ID:

dps_3187

 Coordinate:

XR_group6:12691816-12692057 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [dpse_GLEANR_12039:1]; CDS [Dpse\GA11947-cds]; CDS [Dpse\GA11947-cds]; exon [dpse_GLEANR_12039:2]; intron [Dpse\GA11947-in]; Antisense to intron [Dpse\GA16901-in]

No Repeatable elements found

Sense Strand Reads

--------##########################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################

CAATTGAAATGGCAGCCATGGCAGCAGCAACAGTCAATAACCACAAAGGGGTAAGTCTGACGCGTCTGCTTTAACTTGGCCTTTAAGCCGCTCCGAGGGTTGGTTTACGGGACATTGCTTATGACACACGCGGTCGCCAGACAAATACGCGGCCAGTGTGGCACATGCATTAGTGTGTGTGTATGTATTTGCAAACATGCATATTTTATTGCATTGCTCAGGGAGATGTTTTTAATTAACGGGTGCGTAAATCGATCGAAAGGGTGATCCAAACTTCAATTTCTTTCCGCAGCCCAAATCCCGTCGCAACGAGCGCAACATATTGACCTTCTACGAGAAGAT

***********************************..........(((((.(((((.(((.((....)).)))))))).)))))(((((((((...))).))))))((((((((((.((..((((((((..((((((...........)))))).)))))(((.(((((..(((((((((((.(((....))).)))))))))))....))))))))))).)).))))............(((((((..........((((((((((........)))..))))))))))).)))...))))))...*********************************** 		Read size # Mismatch Hit Count Total Norm Total M040

female body

 V112

male body		 M022

male body
.............................................................................................CGAGAGTTGGTTTAAGGG....................................................................................................................................................................................................................................... 18 2 3 22.33 67 60 6 1
............................................................................................CGGAGAGTTGGTTTAAGGG....................................................................................................................................................................................................................................... 19 3 10 20.00 200 173 27 0
...........................................................................................TCCGAGAGTTGGTTTAAGGG....................................................................................................................................................................................................................................... 20 2 1 18.00 18 13 5 0
...........................................................................................TCCGAGAGTTGGTTTAAGGGG...................................................................................................................................................................................................................................... 21 3 1 10.00 10 7 3 0
..........................................................................................CTCTGAGAGTTGGTTTAAGGG....................................................................................................................................................................................................................................... 21 3 2 9.50 19 13 6 0
..........................................................................................CTCCGAGAGTTGGTTTAAGG........................................................................................................................................................................................................................................ 20 2 1 7.00 7 3 3 1
...........................................................................................TCCGAGAGTTGGTTTAAGG........................................................................................................................................................................................................................................ 19 2 2 6.50 13 9 4 0
..........................................................................................CTCGGAGAGTTGGTTTAAGG........................................................................................................................................................................................................................................ 20 3 2 6.00 12 7 5 0
..........................................................................................CTCGGAGAGTTGGTTTAAGGG....................................................................................................................................................................................................................................... 21 3 1 6.00 6 3 3 0
..........................................................................................CTCAGAGAGTTGGTTTAAGGG....................................................................................................................................................................................................................................... 21 3 2 6.00 12 9 3 0
..........................................................................................CTCCGAGAGTTGGTTTAAGGG....................................................................................................................................................................................................................................... 21 2 1 4.00 4 3 1 0
............................................................................................TCGAGAGTTGGTTTAAGGG....................................................................................................................................................................................................................................... 19 3 13 3.69 48 36 12 0
...........................................................................................TCAGAGAGTTGGTTTAAGGG....................................................................................................................................................................................................................................... 20 3 6 3.33 20 12 8 0
............................................................................................CCGAGAGTTGGTTTAAGGG....................................................................................................................................................................................................................................... 19 2 1 3.00 3 2 1 0
...........................................................................................TCGGAGAGTTGGTTTAAGGG....................................................................................................................................................................................................................................... 20 3 4 3.00 12 10 2 0
.........................................................................................TCTCCGAGAGTTGGTTTAAGG........................................................................................................................................................................................................................................ 21 3 3 2.00 6 4 0 2
..........................................................................................CTCAGAGAGTTGGTTTAAGG........................................................................................................................................................................................................................................ 20 3 4 1.75 7 7 0 0
............................................................................................CCGAGAGTTGGTTTAAGGGG...................................................................................................................................................................................................................................... 20 3 2 1.50 3 2 1 0
..............................................................................................GAGAGTTGGTTTAAGGGA...................................................................................................................................................................................................................................... 18 2 8 1.13 9 9 0 0
.........................................................................................TCTCCGAGAGTTGGTTTAAGGG....................................................................................................................................................................................................................................... 22 3 1 1.00 1 1 0 0
..........................................................................................CTTCGAGAGTTGGTTTAAGGG....................................................................................................................................................................................................................................... 21 3 1 1.00 1 0 1 0
...................................................................................................................................................................................................................................................................................................GCCCAAATCCCGTCGCAACGAGC............................ 23 0 1 1.00 1 1 0 0
