dps_3152

exon [dpse_GLEANR_13381:8]; exon [dpse_GLEANR_13381:7]; CDS [Dpse\GA19937-cds]; CDS [Dpse\GA19937-cds]; intron [Dpse\GA19937-in]

Name	Class	Family	Strand
(GGA)n	Simple_repeat	Simple_repeat	+

##################################################---------------------------------------------------------------################################################## AGGAGCCAACAACAACAATAACAACAGCACCAGCAACAACAACAACAACGGTGGAGGCGGAGCAGTAGCAGGAGGAGGAGGAGGAGGTGGAGGATCAGCGTCAGCAGGAGGAGCAACCGCACCGATCTCCACCCAACCCCTGGGACTGGGCCCCATGGGTGGT ********************************************************************.............((.((.((...)).)).))...........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M040 female body	M059 embryo	GSM343916 embryo	M062 head	SRR902010 ovaries	GSM444067 head	V112 male body
.........................................................................................................AGGAGGAGCAACCGCACCGATCTC..................................	24	0	1	1.00	1	0	1	0	0	0	0	0
..............................................AACGGTGGAGGCGGAGCA...................................................................................................	18	0	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................................................CACCGATCTCCACCCAACCCCTGGG...................	25	0	1	1.00	1	1	0	0	0	0	0	0
.....................................AACAACAACAACGGTGGAGGCGGAGC....................................................................................................	26	0	1	1.00	1	0	1	0	0	0	0	0
.......................................CAACAACAACGGTGGAGGC.........................................................................................................	19	0	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................GTCAGCAGGAGGAGCAACC.............................................	19	0	1	1.00	1	1	0	0	0	0	0	0
............................................................................................GATCAGCGTCAGCAGGAGGAG..................................................	21	0	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................................CCGATCTCCACCCAACCCCTGGG...................	23	0	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................CGTCAGCAGGCGGAGCAACC.............................................	20	1	1	1.00	1	0	0	1	0	0	0	0
.................................................................................................GCGTCAGCAGGAGGAGCAACCG............................................	22	0	1	1.00	1	1	0	0	0	0	0	0
..........................................................................................AGGATCAGCGTCAGCAGGAGGAGC.................................................	24	0	1	1.00	1	0	1	0	0	0	0	0
........................................................................................GGAGGATCAGCGTCAGCAGGA......................................................	21	0	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................CAGCGTCAGCAGGAGGAGC.................................................	19	0	1	1.00	1	0	0	1	0	0	0	0
....................................................................CTGGAGGAGGAGGAGGAGGTGGAGGAT....................................................................	27	1	2	0.50	1	0	0	0	1	0	0	0
..................................................................CGCAGGAGGAGGAGGAGGAGGTGGAG.......................................................................	26	1	3	0.33	1	0	0	0	1	0	0	0
......................................................................GGAGGAGGAGGAGGAGGT...........................................................................	18	0	20	0.10	2	2	0	0	0	0	0	0
..................................AACAACAACAACAGCGGTGG.............................................................................................................	20	1	10	0.10	1	0	0	1	0	0	0	0
......................................................................GGAGGAGGAGGAGGAGGTGGAGGA.....................................................................	24	0	11	0.09	1	1	0	0	0	0	0	0
...............................................................................................CAGCGTCAGCAGGAGGCGT.................................................	19	2	16	0.06	1	1	0	0	0	0	0	0
....................................................................GAGGAGGAGGTGGAGGTGGTGGAGGATC...................................................................	28	3	18	0.06	1	0	1	0	0	0	0	0
.................................................................TAGGAGGAGGAGGAGGAGGAGGTGGAG.......................................................................	27	1	19	0.05	1	0	0	0	1	0	0	0
.....................................................................AGGAGGAGGAGGAGGAGGT...........................................................................	19	0	20	0.05	1	1	0	0	0	0	0	0
...................................................................GCAGGAGGAGGAGGAGGAGG............................................................................	20	0	20	0.05	1	0	0	0	0	0	1	0
.......................................................................GAGGAGGAGGAGGAGGTGG.........................................................................	19	0	20	0.05	1	0	0	0	0	0	0	1
......................................................................GGAGGAGGAGGAGGAGGTGGAG.......................................................................	22	0	20	0.05	1	1	0	0	0	0	0	0
......................................................................GGAGGAGGAGGAGGAGGTGGA........................................................................	21	0	20	0.05	1	0	0	0	0	1	0	0
......................................................................GGAGGAGGGGGAGGAGGTGGAGG......................................................................	23	1	20	0.05	1	1	0	0	0	0	0	0

TCCTCGGTTGTTGTTGTTATTGTTGTCGTGGTCGTTGTTGTTGTTGTTGCCACCTCCGCCTCGTCATCGTCCTCCTCCTCCTCCTCCACCTCCTAGTCGCAGTCGTCCTCCTCGTTGGCGTGGCTAGAGGTGGGTTGGGGACCCTGACCCGGGGTACCCACCA ************************************************.............((.((.((...)).)).))...........********************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M040 female body	GSM343916 embryo	SRR902011 testis
..............TGTTATTTTAGTCGTGGTCGT................................................................................................................................	21	2	5	0.20	1	0	1	0
......................TTGTCGTGGACGTTGTTGT..........................................................................................................................	19	1	14	0.07	1	1	0	0
......................................................................CCTCCTCCTCCTCCTCCACCTCC......................................................................	23	0	19	0.05	1	0	0	1
......GTTGTTGTAGTTATTGTTGT.........................................................................................................................................	20	1	20	0.05	1	1	0	0
...........................GTGGTCGTTGTTGTTGTT......................................................................................................................	18	0	20	0.05	1	1	0	0
...............................................................................................................CAGTTGGGGTGGCTAGAG..................................	18	3	20	0.05	1	1	0	0

