dps_3199

-----------#######################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TCGAGATTTTGATGCCAATCGATAAGGTTAATCCCCACTGTCCTGGGAAGGTAGGTCCTTCGCCGAATTGGCCCTATTTGCCTGAGATATAGCCTTCCGAAGATGTGGATTTCCGCATCATGCAAATACTGGTTTTTTCTGCAAGCTATATCTCAGCTATACGGCAGGCGATCGGGGCGTGGCATGTCATTCCGTGACCGGGAGAGTCCTGCCAACCGATTGGCACCAGAAAAAAGGATATCCATTCCATC ********************************************************************************(((((((((((........(((((((....))))))).((((...............)))).))))))))))).........((.((.......)).))..******************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M040 female body	SRR902012 CNS imaginal disc	GSM343916 embryo	SRR902010 ovaries
..................................................................................TGAGATATAGCCTTCCGAAGATG..................................................................................................................................................	23	0	20	0.40	8	8	0	0	0
...........................................................TCGCCGAAATGCCCCTATTGG...........................................................................................................................................................................	21	3	4	0.25	1	1	0	0	0
.................................................................................................................................................................CGGCAGGCGATCGGGGCGTGGC....................................................................	22	0	5	0.20	1	0	1	0	0
.........................................................................................................................GCACATCCAGGTTTTTTCTGC.............................................................................................................	21	3	15	0.07	1	0	0	1	0
....................................................................................................................................................TATCTCTGCTATACGGCAGGCGA................................................................................	23	1	20	0.05	1	1	0	0	0
...............................................................................................................................ATTGGTTTTTGCTGCAAGC.........................................................................................................	19	2	20	0.05	1	0	0	1	0
...................................................................................GAGATATAGCCTTCCGAAGATG..................................................................................................................................................	22	0	20	0.05	1	1	0	0	0
.............................................................................................................................................................................................................GTCCTGCCAACCGATTGGCA..........................	20	0	20	0.05	1	1	0	0	0
.................................................................................................................................................................................................................TGCCAACCGATTGGCACCAGAAA...................	23	0	20	0.05	1	1	0	0	0
..............................................................................................................................................................................................................TCCTGCCAACCGATTGGCAC.........................	20	0	20	0.05	1	1	0	0	0
............................................................................................................................................................................................................GGTCCTGCCAACCGATTGGCACCAGA.....................	26	1	20	0.05	1	1	0	0	0
.............................................................................................................................................................................................................GTCCTGCCAACCGATTGGCACCAGAT....................	26	1	20	0.05	1	1	0	0	0
.......................................................................................TATAGCCTTCCGAAGATGTCGACT............................................................................................................................................	24	2	20	0.05	1	1	0	0	0
..................................................................................TGAGATATAGCCCTCCGAGGCTGT.................................................................................................................................................	24	3	20	0.05	1	0	0	1	0
.................................................................................CTGAGATATAGCCTTCCGAAGAT...................................................................................................................................................	23	0	20	0.05	1	0	0	0	1
..............................................................................................................................................................................................................TCCTGCCAACCGATTGGCACCA.......................	22	0	20	0.05	1	1	0	0	0