.AATTGAAATGGCAGCCATGGCAGCA............................................................................................................................................................................................................................................................................................................................ 25 0 1 1.00 1 1 0 0
..........................................................................................CTCCCAGAGTTGGTTTAAGGG....................................................................................................................................................................................................................................... 21 3 1 1.00 1 0 1 0
........................................................................................CTCTCCGAGAGTTGGTTTAAGGG....................................................................................................................................................................................................................................... 23 3 1 1.00 1 1 0 0
...............................................................................................................................................................................................................................................................................................................................ATATTGACCTTCTACGAGAAGAT 23 0 1 1.00 1 1 0 0
...........................................................................................CCCGAGAGTTGGTTTAAGGG....................................................................................................................................................................................................................................... 20 3 2 1.00 2 2 0 0
........................................................................................................................................................................................................................................................................................................AATCCCGTCGCAACGAGCGCAACATA.................... 26 0 1 1.00 1 0 1 0
....................................................................................................................................................................................................................................................................................................................ACGAGCGCAACATATTGAC............... 19 0 1 1.00 1 1 0 0
...........................................................................................TCCCAGAGTTGGTTTAAGGG....................................................................................................................................................................................................................................... 20 3 6 0.67 4 4 0 0
............................................................................................CCGAGAGTTGGTTTAAGG........................................................................................................................................................................................................................................ 18 2 3 0.67 2 2 0 0
............................................................................................CGGAGGGTTGGTTTAAGG........................................................................................................................................................................................................................................ 18 2 2 0.50 1 1 0 0
...........................................................................................TCCGAGAGTTGGTTTAAGGGT...................................................................................................................................................................................................................................... 21 3 2 0.50 1 0 1 0
................................................................................................................................................................................................................................................................................................................CGCAACGAGCGCAACCCTT................... 19 3 20 0.45 9 9 0 0
...........................................................................................TTCGAGAGTTGGTTTAAGGG....................................................................................................................................................................................................................................... 20 3 3 0.33 1 1 0 0
.......................................................................................ACTCTCCGAGAGTTGGTTTA........................................................................................................................................................................................................................................... 20 3 4 0.25 1 1 0 0
............................................................................................CCGAGAGTTGGTTTAAGGGT...................................................................................................................................................................................................................................... 20 3 4 0.25 1 1 0 0
..............................................................................................GAGGGTTGGTTTAAGGGG...................................................................................................................................................................................................................................... 18 2 8 0.25 2 2 0 0
.............................................................................................CGAGAGTTGGTTTAAGGGT...................................................................................................................................................................................................................................... 19 3 19 0.21 4 2 1 1
...............................................................................................AGAGTTGGTTTAAGGGTC..................................................................................................................................................................................................................................... 18 3 20 0.20 4 4 0 0
.............................................................................................GGAGGGTTGGTTTAGGGG....................................................................................................................................................................................................................................... 18 2 7 0.14 1 1 0 0
..........................................................................................CTCCCAGAGTTGGTTTAAGG........................................................................................................................................................................................................................................ 20 3 8 0.13 1 1 0 0
..........................................................................................CTCTCAGGGTTGGTTTAAGG........................................................................................................................................................................................................................................ 20 3 8 0.13 1 1 0 0
............................................................................................CCCAGAGTTGGTTTAAGGG....................................................................................................................................................................................................................................... 19 3 19 0.11 2 2 0 0
.............................................................................................CGAGAGTTGGTTTAAGGTA...................................................................................................................................................................................................................................... 19 3 12 0.08 1 1 0 0
...........................................................................................TCCGTGAGTTGGTTTAAGG........................................................................................................................................................................................................................................ 19 3 13 0.08 1 0 1 0
............................................................................................CCTAGAGTTGGTTTAAGGG....................................................................................................................................................................................................................................... 19 3 14 0.07 1 0 1 0
..........................................................................................CTCAGAGAGTTGGTTTAAG......................................................................................................................................................................................................................................... 19 3 17 0.06 1 1 0 0