Species	Coordinate	ID	Alignment
dp5	XR_group6:11550875-11551037 +	dps_3152	AGGAGC---------------------------------CAACAACAACAATAACA---ACA---GC---ACC---AGCAACAACAA------------CAAC---AAC----------------------------------------------GGTGG--AGG------------------CGG---------------------AGC---A---GTAGC------------AG------GAGGAGGAGGAGGAGGTGGAGG------------------------------------------------AT---C----------------AGCGTC------AGCAGGAGGAGCAACCGCACCGA-------------------------TCTCCACCCAACCCCTGG--------------GACTGGGC--CCCA---TG--GGTGGT
droPer2	scaffold_20:1450661-1450829 +		AGGAGC---------------------------------CAACAACAACAATAACA---ACA---GC---ACC---AGCAACAACAA------------CAAC---AAC----------------------------------------------GGTGG--AGG------------------CGG---------------------AGC---A---GTAGC------------AGGAGGAGGAGGAGGAGGAGGAGGTGGAGG------------------------------------------------GT---C----------------AGCGTC------AGCAGGAGGAGCAACCGCACCGA-------------------------TCTCCACCCAACCCCTGG--------------GACTGGGC--CCCA---TG--GGTGGT
droWil2	scf2_1100000004558:1300394-1300547 +		A-CAGC-------------------------------------AACAACAACAACA---ACA---GC---AGC---AACAACAACAA------------CAAC---ACCGAGGACTAAAACGTTCAGGCAGCGATTGCTATGAGGATCATCATCA-AC-----------------AGCA---------------------------------------------------------------ACGAT---------------------------------------CAGCCGGCTCCGGTC---------------------------------------------------------------------------------------------TCTCCATGCAGG------------GCCTGG--ACAATTGT--GCTC---CT--GGCAGT
droVir3	scaffold_12758:932266-932424 -		CGGTGT---------------------------------CAGCA------GCAGCAACAACA---------AT---AACAACAGCAACATGTCCAACAACATT----------------------------------------------------GG-----CGCCAGCAG---------CAGCGT---------------------AGG---A---GGAGC------------------------------AGGAGGCGGC--------------------------------------------------GGCGG----------------------AG----------GAGGAGGAGGCG--GCGGCGGCGGTAGCAGTAAT-------GAGCGCGGCCTGCACCAT--------------------------GGCA---TTAGCATGGG
droMoj3	scaffold_6680:12733297-12733469 +		AGCAGCAGC----------------------------------A------ACAACAGCAGCAGCAACAGCACC---AACAACAACAA------------CAAC----------------------------------------------------AACA--------------A-----------------------------CAGCAGC---A---GCAGCAGCAGC---------------AGTTGCAGCAACAGCAGCAAC------------------------------------------------AA---C----------------AACAAC------AGCAGCAACAACAACAGCAACAA---------------T-TGCC----ACTGCAGCCACC------------GCCTGA--GCAAATGC--AGCATCAGCAGCACAAT
droGri2	scaffold_6458:657-822 +		AGCAGCAGC----------------------------------T------AAAACAGCAACAACAGC---AGC---AGCAGCTAAAA------CAG---CAGC----------------------------------------------------AGCA--------------G-----------------------------CAGCAGC---A---GCAGCAG------------------------------CAGCAGCAGCAG------------------------------------------CAGCTAAAACAAC-------------AACAACA------GCAGGATCAGCAG------CAA-------------------------ACTTCGCCACGG--CCTCAATGTGGCCCGGTGGATAATGC--ACCA---CG--GCTACT
droAna3	scaffold_13266:4348521-4348664 +		AACAACAAC----------------------------------A------ACAACAACAGCA---GC---------AGCGGCAACAG------------CGGC---GGA----------------------------------------------AGCGGTA--------GCGGTAGCGGCAGC--AGCTCAGGTGGCAGCAAC---AGT------------------------------------------------------------------------------------------------------AT-------------------------A------GGTAGCGGGAGCAACAACAGCAC--------------ATCCGCCGGTGGTG-CGCCAAGT------------------------------TCCC---AA--GGCGGC
droBip1	scf7180000396569:751322-751462 +		AACAACAAC----------------------------------A------GCGGCAACAACA---GC---AGC---AGCGGCAACAG------------CGACAGCGGC----------------------------------------------AACG--------------A-----------------------------CGGCAGC---A----------------------------------TGACAGGATCTTCG--------------------------------------------------GCCAATCTG----------------GATAATCATCGCAGCAGCGTGAGCAGCAATGA-------------------------TT-------------CGG--------------GGAAGAGC--AGTG---TC--GGCAGT
droKik1	scf7180000302592:1930844-1930990 +		AATAACAGC----------------------------------A------ATACCAATAGCA---------AT---AGCAACAGCAACAACACGAATG---------GA----------------------------------------------AACA--------------G-----------------------------CAGCAGT---A---GCAGCAG------------------------------CAACACCAATTC------------------------------------------CAACTCCAACAGC----------------AGCAATAGCAGCAGCAACAGGAATCTAAACAA-------------------------TC-----------CCG----------------GCCAG-----ACCC---TG--GTTACC
droFic1	scf7180000449733:402-551 -		AGCCGGAAC----------------------------------A------ACAACAACAGCAGCCGC---------AGCAGCAACAA------------CGGC---GGC----------------------------------------------AGCGACA--------G--------------------------------CAGC------AGTCGCAGCAA---C------AGATGCGCAAGCGTAAGGTCGGCACGGAAG------------------------------------------------GC---C----------------GACGGC------AACA---------------GCCA---------------G-------GGGCG-CT--------CCAG--------------CTACTGGC--GTCG---CCGTTAGTGT