AGCTCTAAAACTACGGTTAGCTATTCCAATTAGGGGTGACAGGACCCTTCCATCCAGGAAGCGGCTTAACCGGGATAAACGGACTCTATATCGGAAGGCTTCTACACCTAAAGGCGTAGTACGTTTATGACCAAAAAAGACGTTCGATATAGAGTCGATATGCCGTCCGCTAGCCCCGCACCGTACAGTAAGGCACTGGCCCTCTCAGGACGGTTGGCTAACCGTGGTCTTTTTTCCTATAGGTAAGGTAG ******************************************************************(((((((((((........(((((((....))))))).((((...............)))).))))))))))).........((.((.......)).))..********************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M040 female body	M059 embryo	V112 male body	GSM343916 embryo
.......................................................................GGGATAAACGGACTCTATATC...............................................................................................................................................................	21	0	20	0.55	11	11	0	0	0
...........................................................AGCGGCTTTACGGGGATAACC...........................................................................................................................................................................	21	3	4	0.50	2	2	0	0	0
..................................................................................................................................................................................CACCGTACAGTAAGGCACTGGCCCTCT..............................................	27	0	4	0.25	1	1	0	0	0
...........................................................AGCGGCTTTACGGGGATAAC............................................................................................................................................................................	20	3	7	0.14	1	0	0	1	0
.....................................................................................................................AGTACGTTTATGACCAAAAAAGAC..............................................................................................................	24	0	7	0.14	1	1	0	0	0
...........................................................AGCGGCTTTACGGGGGTAAAC...........................................................................................................................................................................	21	3	7	0.14	1	1	0	0	0
.....................................................................CCGGGATAAACGGACTCTATATC...............................................................................................................................................................	23	0	20	0.10	2	0	2	0	0
..........................................................AAGCGGCTTTACGGGGGTAA.............................................................................................................................................................................	20	3	18	0.06	1	1	0	0	0
...........................................................AGCGGCTTTACAGGGGTAA.............................................................................................................................................................................	19	3	20	0.05	1	1	0	0	0
......................................................................................................................................................................................................................TGGCTAACCGTGGTCTTTTTTCCTAT...........	26	0	20	0.05	1	1	0	0	0
......................................................................CGGGATAAACGGACTCTATATC...............................................................................................................................................................	22	0	20	0.05	1	0	1	0	0
........................................................................................TGTCGGAAGGGATCTACACC...............................................................................................................................................	20	3	20	0.05	1	0	0	0	1

Species	Coordinate	ID	Alignment
dp5	XR_group6:13164487-13164737 +	dps_3199	TCGAGATTTTGAT-----------GCCAA-TCGATAAGGTTAA--TCCCCACTGTCC-TGGGAAGGTAGGTCCTTCGCCGAATTG-GCCCT-AT-TTGCCTGAGATAT----------------------------------------AGCCTTCCGAA----------------------------GATGTGGATTTCCGC--ATCATGCAAA---TACTGGTTTTTTCTGC-AAGCTATATCTCAGCTATACGGCAGGCGATCGGGGCGTGGCATGTCATTCCGTGACCGGGAGAGTCCTGCCA------------------------------------------ACCGATTGG---------CACC-------------AGAAAA----AAGGATATCCATTCCATC
droPer2	scaffold_88:202597-202847 +		TCGAGATTTTGAT-----------GCCAA-TCGACAGGGTTAA--TCCCCACTGTCC-TGGGAAGGTAGGTCCTTCGCCGAACTA-GCCCT-AT-TTGCCTGAGATAT----------------------------------------AGCCTTCCGAA----------------------------GATGTGGATTTCCGC--ATCATGCAAA---TACTGGTTTTTTCTTT-AAGCTATATCTCAGCTATCCGGAAGGCGATCGGGGCGTGGCATGTCATTCCGTGACCGGAAGAGTCCTGCCA------------------------------------------ACCGATTGG---------CACC-------------AGAAAA----AAGGATATCCATTCCATC
droVir3	scaffold_12875:16314946-16315229 +		TTTTGA------T-----------GCCAA-TCGATAGAACTGA--TCCTTACGAGTC-AAAAATGGTATGAAATTTCA-AAATCGGACGTT-AT-TTGCCCGAGATAT----------------------------------------GCCA---AAAAATCATAAAAAATGGTTGATTTTGAAAACGAGTTGGTTTTCCGTCAATCCCATCGA---TATTGAATTTCTTTGA-ATGAGAATTATTAGTAGGGATCCGTACGAATTTAGAAAGGTATAACATTTCAAAATCAAACGATATTTACCGGAGATATACAATAAAAATCATCGAAAAAGTTTTGATTTTTG--------------------------------------------------------ACCCGACC
droAna3	scaffold_13117:1877905-1878183 -		GCCCGATTTTCACAATCCTGGGATGCAGT-TCGAGGGATATCGGAGC---CCTGATCGCAAAATGAC-ATCCCTTTTCCAAATCC-GTCCAGAA-ATAGCCAAGATATGCGCTCCGAA-----AGTTCAGCCTTGGCGGCCGAAACGCCGGCCGC-------------------------------------------------CG------------CTTGGGCATCTTGCCAAGCTCATATCTTGGCCATTTCCCAACCGATCTTGAAAAAGGAAGCCATTTTGGAATCAGGATCTCAATGTCC------------------------------------------TTCGATCTGCATCTAAAGTTTT-------------TCAAAA----TCGGACAATAAAATTTTC
droBip1	scf7180000396544:429067-429356 -		TCTAGATTTTGAT-----------ACAGAATTTAAGATATTTT--TACCAGGAGTAT-TTTGATGT--GTTCCTTAAAGAAATCA-GACGT-ATACTTTTTAAAATAT----------------------------------------GTGTTTTAGTAGACACAAAAATTTCATGTTTTTTATTAC--GTTGGTACTTTTTTATTTTCGAAAAATTTTTC---GAACTTTGGAAGATCATATCTCAGTTATTTGGTGGTCGATCCAAGAATGTTATATCATTTCGATCTCAGAA------------------------------------AAAGTTGTACTTTTCAATACGACTTT---------CTCT-------------AGTAAATTATAAAAATTTAAAATTTTTT
droKik1	scf7180000302351:865569-865805 -		TTTAGTTAAGTAT-----------GCAGA-CTTATTAACCTTA--AAAAAA--------------------------------------------CTAACTCAGAACTGCTTTCCGAATTGAATTTAATGCATTTTTGGCTGAGTTATAGATTTTTTAA----------------------------GATTTGATTTTCCCC--AA-----AAA---TATC----------GT-AATCTAAAACTCAGTGA---AGGAGTCATTTCCGACCCTATAAACCATATATATTCTTGATCAGCATCGACA------------------------------------------GCCGAGTAA---------TATAAGCCATGTTTTGAAGAAAA----AAAA---------ATTTC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

