ID:

dps_3176

 Coordinate:

XR_group6:12461732-12462000 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dpse\GA23943-cds]; exon [dpse_GLEANR_13440:1]; exon [dpse_GLEANR_13440:2]; CDS [Dpse\GA23943-cds]; intron [Dpse\GA23943-in]

No Repeatable elements found

Sense Strand Reads

--------------------------------##################-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TGAATAAACAAATACACTGGAAATAGCTGGAAATGGAAAAAGTTAAACTGGTAAGAGCTTTTCCCTAAAACAGAAGCAGCCGATGATTGTGAGACTCCAACATCGTGAGTCATCGGGTAGTGTGGGGTAACCCGCTTCCCCCGATAAGGCCACCTGCGACGCGACTGTTGACCATATTTGTGGGACCATTATACGAATATCTGTTGGTTAATTTCTTTATAAATGCGCATGTTCGCCGCTCGAAATTTGGGGCTTAGAGCGTGGGTGAACGTTTTGAAAGTGAATGTAATCACGAATAAATGTTTGAATCTCGTTGCAGGAGTCGCTCTCTCTGGCCCACTCGCTGTCGGACAAGCCGCTGCCACCCTC
**************************************************......((((((.........))))))....((((.(((.((...)))))))))(((.(((((((((....(((((....)))))....))))))..))))))((((((((.((..((((((((((((((((.........)))))))).....))))))))............((.(((((((...((((........))))...))))))).))((((((((.....((((......))))....))))))))...)).))))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 M022
male body		 V112
male body		 M059
embryo
 GSM343916
embryo
 SRR902010
ovaries
.........................................GTTAAGCTGGTAAGAGCCT..................................................................................................................................................................................................................................................................................................................... 19 2 1 143.00 143 107 25 9 1 1 0
........................................AGTTAAGCTGGTAAGAGCCT..................................................................................................................................................................................................................................................................................................................... 20 2 1 38.00 38 25 7 6 0 0 0
......................................GTAGTTAAGCTGGTAAGAGC....................................................................................................................................................................................................................................................................................................................... 20 3 2 36.00 72 49 3 20 0 0 0
.......................................TAGTTAAGCTGGTAAGAGCCT..................................................................................................................................................................................................................................................................................................................... 21 3 1 14.00 14 12 0 2 0 0 0
........................................AGTTAAGCTGGTAAGAGC....................................................................................................................................................................................................................................................................................................................... 18 1 1 13.00 13 10 3 0 0 0 0
........................................AGTTAAGCTGGTAAGAGCC...................................................................................................................................................................................................................................................................................................................... 19 2 1 8.00 8 8 0 0 0 0 0
........................................AGTTAAGCTGGTAAGAGCCTG.................................................................................................................................................................................................................................................................................................................... 21 3 1 6.00 6 5 0 1 0 0 0
..........................................TTAAGCTGGTAAGAGCCT..................................................................................................................................................................................................................................................................................................................... 18 2 2 5.50 11 8 3 0 0 0 0
.........................................GTTAAGCTGGTAAGAGCCTG.................................................................................................................................................................................................................................................................................................................... 20 3 5 5.00 25 11 0 14 0 0 0
.........................................GTTAAGCTGGTAAGAGCC...................................................................................................................................................................................................................................................................................................................... 18 2 4 3.50 14 14 0 0 0 0 0
......................................GTAGTTAAGCTGGTAAGAG........................................................................................................................................................................................................................................................................................................................ 19 3 12 1.75 21 16 0 5 0 0 0
.......................................TAGTTAAGCTGGTAAGAGC....................................................................................................................................................................................................................................................................................................................... 19 2 2 1.50 3 3 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................GAGTCGCTCTCTCTGGCCCACT............................ 22 0 1 1.00 1 1 0 0 0 0 0
.............................GAAATGGAAAAAGTTAAACTG............................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0