droEle1	scf7180000491023:1668757-1668940 -		GGGAGCAGGTGGAGCAGCAGCAATGCTGACCACAGCATTCAACAGCAACAGCAACA---ACA---GC---AGCAACAGCAACAACAG------------CAAC----------------------------------------------------AG----------------------------------------------------C---A---GCAGCAA------------------------------CAGCT---AGAG---------------------------------------------------CAGC----------GGCAACATTG---GCCAAAGGAGCAGTCACTGGACCAA-------------------------ACATCACCAGGACGATG-------GGCTGG--GCAAATAT--TCTA---AG--GGGAGT
droRho1	scf7180000779985:1318018-1318155 -		CAACAA---------------------------------CAACA------ACAACA---ACA---GC---AGC---AGCAGCAGCAGCAGCCGCAGTA---------GC----------------------------------------------AGTGG--CGA-----------------------------------------CAGTAGCAGCAGCA---GCAGCGGATTG-----------------------------------------------------------------------------CGCAAACAGC-------------GGCGGCA---ACTGGCGAAAAAGAAACAAAAACAA-------------------------CCATTACCCACCCC---------------------------------------------
droBia1	scf7180000302088:28796-28958 -		AGCAACAAC----------------------------------A------ACAACAACAACAACAGC---AAC---AGCAGCAACAG------------CAAC---AGC----------------------------------------------AACA--------------G-----------------------------CAGCAGC---A---ACAACAG------------------------------CAGCAACAACAA------------------------------------------CAACAACAGC----------------AGCAGCA------GCAGCAGCAGCAGCAAGGACAA----------------ATACCGCAATCT-CAGCAAGTTCCTCA--------------AGTTAGA---TCCA---TG--AGTG-G
droTak1	scf7180000415872:208055-208203 -		AGGGCG---------------------------------TGGCG------AATCCGGTAGCG---------GG---AGGGGGAGGAGTAACGGGAGGA---------GC----------------------------------------------AGCA--------------G-----------------------------CAGGAGG---A---GGAGCAG------------------------------GAGCTGGAGGAGCAGTTATCCCCCAGCAGCAGCAACC-TC--------------------------------------------------TGCAGGGCTGCATTCATC-----------------------------------------------CGA--------------GCATCAGT--CCCA---TG--GGCGGT
droEug1	scf7180000409759:625231-625362 +		ACCC------------------------------------AGCAGCAGCAGCAGCA---ACA---GC---AGC---AGCAGCAGCAA------------CAAC--------------------------------------------------------------------------------------------------------AGCAGCAGCAGCA---GCACCAGGATC------------------AGGAA-----------------------------------------------------------TCCGC-------------GGCGGCC---ACTGCTGCA------------------------------------------GCCTACCAAAACTCTGG--------------ATACGGGCACTTCA---AC--AGCTAT
dm3	chr2R:3311961-3312102 +		CAAC---------------------------------------AACAACAATAACA---GCA---GC---ACC---AGCAATAACAA------------CAAC---AGC---------------------------ACTCTGGACATCATGGCGC-AC-----------------AACG---------------------------------------------------------------GCGGCGGAGCAGGCGGTGGC--------------------------------------CTCCATCTGAACAGCAGCAGC----------------AACGGCGGCGGCGGCGGCGGAGT------------------------------------------------------------------------------GG---TC--AGTGGT
droSim2	x:19213807-19213936 -		AAGCAG---------------------------------CAACA------ACAACA---CGA---CC---AAC---ACGAACGGCAGCAGCAACAACAACACG----------------------------------------------------AG-----CGGCAACAA--------------------------------C---AACAACAGCAGCG----------------------------------------------------------------------------------------------------------------------GC---AACAACAGCAACACGGAGCAGAACAC----------------ACCGCCCA-CGCCCGCCCAACTCCTG------------------------------------------
droSec2	scaffold_12:199157-199312 -		GGGCG-----------------------------------AACAGCAGCAGCAACA---GCA---GC---AGC---AGCAGCAGCAACAA---------CAGC---AGC----------------------------------------------AGCAGCA--------G--------------------------------C---AGC---A---GTTGC------------AG------------------CAGCAACAGGAG------------------------------------------C---AACATCAT-TTGAGCCTGCAGCAACATCA------GCAGTACCAGCAGCATCACCCT---------------G-------CTGCA-CT--------CCG-------CC-------CG----------A---T---TTGGCC
droYak3	X:16057007-16057152 -		AACAGCAGC----------------------------------A------ACAACAACAACA---GC---AAC---AACAGCAACAG------------CAACAACAG----------------------------------------------------C----------------------------------------------------A---GCAGC------------AATTGGAGGCGGTGCACGGGGGCGTGGCTAAGCAGTG-----CCTGCAGTTTCCACC-AC----------------------------------------------------------------CACCGGACTAT-------------------------CCACCACC-------------------------CACCAGC--ACCA---CC--GGTGGT
droEre2	scaffold_4784:16264100-16264252 +		CAAC---------------------------------------AACAACAACAACA---ACA---GC---AGC---AGCAGCAACAG------------CAAC---AAT----------------------------------------------CATGGCA--------GTGGCAACCACGGC---------------------------------------------------------GGCGGAGGAGGAGGAGCTGGC--------------------------------------------------TCCGG----------------------CG----------GCGGAGTAGCCG--GCGAC------------------------TGTGCCACCAAG--CTGGAGTACGCCCTCATGGGCGG--------A---CA--GCCGCT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