dp5

TCGAGATTTTGAT-----------GCCAA-TCGATAAGGTTAA--TCCCCACTGTCC-TGGGAAGGTAGGTCCTTCGCCGAATTG-GCCCT-AT-TTGCCTGAGATAT----------------------------------------AGCCTTCCGAA----------------------------GATGTGGATTTCCGC--ATCATGCAAA---TACTGGTTTTTTCTGC-AAGCTATATCTCAGCTATACGGCAGGCGATCGGGGCGTGGCATGTCATTCCGTGACCGGGAGAGTCCTGCCA------------------------------------------ACCGATTGG---------CACC-------------AGAAAA----AAGGATATCCATTCCATC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
....................................................................................................TGAGATAT----------------------------------------AGCCTTCCGAA----------------------------GATG............................................................................................................................................................................................................................	23	20	0.40	8	0	8	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................CGGCAGGCGATCGGGGCGTGGC........................................................................................................................................	22	5	0.20	1	0	0	0	0	0	0	0	0	0	1
.....................................................................................................GAGATAT----------------------------------------AGCCTTCCGAA----------------------------GATG............................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................GTCCTGCCA------------------------------------------ACCGATTGG---------CA...........................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................TGCCA------------------------------------------ACCGATTGG---------CACC-------------AGAAA.......................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................TCCTGCCA------------------------------------------ACCGATTGG---------CAC..........................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................GTCCTGCCA------------------------------------------ACCGATTGG---------CACC-------------AGAT........................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................CTGAGATAT----------------------------------------AGCCTTCCGAA----------------------------GAT.............................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	1	0	0
..........................................................................................................................................................................................................................................................................................................TCCTGCCA------------------------------------------ACCGATTGG---------CACC-------------A...........................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0