.......................................TAGTTAAGCTGGTAAGAGCC...................................................................................................................................................................................................................................................................................................................... 20 3 6 0.50 3 3 0 0 0 0 0
.........................................GTTAAGCTGGTAAGAGCTTGA................................................................................................................................................................................................................................................................................................................... 21 3 2 0.50 1 1 0 0 0 0 0
.......................................TAGTTAAGCTGGTAAGAG........................................................................................................................................................................................................................................................................................................................ 18 2 5 0.40 2 2 0 0 0 0 0
..........................................TTAAGCTGGTAAGAGCCTG.................................................................................................................................................................................................................................................................................................................... 19 3 16 0.38 6 5 0 1 0 0 0
........................................AGTTAAGCTGGTGAGAGC....................................................................................................................................................................................................................................................................................................................... 18 2 5 0.20 1 1 0 0 0 0 0
..................................................................................................................GTGAAGTGTTGGGTAACCCG........................................................................................................................................................................................................................................... 20 3 5 0.20 1 0 0 1 0 0 0
.....................................................................................................................................................................TGGTGACCATATCTGTCGGA........................................................................................................................................................................................ 20 3 8 0.13 1 1 0 0 0 0 0
..........................CTGGAAATGGGATAAGTT..................................................................................................................................................................................................................................................................................................................................... 18 2 13 0.08 1 0 0 0 0 0 1
......................................................................................................................................................................................................................................................................CGGTGGTCGTTTTGAAAGT........................................................................................ 19 3 19 0.05 1 1 0 0 0 0 0
........................................AGTTAAGCTGCTAAGAGCC...................................................................................................................................................................................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0
..........................................CTAAGCTGGTAAGAGCCT..................................................................................................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 1 0 0 0 0
.....................AACAGCGGGAAGTGGAAAAA........................................................................................................................................................................................................................................................................................................................................ 20 3 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

ACTTATTTGTTTATGTGACCTTTATCGACCTTTACCTTTTTCAATTTGACCATTCTCGAAAAGGGATTTTGTCTTCGTCGGCTACTAACACTCTGAGGTTGTAGCACTCAGTAGCCCATCACACCCCATTGGGCGAAGGGGGCTATTCCGGTGGACGCTGCGCTGACAACTGGTATAAACACCCTGGTAATATGCTTATAGACAACCAATTAAAGAAATATTTACGCGTACAAGCGGCGAGCTTTAAACCCCGAATCTCGCACCCACTTGCAAAACTTTCACTTACATTAGTGCTTATTTACAAACTTAGAGCAACGTCCTCAGCGAGAGAGACCGGGTGAGCGACAGCCTGTTCGGCGACGGTGGGAG
**************************************************......((((((.........))))))....((((.(((.((...)))))))))(((.(((((((((....(((((....)))))....))))))..))))))((((((((.((..((((((((((((((((.........)))))))).....))))))))............((.(((((((...((((........))))...))))))).))((((((((.....((((......))))....))))))))...)).))))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 GSM343916
embryo
 GSM444067
head
 V112
male body
.................................................................................CTACTACCACTCTAAGCTTG............................................................................................................................................................................................................................................................................ 20 3 6 1.83 11 9 0 1 1
........................................................................................................................................................................................................................................................................................AGTTACATTAGTGCTTATTTA.................................................................... 21 1 2 0.50 1 1 0 0 0
..................................................................................................................................................TCCGGTCGGCGCTACGCTGA........................................................................................................................................................................................................... 20 3 7 0.43 3 3 0 0 0