dp5

AGGAGC---------------------------------CAACAACAACAATAACA---ACA---GC---ACC---AGCAACAACAA------------CAAC---AAC----------------------------------------------GGTGG--AGG------------------CGG---------------------AGC---A---GTAGC------------AG------GAGGAGGAGGAGGAGGTGGAGG------------------------------------------------AT---C----------------AGCGTC------AGCAGGAGGAGCAACCGCACCGA-------------------------TCTCCACCCAACCCCTGG--------------GACTGGGC--CCCA---TG--GGTGGT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.............................................................................................................................................................................................................................................................................................................................................................AGGAGGAGCAACCGCACCGA-------------------------TCTC.......................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..........................................................................................................AAC----------------------------------------------GGTGG--AGG------------------CGG---------------------AGC---A---............................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................CACCGA-------------------------TCTCCACCCAACCCCTGG--------------G..........................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................AACAA------------CAAC---AAC----------------------------------------------GGTGG--AGG------------------CGG---------------------AGC---................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0
....................................................................................CAA------------CAAC---AAC----------------------------------------------GGTGG--AGG------------------C.............................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................GTC------AGCAGGAGGAGCAACC...........................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................G------------------------------------------------AT---C----------------AGCGTC------AGCAGGAGGAG................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................CCGA-------------------------TCTCCACCCAACCCCTGG--------------G..........................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................GCGTC------AGCAGGAGGAGCAACCG..........................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................AGG------------------------------------------------AT---C----------------AGCGTC------AGCAGGAGGAGC...............................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................GGAGG------------------------------------------------AT---C----------------AGCGTC------AGCAGGA....................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................C----------------AGCGTC------AGCAGGAGGAGC...............................................................................................	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...........................................................................................................................................................................................................................................G------GAGGAGGAGGAGGAGGT..................................................................................................................................................................................................	18	20	0.10	2	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................G------GAGGAGGAGGAGGAGGTGGAGG------------------------------------------------A............................................................................................................................................	24	11	0.09	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................AG------GAGGAGGAGGAGGAGGT..................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................GC------------AG------GAGGAGGAGGAGGAGG...................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................................GAGGAGGAGGAGGAGGTGG................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	1	0	0	0
...........................................................................................................................................................................................................................................G------GAGGAGGAGGAGGAGGTGGAG..............................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................G------GAGGAGGAGGAGGAGGTGGA...............................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	1	0	0

droPer2

AGGAGC---------------------------------CAACAACAACAATAACA---ACA---GC---ACC---AGCAACAACAA------------CAAC---AAC----------------------------------------------GGTGG--AGG------------------CGG---------------------AGC---A---GTAGC------------AGGAGGAGGAGGAGGAGGAGGAGGTGGAGG------------------------------------------------GT---C----------------AGCGTC------AGCAGGAGGAGCAACCGCACCGA-------------------------TCTCCACCCAACCCCTGG--------------GACTGGGC--CCCA---TG--GGTGGT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.................................................................................................................................................................................................................................................GGAGGAGGAGGAGGAGGTGGAGG------------------------------------------------G............................................................................................................................................	24	1	2.00	2	0	1	0	0	0	1
....................................................................................................................................................................................................................................................GGAGGAGGAGGAGGTGGAGG------------------------------------------------GT---........................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................GAGG------------------------------------------------GT---C----------------AGCGTC------AGCAGGA....................................................................................................	20	1	1.00	1	0	0	0	0	0	1
........................................AACAACAACAATAACA---ACA---GC---ACC---AG.......................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................CCACCCAACCCCTGG--------------GACTGG.....................	21	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................GGAGGAGGAGGAGGAGGTGGAGG------------------------------------------------GT---........................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
............................................................................................................................................................................................................................................GAGGAGGAGGAGGAGGAGGAGGTGGAG..............................................................................................................................................................................................	27	9	0.44	4	0	0	0	0	0	4
...............................................................................................................................................................................................................................................GAGGAGGAGGAGGAGGAGGTGGAG..............................................................................................................................................................................................	24	16	0.19	3	0	0	0	0	0	3
.............................................................................................................................................................................................................................C------------AGGAGGAGGAGGAGGAGGAGGAG....................................................................................................................................................................................................	24	20	0.15	3	0	0	0	0	0	3
...........................................................................................................................................................................................................................................GGAGGAGGAGGAGGAGGAGGAGGT..................................................................................................................................................................................................	24	20	0.10	2	0	0	0	0	0	2
.............................................................................................................................................................................................................................................AGGAGGAGGAGGAGGAGGAGGTGGAG..............................................................................................................................................................................................	26	11	0.09	1	0	0	0	0	0	1
...............................................................................................................................................................................................................................................GAGGAGGAGGAGGAGGAGGTGGA...............................................................................................................................................................................................	23	19	0.05	1	0	0	0	0	0	1
............................................................................................................................................................................................................................GC------------AGGAGGAGGAGGAGGA...........................................................................................................................................................................................................	18	20	0.05	1	0	0	0	1	0	0
............................................................................................................................................................................................................................GC------------AGGAGGAGGAGGAGGAGG.........................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0	0
............................................................................................................................................................................................................................................GAGGAGGAGGAGGAGGAGGAGGTG.................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	1