droPer2

TCGAGATTTTGAT-----------GCCAA-TCGACAGGGTTAA--TCCCCACTGTCC-TGGGAAGGTAGGTCCTTCGCCGAACTA-GCCCT-AT-TTGCCTGAGATAT----------------------------------------AGCCTTCCGAA----------------------------GATGTGGATTTCCGC--ATCATGCAAA---TACTGGTTTTTTCTTT-AAGCTATATCTCAGCTATCCGGAAGGCGATCGGGGCGTGGCATGTCATTCCGTGACCGGAAGAGTCCTGCCA------------------------------------------ACCGATTGG---------CACC-------------AGAAAA----AAGGATATCCATTCCATC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
....................................................................................................TGAGATAT----------------------------------------AGCCTTCCGAA----------------------------GAT.............................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0
....................................................................................................TGAGATAT----------------------------------------AGCCTTCCGAA----------------------------GA..............................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0

droVir3

TTTTGA------T-----------GCCAA-TCGATAGAACTGA--TCCTTACGAGTC-AAAAATGGTATGAAATTTCA-AAATCGGACGTT-AT-TTGCCCGAGATAT----------------------------------------GCCA---AAAAATCATAAAAAATGGTTGATTTTGAAAACGAGTTGGTTTTCCGTCAATCCCATCGA---TATTGAATTTCTTTGA-ATGAGAATTATTAGTAGGGATCCGTACGAATTTAGAAAGGTATAACATTTCAAAATCAAACGATATTTACCGGAGATATACAATAAAAATCATCGAAAAAGTTTTGATTTTTG--------------------------------------------------------ACCCGACC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...................................................................ATGAAATTTCA-AAATCGGACG..................................................................................................................................................................................................................................................................................................................................	21	5	0.60	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................AAAACGAGTTGGTTTTCCGTC................................................................................................................................................................................................................	21	10	0.20	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................ATCGGACGTT-AT-TTGCCCGAGA..................................................................................................................................................................................................................................................................................................................	22	6	0.17	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................ATAGAACTGA--TCCTTACGAGTC-.................................................................................................................................................................................................................................................................................................................................................................	22	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................ATAGAACTGA--TCCTTACGAGT...................................................................................................................................................................................................................................................................................................................................................................	21	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................TTTTGAAAACGAGTTGGTTTT.....................................................................................................................................................................................................................	21	20	0.15	3	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................TAGAACTGA--TCCTTACGAGTC-AAA..............................................................................................................................................................................................................................................................................................................................................................	24	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................TCCTTACGAGTC-AAAAATGGTATGAAA..................................................................................................................................................................................................................................................................................................................................................	27	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................AAATGGTATGAAATTTCA-AAATCGG.....................................................................................................................................................................................................................................................................................................................................	25	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................TTTTCCGTCAATCCCATCGA---T.................................................................................................................................................................................................	21	9	0.11	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................TCCGTCAATCCCATCGA---TATTG.............................................................................................................................................................................................	22	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................GTTTTCCGTCAATCCCATCGA---..................................................................................................................................................................................................	21	9	0.11	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................ATAGAACTGA--TCCTTACGAGTC-AAAAAT...........................................................................................................................................................................................................................................................................................................................................................	28	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................A--TCCTTACGAGTC-AAAAATGGTATGA....................................................................................................................................................................................................................................................................................................................................................	26	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................AAGTTTTGATTTTTG--------------------------------------------------------ACCCGA..	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................ATAGAACTGA--TCCTTACGAGTC-AAA..............................................................................................................................................................................................................................................................................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................A--TCCTTACGAGTC-AAAAATGGT........................................................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................ATCAAACGATATTTACCGGAG......................................................................................................	21	11	0.09	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................TTGAATTTCTTTGA-ATGAGAATT........................................................................................................................................................................	23	13	0.08	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................GCCAA-TCGATAGAACTGA--TCCTTACG......................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................TGATTTTGAAAACGAGTTGGTTTT.....................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............T-----------GCCAA-TCGATAGAACTGA--TCCTTAC.......................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....GA------T-----------GCCAA-TCGATAGAACTGA--..............................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.................................................TACGAGTC-AAAAATGGTATG.....................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................AGTAGGGATCCGTACGAA...................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................ATTTTGAAAACGAGTTGGTTT......................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................ATAGAACTGA--TCCTTACGAGTC-AAAA.............................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................GATAGAACTGA--TCCTTACGAGTC-AAA..............................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................TCCTTACGAGTC-AAAAATGGTATGAAAT.................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................GATTTTGAAAACGAGTTGGTTT......................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................A--TCCTTACGAGTC-AAAAATGGTATG.....................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................ACTGA--TCCTTACGAGTC-AAAAATGGTAT......................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................TTGATTTTGAAAACGAGTTGG.........................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................CAA-TCGATAGAACTGA--TCCTTA........................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................A--TCCTTACGAGTC-AAAAATGGTATGAAA..................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..TTGA------T-----------GCCAA-TCGATAGAACT..................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droAna3