Anti-sense strand reads

GTTAACTTTACCGTCGGTACCGTCGTCGTTGTCAGTTATTGGTGTTTCCCCATTCAGACTGCGCAGACGAAATTGAACCGGAAATTCGGCGAGGCTCCCAACCAAATGCCCTGTAACGAATACTGTGTGCGCCAGCGGTCTGTTTATGCGCCGGTCACACCGTGTACGTAATCACACACACATACATAAACGTTTGTACGTATAAAATAACGTAACGAGTCCCTCTACAAAAATTAATTGCCCACGCATTTAGCTAGCTTTCCCACTAGGTTTGAAGTTAAAGAAAGGCGTCGGGTTTAGGGCAGCGTTGCTCGCGTTGTATAACTGGAAGATGCTCTTCTA

***********************************..........(((((.(((((.(((.((....)).)))))))).)))))(((((((((...))).))))))((((((((((.((..((((((((..((((((...........)))))).)))))(((.(((((..(((((((((((.(((....))).)))))))))))....))))))))))).)).))))............(((((((..........((((((((((........)))..))))))))))).)))...))))))...*********************************** 		Read size # Mismatch Hit Count Total Norm Total M040

female body

 V112

male body		 M022

male body		 M059

embryo
..........................................................................................GAGGCTCTCAACCAAATTCCC....................................................................................................................................................................................................................................... 21 2 1 8.00 8 8 0 0 0
..........................................................................................GAGCCTCTCAACCAAATTCCC....................................................................................................................................................................................................................................... 21 3 1 7.00 7 7 0 0 0
.........................................................................................AGAGGCTCTCAACCAAATTCC........................................................................................................................................................................................................................................ 21 3 3 7.00 21 14 6 1 0
...........................................................................................AGGCTCTCAACCAAATTCCCC...................................................................................................................................................................................................................................... 21 3 1 4.00 4 4 0 0 0
........................................................................................GAGAGGCTCTCAACCAAATTC......................................................................................................................................................................................................................................... 21 3 3 3.67 11 6 4 1 0
..........................................................................................GAGGGTCTCAACCAAATTCCC....................................................................................................................................................................................................................................... 21 3 1 3.00 3 3 0 0 0
.........................................................................................TGAGGCTCTCAACCAAATTCCC....................................................................................................................................................................................................................................... 22 3 1 2.00 2 2 0 0 0
..........................................................................................GAGACTCTCAACCAAATTCCC....................................................................................................................................................................................................................................... 21 3 2 1.50 3 3 0 0 0
.......................................................................................TGAGAGGCTCTCAACCAAAT........................................................................................................................................................................................................................................... 20 3 4 1.25 5 4 1 0 0
.........................................................................................CGAGCCTCTCAACCAAATTCC........................................................................................................................................................................................................................................ 21 3 1 1.00 1 1 0 0 0
........................................................................................GAGAGGCTCTCAACCAAATT.......................................................................................................................................................................................................................................... 20 3 5 1.00 5 4 0 1 0
..........................................................................................GAGTCTCTCAACCAAATTCCC....................................................................................................................................................................................................................................... 21 3 2 0.50 1 1 0 0 0
............................................................................................GGCTCTCAACCAAATTCCCC...................................................................................................................................................................................................................................... 20 3 2 0.50 1 1 0 0 0
...........................................................................................AGCCTCTCAACCAAATTCCC....................................................................................................................................................................................................................................... 20 3 4 0.50 2 2 0 0 0
..........................................................................................GAGCCTCTCAACCAAATTCC........................................................................................................................................................................................................................................ 20 3 2 0.50 1 1 0 0 0