................................................................................GCTACTACCACTCTAAGCTTG............................................................................................................................................................................................................................................................................ 21 3 3 0.33 1 1 0 0 0
................................................................................GCTACTACCACTCTAAGCTT............................................................................................................................................................................................................................................................................. 20 3 6 0.17 1 1 0 0 0
....................................TGCTTCAATTTGACCATGC.......................................................................................................................................................................................................................................................................................................................... 19 3 10 0.10 1 0 1 0 0
.......................................................................TCTTAGTCGACTACTAAC........................................................................................................................................................................................................................................................................................ 18 2 17 0.06 1 0 1 0 0
..........................................................................................................................................................................................................................................................................................................TTACAAACTAAGAGCAACAA................................................... 20 3 20 0.05 1 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 XR_group6:12461682-12462050 + dps_3176 TG------------AAT-----AAACAAA------------TA-CACTG-GAAAT---AGCTGGAAATGGAAAAAGTTAAACTGGTAAGAGC--T--TTT-CC-------------------CT-A-----------------------------------------AAACAGAAGCA------G-CCG------------------------ATGATTGTGAGACTCCAACATCGTGAGTCATC-------GGGTAGTGTGGGGTAACCCG-------------CTTCCCCCGATAAGGCCACCTGCGACGCGACTGTTGACCATAT-----------TT-G-TGGGACCATTATACGAATATCTGTTG-GTTAATTTCTTTATAAATGCGCATGTTCGCCGCTCGAAATTTGG-------GGCTTAG------AGC-GTGGGTG-------------A--A-CGTTTTGAAAGTGAA-----------T--GTAATCACGAATA----AATGTTT----------------------------------------------------------------------------GAAT-----------CTC-------G----TTGCAGGAGTCGCTCTCTCTGGCCCACTCGCTGTCGGACAAGCCGCTGCCACCCTC
droPer2 scaffold_33:483289-483652 + TG------------AAT-----AAACAAA------------TA-CACTG-GAAAT---AGCTGGAAATGGAAAAAGTTAAACTGGTAAGAGC--T--TTT-CT-------------------CT-A-----------------------------------------AAACAGAAGCA------G-CCG------------------------ATGATTGTGAGACTC------CGTGAGTCATC-------GGGTAGTGTGGGGTAACCCG-------------CTTCCCCCGATAAGGCCACCTGCGACGCGACTGTTGACCATAT-----------TT-G-TGGGCCCATTATACGAATTTCTGTTG-GTTAATTTCTTTATAAATGCGCATGTTCGCCGCTCGAAATTTGG-------GGCTTAG------AGC-GTGGGTG-------------A--A-CGTTTTGAAAGTGAA-----------T--GTAATCACGAATAA---AATGTTT----------------------------------------------------------------------------GAAT-----------CTC-------G----TTGCAGGAGTCGCTCTCTCTGGCCCACTCGCTGTCGGACAAGCCGCTGCCACCCTC
droWil2 scf2_1100000004729:2075776-2076002 + C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGATAAGGTCGAGATCGAAAAAGATGTTCTCTATAT--------------T-TGGTTATATGTA---TAT--C--TTG-TTTAATTTCTTTTTAAATGCC-----------A---AAACTTTG-------GTCATAG------AGCAGTGTGTGGGCGT----------------ACACAAAACGAGAGCAAAATACACAC---ATCATTA-A-----CGAGTCT----------------------------------------------------------------------------TTAA-----------TTTATTTTGCCCAATCAACAGGAATCGCTATCTTTGGCCCATTCGCTGTCGGACAAGCCATTACCACCATC
droVir3 scaffold_10322:275237-275289 + --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGAATCACTTTCTCTGGCCCACTCCATATCGGACAAGACGTTGCCGCCGTC
droMoj3 scaffold_6680:2319928-2319980 + --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGAATCACTTTCGCTGGCCCAATCGATCTCGGATAAGCCACTCCCACCATC
droGri2 scaffold_15110:240531-240583 - --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGAATCGCTTTCTCTGGCGCACTCGATCTCCGATAAACCGTTGCCGCCGTC
droAna3 scaffold_13337:516949-517382 + A--------------GC-----AGGCAAA------------TA-CGGC--GAAATCGGCGCTGCC-ATGGAAAAAGTAAAACTGGTAAAAGC--T--TTT-CC-------------------CT-AAA-C-----------AAA----CC--GCTCATTAGG-----AGCCACAATCG----------C-AGT---------CGTAGTGGCAGGTG-------------------TTGACTCACC-------G--AA--TGGGAACAACCCGGC----------------GCAGATAAGGTCGC---------GATTGTTGACCATAT--------------T-TGTGGCTATTAA---G-------TTT-GTTAATTTCTTTATAAACGCGTTTATGCGCGACTC-ATATTCGGCCTGTTCGACCTGG------GGC-GTGGGTGGCTC---------A--C-CATTTGGAAAGTGAA-----------C--GTAATCACGA-C-T-G--TCCCCCACATTTGGGCAATTGTGAATATTCATG--AGAGATCACTTCAAAGCTTAAACCGAATAAT----------------GAAGCTCATTTCTACG-C--CGTATCC--CTTTCAGGAATCGCTCTCCTTGGCCCACTCGCTGTCGGACAAGCCGCTGCCCCCGTC
droBip1 scf7180000395155:244010-244431 - A--------------A------AGGCAAA------------GT-CGGTG-GCAGT---GGCTGGC-ATGGAAAAAGTAAAACTGGTAAAAGC--T--TTT-TC-------------------CT-TAAAC-----------AAA----CC--TTTTATTAGGATTATAGCTAGAAGTGGT-------------------------AGCAGCAGGTGG------------------CTGACTCA----------------TGGGAACAACCCAACGCTGAGGCCGGC--CACTCGATAAGGCCGC---------GATTGTTGACCATAT--------------T-TGTGGCTATTAA---AAT------TT-GTTAATTTCTTTATAAACGCG----------ACTC-ATATTTGG-------TATTTGG------AGC-GTGGGTGGTTC---------A--G-TCTTTGGAAAGTGAA-----------C--GTAATCACGA-T-T-GTCTCCTCTACTTTAGGACAAATATTAATATTCATTTTGGAGATCATCT------TGAAACCGAATACTATAATACACTGTATCTGTAT---------------------CT--CTTGCAGGAATCGCTCTCTTTGGCCCACTCGCTGTCGGACAAGCCGCTGCCTCCATC
droKik1 scf7180000302441:1253520-1253905 - A----ATAGCTAATAGC---GAGAGCAAA------------CAAAGCTAATAAGTAGCCGCCGGC-ATGGAGAGAGTAAAACTGGTAAAAGC--T--TTT-CCCTGCTC-------------C----TCC--------CAGACAGCTCCT--GTT---------GACAATCTAA-----------------TTTAACCCTCTAACGGTGGCAGGTG-------------------CTTAGTCATC-------GGGTTTTTGGGAACAACCCA------------------GCCGATATCGCCAC---------GACTGTTGACCATAT--------------T-TGCGGCTATTAA---AAT-----TTG-GTTAATTTCTTTATAAACGCG-----------TTC-ATATTTGG--------GCCTGA------AGC-GTGGGAGGTTTCAATCTTCAA-AA-GTTTTGGAAAGTGAA-----------TGTGTAATCAAGA-TGGTG-TTCCTCT----------------------------------------------------------------------------C----------------T--ATTTGGC--ATTTCAGGAATCGCTATCTTTGGCCCACTCGCTGTCGGACAAGCCGCTGCCACCGTC
droFic1 scf7180000454105:813899-814260 + CA------------AAT-----AAACAAACAAACCAGCAAACA-AGCTATTCAAT---CGCCGGC-ATGGAAAAAGTAAAACTGGTAAAAGC--G--TTT-CC--------------------T-CGTCCCCTCATCTCCGAAA----CT--GTT---------GACAAACAGAAGCGTTTT-AG-CCG------------------------A---------GA----------GTGACTCATC-------CG-AA-TGGGGAACAACCCAGCGATG--------------CCTTAT---CGC----CA---GATTGCCGACCATAT------------T-T-CGAGGCCATTAA---G-T-----TTC-GTTAATTTCTTTATAAACGCG-----------CTC-TTATTTGG-------GAATTAG------AGC-GTGGGTGGTCCCG-------A-----GTTTGGAAAGTGAA-----------C--GCAATCACGA-C-----CTCATCT----------------------------------------------------------------------------CG---------------T--CTTTCCG--ATTTCAGGAGTCGCTGTCGCTGGCCCACTCGCTCTCGGACAAGCCGCTGCCCCCCTC
droEle1 scf7180000491249:2923122-2923444 - GT-AAATCGCTAATAAT-----AAACAAA-----------------------------------C-ATGGAAAAAGTAAAACTGGTAAAAGC--T--TTT-TC-------------------CT-CAAACC--------AAAAA----CTAAGTT---------GATAAACAGAAGCG------G-CCC-----------------------------------A----------GTGAGTCATC-------CAAAA-TTGGGAACGACCCA-------------------------------T---------GATTGTTGACCATATA-----CATTTAT-T-CGAGGCTATTAA---AAT-----GTGTGTTAATTTCTTTATAAACGCG-----------TTC-ATATTTGG-------TGCTTAGAGCTCCAGT-GTGGGAGGTTCA--------A--A-ATTTTGGAAAGTGAA-----------T--GTAATCATGGAT-------TGT---------------------------------------------------------------------------------------------TTT-------GG--ATTTCAGGAATCGCTATCTTTGGCCCACTCGCTGTCGGACAAGCCACTGCCCCCCTC
droRho1 scf7180000780275:169277-169630 + CG-------CTAATAAT-----AAACAAA------------CA-AGCTATTAAAA---CGCCGGC-ATGGAAAAAGTAAAACTGGTAAAAGC--T--TTT-TC-------------------CT-CATCC---------CAAAA----CC--GTT---------GACAAACAGAAGCGTTTTCGGTCCC-ATT-------------------------CGT-------------CGTGAGTCATC-------GC-GA-TTGGGAACAACCCA------------------GCCGATAAGGCCGC----CA---GATTGTTGACCATAT-----------AT-T-CGAGGCTATTAA---AAC-----TTT-GTTAATTTCTTTATAAACGCG-----------TTC-ATATTTGG-------GGCTTAG------AGC-GTGGGAGGTCTA--------A--A-ATTTTGGAAAGTGAA-----------T--GTAATCACGA-T-----CTCGTTT----------------------------------------------------------------------------GTTT-----------TTT-------GG--ATTTCAGGAATCGCTATCTTTGGCCCACTCGCTGTCGGACAAGCCGCTGCCCCCCTC
droBia1 scf7180000302428:9255864-9256229 + CG-------CTAATAAT-----AAACAAA------------CA-AGCTGTTAAAT---CGCCGGC-ATGGAAAAAGTAAAACTGGTAAAAGCAAGCTCTTTCCCTTCCCCTCCTTTC-----CT-CAGCTC---------AAAA----CT--GTT---------GACAAACAGAAGCGCTGC-GG-T----------------------------------GAG-----------GTGACTCATC-------TG-AA-TTGGGAACAACCCG------------------GCCGATAAGGCCGT----GA---GATGGCTGACCATAT-----------AT-T-CGGGGCCATTAA---AAT-----ATT-GTTAATTTCTTTATAAACGCG-----------CTC-ATACTTGG-------GGCTTAG------AGC-GTGGGCGGTCTTA-------A--G-TTTTTGGAAAGTGAA-----------C--GTAATCACGA-T-----CTCGTCT----------------------------------------------------------------------------AACT-----------CTT-------GT--GTTTCAGGAATCGCTATCTCTGGCCCACTCGCTGTCGGACAAGCCACTGCCCCCATC
droTak1 scf7180000415857:246845-247230 + CA------------AATATAG-AAACAAA------------CA-AGCTATTAAAT---CGCCGGC-ATGGAAAAAGTAAAACTGGTAAAAGC--TCTTTTTCCTTTCCCATATTTCCCTTACCT-CAAACTACA-----AAAAA----CT--GTT---------GACAAACAGAAGCGTTTT-G------------------------------------T--------------GTGACTCATGGCTCATTTAAAA-TTGGGAACAACCCA------------------GGCGATAAGGCCGT----CA---GATTGTTGACCATAT-----------AT-T-CGAGGCTATTAA---AAT-----CTT-GTTAATTTCTTTATAAACGCA--TA-------TTC-ATATTTGG-------AGCTTAG------AGC-GTGGGTGGTCTTG-------AGTATTTTTTGGAAAGTGAA-----------C--GTAATCACGAAT-----CTCGTCT----------------------------------------------------------------------------A-CT-----------TTT--TTTTTGT--TTTTCAGGAATCACTATCTTTGGCCCACTCGCTGTCGGATAAACCACTGCCCCCATC
droEug1 scf7180000409466:216298-216680 + CGCTAATCGCTAATAAA-----AAACAAA------------CA-AGCTATTAAAT---CGTCAGC-ATGGAAAAAGTTAAACTGGTAAAAGC--T--CTT-TC-------------------CT-CAAACCTTAACCATTAAAA----CT--GTT---------GACAAACAGAAGCCTTTT-GG-CTTAATT-------------------------TGTGAGA----------GTGAGTCATG-------GG-GA-TTGGGAACAACCCA------------------GCCGATAAGGCCGC----GA---GATTGTTGACCATATTCGAGCCATACAT-T-CGAGGCTATTAA---AAT-----TTT-GTTAATTTCTTTATAAACGCG-----------TTC-ATATTTGG-------CGGTTAG------AGC-GTGGGTGGTCTTA-------A----GTTTTGGAAAGTGAA-----------C--GTAATCACGA-T-----CTCGTCT----------------------------------------------------------------------------AACT-----------CTT-------GT--GTTTCAGGAATCGCTATCTTTGGCCCACTCGCTGTCGGACAAGCCACTGCCCCCCTC
dm3 chr3L:2494717-2495060 + -------------TAAT-----AAACAAA------------CA-AGCTATTAAAT---CGCAGGC-ATGGAAAAAGTAAAACTGGTAAAAGC--T--TTT-TC-------------------CTTCAATAC--------AAAAA----CC--TTT---------GGCAAACAGAAGCGTTTT-GG-CCC----------------------------------------------GTGAGTCATT-------CG-AA-TTGGGAACAACCCA------------------GCCGATAAGGCCGC----GA---GACTGTTGACCATAT-----------ATTTTGGAGGCTATTAA---AAC-----TTG-GTTAATTTCTTTATAAACGCG-----------TTC-ATATTTGG-------GCCTTAG------AGC-GTGGGTGGTCCCA-------A--A-TTTTTGGAAAGTGAA-----------T--GTAATCACGA-T-----CTCGTCT----------------------------------------------------------------------------AACT-----------CTT-------GT--TTTTCAGGAATCGCTATCTTTGGCCCACTCGCTGTCGGACAAACCACTGCCCCCATC
droSim2 3l:2382275-2382615 + -------------TAAT-----AAACAAA------------CA-AGCTATTAAAT---CGCAGGC-ATGGAAAAAGTAAAACTGGTAAAAGC--T--TTT-TC-------------------CT-CAATCC--------AAAAA----CC--TTT---------GGCAAACAGAAGCGTTGT-GG-CCC----------------------------------------------GTGACTCATT-------GG-AA-TTGGGAACAACCCA------------------GCCGATAAGGCCGC----GA---GATTGTTGACCATAT-----------AT-T-GGAGGCTATTAA---AAC-----TTG-GTTAATTTCTTTATAAACGCG-----------TTC-ATATTTGG-------GGCTTAG------AGC-GTGGGTGGTCCCA-------A--A-TTTTTGGAAAGTGAA-----------T--GTAATCACGA-T-----CTCGTCT----------------------------------------------------------------------------AACT-----------CTT-------GT--TTTTCAGGAATCGCTATCTTTGGCCCACTCGCTGTCGGACAAACCACTGCCCCCATC
droSec2 scaffold_2:2515864-2516204 + -------------TAAT-----AAACAAA------------CA-AGCTATTAAAT---CGCAGGC-ATGGAAAAAGTAAAACTGGTAAAAGC--T--TTT-TC-------------------CT-CAATCC--------AAAAA----CC--TTT---------GGCAAACAGAAGCGTTGT-GG-CCC----------------------------------------------GTGAGTCATT-------GG-AA-TTGGGAACAACCCA------------------GCCGATAAGGCCGC----GA---GACTGTTGACCATAT-----------AT-T-GGAGGCTATAAA---AAC-----TTG-GTTAATTTCTTTATAAACGCG-----------TTC-ATATTTGG-------GGCTTAG------AGC-GTGGGTGGTCCCA-------A--A-TTTTTGTAAAGTGAA-----------T--GTAATCACGA-T-----CTCGTCT----------------------------------------------------------------------------AACT-----------CTT-------GT--TTTTCAGGAATCGCTATCTTTGGCCCACTCGCTGTCGGACAAACCACTGCCCCCATC
droYak3 3L:9446317-9446660 - --------------AAT-----AAACAAA------------CA-AGCTATTAAAT---CGCCGGC-ATGGAAAAAGTAAAATTGGTAAAAGC--T--TTT-TC-------------------CA-CAATCC--------CAAAA----CG--TTT---------GGCAAACAGAAGTGTTTT-GG-CCC----------------------------------------------ATGAGTCATT-------TGGAA-TTGGGAACAACCCAACG---------------GCCGATAAGGCCGC----AA---GATTGTTGACCATAT-----------AC-T-GAAGGCTATTAA---GAT-----TTG-GTTAATTTCTTTATAAACGCG-----------TTC-ATATTTGG-------AGCTTAG------AGC-GTGGGTGGTCTCA-------A--A-TTTTTGGAAAGTGAA-----------C--GTAATCACGA-T-----CTCGTCT----------------------------------------------------------------------------TACT-----------CTT-------GT--TTTGCAGGAATCGCTATCGTTGGCCCACTCGCTGTCGGACAAACCACTGCCCCCATC
droEre2 scaffold_4784:2506784-2507127 + C---------TAATAGT-----AAACAAA------------CA-AGCTATTAAAT---CGCCGGC-ATGGAAAAAGTAAAACTGGTAAAAGC--T--TTT-TC-------------------CT-CAATCC--------AAAAA----C---GTT---------TGCAAACAGAAGCGTTTC-GG-CCC----------------------------------------------ATGACTCATT-------GG-TA-TTGGGAACAACCCA------------------GCCGATAAGGCCGC----CA---AAAAGTTGACCATAT-----------AT-T-GGAGGCTATTAA---GAC-----TTT-GTTAATTTCTTTATAAACGCG-----------TTC-ATATTTGG--------GCTTAG------AGC-GTGGGTGGTCCTA-------C--ATTTTTTGGAAAGTGAA-----------T--GCAATCACGA-T-----CTCGTCT----------------------------------------------------------------------------TACG-----------CTT-------GT--TTTTCAGGAATCGCTATCTTTGGCCCACTCGCTGTCGGACAAACCACTGCCCCCATC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
TG------------AAT-----AAACAAA------------TA-CACTG-GAAAT---AGCTGGAAATGGAAAAAGTTAAACTGGTAAGAGC--T--TTT-CC-------------------CT-A-----------------------------------------AAACAGAAGCA------G-CCG------------------------ATGATTGTGAGACTCCAACATCGTGAGTCATC-------GGGTAGTGTGGGGTAACCCG-------------CTTCCCCCGATAAGGCCACCTGCGACGCGACTGTTGACCATAT-----------TT-G-TGGGACCATTATACGAATATCTGTTG-GTTAATTTCTTTATAAATGCGCATGTTCGCCGCTCGAAATTTGG-------GGCTTAG------AGC-GTGGGTG-------------A--A-CGTTTTGAAAGTGAA-----------T--GTAATCACGAATA----AATGTTT----------------------------------------------------------------------------GAAT-----------CTC-------G----TTGCAGGAGTCGCTCTCTCTGGCCCACTCGCTGTCGGACAAGCCGCTGCCACCCTCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCGCTCTCTCTGGCCCACT............................2211.0010100000000
...............................................................GAAATGGAAAAAGTTAAACTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
droPer2
TG------------AAT-----AAACAAA------------TA-CACTG-GAAAT---AGCTGGAAATGGAAAAAGTTAAACTGGTAAGAGC--T--TTT-CT-------------------CT-A-----------------------------------------AAACAGAAGCA------G-CCG------------------------ATGATTGTGAGACTC------CGTGAGTCATC-------GGGTAGTGTGGGGTAACCCG-------------CTTCCCCCGATAAGGCCACCTGCGACGCGACTGTTGACCATAT-----------TT-G-TGGGCCCATTATACGAATTTCTGTTG-GTTAATTTCTTTATAAATGCGCATGTTCGCCGCTCGAAATTTGG-------GGCTTAG------AGC-GTGGGTG-------------A--A-CGTTTTGAAAGTGAA-----------T--GTAATCACGAATAA---AATGTTT----------------------------------------------------------------------------GAAT-----------CTC-------G----TTGCAGGAGTCGCTCTCTCTGGCCCACTCGCTGTCGGACAAGCCGCTGCCACCCTCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
TG------------AAT-----AAACAAA------------TA-CACTG-GA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
.....................................................AT---AGCTGGAAATGGAAAAAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAGCCGCTGCCACCCT.1911.001010000
droWil2
C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGATAAGGTCGAGATCGAAAAAGATGTTCTCTATAT--------------T-TGGTTATATGTA---TAT--C--TTG-TTTAATTTCTTTTTAAATGCC-----------A---AAACTTTG-------GTCATAG------AGCAGTGTGTGGGCGT----------------ACACAAAACGAGAGCAAAATACACAC---ATCATTA-A-----CGAGTCT----------------------------------------------------------------------------TTAA-----------TTTATTTTGCCCAATCAACAGGAATCGCTATCTTTGGCCCATTCGCTGTCGGACAAGCCATTACCACCATCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTATCTTTGGCCCATTCGCTGTCGGA..................2811.00100100
droVir3
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGAATCACTTTCTCTGGCCCACTCCATATCGGACAAGACGTTGCCGCCGTCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGAATCACTTTCGCTGGCCCAATCGATCTCGGATAAGCCACTCCCACCATCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGGATAAGCCACTCCCACCATC2418.008500003
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCGGATAAGCCACTCCCACCATC2713.003200001
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGATAAGCCACTCCCACCATC2312.002200000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGGATAAGCCACTCCCAC....2011.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAGCCACTCCCACCATC2011.001100000
droGri2
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGAATCGCTTTCTCTGGCGCACTCGATCTCCGATAAACCGTTGCCGCCGTCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
A--------------GC-----AGGCAAA------------TA-CGGC--GAAATCGGCGCTGCC-ATGGAAAAAGTAAAACTGGTAAAAGC--T--TTT-CC-------------------CT-AAA-C-----------AAA----CC--GCTCATTAGG-----AGCCACAATCG----------C-AGT---------CGTAGTGGCAGGTG-------------------TTGACTCACC-------G--AA--TGGGAACAACCCGGC----------------GCAGATAAGGTCGC---------GATTGTTGACCATAT--------------T-TGTGGCTATTAA---G-------TTT-GTTAATTTCTTTATAAACGCGTTTATGCGCGACTC-ATATTCGGCCTGTTCGACCTGG------GGC-GTGGGTGGCTC---------A--C-CATTTGGAAAGTGAA-----------C--GTAATCACGA-C-T-G--TCCCCCACATTTGGGCAATTGTGAATATTCATG--AGAGATCACTTCAAAGCTTAAACCGAATAAT----------------GAAGCTCATTTCTACG-C--CGTATCC--CTTTCAGGAATCGCTCTCCTTGGCCCACTCGCTGTCGGACAAGCCGCTGCCCCCGTCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................................................ATCGGCGCTGCC-ATGGAAAAAGTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
............................................................................................................................................................................................C-AGT---------CGTAGTGGCAGGTG-------------------TTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
..............................................................................................................................................................TAGG-----AGCCACAATCG----------C-AGT---------CGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCTCTCCTTGGCCCACTCGCTGTCG....................2711.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCGCTCTCCTTGGCCCACTCGCTGT......................2811.001100000
droBip1
A--------------A------AGGCAAA------------GT-CGGTG-GCAGT---GGCTGGC-ATGGAAAAAGTAAAACTGGTAAAAGC--T--TTT-TC-------------------CT-TAAAC-----------AAA----CC--TTTTATTAGGATTATAGCTAGAAGTGGT-------------------------AGCAGCAGGTGG------------------CTGACTCA----------------TGGGAACAACCCAACGCTGAGGCCGGC--CACTCGATAAGGCCGC---------GATTGTTGACCATAT--------------T-TGTGGCTATTAA---AAT------TT-GTTAATTTCTTTATAAACGCG----------ACTC-ATATTTGG-------TATTTGG------AGC-GTGGGTGGTTC---------A--G-TCTTTGGAAAGTGAA-----------C--GTAATCACGA-T-T-GTCTCCTCTACTTTAGGACAAATATTAATATTCATTTTGGAGATCATCT------TGAAACCGAATACTATAATACACTGTATCTGTAT---------------------CT--CTTGCAGGAATCGCTCTCTTTGGCCCACTCGCTGTCGGACAAGCCGCTGCCTCCATCSizeHit CountTotal NormTotal
No Reads
droKik1
A----ATAGCTAATAGC---GAGAGCAAA------------CAAAGCTAATAAGTAGCCGCCGGC-ATGGAGAGAGTAAAACTGGTAAAAGC--T--TTT-CCCTGCTC-------------C----TCC--------CAGACAGCTCCT--GTT---------GACAATCTAA-----------------TTTAACCCTCTAACGGTGGCAGGTG-------------------CTTAGTCATC-------GGGTTTTTGGGAACAACCCA------------------GCCGATATCGCCAC---------GACTGTTGACCATAT--------------T-TGCGGCTATTAA---AAT-----TTG-GTTAATTTCTTTATAAACGCG-----------TTC-ATATTTGG--------GCCTGA------AGC-GTGGGAGGTTTCAATCTTCAA-AA-GTTTTGGAAAGTGAA-----------TGTGTAATCAAGA-TGGTG-TTCCTCT----------------------------------------------------------------------------C----------------T--ATTTGGC--ATTTCAGGAATCGCTATCTTTGGCCCACTCGCTGTCGGACAAGCCGCTGCCACCGTCSizeHit CountTotal NormTotal
No Reads
droFic1
CA------------AAT-----AAACAAACAAACCAGCAAACA-AGCTATTCAAT---CGCCGGC-ATGGAAAAAGTAAAACTGGTAAAAGC--G--TTT-CC--------------------T-CGTCCCCTCATCTCCGAAA----CT--GTT---------GACAAACAGAAGCGTTTT-AG-CCG------------------------A---------GA----------GTGACTCATC-------CG-AA-TGGGGAACAACCCAGCGATG--------------CCTTAT---CGC----CA---GATTGCCGACCATAT------------T-T-CGAGGCCATTAA---G-T-----TTC-GTTAATTTCTTTATAAACGCG-----------CTC-TTATTTGG-------GAATTAG------AGC-GTGGGTGGTCCCG-------A-----GTTTGGAAAGTGAA-----------C--GCAATCACGA-C-----CTCATCT----------------------------------------------------------------------------CG---------------T--CTTTCCG--ATTTCAGGAGTCGCTGTCGCTGGCCCACTCGCTCTCGGACAAGCCGCTGCCCCCCTCSizeHit CountTotal NormTotal
No Reads
droEle1
GT-AAATCGCTAATAAT-----AAACAAA-----------------------------------C-ATGGAAAAAGTAAAACTGGTAAAAGC--T--TTT-TC-------------------CT-CAAACC--------AAAAA----CTAAGTT---------GATAAACAGAAGCG------G-CCC-----------------------------------A----------GTGAGTCATC-------CAAAA-TTGGGAACGACCCA-------------------------------T---------GATTGTTGACCATATA-----CATTTAT-T-CGAGGCTATTAA---AAT-----GTGTGTTAATTTCTTTATAAACGCG-----------TTC-ATATTTGG-------TGCTTAGAGCTCCAGT-GTGGGAGGTTCA--------A--A-ATTTTGGAAAGTGAA-----------T--GTAATCATGGAT-------TGT---------------------------------------------------------------------------------------------TTT-------GG--ATTTCAGGAATCGCTATCTTTGGCCCACTCGCTGTCGGACAAGCCACTGCCCCCCTCSizeHit CountTotal NormTotal
No Reads
droRho1
CG-------CTAATAAT-----AAACAAA------------CA-AGCTATTAAAA---CGCCGGC-ATGGAAAAAGTAAAACTGGTAAAAGC--T--TTT-TC-------------------CT-CATCC---------CAAAA----CC--GTT---------GACAAACAGAAGCGTTTTCGGTCCC-ATT-------------------------CGT-------------CGTGAGTCATC-------GC-GA-TTGGGAACAACCCA------------------GCCGATAAGGCCGC----CA---GATTGTTGACCATAT-----------AT-T-CGAGGCTATTAA---AAC-----TTT-GTTAATTTCTTTATAAACGCG-----------TTC-ATATTTGG-------GGCTTAG------AGC-GTGGGAGGTCTA--------A--A-ATTTTGGAAAGTGAA-----------T--GTAATCACGA-T-----CTCGTTT----------------------------------------------------------------------------GTTT-----------TTT-------GG--ATTTCAGGAATCGCTATCTTTGGCCCACTCGCTGTCGGACAAGCCGCTGCCCCCCTCSizeHit CountTotal NormTotal
No Reads
droBia1
CG-------CTAATAAT-----AAACAAA------------CA-AGCTGTTAAAT---CGCCGGC-ATGGAAAAAGTAAAACTGGTAAAAGCAAGCTCTTTCCCTTCCCCTCCTTTC-----CT-CAGCTC---------AAAA----CT--GTT---------GACAAACAGAAGCGCTGC-GG-T----------------------------------GAG-----------GTGACTCATC-------TG-AA-TTGGGAACAACCCG------------------GCCGATAAGGCCGT----GA---GATGGCTGACCATAT-----------AT-T-CGGGGCCATTAA---AAT-----ATT-GTTAATTTCTTTATAAACGCG-----------CTC-ATACTTGG-------GGCTTAG------AGC-GTGGGCGGTCTTA-------A--G-TTTTTGGAAAGTGAA-----------C--GTAATCACGA-T-----CTCGTCT----------------------------------------------------------------------------AACT-----------CTT-------GT--GTTTCAGGAATCGCTATCTCTGGCCCACTCGCTGTCGGACAAGCCACTGCCCCCATCSizeHit CountTotal NormTotal
No Reads
droTak1
CA------------AATATAG-AAACAAA------------CA-AGCTATTAAAT---CGCCGGC-ATGGAAAAAGTAAAACTGGTAAAAGC--TCTTTTTCCTTTCCCATATTTCCCTTACCT-CAAACTACA-----AAAAA----CT--GTT---------GACAAACAGAAGCGTTTT-G------------------------------------T--------------GTGACTCATGGCTCATTTAAAA-TTGGGAACAACCCA------------------GGCGATAAGGCCGT----CA---GATTGTTGACCATAT-----------AT-T-CGAGGCTATTAA---AAT-----CTT-GTTAATTTCTTTATAAACGCA--TA-------TTC-ATATTTGG-------AGCTTAG------AGC-GTGGGTGGTCTTG-------AGTATTTTTTGGAAAGTGAA-----------C--GTAATCACGAAT-----CTCGTCT----------------------------------------------------------------------------A-CT-----------TTT--TTTTTGT--TTTTCAGGAATCACTATCTTTGGCCCACTCGCTGTCGGATAAACCACTGCCCCCATCSizeHit CountTotal NormTotal
No Reads
droEug1
CGCTAATCGCTAATAAA-----AAACAAA------------CA-AGCTATTAAAT---CGTCAGC-ATGGAAAAAGTTAAACTGGTAAAAGC--T--CTT-TC-------------------CT-CAAACCTTAACCATTAAAA----CT--GTT---------GACAAACAGAAGCCTTTT-GG-CTTAATT-------------------------TGTGAGA----------GTGAGTCATG-------GG-GA-TTGGGAACAACCCA------------------GCCGATAAGGCCGC----GA---GATTGTTGACCATATTCGAGCCATACAT-T-CGAGGCTATTAA---AAT-----TTT-GTTAATTTCTTTATAAACGCG-----------TTC-ATATTTGG-------CGGTTAG------AGC-GTGGGTGGTCTTA-------A----GTTTTGGAAAGTGAA-----------C--GTAATCACGA-T-----CTCGTCT----------------------------------------------------------------------------AACT-----------CTT-------GT--GTTTCAGGAATCGCTATCTTTGGCCCACTCGCTGTCGGACAAGCCACTGCCCCCCTCSizeHit CountTotal NormTotal
No Reads
dm3
-------------TAAT-----AAACAAA------------CA-AGCTATTAAAT---CGCAGGC-ATGGAAAAAGTAAAACTGGTAAAAGC--T--TTT-TC-------------------CTTCAATAC--------AAAAA----CC--TTT---------GGCAAACAGAAGCGTTTT-GG-CCC----------------------------------------------GTGAGTCATT-------CG-AA-TTGGGAACAACCCA------------------GCCGATAAGGCCGC----GA---GACTGTTGACCATAT-----------ATTTTGGAGGCTATTAA---AAC-----TTG-GTTAATTTCTTTATAAACGCG-----------TTC-ATATTTGG-------GCCTTAG------AGC-GTGGGTGGTCCCA-------A--A-TTTTTGGAAAGTGAA-----------T--GTAATCACGA-T-----CTCGTCT----------------------------------------------------------------------------AACT-----------CTT-------GT--TTTTCAGGAATCGCTATCTTTGGCCCACTCGCTGTCGGACAAACCACTGCCCCCATCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................................................................................................................................................C--TTT---------GGCAAACAGAAGCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACGA-T-----CTCGTCT----------------------------------------------------------------------------AACT-----------CTT-------G............................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................TAAACGCG-----------TTC-ATATTTGG-------GC...............................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................AA----CC--TTT---------GGCAAACAGAAGCGTTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................CGATAAGGCCGC----GA---GACTGTT.......................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.........................................................................................................................................................TT---------GGCAAACAGAAGCGTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................TT-------CG-AA-TTGGGAACAACCCA------------------G....................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................GCTATTAAAT---CGCAGGC-ATGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
........................................................................................................................................................TTT---------GGCAAACAGAAGCGTTTT-................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACTCGCTGTCGGACAAACCACT.........2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGA-T-----CTCGTCT----------------------------------------------------------------------------AACT-----------CTT-------GT--AA.......................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................ATTAAAT---CGCAGGC-ATGGAAAAAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................TTT---------GGCAAACAGAAGCGTTTT-G...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCGGACAAACCACTGCCCC....2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................AATAC--------AAAAA----CC--TTT---------GGCAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTGGCCCACTCGCTGTCGG...................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................C-ATATTTGG-------GCCTTAG------AGC-GTGGGT..........................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
......................................................................................................................................................................CAAACAGAAGCGTTTT-GG-CCC----------------------------------------------............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACGA-T-----CTCGTCT----------------------------------------------------------------------------AACT-----------CTT-------G............................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................GCCGC----GA---GACTGTTGACCATAA-----------TC..................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................TGG-------GCCTTAG------AGC-GTGGGTGG........................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................TCATT-------CG-AA-TTGGGAACAACCAT------------------C....................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................ATTTTGGAGGCTATTAA---AAC-----TTG-....................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATCTTTGGCCCACTCGCTGTCGGA..................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACGA-T-----CTCGTCT----------------------------------------------------------------------------AACT-----------CT.....................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTCAGGAATCGCTATCTTTGGCC................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTGTCGGACAAACCACTG........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
................................................ATTAAAT---CGCAGGC-ATGGAAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................TTGACCATAT-----------ATTTTGGAGGC.........................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGGCCCACTCGCTGTCGGAC.................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTGGCCCACTCGCTGTCGGACAAA..............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................A----CC--TTT---------GGCAAACAGAAGCGTTTT-................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
.....................................................................................................................................................................GCAAACAGAAGCGTTTT-GG-CCC----------------------------------------------GT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTGGCCCACTCGCTGTC.....................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................TAAAT---CGCAGGC-ATGGAAAAAGTAAAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
droSim2
-------------TAAT-----AAACAAA------------CA-AGCTATTAAAT---CGCAGGC-ATGGAAAAAGTAAAACTGGTAAAAGC--T--TTT-TC-------------------CT-CAATCC--------AAAAA----CC--TTT---------GGCAAACAGAAGCGTTGT-GG-CCC----------------------------------------------GTGACTCATT-------GG-AA-TTGGGAACAACCCA------------------GCCGATAAGGCCGC----GA---GATTGTTGACCATAT-----------AT-T-GGAGGCTATTAA---AAC-----TTG-GTTAATTTCTTTATAAACGCG-----------TTC-ATATTTGG-------GGCTTAG------AGC-GTGGGTGGTCCCA-------A--A-TTTTTGGAAAGTGAA-----------T--GTAATCACGA-T-----CTCGTCT----------------------------------------------------------------------------AACT-----------CTT-------GT--TTTTCAGGAATCGCTATCTTTGGCCCACTCGCTGTCGGACAAACCACTGCCCCCATCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGGCCCACTCGCTGTCGGACT................2412.00200200000000000000
.....................................................................................................................................................................GCAAACAGAAGCGTTGT-GG-C............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000000000
