3 13 0.31 4 2 0 2
..............................GGACTCAATGCCAAGGCGTT......................................................................................................................................................................................................... 20 2 11 0.18 2 2 0 0
GGTACTAGCGTCTTAGCC......................................................................................................................................................................................................................................... 18 3 15 0.13 2 2 0 0
.............................TGGACTCAATGCCAAGGCGT.......................................................................................................................................................................................................... 20 2 11 0.09 1 1 0 0
.............................TGGACTCAGTGCCAAGGCGT.......................................................................................................................................................................................................... 20 3 19 0.05 1 1 0 0

Anti-sense strand reads

CCACGACCGCAGAACCGGAGGTAAGGGGTACCTGAGATACGGTTCCGAAACATTCAAGGTATATCGTGGATGGTAAATATGTCATACGTACGTCATAAATCATATCTTATGTATATATATGTATGTATGTATGTATATACGGCCAAACAAGTAGATACCGCGGCGGACTAACGGTAACTACTTACCGAATGTGCTATAGCGACGCTAGAGCACGCGCTTTATGCTTTTATCGAGTTTCGACAGAGAGAGAG
**************************************************(((((((.............(((...((((..(((((.(((..((((...(((((.......)))))))))...))).))))).))))....)))..(((((((.((((((.........)))))).))))))))))))))..........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 GSM343916
embryo
CCATGATCGCAGAATCGGA........................................................................................................................................................................................................................................ 19 3 2 5.50 11 11 0
......................................................................................................................................................GTAGGTAGCGCGGCGGACT.................................................................................. 19 2 1 1.00 1 1 0
.................................................................................................................................TATGTATATACGGCCAAACAA..................................................................................................... 21 0 1 1.00 1 1 0
.......................TTGGGTACCTGAGATACGGTT............................................................................................................................................................................................................... 21 2 1 1.00 1 1 0
.....................................................................................................................................................CGTAGGTAGCGCGGCGGACTA................................................................................. 21 3 1 1.00 1 1 0
......................................................................................................................................................GTAGGTAGCGCGGCGGACTA................................................................................. 20 2 1 1.00 1 1 0
.....................................................................................................................................................CGTAGGTAGCGCGGCGGACT.................................................................................. 20 3 3 0.33 1 1 0
.................................................................................................................................................................GGCGGACAAACGGTAACTC....................................................................... 19 2 4 0.25 1 1 0
....................................................................................................................................................................................................................................ATCTAGTTTCGACCGAGAGT... 20 3 11 0.09 1 0 1
...........................................................................................................................................................TACCGATGCGGTCTAACGG............................................................................. 19 3 15 0.07 1 1 0
CCATGATCGCAGAATCGG......................................................................................................................................................................................................................................... 18 3 15 0.07 1 1 0
............AACGGGAGGTTAGGGGTGC............................................................................................................................................................................................................................ 19 3 20 0.05 1 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 XR_group8:721217-721467 - dps_3217 GGTGCTGGCGTCTTGGCCTCCATTCCCCATGGACTCTATGCCAAGGCTTTGTAAGTT-CCATATAG-CACCTACCATTTATACAGTATGCATGCAGTATTTAGTATAGAATACATATATATAC---------------------------------------------------------------------ATACAT-----------------------------------ACATA--------CA----------TATATGCCGGTTTG--TTCATCTATG------GC----------------GCCGCCTGATTGCCATTGATGAA-----TG----GCTTACAC-------------------------------------------------------------------------------------------GATATCGCTGCGATCTCGTGCGCGAAATA-----------CGAAAATAGCTCAAAGCTGTC--TCTCTCTC