.........................................................................................AGAGGCTCTCAACCAAATTC......................................................................................................................................................................................................................................... 20 3 9 0.44 4 2 0 2 0
............................................................................................GCCTCTCAACCAAATTCCC....................................................................................................................................................................................................................................... 19 3 10 0.40 4 4 0 0 0
..........................................................................................GAGGGTCTCAACCAAATTCC........................................................................................................................................................................................................................................ 20 3 8 0.38 3 3 0 0 0
................GTACAGTTGTCGTTGTAAGTTA................................................................................................................................................................................................................................................................................................................ 22 3 6 0.17 1 1 0 0 0
...................................................................................................................................................................................................................................................................................................CGGCTTTAGGGCAGCCATGCT.............................. 21 3 7 0.14 1 0 0 0 1
............................................................................................AGCTCTCAACCAAATTCCC....................................................................................................................................................................................................................................... 19 3 13 0.08 1 1 0 0 0
.........................................................................................AGAGGCTCTCAACCAAATT.......................................................................................................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 XR_group6:12691766-12692107 - dps_3187 C------------------------------------------AATTGAAATGGCAGCCATGGCAGCA------GCA---ACAGT------------------CAAT------AACC------ACAAAGGGGTAAGTC---------------------------------------TGACGCGT----CTGCTTTAACTTGGCCTTTAAGC--CG--CTCCGAGGGTTGGTTTACGGGACATT----------GCTT-A----------TG--------ACACACGCGGTCGCCAGACAAATACGCGGCCAG--------------------------------------------------------------------------------------TGTGGCA------------CATGCATTAGTGTGTG-----------------------------TGTATGTATTTGC------------AAACATGCATATTTTATTGCA---------------------------------------------TTGCTCAGGGAGATGTTTTTA-------------------------ATTAACGGGTGCGTAAATCGATCGAA-----AGG-------------GTGATCCA-----AACTTCAA----TTTCTTTCCGCAGCCCAAATCCCGTCGCAACGAGCGCAACATATTGACCTTCTACGAGAAGAT---
droPer2 scaffold_33:713281-713623 - C------------------------------------------AATTGAAATGGCAGCCATGGCAGCA------GCA---ACAGT------------------CAAT------AGCC------ACAAAGGGGTAAGTC---------------------------------------TGACGCGT----CTGCTTTAACTTGGCCTTTAAGC--CG--CTCCGAGGGTTGGTTTACGGGACATT---------TGCTT-A----------TG--------ACACACGCGGTCGCCAGACAAATACGCGGCCAG--------------------------------------------------------------------------------------TGTGGCA------------CATGCATTTGTGTGTG-----------------------------TGTATGTATTTGC------------AAACATGCATATTTTATTGCA---------------------------------------------TTGCTCAGGGAGATGTTTTTA-------------------------ATTAACGGGTGCGTAAATCGATCGAA-----AGG-------------GTGATCCA-----AACTTCAA----TTTCTTTCCGCAGCCCAAATCCCGTCGCAACGAGCGCAACATATTGACCTTCTACGAGAAGAT---
droWil2 scf2_1100000004768:306445-306502 - T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAACAGGCAAAATCACGTCGAAATGAACGTAATATTTTAACATTCTATGAAAAAAT---
droVir3 scaffold_13049:9525875-9526066 - CAT-------ATGGCG-AGCAGTT---------------------------CAGCAGCCATGGACACAGCGACGGCAACAACTACAACAAAAAG---AGGCAAC------------AACAAGAGCAAAGGGGTAAGTGA----GAA--TGT----C----TCG--------------TGC----T----GTA--TTAACTTGGCCTTTAAGC--TGT---GCGAGGGTTGGTTTGTTGTGCGT--T-----TTTGCTT-A----------TGG-CACCATACACGCG-----------------C------------------ATTCGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGACAAACA---
droMoj3 scaffold_6680:11236774-11236997 + CAT-------TTGGCG-AGCAACTTA-------------------------ACACAGCCATGGACACA------GCAGCAGCAACCACGAAAAAGGGAAATAACAACA------ACAGCAAGAGCAAAGGGGTAAGTCA----AAG--TGA----T----TCGTGTTGCTCG-----TGT----T----GTG--TTAACTTGGCCTTTAGCC--AGC---ATGAGGGTTGATTTGTTATGCGT--TT------TGCTT-A----------TGGGCATCATACACACG-----------------C------------------ATTCGTAAGGCAAGCAATTAGTCAC---------------------------------------------------AATGGCG------------TA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15110:13059992-13060255 + CAACTGCTT-TCGGCGCATCAGCTTAGCAGCCATGGACACTGCAGCGGCTGAGGCAGCGACAGCGGCA------GCATCAGCAACCACAAAAAA---AGG---CAAC------AACA------AGAAAGGGGTAAGTTG----AAA--TTT----C----TCA-------C------ACAATTTT----CTG--TTAACTTGGCCTTTAAGC--TGG---ACGGGGGTTGATTTGTTATGCGT--T-----GTTGCCT-A----------TG--------ACGCACAC-------AGACACACACGCACTCGCAC--------ATTCGTAAGACAAACACTT--------------------------------------------------------------------------------------------------------AAGCGCAGTGGCATATCCTGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAT---
droAna3 scaffold_13337:10166501-10166565 - AAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTCTCCCCAGGCCAAATCGCGGCGGAATGAGCGCAATATCCTTACGTTCTACGAAAAGAT---
droBip1 scf7180000396569:1193643-1193799 + C------------------------------------------T---------------ATAGCAGCA------TTGCCAACGGCGACACTGCG---GCGCAATAAAA------ACAACAGCAACAAGGGGGTAAGTAA----GAACTGGA----A----GCC--------------TGTAA--------TG--TTAACTTGGCCCTTAAGC--GATGCGAACGGGGTGGATTTTAC-AAGTTGAGACACTT-----TGGGCCG--------------------------TCGCCAGGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302486:1362823-1363076 + C------------------------------------------AATTGAAATGGCAGCCATAGCAGCA------TTACCAACGGCGACGCTGCG---GCGCAACAAT------AACA------ACAAAGGGGTAAGT---CC-CAAGTGGA----A----GCC--------------AGATA--------TG--TTAACTTGGCCTTTAAGC--GGTCCTAGGAGGGTGGATTTTAT-AGCTTG--------------------------TGG-----------------CCAACAGACAAACACGCGCGTCATCCAAAGACG----------------CACAGGAACAATTACGTAATTGTGTTTGTACATACACTATAC------------------------A----TATACATGCATACA-----------------------------TATGTATATATGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTT---
droFic1 scf7180000453929:481700-482175 - C------------------------------------------TATCTAAATGGCAGCTATTGCGGCA------TTACCAACGGCGACGCTGCG---CCGCAACAAT------AACA------ACAAAGGGGTAAGTTGACC-CAAGGGGA----A----GCC--------------AGATA--------TG--TTAACTTGGCCTTTAAGC--GGCCCGCTGAGGGTGGATTTTAC-AACTTACCT----------CAAGTGAGCA-CGCGG-----------------CCGTCAGACACGT------------TGG-------------------------------------------------------------AAATGTATTGTA---TGTACACACTTCCATACATA----CAAACA------CGTC-------------------------------------CATGTATAGCGTATTAAATATGTATTTACCCTTGAGCCTTGAAGGTCAAGGATTTCTATATACAGTTCTTTGGTATGATCCCTTT-GTCAAAAGGATGTTTTTATACCCTCTCAGACTTTTTGAGATACTATAATAG-ATAGTAAAAT-------AAAATATGAATTTTTAATTGTTTAATTTGTAATCATATTTTACTCTTATTTTATCGTAGATCAAATCTCGTCGCAATGAACGTAACATCTTAACTTTCTACGAGAAGAT---
droEle1 scf7180000491193:2004954-2005215 + C------------------------------------------TATTGAAATGGCAGCTATAGCGGCA------TTACCAACGGCGACGCTGCG---GCGAAACAAT------AACA------ACAAAGGGGTAAGTATTCA-GAAGTGGA----A----GCC--------------AGATATGTTTGTATG--TTAACTTGGCCTTAAAGC--GGTCCGCTGAGGGTGGATTTTAC-AACTGGCCT----------CAAGTGTACA-CGCGG-----------------CCGTCAGACAAGCACGCGCCTAAGCTGGAAGCA---------------------------------------------------------------------------CA----TA------------TGTACATACATATGTATTGTATATACTTATGTACATTTGTAAATACATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTT---
droRho1 scf7180000758273:960-1119 + TAC-------TTA--------------------------------TTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA------------AAACGCATTTACTTTATCGCT---------------------------------------------TTTTTCACG---------------------------------TTAATTTAATAAAATTGTAAAAC-------ATTACATG-------------CTAATTTAGACTGATCTTTTATGCTCTTTTTTCCTTAGGTCAAATCCCGTCGCAATGAGCGTAACATTCTAACTTTTTACGAGAAAAT---
droBia1 scf7180000302193:4695024-4695287 + GAATTTAGTTAAAACT-A------------------------CTACCGAAATGGCAGCTATTGCGGCA------TTGCCAACAGCCCCGTTGCG---GCGCAACAAC------ACCA------GCAAAGGGGTAAGTAGACC-CG-GGGGA----A----GCC--------------AGATAGGT----TGG--TTAACTTGGCCTTTAAGC--GGCCCGCCGAGGGTGGATTTCAC-AACATGCCT----------CGAGTGGACA-CGCGG-----------------CCGTCAGACAAGCACGCGCCTAAACTGC-------------------------------------------------------------A-------------------TGTACTACATACATACGCAGATACT-----------------------------------------TATGTATCTAT------------ATACA-GCAC-TTTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT---
droTak1 scf7180000415809:1105196-1105459 + C------------------------------------------TATTGAAATGGCAGCTATTGCGGCA------TTACCAACAACTACGTTGCG---CCGCAACAAC------AACA------ACAAAGGGGTAAGTTGTCT-CAGGGATGTACAAATGTATG-----TACATATGTATGTAGGT----TTG--TTAACTTGGCCTTTAAGC--GGTCCGCTGAGGGTGGTTTTCAC-AACTTGCCT----------CAAGTGGACA-CGCGG-----------------CCGTCAGACAAGCACGCGTCTAAACTGG-------------------------------------------------------------AAATATAC----ATATTTACAAATGCA------------CATACATATGTATGT-----------------------------ATGTA------------------------------GGCTTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT---
droEug1 scf7180000409711:4675776-4676026 + C------------------------------------------TATTGAAATGGCAGCTATTGCGGCA------TTACCAACAACTACGTTGCG---TCGCAACAACAACAATAACAGCAACAACAAAGGGGTGAGTAGTCCAGAAGGAGA----A----GCC--------------AGATATGT----TTG--TTAACTTGGCCTTTAAGC--GGTCCGCTGAGGGTGGATTTTAC-AACTTGCCT----------CAAGTGGGCAGCGCGA-----------------GCGTCAGACAAGCACGCGC-TAAACTGT-------------------------------------------------------------AA------------------------A------------TATACATTTGTATGTA-----------------CATATGTATGTACGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATATCTA
dm3 chr3L:21339622-21339862 - dme_312 C------------------------------------------TATTGAAATGGCTGCTATTGCCGCC------CTGCCAACAACAACGTTGCG---GCGCAACAACA------ACAACAACACCAAAGGGGTAAGTAGTCG-CAAAGGGA--CAAG-GGACC--------------AGATATGT----CTG--TTAACTTGGCCCTTAAGC--GACCCGCTGAGGGTGGATTTTAT-AACGTGTCT----------CGAGTGGACA-CGCGG-----------------CAGTTACACTAA-AC------------------ACG--------------------------------------------------------------------TGTACACAAGCA------------TATGCATACATATGTA-------------------------------------CATGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATACCGCACACAT---
droSim2 3l:20874203-20874428 - C------------------------------------------TATTGAAATGGCTGCAATTGCCGCC------TTGCCAACAACAACGTTGCG---TCGCAACAACA------ACAGCAACACCAAAGGGGTAAGTTGTCG-CAAGGGGA--CAAGGGGACC--------------AGATATGT----CTG--TTAACTTGGCCTTTAAGTGTGGCCCTCTGAGGGTGGATTTTAT-AACGTGCCT----------CGAGTGGACA-CGCGG-----------------CAGTCACACCAATAC------------------ATG--------------------------------------------------------------------TGTACCTAAGCA------------TATACATACGTATGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_11:1276892-1277120 - CAA-------C--------------------------------TATTGAAATGGCTGCAATTGCCGCC------TTGCCAACAACAACGTTGCG---TCGCAACAACA------ACAGCAACACCAAAGGGGTAAGTTGTCG-CAAGGGGT--AAAGGGGACC--------------AGATATGT----CTG--TTAACTTGGCCTTTAAGTGTGGCCCTCTGAGGGTGGATTTTAT-AACGTGCCT----------CGAGTGGACA-CGCGG-----------------CAGTCACACCAATAC------------------ATG--------------------------------------------------------------------TGTACCAAAGCA------------TATACATACGTATGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 3L:19187734-19187977 + C------------------------------------------TACTGAAATGGCTGCTATTGCCGCC------TTGCCAACAACAACGTTGCG---GCGCAGCAACA------ACAGCAACCACAAAGGGGTAAGTTGTCG-CAAGGAAA----A----GCC--------------AGATATGT----CTG--TTAACTTGGCCTTTAAGC--GACCCTTTGAGGGTGGATTTTAT-AACGTGACT----------CGAGTGGACA-CGCGG-----------------CAGTTGCACCAATAC------------------TTC--------------------------------------------------------------------TGTTTGCACGCA------------TATACATACATATGTA-----------------------------TGTATGTATGTAC------------ATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTTATAT---
droEre2 scaffold_4784:21008313-21008557 - CAA-------ACAACT-A------------------------CTGCTGAAATGGCTGCTATTGCCGCC------TTGCCAACAACAACGTTGCG---GCGCAACAGCA------ACAGCAACACCAAAGGGGTAAGTTGTCG-CAAGGGGA----A----GCC--------------AGATATGT----CTG--CTAACTTGGCCTTTAAG----GCCCTCTGAGGGTGGATTTTAT-AACGTGCCT----------CGAGTGGACA-CGCGG-----------------C-TTCACACCAATGC------------------ATT--------------------------------------------------------------------TGTACACAAGCA------------TATACATATGGATGTA-----------------------------TGTATGTTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTACGCAT---

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
C------------------------------------------AATTGAAATGGCAGCCATGGCAGCA------GCA---ACAGT------------------CAAT------AACC------ACAAAGGGGTAAGTC---------------------------------------TGACGCGT----CTGCTTTAACTTGGCCTTTAAGC--CG--CTCCGAGGGTTGGTTTACGGGACATT----------GCTT-A----------TG--------ACACACGCGGTCGCCAGACAAATACGCGGCCAG--------------------------------------------------------------------------------------TGTGGCA------------CATGCATTAGTGTGTG-----------------------------TGTATGTATTTGC------------AAACATGCATATTTTATTGCA---------------------------------------------TTGCTCAGGGAGATGTTTTTA-------------------------ATTAACGGGTGCGTAAATCGATCGAA-----AGG-------------GTGATCCA-----AACTTCAA----TTTCTTTCCGCAGCCCAAATCCCGTCGCAACGAGCGCAACATATTGACCTTCTACGAGAAGAT---SizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAAATCCCGTCGCAACGAGC...............................2311.0010100000000
...........................................AATTGAAATGGCAGCCATGGCAGCA------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTGACCTTCTACGAGAAGAT---2311.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCCCGTCGCAACGAGCGCAACATA.......................2611.0010000001000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAGCGCAACATATTGAC..................1911.0010100000000
droPer2
C------------------------------------------AATTGAAATGGCAGCCATGGCAGCA------GCA---ACAGT------------------CAAT------AGCC------ACAAAGGGGTAAGTC---------------------------------------TGACGCGT----CTGCTTTAACTTGGCCTTTAAGC--CG--CTCCGAGGGTTGGTTTACGGGACATT---------TGCTT-A----------TG--------ACACACGCGGTCGCCAGACAAATACGCGGCCAG--------------------------------------------------------------------------------------TGTGGCA------------CATGCATTTGTGTGTG-----------------------------TGTATGTATTTGC------------AAACATGCATATTTTATTGCA---------------------------------------------TTGCTCAGGGAGATGTTTTTA-------------------------ATTAACGGGTGCGTAAATCGATCGAA-----AGG-------------GTGATCCA-----AACTTCAA----TTTCTTTCCGCAGCCCAAATCCCGTCGCAACGAGCGCAACATATTGACCTTCTACGAGAAGAT---SizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
No Reads
droWil2
T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAACAGGCAAAATCACGTCGAAATGAACGTAATATTTTAACATTCTATGAAAAAAT---SizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
No Reads
droVir3
CAT-------ATGGCG-AGCAGTT---------------------------CAGCAGCCATGGACACAGCGACGGCAACAACTACAACAAAAAG---AGGCAAC------------AACAAGAGCAAAGGGGTAAGTGA----GAA--TGT----C----TCG--------------TGC----T----GTA--TTAACTTGGCCTTTAAGC--TGT---GCGAGGGTTGGTTTGTTGTGCGT--T-----TTTGCTT-A----------TGG-CACCATACACGCG-----------------C------------------ATTCGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGACAAACA---SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells
........................................................................................AAAAAG---AGGCAAC------------AACAAGAGCAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000010
......................................................................................ACAAAAAG---AGGCAAC------------AACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000010000000000000000000000000000000000000000000
.............GCG-AGCAGTT---------------------------CAGCAGCCATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000010000000000000000000000000000000000000000000000000000000
droMoj3
CAT-------TTGGCG-AGCAACTTA-------------------------ACACAGCCATGGACACA------GCAGCAGCAACCACGAAAAAGGGAAATAACAACA------ACAGCAAGAGCAAAGGGGTAAGTCA----AAG--TGA----T----TCGTGTTGCTCG-----TGT----T----GTG--TTAACTTGGCCTTTAGCC--AGC---ATGAGGGTTGATTTGTTATGCGT--TT------TGCTT-A----------TGGGCATCATACACACG-----------------C------------------ATTCGTAAGGCAAGCAATTAGTCAC---------------------------------------------------AATGGCG------------TA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
........................................................GCCATGGACACA------GCAGCAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
droGri2
CAACTGCTT-TCGGCGCATCAGCTTAGCAGCCATGGACACTGCAGCGGCTGAGGCAGCGACAGCGGCA------GCATCAGCAACCACAAAAAA---AGG---CAAC------AACA------AGAAAGGGGTAAGTTG----AAA--TTT----C----TCA-------C------ACAATTTT----CTG--TTAACTTGGCCTTTAAGC--TGG---ACGGGGGTTGATTTGTTATGCGT--T-----GTTGCCT-A----------TG--------ACGCACAC-------AGACACACACGCACTCGCAC--------ATTCGTAAGACAAACACTT--------------------------------------------------------------------------------------------------------AAGCGCAGTGGCATATCCTGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAT---SizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
No Reads
droAna3
AAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTCTCCCCAGGCCAAATCGCGGCGGAATGAGCGCAATATCCTTACGTTCTACGAAAAGAT---SizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATCGCGGCGGAATGAGCGCAATATC.......................2811.001010000
droBip1