...........................................................................................................................................................................................................................................................................................................................TTGTTGACCATAT-----------AT-T-GGAGGC.........................................................................................................................................................................................................................................................................................................................................2211.00110000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGG-------GGCTTAG------AGC-G...............................................................................................................................................................................................................................................1711.00100000000001000000
droSec2
-------------TAAT-----AAACAAA------------CA-AGCTATTAAAT---CGCAGGC-ATGGAAAAAGTAAAACTGGTAAAAGC--T--TTT-TC-------------------CT-CAATCC--------AAAAA----CC--TTT---------GGCAAACAGAAGCGTTGT-GG-CCC----------------------------------------------GTGAGTCATT-------GG-AA-TTGGGAACAACCCA------------------GCCGATAAGGCCGC----GA---GACTGTTGACCATAT-----------AT-T-GGAGGCTATAAA---AAC-----TTG-GTTAATTTCTTTATAAACGCG-----------TTC-ATATTTGG-------GGCTTAG------AGC-GTGGGTGGTCCCA-------A--A-TTTTTGTAAAGTGAA-----------T--GTAATCACGA-T-----CTCGTCT----------------------------------------------------------------------------AACT-----------CTT-------GT--TTTTCAGGAATCGCTATCTTTGGCCCACTCGCTGTCGGACAAACCACTGCCCCCATCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
....................................................AAT---CGCAGGC-ATGGAAAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTATCTTTGGCCCACTCGCT........................2211.0010010
.....................................................AT---CGCAGGC-ATGGAAAAAGTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTGGCCCACTCGCTGTCGGACA................2511.0010010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATCTTTGGCCCACTCGCTGTCGGAC.................2711.0011000
........................................................................................................................................................TTT---------GGCAAACAGAAGCGTTGT-................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
..................................................................................................................................................................................TTGT-GG-CCC----------------------------------------------GTGAGTCATT-------GG-A.......................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010001
droYak3
--------------AAT-----AAACAAA------------CA-AGCTATTAAAT---CGCCGGC-ATGGAAAAAGTAAAATTGGTAAAAGC--T--TTT-TC-------------------CA-CAATCC--------CAAAA----CG--TTT---------GGCAAACAGAAGTGTTTT-GG-CCC----------------------------------------------ATGAGTCATT-------TGGAA-TTGGGAACAACCCAACG---------------GCCGATAAGGCCGC----AA---GATTGTTGACCATAT-----------AC-T-GAAGGCTATTAA---GAT-----TTG-GTTAATTTCTTTATAAACGCG-----------TTC-ATATTTGG-------AGCTTAG------AGC-GTGGGTGGTCTCA-------A--A-TTTTTGGAAAGTGAA-----------C--GTAATCACGA-T-----CTCGTCT----------------------------------------------------------------------------TACT-----------CTT-------GT--TTTGCAGGAATCGCTATCGTTGGCCCACTCGCTGTCGGACAAACCACTGCCCCCATCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................ATTAAAT---CGCCGGC-ATGGAAAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
....................................................................................................................................................................................................................................................................................................................................ATAT-----------AC-T-GAAGGCTATTAA---GAT-----TTG-G...................................................................................................................................................................................................................................................................................................................2611.00100000010000
.......................AACAAA------------CA-AGCTATTAAAT---CGCCGGC-.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--GTAATCACGA-T-----CTCGTCT----------------------------------------------------------------------------T.....................................................................................2011.00100100000000
.............................................................................................................................................................................................................................................................................................................................................................................................TTATAAACGCG-----------TTC-ATATTT..........................................................................................................................................................................................................................................................................2011.00101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGTTGGCCCACTCGCTGTC.....................2111.00101000000000
droEre2
C---------TAATAGT-----AAACAAA------------CA-AGCTATTAAAT---CGCCGGC-ATGGAAAAAGTAAAACTGGTAAAAGC--T--TTT-TC-------------------CT-CAATCC--------AAAAA----C---GTT---------TGCAAACAGAAGCGTTTC-GG-CCC----------------------------------------------ATGACTCATT-------GG-TA-TTGGGAACAACCCA------------------GCCGATAAGGCCGC----CA---AAAAGTTGACCATAT-----------AT-T-GGAGGCTATTAA---GAC-----TTT-GTTAATTTCTTTATAAACGCG-----------TTC-ATATTTGG--------GCTTAG------AGC-GTGGGTGGTCCTA-------C--ATTTTTTGGAAAGTGAA-----------T--GCAATCACGA-T-----CTCGTCT----------------------------------------------------------------------------TACG-----------CTT-------GT--TTTTCAGGAATCGCTATCTTTGGCCCACTCGCTGTCGGACAAACCACTGCCCCCATCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
................................................ATTAAAT---CGCCGGC-ATGGAAAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100
..............................................................GGC-ATGGAAAAAGTAAAACTGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010001000

Generated: 05/18/2015 at 06:17 AM