droPer2 scaffold_32:761793-762035 + GGTGCTGGCGTCTTGGCCTCCATTCCCCATGGACTCTATGCCAAGGCTTTGTAAGTT-CCATATAG-CACCTACCATTTATACAGTATGCATGCAGTATTTAGTATAGAATAC------AT-----------------------------------------------------------------------ATACAT-----------------------------------ACATA--------CA----------TATATGCCGGTTTG--TTCATCTATG------GC----------------GCCGCCTGATTGCCATTGATGAA-----TG----GCTTACAC-------------------------------------------------------------------------------------------GATATCGCTGCGATCTCGTGCGCGAAATA-----------CGAAAATAGCTCAAAGCTGTC--TCTCTCTC
droWil2 scf2_1100000004729:2378094-2378308 + GGTGCTGGCGTTTTGGCTTCCATTCCCCACGGACTCTATGCCAAGGCTCTGTAAGTT-TT-TTAACACATTT----CTCT---------------------------------------ATTCTCTATC------------------------------------C--------------------------TTACAT-----------------------------------ATGTA--------TG----------CACATGCCGGTTGCCAT-----TTTG------GC----------------G-----------CCATTGATAAA---------TAGCTTACACG--------------GATCTAGACATC------------------------------------------------------------CGACCATAACGTTGCAATCTCGTGCGCGAAACAAAAAGTTTATTTAAAAATAGCACAAA----------------
droVir3 scaffold_13049:8460767-8460989 - dvi_18995 GGCGCTGGTGTCTTGGCTTCCATTCCGCACGGACTCTATGCCAAGGCTCTGTAAGTT-C-ACATT------------------------------------------------------------------------------C-----------------------------------------------------------------------------TATGCCCGAGTGGTGCAGGGAGGCTT------GGGGGC------------------------GGACTTGGCAAAGTTACAGCT--TTGCCG----GCTGCCATTGATGAATGTCTCGAACAGCGGACACATAACATA-------CGTCAACCATGTTGACGATGT------------------------G---------------------------CGCGATATCGCGGCGATCTCGTGCGCGAAATA-----------CAAA---------------------------
droMoj3 scaffold_6680:12108000-12108224 - GGCGCTGGTGTATTGGCTTCCATTCCTCACGGGCTCTATGCCAAGGCTCTGTAAGTT-T-ACAT----------------------------------------------------------------C--------------GTAGATAGGAATAGGT----CTG------------ACTAG--------------------------------------------------GGGTG--------AAGTCATGCGGGCACA--------------------TGCACTTGGCAACTTTACAGCTATTTGCCG----GCTGCCATTGATGAA-----TG----TCTTAAACG------------------TTGTTGAC-------G-------------------------------------------ATG---A--CGGCGATATCGCTGCGATCTCGTGCGCGAAATA-----------CAAAAACAAAACAAA----------------
droGri2 scaffold_15110:7485291-7485493 - GGCGCTGGTGTATTGGCTTCCATTCCGCACCGACTCTATGCCAAGGCTCTGTAAGTT-T-ACTTATTT---------------------------------------------------TTAT-----T---------------------TATATGTGTACATCTAT---------T-------------------------------------------------------------------------------------GGGGGGTTCA--------TTTGCACTTGGCAGC--------A--CTGCAG----CATGCCATTGATTAG-----TGTT--------ATT--------------TGTCTTGTC------------------------------------------------------------------TGAGATCGCGCCGATCTCGTGCGCGAAATG-----------CACAAATAGTTGAATGCTTTC----------
droAna3 scaffold_13337:13816122-13816362 + GGTGCTGGCGTTTTGGCTTCCATTCCTCACGGACTCTATGCCAAGGCCCTGTAAGTT-CCACCTAAAA---------------------------------------------------AACT-----A-TATATGTTTTCTTT----------------TATATGTAGTGTAAACAAAATGT--------------------------------------------------ATGCT--------TA----------AATATGCCGGTTCC--------TCTG------GC----------------GCCGTC-----GCCAT--------------------TTACACG--------------GGATCTGTCTAG-------G----------------------------A-GG-GGGA-----ACTGACAGCAGAACGATATCGGTGCGATCTCGTGCGCGAAATA-----------CGAAAATAGCTCAAAGCTGCTGCT-------
droBip1 scf7180000395832:757559-757814 + GGTGCTGGCGTTTTGGCTTCCATTCCTCACGGACTCTATGCCAAGGCCCTGTAAGTT-CCACCTAAAAAAATACTATAT----------------------------------------ATCT-----A-TATGTGTATT-TTT----------------TATATATAGTGTAAACAAA-------------ATATAT-----------------------------------ATGCT--------TA----------TATATGCCGGTTCC--------TCTG------GC----------------GCCGTA-----GCCAT--------------------TTACACG--------------GGATCTGTCTAG-------GG--------------------------------GGGAAGAGACCTGACTGTAGAACGATATCGGGGCGATCTCGTGCGCGAAATA-----------CGAAAATAACTCAAAGCTGCTGCT-------
droKik1 scf7180000302486:605829-606102 - GGCGCTGGCGTCTTGGCTTCCATTCCTCACGGACTCTATGTCAAGGCTCTGTAAGTT-CTACCTATAA---------------------------------------------------GAT------CC-------------G------TACATATGTACT--------------CAAA----------------------AC-----------ACATACTATATATGCATGGTGCT--------TA----------TTTATGCCGGTTCC--------TCTG------GC----------------GCCGTC-----GCCATTGATGAA-----CGAACCGCTTACACG--------------GGACCTGTCTGC-------GGGTTAGACTGACTGGCAGTGGAGGCG-CT-GG-GGGA------AAA---GCGAGACGATATCGGTGCGATCTCGTGCGCGAAATA-----------CGAAAATAGTTTAGAGCTG------------
droFic1 scf7180000453839:2187261-2187504 - GGCGCTGGCGTCTTGGCTTCCATTCCTCACGGACTCTACTTCAAGGCTCTGTAAGTT-CAACCTCTGT---------------------------------------------------ATACTACATA--------------C------TACATATGTACAAACAT---------AAAATAT--------------------------------------------------ATGTT--------TA----------CTGATGCCGGTTCC--------TCTG------GC----------------GCCGTC-----GCCACTGATGAA-----CAGACCGCTTACACG--------------GGACCTGTCGAT-------GG------------------------G-CA-GGGGGGC------AAA---GTGAGACGATATCGCCGCGATCTCGTGCGCGAAATA-----------CAAAAATAGCTCAAAGCTG------------