GCCCGATTTTCACAATCCTGGGATGCAGT-TCGAGGGATATCGGAGC---CCTGATCGCAAAATGAC-ATCCCTTTTCCAAATCC-GTCCAGAA-ATAGCCAAGATATGCGCTCCGAA-----AGTTCAGCCTTGGCGGCCGAAACGCCGGCCGC-------------------------------------------------CG------------CTTGGGCATCTTGCCAAGCTCATATCTTGGCCATTTCCCAACCGATCTTGAAAAAGGAAGCCATTTTGGAATCAGGATCTCAATGTCC------------------------------------------TTCGATCTGCATCTAAAGTTTT-------------TCAAAA----TCGGACAATAAAATTTTC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...........................................................................................................TGCGCTCCGAA-----AGTTCAGCCTTGG...................................................................................................................................................................................................................................................................................	24	6	0.17	1	1	0	0	0	0	0
.........................................................................................CAGAA-ATAGCCAAGATATGCGCTCCGA......................................................................................................................................................................................................................................................................................................	27	7	0.14	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................TGTCC------------------------------------------TTCGATCTGCATCTAAAGT............................................	24	9	0.11	1	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................TGGCCATTTCCCAACCGATCTTGAA.............................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................TCATATCTTGGCCATTTCCCAACC......................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................TCATATCTTGGCCATTTCCCAACCGATC..................................................................................................................................................	28	20	0.05	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................CAAGCTCATATCTTGGCCATTTCCC..........................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0

droBip1

TCTAGATTTTGAT-----------ACAGAATTTAAGATATTTT--TACCAGGAGTAT-TTTGATGT--GTTCCTTAAAGAAATCA-GACGT-ATACTTTTTAAAATAT----------------------------------------GTGTTTTAGTAGACACAAAAATTTCATGTTTTTTATTAC--GTTGGTACTTTTTTATTTTCGAAAAATTTTTC---GAACTTTGGAAGATCATATCTCAGTTATTTGGTGGTCGATCCAAGAATGTTATATCATTTCGATCTCAGAA------------------------------------AAAGTTGTACTTTTCAATACGACTTT---------CTCT-------------AGTAAATTATAAAAATTTAAAATTTTTT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TTTAGTTAAGTAT-----------GCAGA-CTTATTAACCTTA--AAAAAA--------------------------------------------CTAACTCAGAACTGCTTTCCGAATTGAATTTAATGCATTTTTGGCTGAGTTATAGATTTTTTAA----------------------------GATTTGATTTTCCCC--AA-----AAA---TATC----------GT-AATCTAAAACTCAGTGA---AGGAGTCATTTCCGACCCTATAAACCATATATATTCTTGATCAGCATCGACA------------------------------------------GCCGAGTAA---------TATAAGCCATGTTTTGAAGAAAA----AAAA---------ATTTC	Size	Hit Count	Total Norm	Total
No Reads

dps_3199

XR_group6:13164537-13164687 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads