ID:

dps_3183

 Coordinate:

XR_group6:12591775-12591927 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-43.6 -43.5 -43.5

Flybase annnotation

CDS [Dpse\GA14768-cds]; exon [dpse_GLEANR_13446:1]; exon [dpse_GLEANR_13446:2]; CDS [Dpse\GA14768-cds]; intron [Dpse\GA14768-in]

Repeatable elements

NameClassFamilyStrand
(CAG)nSimple_repeatSimple_repeat+
(CCCCAG)nSimple_repeatSimple_repeat+
mature
  1. XL_group1e:10795208-10795233 +
  2. XL_group1e:10795268-10795293 +
  3. XL_group3b:7541-7566 +
  4. Unknown_singleton_958:31458-31483 -
  5. 2:24103891-24103916 +
  6. dps_3183  XR_group6:12591821-12591846 +
  7. Unknown_singleton_1193:1133-1158 -
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GGCTGCTCTTCGGCCAGCTCCACCTCCTCCCACGCCGTCTCCTCATCATCGTCATCAAGCTGCTCGGAGCATTTTGGTCGCTCATCCGCTGTCGTTGCCGCAGCAGCAGCAGCAGCCGCAGCAGCAGCAGCCGCAGTCGCATCTACATCCACGTCGCTTGTCAATGTCAGCGGGAACGCTCATACATCCTCGTCAGCGGTCAGCTCCAGCTCTAGCTCCAGCAACAACTGCAGTCCCAGCTCCATCTCCATCG
**************************************************........((((((..((((.........))))....(((((.(((((.((.......)).))))).))))))))))).(((((...((.....((((..(((.....)))..)))).((((....))))..........))...)))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 GSM343916
embryo
 GSM444067
head
...............................................................TGGGAGCATTTTGGACGCTGAT........................................................................................................................................................................ 22 3 1 1.00 1 0 1 0
...........................................CTTGATCGTCAGCAAGCTGCTC............................................................................................................................................................................................ 22 3 3 0.33 1 0 0 1
................................................................CGGAGCAGTCTGGTAGCTC.......................................................................................................................................................................... 19 3 7 0.29 2 2 0 0
...............................................................................................................................................................................................................................ACAACTGCGGGACCAGCTCCA......... 21 3 4 0.25 1 1 0 0
................................................................CGGAGCAGTCTGGTAGCT........................................................................................................................................................................... 18 3 20 0.20 4 4 0 0
................................................................................................GCCGCAGCAGCAGCAGCAGCCGCAGC................................................................................................................................... 26 0 7 0.14 1 1 0 0
......................................................................................................GCAGCAGCAGCAGCCGCAGCA.................................................................................................................................. 21 0 20 0.10 2 2 0 0
..........................................................................................................CAGCAGCAGCCGCAGCAGCA............................................................................................................................... 20 0 20 0.10 2 2 0 0
..........................................................................................................CAGCAGCAGCCGCAGCAGCAGCAG........................................................................................................................... 24 0 20 0.05 1 1 0 0
..................................................................................................................................................................CATGTCAGTGGGAACACTC........................................................................ 19 3 20 0.05 1 1 0 0
..........................................................................................................CAGCAGCAGCCGCAGCAGCAGCAGC.......................................................................................................................... 25 0 20 0.05 1 1 0 0
.................................................................................................CCGCAGCAGCAGCAGCAGCC........................................................................................................................................ 20 0 20 0.05 1 1 0 0
........................................................................................................AGCAGCAGCAGCCGCAGCAGCAG.............................................................................................................................. 23 0 20 0.05 1 1 0 0
.......................................................................................................CAGCAGCAGCAGCCGCAGCAGCAGCA............................................................................................................................ 26 0 20 0.05 1 1 0 0
........................................................................................................AGCAGCAGCAGCCGCAGCA.................................................................................................................................. 19 0 20 0.05 1 1 0 0
..........................................................................................................CAGCAGCAGCCGCAGCAGCAGCA............................................................................................................................ 23 0 20 0.05 1 1 0 0

Anti-sense strand reads

CCGACGAGAAGCCGGTCGAGGTGGAGGAGGGTGCGGCAGAGGAGTAGTAGCAGTAGTTCGACGAGCCTCGTAAAACCAGCGAGTAGGCGACAGCAACGGCGTCGTCGTCGTCGTCGGCGTCGTCGTCGTCGGCGTCAGCGTAGATGTAGGTGCAGCGAACAGTTACAGTCGCCCTTGCGAGTATGTAGGAGCAGTCGCCAGTCGAGGTCGAGATCGAGGTCGTTGTTGACGTCAGGGTCGAGGTAGAGGTAGC
**************************************************........((((((..((((.........))))....(((((.(((((.((.......)).))))).))))))))))).(((((...((.....((((..(((.....)))..)))).((((....))))..........))...)))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902011
testis
 SRR902010
ovaries
..........................................AGAAGTAAAAGTAGTTCGACG.............................................................................................................................................................................................. 21 3 10 2.20 22 22 0 0
..................................................................................................................................................TAGGTGCAGCGAACAGTTAC....................................................................................... 20 0 1 1.00 1 1 0 0
.............GGTTGAGGTGGACGAGGGTGC........................................................................................................................................................................................................................... 21 2 2 0.50 1 1 0 0
...........................................GAAGTAAAAGTAGTTCGACG.............................................................................................................................................................................................. 20 3 20 0.45 9 9 0 0
...........................................GAAGAAGCAGTAGTTCGAC............................................................................................................................................................................................... 19 2 3 0.33 1 1 0 0
..........................................................................................................................................................................................AGGAGAAGGCGCCAGTCGAGT.............................................. 21 3 6 0.17 1 1 0 0
...........................................................................................................................................................................................GGAGAAGGCGCCAGTCGAGT.............................................. 20 3 14 0.14 2 2 0 0
.................................................................................................................................CGGCGTCAGCGTGCATGTAT........................................................................................................ 20 3 11 0.09 1 1 0 0
..............GTTGAGGTGGAGAAGGGTG............................................................................................................................................................................................................................ 19 2 11 0.09 1 1 0 0
.................................CGGCAGAGCAGGAGCAGCAGTA...................................................................................................................................................................................................... 22 3 15 0.07 1 0 1 0
...................................................................................................................................................................TACAGACGGCCTTGCGAGA....................................................................... 19 3 17 0.06 1 1 0 0
.......................................................................................................GTCGTCGTCGTCGGCGTCGTCGTC.............................................................................................................................. 24 0 20 0.05 1 1 0 0
........................................................................................................TCGTCGTCGTCGGCGTCGT.................................................................................................................................. 19 0 20 0.05 1 1 0 0
.................................CGGCAGAGCAGGAGCAGCAGT....................................................................................................................................................................................................... 21 3 20 0.05 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 XR_group6:12591725-12591977 + dps_3183 GGCTGCTCTTCGGCCAGC--------------------TCC-------A-----------CC-T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTCCCACGCCGTCTCCTCATCATCGTCATCAAGCTGCTCGGAGCATTTTGGTCGCTCATCCGCTGTCGTTGCCGCAGCAGCA------GCAGCAGCCGCAGCAGCAGCAGCCGCAGTC------GCATCTACATCCACGTC----GCTTGTCAAT---------------------------------------GTCAGCGGGA---------AC----------------------GCTCATACATCCTCGTCAGCGGTC------AG---------------------CTCCAG---CTC---TAGCT------------------------------------CCAGCAACAA--------------CTGCAGTCCCA-----------------------GCTCCA---------TCT-----CCATCG
droPer2 scaffold_33:612729-612987 + dpe_1489 GGCTGCTCTTCGGCCAGC--------------------TCC-------A-----------CC-T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTCCCACGCCGTCTCCTCATCATCGTCGTCAAGCTGCTCGGAGCATTTTGGTCGCTCATCCGCTGTCGTTGCCGCAGCAGCAGCAGCAGCAGCAGCCGCAGCAGCAGCAGCCGCAGTC------GCATCTACATCCACGTC----GCTTGTCAAT---------------------------------------GTCAGCGGGA---------AC----------------------GCTCATACATCCTCGTCAGCGGTC------AG---------------------CTCCAG---CTC---TAGCT------------------------------------CCAGCAACAA--------------CTGCAGTCCCA-----------------------GCTCCA---------TCT-----CCATCG
droWil2 scf2_1100000004511:5781600-5781829 - CTCCTCAT--CATCATC------------------CTCATC-------A-----------TC-G--TCATC------------------------------------------------------------------GTCATC-----------------------GTCATCAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATCATCATCAGGTGGTGCCCAT--------------------------------------------G--CCTCTCCAGATAGCGGCTGCTCT---------------TCAGCCTCATCCTCATCTCAGATTGTTTCCTCATCATCGTCATCAACTTGCTCGGAGCATTTCACTAACTCATCAGCGGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTTCCAGCTCCAGTTCCAATTG---------------CAA---CAG---------------------------------------------CAT-TGCA--------ACAGCAGCAGCA-----------------------GTTGCA---------G----------CCG
droVir3 scaffold_12928:5114119-5114372 + GGCGCCACTTTCACCGG-----------------CCGCCAC-------G-----------CC-C-----CC---------------------------------------------------------GCC----------------------------GCGTAACGCCAACAC-----GC---------C-GCAACAGTCGGCGGTAAGCAGCAGCGCCCAAAACGCA--------------------GCCCAAACGCTGGA---G---------CAGCAA---------C-------------------------------------------AGC------AG---CAGCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGCAGCAGCAGCAGCAGCAGCAGACGAGCTC----------CCGCGATTCCCGCTC---CATTTCGCCGGACGTG---------------------------------------ACAC------------------------------------GTTTGTCGG-------------------------------------------CGG---CCGCT------------------------------------GCAGCCGCCG--------------CCGCAGCCGCT---------GCCGCCCATTGCCAGCTGCC----------CG-----TCTTCA
droMoj3 scaffold_6680:3779074-3779327 + AGCAGCAGCACAGCC--------------------AGCATC-------A-----------TC-A-----CAGC-----------GCT-------------------------------------GCAG-----CCGTGGCCGCTGCAGCAGCAGCTGCCG------------------------------------------CGGTGC------------ATCACCAGCAGCAG---G-CGGTA--------CA------------G------CAGCAGCA---GCAG-------------------------CAGGTGC---------------AGCAGCAACAT---CAG------CAACAGCAGCAACAGCAG------------------C-----------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCAGCAGCAGCAA----------------------------------------------------------CAGCAGCAGCA---ACATCATCATCATCATCAGCAGCAAGTTG--CTGCTGTTGCCATGGCAGCGATGGCCAAT------TTGTTGCCACA-----------------------GCAGCA---------GCT-------GTTG
droGri2 scaffold_3013:4070-4302 - GGCAGCGGCAGCGGC--------------------AGCAGC-------A-----------GC-A------------------------------------------------------------GCAG-----CAGCGGCAGCAGCAGCAGCAGCAGCAGC-----------------TCT---------GG--------------TC------------AGCAGCAGCAGCAG---C-T--------------------------GCAGCAGC------AG---------CAGCAGCA-G------------CGGCAGC---------------AGCAG---------------------------------------------------CAGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCGGCAG------------CAGCAGCAGC--------------AGC---------------------------------------AGCGGCAGCAGCAGCAGCGGCAGCAGCAGCAGCAGCAG----------------------------C------AG---------------------CAGCAG---CAG---CAGCG------------------------GCA---------GCAGCAGCAG--------------CGGCAGCGGCA-----------------------GCGGCA---------GCA-----GCAGCA
droAna3 scaffold_12911:2455399-2455666 - AGGAACTGCGGCCAC-----GAC-----------CAGCAGT-------A-----------GT-T-TGCACCCCTACGATCACTATCCCTTTCGGG------------------------AGTC--------------GCAATCAGGACGAGCCACTCCCTT-----------------TCC---------CG--------------CC------------TGTCCCACCA----------------------------CCACGGCCGCAGCAGCAGC-------------------------------------------------------------------AG---C---T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGGCGGCGGCAGCAGCTGCTGCAGTC------ACAGCAGCTTCAGTCAC----CCTGAGCAGC---------------------------------------AGCA---------GCAGCAACACCACTCCCGCCAGCAG----------------------------C------AA---------------------TTCCAC---TAC---CACTA------------------------GTA---------GTGGGAGCAG--------------TGCCCCCATCA-----------------------GTGGCA------CCACCT-----CCA-TG
droBip1 scf7180000396412:17868-18103 + GTTGTCAAGTT----------------------------CC-------A-----------CC-A-C-------------------CAATT-----GA-C-------------------------CC--------------ATCCAATGGTCCAT--------------CA---CCACCAGT---------T------------------------GCACCACCATCATCATCATGCGGCT--------------------------GCGGCGGC------GG---------C----------------------------------------------------AG---CAGCAGCGGC------------T------------GCAGCAGCAGCAGCTGCCGCCCAT--------------------------------------------CATGCCCACCATCTACTGGCTGCCCA---------------TCATCCTCATTCCCAT----------------------------------------------------------------------------------------------------------------------------------------------------------CCATTGGCCGCCACCCACCCGCACCTGCAC-------------------------------------------------------------------------------------------------------------------------GTT------------------------------------CCGGTGGCAG---------------TGCATCCGCA-----------------------CTCCCA---------TCT-----CCAACA
droKik1 scf7180000302677:1059931-1060200 - AGCGGCTCAGCAGCAGG-------------------------------------------------CTGCCCA-----------GCAAC--AGGCGGCGGCCGCC------------------C----ATCAG-----------------------------------CA---GCACCAGC---------A-GCAAGTGG--CGGC------------ACAGCATCAGCAACAGGCGGCAG---TGGCTGCCCA------------T------CAGCAGCAACAACAGCAGC-------TGCAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGCAATTGCTGCAGTTGTCCAT-------CCAACAGGCG----GCTCATCACC---------------------------------------ATCAGCAGGAGCAGCACCGTCAACAGCAGCAGCAGCAG----------------------------C------AA---------------------CACCAG---CAA---CAGCA------------------------------------GCAGCAACAA--------------CAGCAGCAGCA-----------------------GCAACA---------GCA-----CCATCA
droFic1 scf7180000454072:3007538-3007804 + AGCCGCTGCACGGCC--------------------AGCAGC-------A-----------CC-T-T-------------------CACCC----------------------------------GC--------------AGCTGTCGCCGCACCACCTGC-----------------TCT---------CG---------------C---------CGCAGCAGCAGCAACTGGCCGCC--------------------------G------C------------------AGTGGCG-G---------TGGC-CGCGC---------------AGCAG---------------------------CAGCACCAGCAGCAGCAGCAGCAGCAGCAAG--------------------------------------CGAAGCTGATGGACATGAAGCCCATGTTCCTGGGGCCCCTCTCAAGCCGGAGCTCCTGCAGGCGCCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGATGCACAGTCC-----------------------------------------------------------------------------G---------------------GCGCAG---CAG---CA---------------------------------------GCAGCAGCAA--------------CAGCAGCAGCA-----------------------ATCGTC---------GCC-----GCACCT
droEle1 scf7180000491349:650527-650764 - CGG--CCCCATCTCC-C------AGTTCCCCCACTGGCAGC-------A----------------------CC-----------TCATCCACGACGATCGCCGAGGA-----------GGACGT----CGCAC--------------------------------------------------------------------------------------------CAGCAGT-------------------------------GGTG----------------------------------------------------C---------------AGCAGCAGCAT---CAGCAGCATC------------A------------GCAGCAGCAGCAGCCACTTCGCATCCAGCACCGCCACAGCCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCTA---------------------------------TCCGCCCGTGCATACCTCAATGGCACT-------GCAC-------------------------------------------------C------AC---------------------TTCCAG---CAG---CAGCA------------------------------------ACAGCAACAG--------------CCGCAG---GA-----------------TCGCCAGTTGCA---------ACG-----CCACCA
droRho1 scf7180000779476:925-1144 - ACCACCTCCACCGCTAC------------------ATCATC---------------------------------------------------------------------------------------ATCAC--------------------------------------------------------------------------------------------CAGCATCAG---C-AGCAG--------CC------------A------CATCAACA---------CC-------AGCAG---------CATCCGCAGT------TGCAACATCCA------------------CAGCTGCAGCAGCAGCAG------------------CA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCAGCAAC-----------------------------------------------------------------------------------------AACAGCACCTGACAGTCATGGATAATCACCAGCAA-C---ATCAG---------------CCGCATATCCATCAGCAA---CAG---------------------------------------------CAA--------------CAGCAGCAGCAGCAACAATTGCCA------------CCCA---------CGCCGCAGGCATCG
droBia1 scf7180000299102:704764-705008 - AACAGCAG--------TCAACGC-----------CCACCAC-------A-----------CA-T-TCCACGCCCACGCATGCGGTCATGTACGAG------------------------GATCC----TCCGC------------CTGTGCC------------------------------------------AATTGTCGCCGTGC------------AGCAGCAACTCCTC---C-CCGCT--------CC------------G------------------CAGCAGC-------AGC------------------------------------------AACTCCAGCAGCAGCAGCAGCAGCAA------------------------CAGCTGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGACAACACC----GGTGGCCGGC---------------------------------------GCCCTCAGTC---------CC----------------------GCCCAAACACCCACTGG----------------------------------------------ACCC-TCCGC------------------------------------CCAG---CAA--------CAGCAGCAGCAGCAACA-----------------------TC--------------TC-----ACATCG
droTak1 scf7180000413955:43646-43884 - CTCCAATGCCCG-CCTCC-----------TCATCGAGCATCCCTCAGCATTGTTGGTACCCC-TCTCCTCGC--------------------------------------------------------ATCACCAGTTGCAGTTGCAACAGCAG-----------------------------------------------------------------------CAGCAGCAG---C-AGCAA--------CA------------G------CAGC----------------------------------------------------AGCAACAGCAC------------------GTGCAGCAGCAACACCAGCAGCAGCAGCAGCAA---CA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTCCAACAGCAGCAGCAGCAGCAG----------------------------C------AT---------------------CTCCAC---CAG---CAGCA------------------------------------GCAGGATCAA--------------CTGCAGTTCCA-----------------------GCAACAGCACCTCCAGCT-----TTA-TG
droEug1 scf7180000409711:4778213-4778414 - GGCTGTTCGTCGGCCTCC--------------------TCC-------T-----------CC-GGATCATC------------------------------------------------------------------GGGATCCTGTGGATCCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTCCCACGCGGTCTCCTCCTCGTCGTCGTCCAGCTGCTCGGAGCATTTCGCGCGGAGTA---------------------------------------------------------------------------------C----AGTTGTCAAT---------------------------------------GTCAGCGGCC---------AC----------------------GCTCATACATCCTCGTCAGCGGTC---------------------------------AG---CAG---TAGCA------------------------------------ACAACAACAA--------------CAGCAGTACAA-----------------------GCACCA---------GCA-----ACAACA
dm3 chrX:9648937-9649166 + CT--GCTGGGCGGCGGTC--------------------TGC-------A-----------CC-TGGCCACGCC-----------GCACC--AGATGGTCGCCGCGGGCGGTTCGCCGGTGATGC----TTCAC---------------CAGCAG--------------CA---------------------------------------------------------GCAGCAG---C-AGCAA--------CA------------T------CAGCAGCAACAGCAGCAAC-------AGCAG---------CAGCAGC------AGCATCAACAGCAG------------------CAACAGCAGCAACATCAA------------------C-----------------------AGCAGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGC------------A------------------------ACATCAGCAG-C---AGC---------------AGCAGCAACACCACCAGCA------------------------------------------------------A--------------C------AGCA-----------------------GCAGCA---------TCA-----TCACCA
droSim2 x:9192656-9192891 + CT--GCTGGGCGGCGGTC--------------------TGC-------A-----------CC-TGGCCACGCC-----------GCACC--AGATGGTCGCCGCGGGCGGTTCGCCGGTGATGC----TTCAC--------------------------------------------------------------------------------------------CAGCAGCAG---C-AGCAA--------CA------------T------CAGCAGCAACAGCAGCAGC-------AGCAGC------------------------ATCAACAGCAA------------------CAGCAGCAGCAACATCAGCAGCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGCAGCAGCAGCAA----------------------------------------------------------CACCACCAGCA---ACAGCAGCAGCATCATCACCAGCAATTTGGC-----------------------------------CAGCAGCAGCA-----------------------TCCCCA---------TGC-----CCATCA
droSec2 scaffold_15:411100-411335 + CT--GCTGGGCGGCGGTC--------------------TGC-------A-----------CC-TGGCCACGCC-----------GCACC--AGATGGTCGCCGCGGGCGGTTCGCCGGTGATGC----TTCAC--------------------------------------------------------------------------------------------CAGCAGCAG---C-AGCAA--------CA------------T------CAGCAGCAACAGCAGCAGC-------AGCAGC------------------------ATCAACAGCAG------------------CAGCAGCAGCAACATCAGCAGCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGCAGCAGCAGCAA----------------------------------------------------------CACCACCAGCA---ACAGCAGCAGCATCATCACCAGCAATTTGGC-----------------------------------CAGCAGCAGCA-----------------------TCCCCA---------TGC-----CCATCA
droYak3 X:18247210-18247421 + CT--GCTGGGCGGCGGTC--------------------TGC-------A-----------CC-TGGCCACGCC-----------GCACC--AGATGGTCGCCGCGGGCGGTTCGCCGGTGATGC----TCCAC--------------------------------------------------------------------------------------------CAGCAGCAG---C-AGCAT--------CA------------G------CAGCAACA---ACAGCAGC-------AGCAG---------------CAGCAGCAACATCAACAGCAG------------------CAGCAGCAGCAA------------------------CA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGC------------A------------------------TCATCAGCAG-C---AAC---------------AGCAACAACACCACCAGCA------------------------------------------------------A--------------CAGCAG---CA-----------------------GCAGCA---------TCA-----TCATCA
droEre2 scaffold_4690:4536814-4537055 - AGCAGCAGCAACCGC--------------------CG-TTG-------A-----------TCCT------------------------------------------------------------CTCG-----CAGGCTCTGCTGTCGCCATCGCCACCGCTCAACGATC---AGATCAGCTTGCTATTCC-CCAAGTGC--CGAC------------CCA--------------------------------------------------------AGCAGCAGCAGCACT-------CGCAGCAGCAGCAGCACTCGC---------------AGCAG---------------------------CAACTTCAGC--------------------------------CAGCACAACAGCAGCAGCAGCAACATGTCCTCCCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGACGTG------AA---------------------TCCCAG---CTG---CAACA------------------------------------GCAACAGCAA--------------CCGGAGCAGCA-----------------------GCCCCA---------CG---------TCC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
GGCTGCTCTTCGGCCAGC--------------------TCC-------A-----------CC-T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTCCCACGCCGTCTCCTCATCATCGTCATCAAGCTGCTCGGAGCATTTTGGTCGCTCATCCGCTGTCGTTGCCGCAGCAGCA------GCAGCAGCCGCAGCAGCAGCAGCCGCAGTC------GCATCTACATCCACGTC----GCTTGTCAAT---------------------------------------GTCAGCGGGA---------AC----------------------GCTCATACATCCTCGTCAGCGGTC------AG---------------------CTCCAG---CTC---TAGCT------------------------------------CCAGCAACAA--------------CTGCAGTCCCA-----------------------GCTCCA---------TCT-----CCATCGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCAGCAGCA------GCAGCAGCCGCAGC...........................................................................................................................................................................................................................................................................................................................................2670.1410100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCA------GCAGCAGCCGCAGCA..........................................................................................................................................................................................................................................................................................................................................21200.1020200000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA------GCAGCAGCCGCAGCAGCA.......................................................................................................................................................................................................................................................................................................................................20200.1020200000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA------GCAGCAGCCGCAGCAGCAGCAG...................................................................................................................................................................................................................................................................................................................................24200.0510100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA------GCAGCAGCCGCAGCAGCAGCAGC..................................................................................................................................................................................................................................................................................................................................25200.0510100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCAGCAGCA------GCAGCAGCC................................................................................................................................................................................................................................................................................................................................................20200.0510100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA------GCAGCAGCCGCAGCAGCAG......................................................................................................................................................................................................................................................................................................................................23200.0510100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCA------GCAGCAGCCGCAGCAGCAGCA....................................................................................................................................................................................................................................................................................................................................26200.0510100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA------GCAGCAGCCGCAGCA..........................................................................................................................................................................................................................................................................................................................................19200.0510100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA------GCAGCAGCCGCAGCAGCAGCA....................................................................................................................................................................................................................................................................................................................................23200.0510100000000
droPer2
GGCTGCTCTTCGGCCAGC--------------------TCC-------A-----------CC-T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTCCCACGCCGTCTCCTCATCATCGTCGTCAAGCTGCTCGGAGCATTTTGGTCGCTCATCCGCTGTCGTTGCCGCAGCAGCAGCAGCAGCAGCAGCCGCAGCAGCAGCAGCCGCAGTC------GCATCTACATCCACGTC----GCTTGTCAAT---------------------------------------GTCAGCGGGA---------AC----------------------GCTCATACATCCTCGTCAGCGGTC------AG---------------------CTCCAG---CTC---TAGCT------------------------------------CCAGCAACAA--------------CTGCAGTCCCA-----------------------GCTCCA---------TCT-----CCATCGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCCGCAGCAGCAGCAGC..................................................................................................................................................................................................................................................................................................................................19200.051010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCCGCAGCAGCAGCA....................................................................................................................................................................................................................................................................................................................................23200.051010000
droWil2
CTCCTCAT--CATCATC------------------CTCATC-------A-----------TC-G--TCATC------------------------------------------------------------------GTCATC-----------------------GTCATCAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATCATCATCAGGTGGTGCCCAT--------------------------------------------G--CCTCTCCAGATAGCGGCTGCTCT---------------TCAGCCTCATCCTCATCTCAGATTGTTTCCTCATCATCGTCATCAACTTGCTCGGAGCATTTCACTAACTCATCAGCGGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTTCCAGCTCCAGTTCCAATTG---------------CAA---CAG---------------------------------------------CAT-TGCA--------ACAGCAGCAGCA-----------------------GTTGCA---------G----------CCGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
GGCGCCACTTTCACCGG-----------------CCGCCAC-------G-----------CC-C-----CC---------------------------------------------------------GCC----------------------------GCGTAACGCCAACAC-----GC---------C-GCAACAGTCGGCGGTAAGCAGCAGCGCCCAAAACGCA--------------------GCCCAAACGCTGGA---G---------CAGCAA---------C-------------------------------------------AGC------AG---CAGCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGCAGCAGCAGCAGCAGCAGCAGACGAGCTC----------CCGCGATTCCCGCTC---CATTTCGCCGGACGTG---------------------------------------ACAC------------------------------------GTTTGTCGG-------------------------------------------CGG---CCGCT------------------------------------GCAGCCGCCG--------------CCGCAGCCGCT---------GCCGCCCATTGCCAGCTGCC----------CG-----TCTTCASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAGCAGCAGCA..............................................................................................................................................................................................................................................................................................................................21200.204000000000000000000000000000000000004000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................CAGCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGCAGCAGCAGCA.......................................................................................................................................................................................................................................................................................................................................20200.153000000000000000001000000000000000000200000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................C------AG---CAGCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGCAGCAGCA..........................................................................................................................................................................................................................................................................................................................................20200.102002000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCAGCAGCAGCAGCA.................................................................................................................................................................................................................................................................................................................................21200.102000000000000000000000010000000000100000000000000000000000000000
.........................................................................................................................................................................................................................................................................................A---------C-------------------------------------------AGC------AG---CAGCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGCA................................................................................................................................................................................................................................................................................................................................................18200.102002000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAGCAGACGA.........................................................................................................................................................................................................................................................................................................................20170.061000100000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................G---CAGCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGCAGCAGCAGCAG......................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000000010000000000000000000000000000000
......................................................................................................................................................................................................................................................................................GCAA---------C-------------------------------------------AGC------AG---CAGCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACA...................................................................................................................................................................................................................................................................................................................................................18200.051000000000000000000000000000000010000000000000000000000000000000
......................................................................................................................................................................................................................................................................A---G---------CAGCAA---------C-------------------------------------------AGC------AG---CAGCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGCA................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................AGC------AG---CAGCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGCAGCAGCAGCAGCA....................................................................................................................................................................................................................................................................................................................................28200.051000000000000000000000000000000000000010000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAGCAGC..................................................................................................................................................................................................................................................................................................................................18200.051000000000000000000000000000000000001000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................G---CAGCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGCAGCAGCAGCAGCAGCA.................................................................................................................................................................................................................................................................................................................................27200.051001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................A---------C-------------------------------------------AGC------AG---CAGCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGCAGCAGCAGCA.......................................................................................................................................................................................................................................................................................................................................27200.051000000000000000000000000000000000000100000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................GC------AG---CAGCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGCAGCAGCAGCA.......................................................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000000001000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................A---------C-------------------------------------------AGC------AG---CAGCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGCAGC..............................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000000000000000000000000000000000000000100
droMoj3
AGCAGCAGCACAGCC--------------------AGCATC-------A-----------TC-A-----CAGC-----------GCT-------------------------------------GCAG-----CCGTGGCCGCTGCAGCAGCAGCTGCCG------------------------------------------CGGTGC------------ATCACCAGCAGCAG---G-CGGTA--------CA------------G------CAGCAGCA---GCAG-------------------------CAGGTGC---------------AGCAGCAACAT---CAG------CAACAGCAGCAACAGCAG------------------C-----------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCAGCAGCAGCAA----------------------------------------------------------CAGCAGCAGCA---ACATCATCATCATCATCAGCAGCAAGTTG--CTGCTGTTGCCATGGCAGCGATGGCCAAT------TTGTTGCCACA-----------------------GCAGCA---------GCT-------GTTGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...................................................................................................................................................................................................................................................................................................................................................................................AGCAG------------------C-----------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCAGCAGCA.............................................................................................................................................................................................................19200.204000040
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCAA----------------------------------------------------------CAGC...........................................................................................................................................19200.204020020
......................................................................................................................................................................................................................................................................................................................................................................................AG------------------C-----------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCAGCAGCAGCAA----------------------------------------------------------CAGC...........................................................................................................................................24200.051000010
............................................................................................................................................................................................................................................................................................................................................................................CAGCAACAGCAG------------------C-----------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGC....................................................................................................................................................................................................................19200.051000010
.......................................................................................................................................................................................................................................................................................................................................................................................G------------------C-----------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCAGCAGCAGCAA----------------------------------------------------------CAGCAGCA.......................................................................................................................................27200.051100000
...............................................................................................................................................................................................................................................................................................................................................................G------CAACAGCAGCAACAGCAG------------------C-----------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCAGC.................................................................................................................................................................................................................29200.051000010
..................................................................................................................................................................................................................................................................................AGCAGCA---GCAG-------------------------CAGGTGC---------------AGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051001000
...........................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAGCAG------------------C-----------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCA......................................................................................................................................................................................................................18200.051000010
..........................................................................................................................................................................................................................................................................................................................................................................................................C-----------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCAGCAGCAGCAA----------------------------------------------------------CAGCAGCAGCA---.................................................................................................................................29200.051000010
droGri2
GGCAGCGGCAGCGGC--------------------AGCAGC-------A-----------GC-A------------------------------------------------------------GCAG-----CAGCGGCAGCAGCAGCAGCAGCAGCAGC-----------------TCT---------GG--------------TC------------AGCAGCAGCAGCAG---C-T--------------------------GCAGCAGC------AG---------CAGCAGCA-G------------CGGCAGC---------------AGCAG---------------------------------------------------CAGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCGGCAG------------CAGCAGCAGC--------------AGC---------------------------------------AGCGGCAGCAGCAGCAGCGGCAGCAGCAGCAGCAGCAG----------------------------C------AG---------------------CAGCAG---CAG---CAGCG------------------------GCA---------GCAGCAGCAG--------------CGGCAGCGGCA-----------------------GCGGCA---------GCA-----GCAGCASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCG------------------------GCA---------GCAGCAGCAG--------------CGGC...........................................................22200.05101
droAna3
AGGAACTGCGGCCAC-----GAC-----------CAGCAGT-------A-----------GT-T-TGCACCCCTACGATCACTATCCCTTTCGGG------------------------AGTC--------------GCAATCAGGACGAGCCACTCCCTT-----------------TCC---------CG--------------CC------------TGTCCCACCA----------------------------CCACGGCCGCAGCAGCAGC-------------------------------------------------------------------AG---C---T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGGCGGCGGCAGCAGCTGCTGCAGTC------ACAGCAGCTTCAGTCAC----CCTGAGCAGC---------------------------------------AGCA---------GCAGCAACACCACTCCCGCCAGCAG----------------------------C------AA---------------------TTCCAC---TAC---CACTA------------------------GTA---------GTGGGAGCAG--------------TGCCCCCATCA-----------------------GTGGCA------CCACCT-----CCA-TGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................................................................................................................................................................................................................................................................GCAGCAGC-------------------------------------------------------------------AG---C---T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGGCGGC..............................................................................................................................................................................................................................................................................................................................................2011.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCAGTCAC----CCTGAGCAGC---------------------------------------...............................................................................................................................................................................................................................................2011.001100000
.............................................................................................................................................................................................................................GTCCCACCA----------------------------CCACGGCCGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTC------ACAGCAGCTTCAGTCAC----CCT.............................................................................................................................................................................................................................................................................................2311.001010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTC------ACAGCAGCTTCAGT.......................................................................................................................................................................................................................................................................................................2011.001000010
.............................................................................................................................................................................................................................GTCCCACCA----------------------------CCACGGCCGCAGCAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGCGGCGGCAGCAGCT....................................................................................................................................................................................................................................................................................................................................1830.331010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGAGCAGC---------------------------------------AGCA---------GCAGCC............................................................................................................................................................................................................................2040.251010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAGC---------------------------------------AGCA---------GCAGCAAC..........................................................................................................................................................................................................................19170.061010000
droBip1
GTTGTCAAGTT----------------------------CC-------A-----------CC-A-C-------------------CAATT-----GA-C-------------------------CC--------------ATCCAATGGTCCAT--------------CA---CCACCAGT---------T------------------------GCACCACCATCATCATCATGCGGCT--------------------------GCGGCGGC------GG---------C----------------------------------------------------AG---CAGCAGCGGC------------T------------GCAGCAGCAGCAGCTGCCGCCCAT--------------------------------------------CATGCCCACCATCTACTGGCTGCCCA---------------TCATCCTCATTCCCAT----------------------------------------------------------------------------------------------------------------------------------------------------------CCATTGGCCGCCACCCACCCGCACCTGCAC-------------------------------------------------------------------------------------------------------------------------GTT------------------------------------CCGGTGGCAG---------------TGCATCCGCA-----------------------CTCCCA---------TCT-----CCAACASizeHit CountTotal NormTotal
No Reads
droKik1
AGCGGCTCAGCAGCAGG-------------------------------------------------CTGCCCA-----------GCAAC--AGGCGGCGGCCGCC------------------C----ATCAG-----------------------------------CA---GCACCAGC---------A-GCAAGTGG--CGGC------------ACAGCATCAGCAACAGGCGGCAG---TGGCTGCCCA------------T------CAGCAGCAACAACAGCAGC-------TGCAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGCAATTGCTGCAGTTGTCCAT-------CCAACAGGCG----GCTCATCACC---------------------------------------ATCAGCAGGAGCAGCACCGTCAACAGCAGCAGCAGCAG----------------------------C------AA---------------------CACCAG---CAA---CAGCA------------------------------------GCAGCAACAA--------------CAGCAGCAGCA-----------------------GCAACA---------GCA-----CCATCASizeHit CountTotal NormTotal
No Reads
droFic1
AGCCGCTGCACGGCC--------------------AGCAGC-------A-----------CC-T-T-------------------CACCC----------------------------------GC--------------AGCTGTCGCCGCACCACCTGC-----------------TCT---------CG---------------C---------CGCAGCAGCAGCAACTGGCCGCC--------------------------G------C------------------AGTGGCG-G---------TGGC-CGCGC---------------AGCAG---------------------------CAGCACCAGCAGCAGCAGCAGCAGCAGCAAG--------------------------------------CGAAGCTGATGGACATGAAGCCCATGTTCCTGGGGCCCCTCTCAAGCCGGAGCTCCTGCAGGCGCCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGATGCACAGTCC-----------------------------------------------------------------------------G---------------------GCGCAG---CAG---CA---------------------------------------GCAGCAGCAA--------------CAGCAGCAGCA-----------------------ATCGTC---------GCC-----GCACCTSizeHit CountTotal NormTotal
No Reads
droEle1
CGG--CCCCATCTCC-C------AGTTCCCCCACTGGCAGC-------A----------------------CC-----------TCATCCACGACGATCGCCGAGGA-----------GGACGT----CGCAC--------------------------------------------------------------------------------------------CAGCAGT-------------------------------GGTG----------------------------------------------------C---------------AGCAGCAGCAT---CAGCAGCATC------------A------------GCAGCAGCAGCAGCCACTTCGCATCCAGCACCGCCACAGCCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCTA---------------------------------TCCGCCCGTGCATACCTCAATGGCACT-------GCAC-------------------------------------------------C------AC---------------------TTCCAG---CAG---CAGCA------------------------------------ACAGCAACAG--------------CCGCAG---GA-----------------TCGCCAGTTGCA---------ACG-----CCACCASizeHit CountTotal NormTotal
No Reads
droRho1
ACCACCTCCACCGCTAC------------------ATCATC---------------------------------------------------------------------------------------ATCAC--------------------------------------------------------------------------------------------CAGCATCAG---C-AGCAG--------CC------------A------CATCAACA---------CC-------AGCAG---------CATCCGCAGT------TGCAACATCCA------------------CAGCTGCAGCAGCAGCAG------------------CA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCAGCAAC-----------------------------------------------------------------------------------------AACAGCACCTGACAGTCATGGATAATCACCAGCAA-C---ATCAG---------------CCGCATATCCATCAGCAA---CAG---------------------------------------------CAA--------------CAGCAGCAGCAGCAACAATTGCCA------------CCCA---------CGCCGCAGGCATCGSizeHit CountTotal NormTotal
No Reads
droBia1
AACAGCAG--------TCAACGC-----------CCACCAC-------A-----------CA-T-TCCACGCCCACGCATGCGGTCATGTACGAG------------------------GATCC----TCCGC------------CTGTGCC------------------------------------------AATTGTCGCCGTGC------------AGCAGCAACTCCTC---C-CCGCT--------CC------------G------------------CAGCAGC-------AGC------------------------------------------AACTCCAGCAGCAGCAGCAGCAGCAA------------------------CAGCTGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGACAACACC----GGTGGCCGGC---------------------------------------GCCCTCAGTC---------CC----------------------GCCCAAACACCCACTGG----------------------------------------------ACCC-TCCGC------------------------------------CCAG---CAA--------CAGCAGCAGCAGCAACA-----------------------TC--------------TC-----ACATCGSizeHit CountTotal NormTotal
No Reads
droTak1
CTCCAATGCCCG-CCTCC-----------TCATCGAGCATCCCTCAGCATTGTTGGTACCCC-TCTCCTCGC--------------------------------------------------------ATCACCAGTTGCAGTTGCAACAGCAG-----------------------------------------------------------------------CAGCAGCAG---C-AGCAA--------CA------------G------CAGC----------------------------------------------------AGCAACAGCAC------------------GTGCAGCAGCAACACCAGCAGCAGCAGCAGCAA---CA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTCCAACAGCAGCAGCAGCAGCAG----------------------------C------AT---------------------CTCCAC---CAG---CAGCA------------------------------------GCAGGATCAA--------------CTGCAGTTCCA-----------------------GCAACAGCACCTCCAGCT-----TTA-TGSizeHit CountTotal NormTotal
No Reads
droEug1
GGCTGTTCGTCGGCCTCC--------------------TCC-------T-----------CC-GGATCATC------------------------------------------------------------------GGGATCCTGTGGATCCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTCCCACGCGGTCTCCTCCTCGTCGTCGTCCAGCTGCTCGGAGCATTTCGCGCGGAGTA---------------------------------------------------------------------------------C----AGTTGTCAAT---------------------------------------GTCAGCGGCC---------AC----------------------GCTCATACATCCTCGTCAGCGGTC---------------------------------AG---CAG---TAGCA------------------------------------ACAACAACAA--------------CAGCAGTACAA-----------------------GCACCA---------GCA-----ACAACASizeHit CountTotal NormTotal
No Reads
dm3
CT--GCTGGGCGGCGGTC--------------------TGC-------A-----------CC-TGGCCACGCC-----------GCACC--AGATGGTCGCCGCGGGCGGTTCGCCGGTGATGC----TTCAC---------------CAGCAG--------------CA---------------------------------------------------------GCAGCAG---C-AGCAA--------CA------------T------CAGCAGCAACAGCAGCAAC-------AGCAG---------CAGCAGC------AGCATCAACAGCAG------------------CAACAGCAGCAACATCAA------------------C-----------------------AGCAGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGC------------A------------------------ACATCAGCAG-C---AGC---------------AGCAGCAACACCACCAGCA------------------------------------------------------A--------------C------AGCA-----------------------GCAGCA---------TCA-----TCACCASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................................................................................................CGCGGGCGGTTCGCCGGTGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................C-AGCAA--------CA------------T------CAGCAGCAACAGCAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................C------AGCATCAACAGCAG------------------CAACAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................CAACAGCAGCAAC-------AGCAG---------CAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.70140000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000020000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000100000000000000000000070000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC---------------AGCAGCAACACCACCAGC.....................................................................................................................................2190.6760000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGC------------A------------------------ACATCAGCAG-C---AGC---------------AGCAGCA................................................................................................................................................26150.5380000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000050000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------------------------------------------------A--------------C------AGCA-----------------------GCAGCA---------TCA-----TCACC.2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA------------------------------------------------------A--------------C------AGCA-----------------------GCAGCA---------TCA-----TCACCA2520.5010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................ATCAACAGCAG------------------CAACAGCAGCAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................A--------CA------------T------CAGCAGCAACAGCAGCAAC-------A................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................AA--------CA------------T------CAGCAGCAACAGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.5010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC---------------AGCAGCAACACCACCAGC.....................................................................................................................................20110.4550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................AGCAACATCAA------------------C-----------------------AGCAGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGC------------A------------------------AC......................................................................................................................................................................................2730.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................CATCAACAGCAG------------------CAACAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2060.3320000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACACCACCAGCA------------------------------------------------------A--------------C------AGCA-----------------------.............................2030.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGC------------A------------------------ACATCAGCAG-C---AGC---------------AGCA...................................................................................................................................................3030.3310000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------------------ACATCAGCAG-C---AGC---------------AGCAGCAACA.............................................................................................................................................2530.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................A--------CA------------T------CAGCAGCAACAGCAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2030.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAACATCAA------------------C-----------------------AGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................CAGCAAC-------AGCAG---------CAGCAGC------AG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.3060000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000100000100000000000000000000000000000000000000000000000010000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACCAGCA------------------------------------------------------A--------------C------AGCA-----------------------GCAGCA---------..............2180.2520000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................ACATCAA------------------C-----------------------AGCAGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAG..............................................................................................................................................................................................................................1980.2520000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................................................................AG---C-AGCAA--------CA------------T------CAGCAGCAACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2340.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................................................................................................................GCAGCAACAGCAGCAAC-------A................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGC------------A------------------------ACATCAGCAG-C---AGC---------------AGCAG..................................................................................................................................................26120.2530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................AAC-------AGCAG---------CAGCAGC------AGCATC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................GCAACAGCAGCAAC-------AGCAG---------CA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................GCAA--------CA------------T------CAGCAGCAACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19140.2130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000
.............................................................................................................................................................................................................................................................................................CAGCAAC-------AGCAG---------CAGCAGC------AGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.2040000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000001000
........................................................................................................................................................................................................................................................................................................................................CATCAACAGCAG------------------CAACAGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2250.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................ATCAA------------------C-----------------------AGCAGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGC------------A------------------------ACA.....................................................................................................................................................................................2250.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
............................................................................................................................................................................................................................................................................................................................................................................CAGCAACATCAA------------------C-----------------------AGCAGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAG..............................................................................................................................................................................................................................2450.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGC------------A------------------------ACATCAGC................................................................................................................................................................................21200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000
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CT--GCTGGGCGGCGGTC--------------------TGC-------A-----------CC-TGGCCACGCC-----------GCACC--AGATGGTCGCCGCGGGCGGTTCGCCGGTGATGC----TTCAC--------------------------------------------------------------------------------------------CAGCAGCAG---C-AGCAA--------CA------------T------CAGCAGCAACAGCAGCAGC-------AGCAGC------------------------ATCAACAGCAA------------------CAGCAGCAGCAACATCAGCAGCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGCAGCAGCAGCAA----------------------------------------------------------CACCACCAGCA---ACAGCAGCAGCATCATCACCAGCAATTTGGC-----------------------------------CAGCAGCAGCA-----------------------TCCCCA---------TGC-----CCATCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
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...................................................................................................................................................................................................................................................A--------CA------------T------CAGCAGCAACAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................17200.05100000000001000000
droSec2
CT--GCTGGGCGGCGGTC--------------------TGC-------A-----------CC-TGGCCACGCC-----------GCACC--AGATGGTCGCCGCGGGCGGTTCGCCGGTGATGC----TTCAC--------------------------------------------------------------------------------------------CAGCAGCAG---C-AGCAA--------CA------------T------CAGCAGCAACAGCAGCAGC-------AGCAGC------------------------ATCAACAGCAG------------------CAGCAGCAGCAACATCAGCAGCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGCAGCAGCAGCAA----------------------------------------------------------CACCACCAGCA---ACAGCAGCAGCATCATCACCAGCAATTTGGC-----------------------------------CAGCAGCAGCA-----------------------TCCCCA---------TGC-----CCATCASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........................................................................................................................................................................................................................................................................................................................................ATCAACAGCAG------------------CAGCAGCAGCAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2440.2510100
................................................................................................................................................................................................................................................................................................CAGC-------AGCAGC------------------------ATCAACAGCAG------------------C.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2280.1310001
.........................................................................................................................................................................................................................................G---C-AGCAA--------CA------------T------CAGCAGCAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20130.0810010
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.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAGCA---ACAGCAGCAGC......................................................................................................................18200.0510010
............................................................................................................................................................................................................................................................................................................................................AACAGCAG------------------CAGCAGCAGCAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAA----------------------------------------------------------CACCA..........................................................................................................................................19200.0510010
droYak3