droEle1 scf7180000491255:3220200-3220437 - GGCGCTGGCGTCTTGGCTTCCATTCCTCATGGACTCTATTTCAAGGCTCTGTAAGTT-CCAACCATAT---------------------------------------------------ATTT---------------------------TACATAGGTACTGCCAT---------TAAATAT--------------------------------------------------ATGTT--------TA----------TTTATGCCGGTTCC--------TCTG------GC----------------GCCGTC-----GCCATTGAGGAA-----TGAACTGCTCACACG--------------GGACCTGTCGAT-------GG------------------------G-CC-GG-GGGT------ATA---GCGAAACGATATCGCCGCGATCTCGTGCGCGAAATA-----------CGTAAATAGCTCAAAGCTGTC----------
droRho1 scf7180000778301:90863-91105 - GGCGCTGGCGTCTTGGCTTCCATTCCTCACGGACTCTATTTCAAGGCTCTGTAAGTT-CCACCTATAC---------------------------------------------------ATAT-----AA-------------G------TACATATGTAAAACCAT---------TAAATAT--------------------------------------------------ATGTT--------TA----------TTTATGCCGGTTCC--------TCTG------GC----------------GCCGTC-----GCCATTGAGGAA-----TGAACTGCTCACACG--------------GGACCTGTCTAT-------GG------------------------GGATGGG-GGGT------ATA---GCTAAACAATATCGCCGCAATCTCGTGCGCGAAATA-----------CGAAAATAGCTCAAAGCTGTC----------
droBia1 scf7180000302428:3319562-3319788 + GGCGCTGGCGTCTTGGCTTCCATTCCTCACGGACTCTATTTCAAGGCTCTGTAAGTT-T-ACCTATGT--------GTCGGACAGC--------------AAG-------------------------------------------------------------CTT---------AAAATAT--------------------------------------------------ATGTT--------TA----------TATATGCCGGTTCC--T-----TCTG------GC----------------GCCGTC-----GCCATTGATGAT----------CGCTTACACG--------------GGACCCGTCGAT-------GG------------------------G-ACAGG-GGGC------GTA---GCGAAACAATAGCGGGGCGATCTCGTGCGCGAAATA-----------CGAAAATAACTCAAAGCTG------------
droTak1 scf7180000415352:573806-573966 + GGCGCTGGCGTCTTGGCTTCCATTCCTCACGGACTCTATTTCAAGGCTCTGTAAGTT-CCACCCATGT---------------------------------------------------ATAT-----A---------------------AAGATATGTATAAGCAT---------TGAATAT--------------------------------------------------ATGCT--------TA----------TTTATGCCGGTTCC--------TCTG------GC----------------GCCGTC-----GCCATTGATGAA-----CGAACCGCTTACACG--------------GGACC----------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000409711:547640-547883 + GGCGCTGGCGTCTTGGCTTCCATTCCTCACGGACTTTATTCCAAGGCTCTGTAAGTTATCACTAATTT------------------------------TTAAGTTT----------------------------------------------------------------------AAAATATATGTTAAATATATAT-----------------------------------ACATT--------AA----------CTTATGCCGGTTTC--------TCTG------GC----------------GCCGTT-----GCCATTGATGAA-----CGAACCGCTTACACG--------------GGACCTGTCGTT-------GG-----ATA----------------GGCCAGG-GGGC------TGA---GAGAAACGATATCGCTGCGATCTCGTGCGCGAAATA-----------CGAAAATAGCTCAAAGCTG------------
dm3 chr3L:16791946-16792194 - GGCGCTGGCGTCTTGGCTTCCATTCCTCACGGACTCTACTCGAAGGCTCTGTAAGTA-TCACTAATAT---------------------------------------------------ATTT-----A-------------------------TATATATAGATATAGCA---------------TCGAATATACAT-----------------------------------ATGTT--------TA----------TTTGTGCCGGTTCC--------TCTG------GC----------------A-----------CCATTGATGAA-----CGAACTGCTTACACGGAAC---GAACACGGGACTTGTCGAT-------GG------------------------G-CA-GG-GTGA-----AATG---ACGGAGCAATATCGCCGCGATCTCGTGCGCGAAATA-----------CGAAAATAGCTCAAAGCTGT-----------
droSim2 3l:16382778-16383024 - dsi_12592 GGCGCTGGCGTCTTGGCTTCCATTCCTCACGGACTCTACTCCAAGGCACTGTAAGTA-TCACTAATAT---------------------------------------------------ATAT-----A----------------------ACATCTATATAGATATAGTA---------------TCGAATATACAT-----------------------------------ATGTT--------TA----------TTTGTGCCGGTTCC--------TCTG------GC----------------GCCGTC-----GCCATTGATGAA-----CGAACTGCTTACACGGAAC-------ACGGGACTTGTTGGT-------GG------------------------G-CA-GG-GGG-----------------AGCGATATCGCCGTGATCTCGTGCGCGAAATA-----------CGAAAATAGCTCAAAGCTGCC--T-------
droSec2 scaffold_0:8863295-8863538 - GGCGCTGGCGTCTTGGCTTCCATTCCTCACGGACTCTACTCCAAGGCACTGTAAGTA-TCACTAATAT---------------------------------------------------ATAT-----A----------------------ACATATATATAGCTAT-----------AGTAT--------------------------------------------------ATGTT--------TA----------CTTGTGCCGGTTCC--------TCTG------GC----------------GCCGTC-----GCCATTGATGAA-----CGAACTGCTTACACGGAAC-------ACGGGACTTGTTGGT-------GG------------------------G-CA-GG-GGGC------ATG---GCGGAGCGATATCGCCGCGATCTCGTGCGCGAAATA-----------CGAAAATAGCTCAAAGCTGCC--T-------
droYak3 3L:17276163-17276427 + GGCGCTGGCGTCTTGGCTTCCATTCCTCACGGACTCTACTTCAAGGCTCTGTAAGTT-CCCCAAATGT---------------------------------------------------ATAT-----T--------------G------TACATATGTATGTACAT---------TAAA----------------------AG-----------ATATAGTATAG------TGTGTT--------TA----------TTTATGCCGGTTCC--------TCTG------GC----------------GCCGTC-----GCCATTGATGAG-----CGAACTGCTTACACGGGACATGGGGCACGGGACTAGTTGGT-------GG------------------------G-CC-GG-GGGT------GTG---GCGAAACGATATTGCCGCGATCTCGTGCGCGAAATA-----------CGAAAATAACTCAAAGCTGCC----------
droEre2 scaffold_4784:17041771-17042039 + GGCGCTGGCGTCTTGGCTTCCATTCCTCACGGACTCTACTTCAAGGCTCTGTAAGTT-CC-CTCATAT---------------------------------------------------ATAC------------------------------ATAT----AG-------------AAAGTA-------------CATAACAAGTTGGGCATCGCATATCGTATAG------TGTGTT--------TA----------TTTATGCCGGTTCC--------TCTG------GC----------------GCCGTC-----GCCATTGATGAA-----CGAACTGCTTACACGGGACATGGGGCACGGGACTTGTTGGT-------GG------------------------G-TC-GG-GGGT------GTG---GCGCAACAATATCGCCGCGATCTCGTGCGCGAAATC-----------CGAAAATAGCTCAAAGCTG------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
GGTGCTGGCGTCTTGGCCTCCATTCCCCATGGACTCTATGCCAAGGCTTTGTAAGTT-CCATATAG-CACCTACCATTTATACAGTATGCATGCAGTATTTAGTATAGAATACATATATATAC---------------------------------------------------------------------ATACAT-----------------------------------ACATA--------CA----------TATATGCCGGTTTG--TTCATCTATG------GC----------------GCCGCCTGATTGCCATTGATGAA-----TG----GCTTACAC-------------------------------------------------------------------------------------------GATATCGCTGCGATCTCGTGCGCGAAATA-----------CGAAAATAGCTCAAAGCTGTC--TCTCTCTCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGCGCGAAATA-----------CGAAAATAGCT....................2411.0010100000000
.....................ATTCCCCATGGACTCTAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGCTGCGATCTCGTGCGC................................................2011.0010100000000
...............................GACTCTATGCCAAGGCTTTGTCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
...........................CATGGACTCTATGCCAAGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...............................GACTCTATGCCAAGGCTTTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001000000
...................CCATTCCCCATGGACTCTATGCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
droPer2
GGTGCTGGCGTCTTGGCCTCCATTCCCCATGGACTCTATGCCAAGGCTTTGTAAGTT-CCATATAG-CACCTACCATTTATACAGTATGCATGCAGTATTTAGTATAGAATAC------AT-----------------------------------------------------------------------ATACAT-----------------------------------ACATA--------CA----------TATATGCCGGTTTG--TTCATCTATG------GC----------------GCCGCCTGATTGCCATTGATGAA-----TG----GCTTACAC-------------------------------------------------------------------------------------------GATATCGCTGCGATCTCGTGCGCGAAATA-----------CGAAAATAGCTCAAAGCTGTC--TCTCTCTCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..............................GGACTCTATGCCAAGGCTTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
droWil2
GGTGCTGGCGTTTTGGCTTCCATTCCCCACGGACTCTATGCCAAGGCTCTGTAAGTT-TT-TTAACACATTT----CTCT---------------------------------------ATTCTCTATC------------------------------------C--------------------------TTACAT-----------------------------------ATGTA--------TG----------CACATGCCGGTTGCCAT-----TTTG------GC----------------G-----------CCATTGATAAA---------TAGCTTACACG--------------GATCTAGACATC------------------------------------------------------------CGACCATAACGTTGCAATCTCGTGCGCGAAACAAAAAGTTTATTTAAAAATAGCACAAA----------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........................CCCCACGGACTCTATGCCAAGGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00110000
........................................................................................................................................................................................................................................................................................................................................................TTACACG--------------GATCTAGACATC------------------------------------------------------------C..........................................................................2011.00110000
.......................................................................................................................................................................................................................................................................................................................................................CTTACACG--------------GATCTAGACATC------------------------------------------------------------...........................................................................2011.00100010
......................TTCCCCACGGACTCTATGCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
...................CCATTCCCCACGGACTCTATGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000
.......................TCCCCACGGACTCTATGCCAAGGCTCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000
.....................ATTCCCCACGGACTCTATGCCAAGGCTCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00101000
......................TTCCCCACGGACTCTATGCCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100
droVir3
GGCGCTGGTGTCTTGGCTTCCATTCCGCACGGACTCTATGCCAAGGCTCTGTAAGTT-C-ACATT------------------------------------------------------------------------------C-----------------------------------------------------------------------------TATGCCCGAGTGGTGCAGGGAGGCTT------GGGGGC------------------------GGACTTGGCAAAGTTACAGCT--TTGCCG----GCTGCCATTGATGAATGTCTCGAACAGCGGACACATAACATA-------CGTCAACCATGTTGACGATGT------------------------G---------------------------CGCGATATCGCGGCGATCTCGTGCGCGAAATA-----------CAAA---------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................TCCATTCCGCACGGACTCTAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000001000000000000000000000000000000000000000000
................CTTCCATTCCGCACGGACTCTAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
.....................ATTCCGCACGGACTCTATGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000001000000000000000000000000000000000
............TTGGCTTCCATTCCGCACGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.........GTCTTGGCTTCCATTCCGCACGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000001
.GCGCTGGTGTCTTGGCTTCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000100000000000000000000000000000000000000000000000000000000000
.........GTCTTGGCTTCCATTCCGCACGGACT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
............TTGGCTTCCATTCCGCACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.......................TCCGCACGGACTCTATGCCAAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
..................TCCATTCCGCACGGACTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGCGGCGATCTCGTGCGC................................................2011.001000000000000000000100000000000000000000000000000000000000000000
...............GCTTCCATTCCGCACGGACT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000010000000000000000000000000000
...........CTTGGCTTCCATTCCGCACGGACTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000100000
......................TTCCGCACGGACTCTATGCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
GGCGCTGGTGTATTGGCTTCCATTCCTCACGGGCTCTATGCCAAGGCTCTGTAAGTT-T-ACAT----------------------------------------------------------------C--------------GTAGATAGGAATAGGT----CTG------------ACTAG--------------------------------------------------GGGTG--------AAGTCATGCGGGCACA--------------------TGCACTTGGCAACTTTACAGCTATTTGCCG----GCTGCCATTGATGAA-----TG----TCTTAAACG------------------TTGTTGAC-------G-------------------------------------------ATG---A--CGGCGATATCGCTGCGATCTCGTGCGCGAAATA-----------CAAAAACAAAACAAA----------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.....................ATTCCTCACGGGCTCTATGCCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
.................TTCCATTCCTCACGGGCTCTATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
..........................................................................................................................................................................................................................................................................................TGCACTTGGCAACTTTACAGCTATTTGCC.........................................................................................................................................................................................................2911.001000010
.........GTATTGGCTTCCATTCCTCACGGGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
.........GTATTGGCTTCCATTCCTCACGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
droGri2
GGCGCTGGTGTATTGGCTTCCATTCCGCACCGACTCTATGCCAAGGCTCTGTAAGTT-T-ACTTATTT---------------------------------------------------TTAT-----T---------------------TATATGTGTACATCTAT---------T-------------------------------------------------------------------------------------GGGGGGTTCA--------TTTGCACTTGGCAGC--------A--CTGCAG----CATGCCATTGATTAG-----TGTT--------ATT--------------TGTCTTGTC------------------------------------------------------------------TGAGATCGCGCCGATCTCGTGCGCGAAATG-----------CACAAATAGTTGAATGCTTTC----------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
GGTGCTGGCGTTTTGGCTTCCATTCCTCACGGACTCTATGCCAAGGCCCTGTAAGTT-CCACCTAAAA---------------------------------------------------AACT-----A-TATATGTTTTCTTT----------------TATATGTAGTGTAAACAAAATGT--------------------------------------------------ATGCT--------TA----------AATATGCCGGTTCC--------TCTG------GC----------------GCCGTC-----GCCAT--------------------TTACACG--------------GGATCTGTCTAG-------G----------------------------A-GG-GGGA-----ACTGACAGCAGAACGATATCGGTGCGATCTCGTGCGCGAAATA-----------CGAAAATAGCTCAAAGCTGCTGCT-------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.GTGCTGGCGTTTTGGCTTCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002000002
...........................CACGGACTCTATGCCAAGGCCCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.002000002
.....................ATTCCTCACGGACTCTATGCCAAGGCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
....................................................................................................................................TATGTTTTCTTT----------------TATATGTAGT......................................................................................................................................................................................................................................................................................................................................................2211.001000010
.GTGCTGGCGTTTTGGCTTCCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCGATCTCGTGCGCGAAATA-----------CGAA...........................2711.001000001
................CTTCCATTCCTCACGGACT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
droBip1
GGTGCTGGCGTTTTGGCTTCCATTCCTCACGGACTCTATGCCAAGGCCCTGTAAGTT-CCACCTAAAAAAATACTATAT----------------------------------------ATCT-----A-TATGTGTATT-TTT----------------TATATATAGTGTAAACAAA-------------ATATAT-----------------------------------ATGCT--------TA----------TATATGCCGGTTCC--------TCTG------GC----------------GCCGTA-----GCCAT--------------------TTACACG--------------GGATCTGTCTAG-------GG--------------------------------GGGAAGAGACCTGACTGTAGAACGATATCGGGGCGATCTCGTGCGCGAAATA-----------CGAAAATAACTCAAAGCTGCTGCT-------SizeHit CountTotal NormTotal
No Reads
droKik1
GGCGCTGGCGTCTTGGCTTCCATTCCTCACGGACTCTATGTCAAGGCTCTGTAAGTT-CTACCTATAA---------------------------------------------------GAT------CC-------------G------TACATATGTACT--------------CAAA----------------------AC-----------ACATACTATATATGCATGGTGCT--------TA----------TTTATGCCGGTTCC--------TCTG------GC----------------GCCGTC-----GCCATTGATGAA-----CGAACCGCTTACACG--------------GGACCTGTCTGC-------GGGTTAGACTGACTGGCAGTGGAGGCG-CT-GG-GGGA------AAA---GCGAGACGATATCGGTGCGATCTCGTGCGCGAAATA-----------CGAAAATAGTTTAGAGCTG------------SizeHit CountTotal NormTotal
No Reads
droFic1
GGCGCTGGCGTCTTGGCTTCCATTCCTCACGGACTCTACTTCAAGGCTCTGTAAGTT-CAACCTCTGT---------------------------------------------------ATACTACATA--------------C------TACATATGTACAAACAT---------AAAATAT--------------------------------------------------ATGTT--------TA----------CTGATGCCGGTTCC--------TCTG------GC----------------GCCGTC-----GCCACTGATGAA-----CAGACCGCTTACACG--------------GGACCTGTCGAT-------GG------------------------G-CA-GGGGGGC------AAA---GTGAGACGATATCGCCGCGATCTCGTGCGCGAAATA-----------CAAAAATAGCTCAAAGCTG------------SizeHit CountTotal NormTotal
No Reads
droEle1
GGCGCTGGCGTCTTGGCTTCCATTCCTCATGGACTCTATTTCAAGGCTCTGTAAGTT-CCAACCATAT---------------------------------------------------ATTT---------------------------TACATAGGTACTGCCAT---------TAAATAT--------------------------------------------------ATGTT--------TA----------TTTATGCCGGTTCC--------TCTG------GC----------------GCCGTC-----GCCATTGAGGAA-----TGAACTGCTCACACG--------------GGACCTGTCGAT-------GG------------------------G-CC-GG-GGGT------ATA---GCGAAACGATATCGCCGCGATCTCGTGCGCGAAATA-----------CGTAAATAGCTCAAAGCTGTC----------SizeHit CountTotal NormTotal
No Reads
droRho1
GGCGCTGGCGTCTTGGCTTCCATTCCTCACGGACTCTATTTCAAGGCTCTGTAAGTT-CCACCTATAC---------------------------------------------------ATAT-----AA-------------G------TACATATGTAAAACCAT---------TAAATAT--------------------------------------------------ATGTT--------TA----------TTTATGCCGGTTCC--------TCTG------GC----------------GCCGTC-----GCCATTGAGGAA-----TGAACTGCTCACACG--------------GGACCTGTCTAT-------GG------------------------GGATGGG-GGGT------ATA---GCTAAACAATATCGCCGCAATCTCGTGCGCGAAATA-----------CGAAAATAGCTCAAAGCTGTC----------SizeHit CountTotal NormTotal
No Reads
droBia1
GGCGCTGGCGTCTTGGCTTCCATTCCTCACGGACTCTATTTCAAGGCTCTGTAAGTT-T-ACCTATGT--------GTCGGACAGC--------------AAG-------------------------------------------------------------CTT---------AAAATAT--------------------------------------------------ATGTT--------TA----------TATATGCCGGTTCC--T-----TCTG------GC----------------GCCGTC-----GCCATTGATGAT----------CGCTTACACG--------------GGACCCGTCGAT-------GG------------------------G-ACAGG-GGGC------GTA---GCGAAACAATAGCGGGGCGATCTCGTGCGCGAAATA-----------CGAAAATAACTCAAAGCTG------------SizeHit CountTotal NormTotal
No Reads
droTak1
GGCGCTGGCGTCTTGGCTTCCATTCCTCACGGACTCTATTTCAAGGCTCTGTAAGTT-CCACCCATGT---------------------------------------------------ATAT-----A---------------------AAGATATGTATAAGCAT---------TGAATAT--------------------------------------------------ATGCT--------TA----------TTTATGCCGGTTCC--------TCTG------GC----------------GCCGTC-----GCCATTGATGAA-----CGAACCGCTTACACG--------------GGACC----------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
GGCGCTGGCGTCTTGGCTTCCATTCCTCACGGACTTTATTCCAAGGCTCTGTAAGTTATCACTAATTT------------------------------TTAAGTTT----------------------------------------------------------------------AAAATATATGTTAAATATATAT-----------------------------------ACATT--------AA----------CTTATGCCGGTTTC--------TCTG------GC----------------GCCGTT-----GCCATTGATGAA-----CGAACCGCTTACACG--------------GGACCTGTCGTT-------GG-----ATA----------------GGCCAGG-GGGC------TGA---GAGAAACGATATCGCTGCGATCTCGTGCGCGAAATA-----------CGAAAATAGCTCAAAGCTG------------SizeHit CountTotal NormTotal
No Reads
dm3
GGCGCTGGCGTCTTGGCTTCCATTCCTCACGGACTCTACTCGAAGGCTCTGTAAGTA-TCACTAATAT---------------------------------------------------ATTT-----A-------------------------TATATATAGATATAGCA---------------TCGAATATACAT-----------------------------------ATGTT--------TA----------TTTGTGCCGGTTCC--------TCTG------GC----------------A-----------CCATTGATGAA-----CGAACTGCTTACACGGAAC---GAACACGGGACTTGTCGAT-------GG------------------------G-CA-GG-GTGA-----AATG---ACGGAGCAATATCGCCGCGATCTCGTGCGCGAAATA-----------CGAAAATAGCTCAAAGCTGT-----------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................ACGGACTCTACTCGAAGGCTCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2216.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
................................ACTCTACTCGAAGGCTCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000001000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................CGGACTCTACTCGAAGGCTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................TCACGGACTCTACTCGAAGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............GCTTCCATTCCTCACGGACT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................A-----------CCATTGATGAA-----CGAACTGCT.......................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.......................TCCTCACGGACTCTACTCGAAGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
GGCGCTGGCGTCTTGGCTTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................TCGAAGGCTCTGTAAGTA-......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................CCATTGATGAA-----CGAACTGCTTACACGGA...............................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................ACGGACTCTACTCGAAGGCTCTTGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................ATTCCTCACGGACTCTACTCGAAGGCTCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........TCTTGGCTTCCATTCCTCACGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................CGGGACTTGTCGAT-------GG------------------------G-CA-GG-GG............................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.............TGGCTTCCATTCCTCACGGACTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................CTCACGGACTCTACTCGAAGGCTCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
......................TTCCTCACGGACTCTACTCGAAGGCTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.........................CTCACGGACTCTACTCGAAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................GGACTCTACTCGAAGGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
......................TTCCTCACGGACTCTACTCGAAGGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..................TCCATTCCTCACGGACTCTACTCGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGATCTCGTGCGCGAA.............................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................CTCTGTAAGTA-TCACTAATAT---------------------------------------------------AT.......................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...GCTGGCGTCTTGGCTTCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................GACTCTACTCGAAGGCTCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................CACGGACTCTACTCGAAGGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................TATAGCA---------------TCGAATATACAT-----------------------------------A......................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
.....................................................................................................................................................................ATAGCA---------------TCGAATATACAT-----------------------------------ATG....................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000
...GCTGGCGTCTTGGCTTCCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................ACGGGACTTGTCGAT-------GG------------------------G-CA-GT-T.............................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
...........CTTGGCTTCCATTCCTCACGGACTCTACTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............TGGCTTCCATTCCTCACGGAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................TCCTCACGGACTCTACTCGAAGGCTCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................TTCCATTCCTCACGGACTCTACTCGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TGGCGTCTTGGCTTCCATTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................CTCACGGACTCTACTCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................CTCTACTCGAAGGCTCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....CTGGCGTCTTGGCTTCCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...................CCATTCCTCACGGACTCTACTCGAAGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................ACTAATAT---------------------------------------------------ATTT-----A-------------------------TATATA................................................................................................................................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..............................................................TAATAT---------------------------------------------------ATTT-----A-------------------------TATATATA..............................................................................................................................................................................................................................................................................................................................................................1980.3830000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................CTAATAT---------------------------------------------------ATTT-----A-------------------------TATATATA..............................................................................................................................................................................................................................................................................................................................................................2030.