droWil2

A-CAGC-------------------------------------AACAACAACAACA---ACA---GC---AGC---AACAACAACAA------------CAAC---ACCGAGGACTAAAACGTTCAGGCAGCGATTGCTATGAGGATCATCATCA-AC-----------------AGCA---------------------------------------------------------------ACGAT---------------------------------------CAGCCGGCTCCGGTC---------------------------------------------------------------------------------------------TCTCCATGCAGG------------GCCTGG--ACAATTGT--GCTC---CT--GGCAGT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
....................................................................................CAA------------CAAC---ACCGAGGACTA................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	2	0	0	0	0
................................................................................................................................................................................GCA---------------------------------------------------------------ACGAT---------------------------------------CAGCCGGCTCCGGTC---------------------------------------------------------------------------------------------T..........................................................	24	1	1.00	1	0	0	0	1	0
..................................................................................................................................................................................A---------------------------------------------------------------ACGAT---------------------------------------CAGCCGGCTCCGGTC---------------------------------------------------------------------------------------------...........................................................	21	1	1.00	1	0	0	0	1	0
..................................................................................................................CTAAAACGTTCAGGCAGC.................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................AGG------------GCCTGG--ACAATTGT--GCTC---CT--......	23	1	1.00	1	0	1	0	0	0
.............................................CAACAACAACA---ACA---GC---AGC---.........................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.40	8	0	0	0	8	0
...........................................AACAACAACAACA---ACA---GC---AGC---.........................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.20	4	0	0	0	4	0
......................................................CA---ACA---GC---AGC---AACAACAACA...............................................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	2	0
...............................................ACAACAACA---ACA---GC---AGC---AACAAC...................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	0	0	2	0
.................................................AACAACA---ACA---GC---AGC---AACAACAACA...............................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
...............................................ACAACAACA---ACA---GC---AGC---AACA.....................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0
..................................................ACAACA---ACA---GC---AGC---AACAACA..................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
..............................................AACAACAACA---ACA---GC---AGC---AACAAC...................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
.................................................AACAACA---ACA---GC---AGC---AACAACAAC................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
..CAGC-------------------------------------AACAACAACAACA---ACA---GC---A..............................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	1	0	0
...............................................ACAACAACA---ACA---GC---AGC---AAC......................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0

droVir3

CGGTGT---------------------------------CAGCA------GCAGCAACAACA---------AT---AACAACAGCAACATGTCCAACAACATT----------------------------------------------------GG-----CGCCAGCAG---------CAGCGT---------------------AGG---A---GGAGC------------------------------AGGAGGCGGC--------------------------------------------------GGCGG----------------------AG----------GAGGAGGAGGCG--GCGGCGGCGGTAGCAGTAAT-------GAGCGCGGCCTGCACCAT--------------------------GGCA---TTAGCATGGG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.....................................................................................................................................................................CAGCAG---------CAGCGT---------------------AGG---A---GGAGC------------------------------.........................................................................................................................................................................................................	21	1	3.00	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
............................................................................................................................................................................................................................................................AGGAGGCGGC--------------------------------------------------GGCGG----------------------AG----------GAGGAGGAG.............................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................CAGCAG---------CAGCGT---------------------AGG---A---GGAGC------------------------------AGGA.....................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................AACATT----------------------------------------------------GG-----CGCCAGCAG---------CAG..............................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................CATGTCCAACAACATT----------------------------------------------------GG-----CGCCAGC............................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................G---------CAGCGT---------------------AGG---A---GGAGC------------------------------AGG......................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................GGCGGTAGCAGTAAT-------GAGCGCGGC....................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..................................................GCAGCAACAACA---------AT---AACAACAGCAAC.............................................................................................................................................................................................................................................................................................................................................................................	26	3	1.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................ACATGTCCAACAACATT----------------------------------------------------GG-----CG.................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................GCAG---------CAGCGT---------------------AGG---A---GGAGC------------------------------AG.......................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................TGCACCAT--------------------------GGCA---TTAGCAT...	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................GT---------------------AGG---A---GGAGC------------------------------AGGAGGCGGC--------------------------------------------------.............................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................AGTAAT-------GAGCGCGGCCTGCT...............................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
................................................................................................CAACATT----------------------------------------------------GG-----CGCCAGCAG---------CAG..............................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................A------GCAGCAACAACA---------AT---AACAACAGCAACA............................................................................................................................................................................................................................................................................................................................................................................	28	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................GGCGG----------------------AG----------GAGGAGGAGGCG--GCGGCGGAC...............................................................................	28	3	0.33	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................A------GCAGCAACAACA---------AT---AACAACAGCAA..............................................................................................................................................................................................................................................................................................................................................................................	26	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................CA------GCAGCAACAACA---------AT---AACAACAGC................................................................................................................................................................................................................................................................................................................................................................................	25	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GCAGCAACAACA---------AT---AACAACAGCA...............................................................................................................................................................................................................................................................................................................................................................................	24	5	0.20	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................GGAGGAGGCG--GCGGCGGC................................................................................	18	12	0.17	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................AG----------GAGGAGGAGGCG--GCGGC...................................................................................	19	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................GAGGAGGAGGCG--GCGGCGGCG...............................................................................	21	7	0.14	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................AGCAACAACA---------AT---AACAACAGC................................................................................................................................................................................................................................................................................................................................................................................	21	18	0.11	2	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................AACAACA---------AT---AACAACAGCAACA............................................................................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................G----------------------AG----------GAGGAGGAGGCG--GCGG....................................................................................	19	10	0.10	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................GG----------------------AG----------GAGGAGGAGGCG--GCG.....................................................................................	19	11	0.09	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................AGCAACAACA---------AT---AACAACAGCAACA............................................................................................................................................................................................................................................................................................................................................................................	25	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................GCAACAACA---------AT---AACAACAGCAAC.............................................................................................................................................................................................................................................................................................................................................................................	23	12	0.08	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................G----------GAGGAGGAGGCG--GCGGC...................................................................................	18	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................GG----------------------AG----------GAGGAGGAGGCG--GC......................................................................................	18	15	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.....................................................GCAACAACA---------AT---AACAACAGCA...............................................................................................................................................................................................................................................................................................................................................................................	21	17	0.06	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................A------GCAGCAACAACA---------AT---AACAAC...................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................GCA------GCAGCAACAACA---------AT---AACAA....................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................CAACAACA---------AT---AACAACAGC................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................ACAACA---------AT---AACAACAGCAAC.............................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................CAACAACA---------AT---AACAACAGCAACA............................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................AGCAACAACA---------AT---AACAACAG.................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................CAGCAACAACA---------AT---AACAACA..................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................GCAACAACA---------AT---AACAACAGC................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AGCAGCAGC----------------------------------A------ACAACAGCAGCAGCAACAGCACC---AACAACAACAA------------CAAC----------------------------------------------------AACA--------------A-----------------------------CAGCAGC---A---GCAGCAGCAGC---------------AGTTGCAGCAACAGCAGCAAC------------------------------------------------AA---C----------------AACAAC------AGCAGCAACAACAACAGCAACAA---------------T-TGCC----ACTGCAGCCACC------------GCCTGA--GCAAATGC--AGCATCAGCAGCACAAT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.............................................................................................................................................................................................................................................................................................................................................................................ACAA---------------T-TGCC----ACTGCAGCCACC------------...................................	21	1	1.00	1	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................A---------------T-TGCC----ACTGCAGCCACC------------GCC................................	21	1	1.00	1	1	0	0	0	0	0
.......GC----------------------------------A------ACAACAGCAGCAGCAACAGCACC---AAC......................................................................................................................................................................................................................................................................................................................................................................................	29	2	0.50	1	0	0	0	0	1	0
...................................................................................................CAAC----------------------------------------------------AACA--------------A-----------------------------CAGCAGC---A---GCAGC.......................................................................................................................................................................................................................................	22	20	0.15	3	3	0	0	0	0	0
.....................................................ACAGCAGCAGCAACAGCACC---.........................................................................................................................................................................................................................................................................................................................................................................................	20	9	0.11	1	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................GCAAC------------------------------------------------AA---C----------------AACAAC------AGCAGCAAC..................................................................................................	23	20	0.10	2	2	0	0	0	0	0
...AGCAGC----------------------------------A------ACAACAGCAGCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	2	0	0	0	0	0
...........................................................................................................................................................AACA--------------A-----------------------------CAGCAGC---A---GCAGCAG.....................................................................................................................................................................................................................................	20	20	0.10	2	2	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................AA---C----------------AACAAC------AGCAGCAACAACAACAGCA........................................................................................	28	20	0.05	1	0	0	0	0	1	0
...AGCAGC----------------------------------A------ACAACAGCAGCAGCAACAGC...............................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................AGCAACAGCAGCAAC------------------------------------------------AA---C----------------AACAAC------AGCA.......................................................................................................	28	20	0.05	1	1	0	0	0	0	0
......AGC----------------------------------A------ACAACAGCAGCAGCAACAGC...............................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................ACAAC------AGCAGCAACAACAAC............................................................................................	20	20	0.05	1	1	0	0	0	0	0
...................................................CAACAGCAGCAGCAACAGCA..............................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................GCAGCAACAACAACAGCAAC......................................................................................	20	20	0.05	1	1	0	0	0	0	0
..................................................................................AACAA------------CAAC----------------------------------------------------AACA--------------A-----------------------------CAGCAGC---................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
......................................................................................................C----------------------------------------------------AACA--------------A-----------------------------CAGCAGC---A---GCAGCAGCA...................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	1
........................................................................................................................................................................................................................................................................................................................AA---C----------------AACAAC------AGCAGCAACAA................................................................................................	20	20	0.05	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................AGCAAC------------------------------------------------AA---C----------------AACAAC------AGCAGCAACAACA..............................................................................................	28	20	0.05	1	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................ACAAC------AGCAGCAACAACAACAGC.........................................................................................	23	20	0.05	1	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................................C------------------------------------------------AA---C----------------AACAAC------AGCAGCAACAACA..............................................................................................	23	20	0.05	1	1	0	0	0	0	0
.................................................................................CAACAA------------CAAC----------------------------------------------------AACA--------------A-----------------------------CAGCAGC---A---GC..........................................................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................AC------AGCAGCAACAACAACA...........................................................................................	18	20	0.05	1	0	0	0	0	1	0
AGCAGCAGC----------------------------------A------ACAACAGCAGCAGCAA...................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	1	0
......................................................CAGCAGCAGCAACAGCACC---.........................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	1	0
.......................................................AGCAGCAGCAACAGCACC---.........................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	1	0