CT--GCTGGGCGGCGGTC--------------------TGC-------A-----------CC-TGGCCACGCC-----------GCACC--AGATGGTCGCCGCGGGCGGTTCGCCGGTGATGC----TCCAC--------------------------------------------------------------------------------------------CAGCAGCAG---C-AGCAT--------CA------------G------CAGCAACA---ACAGCAGC-------AGCAG---------------CAGCAGCAACATCAACAGCAG------------------CAGCAGCAGCAA------------------------CA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGC------------A------------------------TCATCAGCAG-C---AAC---------------AGCAACAACACCACCAGCA------------------------------------------------------A--------------CAGCAG---CA-----------------------GCAGCA---------TCA-----TCATCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
............................................................................................................................................................................................................................................................................................................................................AACAGCAG------------------CAGCAGCAGCAA------------------------C.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.10202000000000
..................................................................................................................................................................................................................................................................................................................................................AG------------------CAGCAGCAGCAA------------------------CA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGC------------A------------------------T.......................................................................................................................................................................................23100.10100000010000
............................................................................................................................................................................................................................................................................................ACAGCAGC-------AGCAG---------------CAGCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.10202000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAG---CA-----------------------GCAGCA---------TCA-----TCATC.21110.09101000000000
.....................................................................................................................................................................................................................................................................................AACA---ACAGCAGC-------AGCAG---------------CAGCAGCAACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28110.09101000000000
......................................................................................................................................................................................................................................................................................ACA---ACAGCAGC-------AGCAG---------------CAGCAGCAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26130.08101000000000
.................................................................................................................................................................................................................................................................................................................................GCAGCAACATCAACAGCAG------------------CA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21160.06101000000000
.....................................................................................................................................................................................................................................................................................................................................CAACATCAACAGCAG------------------CAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20180.06100000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAGCA------------------------------------------------------A--------------CAGCAG---CA-----------------------GCAGC........................21190.05101000000000
..........................................................................................................................................................................................................................................................................G------CAGCAACA---ACAGCAGC-------AGCAG---------------CAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05101000000000
......................................................................................................................................................................................................................................................................................ACA---ACAGCAGC-------AGCAG---------------CAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100010000000
.................................................................................................................................................................................................................................................................................................................................................CAG------------------CAGCAGCAGCAA------------------------CA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGC------------.................................................................................................................................................................................................................22200.05100010000000
.............................................................................................................................................................................................................................................................................................CAGCAGC-------AGCAG---------------CAGCAGCAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05101000000000
..................................................................................................................................................................................................................................................................................................................................................AG------------------CAGCAGCAGCAA------------------------CA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGC------------.................................................................................................................................................................................................................21200.05100010000000
..............................................................................................................................................................................................................................................................................................................................................CAGCAG------------------CAGCAGCAGCAA------------------------CA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGC------------.................................................................................................................................................................................................................25200.05101000000000
.................................................................................................................................................................................................................................................................................CAGCAACA---ACAGCAGC-------AGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100000010000
.................................................................................................................................................................................................................................................................................................AGC-------AGCAG---------------CAGCAGCAACATC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100010000000
.........................................................................................................................................................................................................................................................................................................................................ATCAACAGCAG------------------CAGCAGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05101000000000
.............................................................................................................................................................................................................................................................................................................................................ACAGCAG------------------CAGCAGCAGCAA------------------------CA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------..................................................................................................................................................................................................................................21200.05101000000000
droEre2
AGCAGCAGCAACCGC--------------------CG-TTG-------A-----------TCCT------------------------------------------------------------CTCG-----CAGGCTCTGCTGTCGCCATCGCCACCGCTCAACGATC---AGATCAGCTTGCTATTCC-CCAAGTGC--CGAC------------CCA--------------------------------------------------------AGCAGCAGCAGCACT-------CGCAGCAGCAGCAGCACTCGC---------------AGCAG---------------------------CAACTTCAGC--------------------------------CAGCACAACAGCAGCAGCAGCAACATGTCCTCCCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGACGTG------AA---------------------TCCCAG---CTG---CAACA------------------------------------GCAACAGCAA--------------CCGGAGCAGCA-----------------------GCCCCA---------CG---------TCCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
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Generated: 05/18/2015 at 06:19 AM