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................AATAT---------------------------------------------------ATTT-----A-------------------------TATATATA..............................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................CTTACACGGAAC---GAACTTC...................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GGCGCTGGCGTCTTGGCTTCCATTCCTCACGGACTCTACTCCAAGGCACTGTAAGTA-TCACTAATAT---------------------------------------------------ATAT-----A----------------------ACATCTATATAGATATAGTA---------------TCGAATATACAT-----------------------------------ATGTT--------TA----------TTTGTGCCGGTTCC--------TCTG------GC----------------GCCGTC-----GCCATTGATGAA-----CGAACTGCTTACACGGAAC-------ACGGGACTTGTTGGT-------GG------------------------G-CA-GG-GGG-----------------AGCGATATCGCCGTGATCTCGTGCGCGAAATA-----------CGAAAATAGCTCAAAGCTGCC--T-------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................ATTCCTCACGGACTCTACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00202000000000000000
...................CCATTCCTCACGGACTCTACTCCAAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010000000000000
.....................ATTCCTCACGGACTCTACTCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
.................TTCCATTCCTCACGGACT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
.............................CGGACTCTACTCCAAGGCACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
.........GTCTTGGCTTCCATTCCTCAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000100000000000
..................TCCATTCCTCACGGACTCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
.........................CTCACGGACTCTACTCCAAGGCACC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00110000000000000000
.........................................CAAGGCACTGTAAGTA-TCACT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
...................CCATTCCTCACGGACTCTACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
................CTTCCATTCCTCACGGACTCTACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000000000
droSec2
GGCGCTGGCGTCTTGGCTTCCATTCCTCACGGACTCTACTCCAAGGCACTGTAAGTA-TCACTAATAT---------------------------------------------------ATAT-----A----------------------ACATATATATAGCTAT-----------AGTAT--------------------------------------------------ATGTT--------TA----------CTTGTGCCGGTTCC--------TCTG------GC----------------GCCGTC-----GCCATTGATGAA-----CGAACTGCTTACACGGAAC-------ACGGGACTTGTTGGT-------GG------------------------G-CA-GG-GGGC------ATG---GCGGAGCGATATCGCCGCGATCTCGTGCGCGAAATA-----------CGAAAATAGCTCAAAGCTGCC--T-------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATATCGCCGCGATCTCGTG...................................................2111.0011000
droYak3
GGCGCTGGCGTCTTGGCTTCCATTCCTCACGGACTCTACTTCAAGGCTCTGTAAGTT-CCCCAAATGT---------------------------------------------------ATAT-----T--------------G------TACATATGTATGTACAT---------TAAA----------------------AG-----------ATATAGTATAG------TGTGTT--------TA----------TTTATGCCGGTTCC--------TCTG------GC----------------GCCGTC-----GCCATTGATGAG-----CGAACTGCTTACACGGGACATGGGGCACGGGACTAGTTGGT-------GG------------------------G-CC-GG-GGGT------GTG---GCGAAACGATATTGCCGCGATCTCGTGCGCGAAATA-----------CGAAAATAACTCAAAGCTGCC----------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...GCTGGCGTCTTGGCTTCCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
.................TTCCATTCCTCACGGACT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000
.............................CGGACTCTACTTCAAGGCTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000
.................................................................................................................................................................................................................................................................................................................................CATTGATGAG-----CGAACTGCTT......................................................................................................................................................................2011.00100000010000
GGCGCTGGCGTCTTGGCTTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
.......................TCCTCACGGACTCTACTTCAAGGCTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
droEre2
GGCGCTGGCGTCTTGGCTTCCATTCCTCACGGACTCTACTTCAAGGCTCTGTAAGTT-CC-CTCATAT---------------------------------------------------ATAC------------------------------ATAT----AG-------------AAAGTA-------------CATAACAAGTTGGGCATCGCATATCGTATAG------TGTGTT--------TA----------TTTATGCCGGTTCC--------TCTG------GC----------------GCCGTC-----GCCATTGATGAA-----CGAACTGCTTACACGGGACATGGGGCACGGGACTTGTTGGT-------GG------------------------G-TC-GG-GGGT------GTG---GCGCAACAATATCGCCGCGATCTCGTGCGCGAAATC-----------CGAAAATAGCTCAAAGCTG------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAATATCGCCGCGATCTCGT....................................................2411.0010000100
.........GTCTTGGCTTCCATTCCTCACGGACTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000
...GCTGGCGTCTTGGCTTCCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010

Generated: 05/18/2015 at 06:21 AM