droGri2

AGCAGCAGC----------------------------------T------AAAACAGCAACAACAGC---AGC---AGCAGCTAAAA------CAG---CAGC----------------------------------------------------AGCA--------------G-----------------------------CAGCAGC---A---GCAGCAG------------------------------CAGCAGCAGCAG------------------------------------------CAGCTAAAACAAC-------------AACAACA------GCAGGATCAGCAG------CAA-------------------------ACTTCGCCACGG--CCTCAATGTGGCCCGGTGGATAATGC--ACCA---CG--GCTACT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
...........................................................................................................................................................................................................................................................................................................................................................................................................................CAATGTGGCCCGGTGGATAATGC--AC...............	25	20	0.10	2	2	0
...............................................................................................................................................................................................................................................................................................................................................................GATCAGCAG------CAA-------------------------ACTTCGCCACGG--CC...........................................	26	14	0.07	1	1	0
...............................................................................................................................................................................................................................................................................................................................AC-------------AACAACA------GCAGGATCA.................................................................................................	18	20	0.05	1	1	0
............................................................................................................................................................................................................................................................................................................................ACAAC-------------AACAACA------GCAGGATCAGCA..............................................................................................	24	20	0.05	1	0	1
.....................................................................................................GC----------------------------------------------------AGCA--------------G-----------------------------CAGCAGC---A---GCAGCAG------------------------------.......................................................................................................................................................................................................	22	20	0.05	1	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................TCAATGTGGCCCGGTGGATAATG....................	23	20	0.05	1	0	1
..........................................................................................................................................................................................................................................................................................................................................................................................................................TCAATGTGGCCCGGTGGATAATGC--.................	24	20	0.05	1	0	1

droAna3

AACAACAAC----------------------------------A------ACAACAACAGCA---GC---------AGCGGCAACAG------------CGGC---GGA----------------------------------------------AGCGGTA--------GCGGTAGCGGCAGC--AGCTCAGGTGGCAGCAAC---AGT------------------------------------------------------------------------------------------------------AT-------------------------A------GGTAGCGGGAGCAACAACAGCAC--------------ATCCGCCGGTGGTG-CGCCAAGT------------------------------TCCC---AA--GGCGGC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
....................................................................................CAG------------CGGC---GGA----------------------------------------------AGCGGTA--------GCGGTAG....................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
..................................................................................AACAG------------CGGC---GGA----------------------------------------------AGCGGTA--------GCGGTAGC...................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
............................................................CA---GC---------AGCGGCAACAG------------CGGC---GG.........................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................GCAACAACAGCAC--------------ATCCGC................................................................	19	1	1.00	1	0	1	0	0	0	0
....................................................................................................GGC---GGA----------------------------------------------AGCGGTA--------GCGGTAGC...................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0
...........................................................GCA---GC---------AGCGGCAACAG------------CG................................................................................................................................................................................................................................................................................................................................................................	18	3	0.33	1	1	0	0	0	0	0
......AAC----------------------------------A------ACAACAACAGCA---GC---------AGC......................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.15	3	0	3	0	0	0	0
.....CAAC----------------------------------A------ACAACAACAGCA---GC---------.........................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.10	2	0	2	0	0	0	0
...AACAAC----------------------------------A------ACAACAACAGCA---GC---------A........................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	0	0	2
AACAACAAC----------------------------------A------ACAACAACAGCA---GC---------AGC......................................................................................................................................................................................................................................................................................................................................................................................	27	19	0.05	1	0	1	0	0	0	0
...AACAAC----------------------------------A------ACAACAACAGCA---GC---------AGC......................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
...AACAAC----------------------------------A------ACAACAACAGCA---GC---------.........................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
....ACAAC----------------------------------A------ACAACAACAGCA---GC---------AGC......................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	1