C------------------------------------------T---------------ATAGCAGCA------TTGCCAACGGCGACACTGCG---GCGCAATAAAA------ACAACAGCAACAAGGGGGTAAGTAA----GAACTGGA----A----GCC--------------TGTAA--------TG--TTAACTTGGCCCTTAAGC--GATGCGAACGGGGTGGATTTTAC-AAGTTGAGACACTT-----TGGGCCG--------------------------TCGCCAGGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
C------------------------------------------AATTGAAATGGCAGCCATAGCAGCA------TTACCAACGGCGACGCTGCG---GCGCAACAAT------AACA------ACAAAGGGGTAAGT---CC-CAAGTGGA----A----GCC--------------AGATA--------TG--TTAACTTGGCCTTTAAGC--GGTCCTAGGAGGGTGGATTTTAT-AGCTTG--------------------------TGG-----------------CCAACAGACAAACACGCGCGTCATCCAAAGACG----------------CACAGGAACAATTACGTAATTGTGTTTGTACATACACTATAC------------------------A----TATACATGCATACA-----------------------------TATGTATATATGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTT---SizeHit CountTotal NormTotal
No Reads
droFic1
C------------------------------------------TATCTAAATGGCAGCTATTGCGGCA------TTACCAACGGCGACGCTGCG---CCGCAACAAT------AACA------ACAAAGGGGTAAGTTGACC-CAAGGGGA----A----GCC--------------AGATA--------TG--TTAACTTGGCCTTTAAGC--GGCCCGCTGAGGGTGGATTTTAC-AACTTACCT----------CAAGTGAGCA-CGCGG-----------------CCGTCAGACACGT------------TGG-------------------------------------------------------------AAATGTATTGTA---TGTACACACTTCCATACATA----CAAACA------CGTC-------------------------------------CATGTATAGCGTATTAAATATGTATTTACCCTTGAGCCTTGAAGGTCAAGGATTTCTATATACAGTTCTTTGGTATGATCCCTTT-GTCAAAAGGATGTTTTTATACCCTCTCAGACTTTTTGAGATACTATAATAG-ATAGTAAAAT-------AAAATATGAATTTTTAATTGTTTAATTTGTAATCATATTTTACTCTTATTTTATCGTAGATCAAATCTCGTCGCAATGAACGTAACATCTTAACTTTCTACGAGAAGAT---SizeHit CountTotal NormTotal
No Reads
droEle1
C------------------------------------------TATTGAAATGGCAGCTATAGCGGCA------TTACCAACGGCGACGCTGCG---GCGAAACAAT------AACA------ACAAAGGGGTAAGTATTCA-GAAGTGGA----A----GCC--------------AGATATGTTTGTATG--TTAACTTGGCCTTAAAGC--GGTCCGCTGAGGGTGGATTTTAC-AACTGGCCT----------CAAGTGTACA-CGCGG-----------------CCGTCAGACAAGCACGCGCCTAAGCTGGAAGCA---------------------------------------------------------------------------CA----TA------------TGTACATACATATGTATTGTATATACTTATGTACATTTGTAAATACATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTT---SizeHit CountTotal NormTotal
No Reads
droRho1
TAC-------TTA--------------------------------TTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA------------AAACGCATTTACTTTATCGCT---------------------------------------------TTTTTCACG---------------------------------TTAATTTAATAAAATTGTAAAAC-------ATTACATG-------------CTAATTTAGACTGATCTTTTATGCTCTTTTTTCCTTAGGTCAAATCCCGTCGCAATGAGCGTAACATTCTAACTTTTTACGAGAAAAT---SizeHit CountTotal NormTotal
No Reads
droBia1
GAATTTAGTTAAAACT-A------------------------CTACCGAAATGGCAGCTATTGCGGCA------TTGCCAACAGCCCCGTTGCG---GCGCAACAAC------ACCA------GCAAAGGGGTAAGTAGACC-CG-GGGGA----A----GCC--------------AGATAGGT----TGG--TTAACTTGGCCTTTAAGC--GGCCCGCCGAGGGTGGATTTCAC-AACATGCCT----------CGAGTGGACA-CGCGG-----------------CCGTCAGACAAGCACGCGCCTAAACTGC-------------------------------------------------------------A-------------------TGTACTACATACATACGCAGATACT-----------------------------------------TATGTATCTAT------------ATACA-GCAC-TTTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT---SizeHit CountTotal NormTotal
No Reads
droTak1
C------------------------------------------TATTGAAATGGCAGCTATTGCGGCA------TTACCAACAACTACGTTGCG---CCGCAACAAC------AACA------ACAAAGGGGTAAGTTGTCT-CAGGGATGTACAAATGTATG-----TACATATGTATGTAGGT----TTG--TTAACTTGGCCTTTAAGC--GGTCCGCTGAGGGTGGTTTTCAC-AACTTGCCT----------CAAGTGGACA-CGCGG-----------------CCGTCAGACAAGCACGCGTCTAAACTGG-------------------------------------------------------------AAATATAC----ATATTTACAAATGCA------------CATACATATGTATGT-----------------------------ATGTA------------------------------GGCTTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT---SizeHit CountTotal NormTotal
No Reads
droEug1
C------------------------------------------TATTGAAATGGCAGCTATTGCGGCA------TTACCAACAACTACGTTGCG---TCGCAACAACAACAATAACAGCAACAACAAAGGGGTGAGTAGTCCAGAAGGAGA----A----GCC--------------AGATATGT----TTG--TTAACTTGGCCTTTAAGC--GGTCCGCTGAGGGTGGATTTTAC-AACTTGCCT----------CAAGTGGGCAGCGCGA-----------------GCGTCAGACAAGCACGCGC-TAAACTGT-------------------------------------------------------------AA------------------------A------------TATACATTTGTATGTA-----------------CATATGTATGTACGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATATCTASizeHit CountTotal NormTotal
No Reads
dm3
C------------------------------------------TATTGAAATGGCTGCTATTGCCGCC------CTGCCAACAACAACGTTGCG---GCGCAACAACA------ACAACAACACCAAAGGGGTAAGTAGTCG-CAAAGGGA--CAAG-GGACC--------------AGATATGT----CTG--TTAACTTGGCCCTTAAGC--GACCCGCTGAGGGTGGATTTTAT-AACGTGTCT----------CGAGTGGACA-CGCGG-----------------CAGTTACACTAA-AC------------------ACG--------------------------------------------------------------------TGTACACAAGCA------------TATGCATACATATGTA-------------------------------------CATGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATACCGCACACAT---SizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM231091

Ovary		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
...................................................................................................................................................................................................TAACTTGGCCCTTAAGC--GACCCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23178.00780000000000000000000000000000000000000102002000001100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200001000000000000000000000000000000000000000000010240000000000000000110000000000000000001000000001000000110000100000011000121002000010000002000302210021000052611012170000000010102010
...................................................................................................................................................................................................TAACTTGGCCCTTAAGC--GACC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21131.00310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000001000000010000000000000000000010000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000001000000002000001001000000001002000100100010000000000001100000400001020000100000102000
...................................................................................................................................................................................................TAACTTGGCCCTTAAGC--GACCCGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2415.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000001000010010000000000100000
...................................................................................................................................................................................................TAACTTGGCCCTTAAGC--GACCCGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2414.0040000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
...................................................................................................................................................................................................TAACTTGGCCCTTAAGC--GACCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000
...................................................................................................................................................................................................TAACTTGGCCCTTAAGC--GAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................AGTCG-CAAAGGGA--CAAG-GGACC--------------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000010000000000000000000000
...................................................................................................................................................................................................TAACTTGGCCCTTAAGC--GACCCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................TAACTTGGCCCTTAAGC--GACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.........................................................................................................................................AGTCG-CAAAGGGA--CAAG-GGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000001000000000000
..............................................................................................................................................................................................................................GAGGGTGGATTTTAT-AACGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000
...................................................................................................................................................................................................TAACTTGGCCCTTAAGC--GA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000
..................................................................................................................................GGTAAGTAGTCG-CAAAGGGA--CAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................TAACTTGGCCCTTAAGC--GACCCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
.........................................................................................................................................................................................................................................TTAT-AACGTGTCT----------CGAGTGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
............................................ATTGAAATGGCTGCTATTGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................TCG-CAAAGGGA--CAAG-GGACC--------------AG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................ACGTTGCG---GCGCAACAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................AAGC--GACCCGCTGAGGGTGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................AAGGGA--CAAG-GGACC--------------AG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................CAACAACGTTGCG---GCGCAACAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................GTAGTCG-CAAAGGGA--CAAG-G...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................TGT----CTG--TTAACTTGGCCCTTA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................ACTTGGCCCTTAAGC--GACCCGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
......................................................................................................ACAACA------ACAACAACACCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000100000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................CAACAACA------ACAACAACACCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20160.0610000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................CAACAACA------ACAACAACAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................CAACAACA------ACAACAACACC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
C------------------------------------------TATTGAAATGGCTGCAATTGCCGCC------TTGCCAACAACAACGTTGCG---TCGCAACAACA------ACAGCAACACCAAAGGGGTAAGTTGTCG-CAAGGGGA--CAAGGGGACC--------------AGATATGT----CTG--TTAACTTGGCCTTTAAGTGTGGCCCTCTGAGGGTGGATTTTAT-AACGTGCCT----------CGAGTGGACA-CGCGG-----------------CAGTCACACCAATAC------------------ATG--------------------------------------------------------------------TGTACCTAAGCA------------TATACATACGTATGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
No Reads
droSec2
CAA-------C--------------------------------TATTGAAATGGCTGCAATTGCCGCC------TTGCCAACAACAACGTTGCG---TCGCAACAACA------ACAGCAACACCAAAGGGGTAAGTTGTCG-CAAGGGGT--AAAGGGGACC--------------AGATATGT----CTG--TTAACTTGGCCTTTAAGTGTGGCCCTCTGAGGGTGGATTTTAT-AACGTGCCT----------CGAGTGGACA-CGCGG-----------------CAGTCACACCAATAC------------------ATG--------------------------------------------------------------------TGTACCAAAGCA------------TATACATACGTATGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
No Reads
droYak3
C------------------------------------------TACTGAAATGGCTGCTATTGCCGCC------TTGCCAACAACAACGTTGCG---GCGCAGCAACA------ACAGCAACCACAAAGGGGTAAGTTGTCG-CAAGGAAA----A----GCC--------------AGATATGT----CTG--TTAACTTGGCCTTTAAGC--GACCCTTTGAGGGTGGATTTTAT-AACGTGACT----------CGAGTGGACA-CGCGG-----------------CAGTTGCACCAATAC------------------TTC--------------------------------------------------------------------TGTTTGCACGCA------------TATACATACATATGTA-----------------------------TGTATGTATGTAC------------ATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTTATAT---SizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
No Reads
droEre2
CAA-------ACAACT-A------------------------CTGCTGAAATGGCTGCTATTGCCGCC------TTGCCAACAACAACGTTGCG---GCGCAACAGCA------ACAGCAACACCAAAGGGGTAAGTTGTCG-CAAGGGGA----A----GCC--------------AGATATGT----CTG--CTAACTTGGCCTTTAAG----GCCCTCTGAGGGTGGATTTTAT-AACGTGCCT----------CGAGTGGACA-CGCGG-----------------C-TTCACACCAATGC------------------ATT--------------------------------------------------------------------TGTACACAAGCA------------TATACATATGGATGTA-----------------------------TGTATGTTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTACGCAT---SizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
No Reads

Generated: 06/28/2015 at 03:56 PM