droBip1

AACAACAAC----------------------------------A------GCGGCAACAACA---GC---AGC---AGCGGCAACAG------------CGACAGCGGC----------------------------------------------AACG--------------A-----------------------------CGGCAGC---A----------------------------------TGACAGGATCTTCG--------------------------------------------------GCCAATCTG----------------GATAATCATCGCAGCAGCGTGAGCAGCAATGA-------------------------TT-------------CGG--------------GGAAGAGC--AGTG---TC--GGCAGT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AATAACAGC----------------------------------A------ATACCAATAGCA---------AT---AGCAACAGCAACAACACGAATG---------GA----------------------------------------------AACA--------------G-----------------------------CAGCAGT---A---GCAGCAG------------------------------CAACACCAATTC------------------------------------------CAACTCCAACAGC----------------AGCAATAGCAGCAGCAACAGGAATCTAAACAA-------------------------TC-----------CCG----------------GCCAG-----ACCC---TG--GTTACC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AGCCGGAAC----------------------------------A------ACAACAACAGCAGCCGC---------AGCAGCAACAA------------CGGC---GGC----------------------------------------------AGCGACA--------G--------------------------------CAGC------AGTCGCAGCAA---C------AGATGCGCAAGCGTAAGGTCGGCACGGAAG------------------------------------------------GC---C----------------GACGGC------AACA---------------GCCA---------------G-------GGGCG-CT--------CCAG--------------CTACTGGC--GTCG---CCGTTAGTGT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GGGAGCAGGTGGAGCAGCAGCAATGCTGACCACAGCATTCAACAGCAACAGCAACA---ACA---GC---AGCAACAGCAACAACAG------------CAAC----------------------------------------------------AG----------------------------------------------------C---A---GCAGCAA------------------------------CAGCT---AGAG---------------------------------------------------CAGC----------GGCAACATTG---GCCAAAGGAGCAGTCACTGGACCAA-------------------------ACATCACCAGGACGATG-------GGCTGG--GCAAATAT--TCTA---AG--GGGAGT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CAACAA---------------------------------CAACA------ACAACA---ACA---GC---AGC---AGCAGCAGCAGCAGCCGCAGTA---------GC----------------------------------------------AGTGG--CGA-----------------------------------------CAGTAGCAGCAGCA---GCAGCGGATTG-----------------------------------------------------------------------------CGCAAACAGC-------------GGCGGCA---ACTGGCGAAAAAGAAACAAAAACAA-------------------------CCATTACCCACCCC---------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AGCAACAAC----------------------------------A------ACAACAACAACAACAGC---AAC---AGCAGCAACAG------------CAAC---AGC----------------------------------------------AACA--------------G-----------------------------CAGCAGC---A---ACAACAG------------------------------CAGCAACAACAA------------------------------------------CAACAACAGC----------------AGCAGCA------GCAGCAGCAGCAGCAAGGACAA----------------ATACCGCAATCT-CAGCAAGTTCCTCA--------------AGTTAGA---TCCA---TG--AGTG-G	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AGGGCG---------------------------------TGGCG------AATCCGGTAGCG---------GG---AGGGGGAGGAGTAACGGGAGGA---------GC----------------------------------------------AGCA--------------G-----------------------------CAGGAGG---A---GGAGCAG------------------------------GAGCTGGAGGAGCAGTTATCCCCCAGCAGCAGCAACC-TC--------------------------------------------------TGCAGGGCTGCATTCATC-----------------------------------------------CGA--------------GCATCAGT--CCCA---TG--GGCGGT	Size	Hit Count	Total Norm	Total
No Reads

droEug1

ACCC------------------------------------AGCAGCAGCAGCAGCA---ACA---GC---AGC---AGCAGCAGCAA------------CAAC--------------------------------------------------------------------------------------------------------AGCAGCAGCAGCA---GCACCAGGATC------------------AGGAA-----------------------------------------------------------TCCGC-------------GGCGGCC---ACTGCTGCA------------------------------------------GCCTACCAAAACTCTGG--------------ATACGGGCACTTCA---AC--AGCTAT	Size	Hit Count	Total Norm	Total
No Reads

dm3

CAAC---------------------------------------AACAACAATAACA---GCA---GC---ACC---AGCAATAACAA------------CAAC---AGC---------------------------ACTCTGGACATCATGGCGC-AC-----------------AACG---------------------------------------------------------------GCGGCGGAGCAGGCGGTGGC--------------------------------------CTCCATCTGAACAGCAGCAGC----------------AACGGCGGCGGCGGCGGCGGAGT------------------------------------------------------------------------------GG---TC--AGTGGT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...........................................................................................................................................................................................................................................................................................................................AGCAGC----------------AACGGCGGCGGCG.......................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
CAAC---------------------------------------AACAACAATAACA---GCA---GC---...............................................................................................................................................................................................................................................................................................................................................................................................	22	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................TCTGGACATCATGGCGC-AC-----------------AACG---------------------------------------------------------------G..................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................ATAACA---GCA---GC---ACC---AGCAATA..................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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CAAC---------------------------------------AACAACAATAACA---G.........................................................................................................................................................................................................................................................................................................................................................................................................	18	13	0.15	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.AAC---------------------------------------AACAACAATAACA---GCA---....................................................................................................................................................................................................................................................................................................................................................................................................	19	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..AC---------------------------------------AACAACAATAACA---GCA---....................................................................................................................................................................................................................................................................................................................................................................................................	18	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................CAACAATAACA---GCA---GC---A..............................................................................................................................................................................................................................................................................................................................................................................................	17	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................CGGCGGCGGCGGCGGAG..............................................................................................	17	13	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

AAGCAG---------------------------------CAACA------ACAACA---CGA---CC---AAC---ACGAACGGCAGCAGCAACAACAACACG----------------------------------------------------AG-----CGGCAACAA--------------------------------C---AACAACAGCAGCG----------------------------------------------------------------------------------------------------------------------GC---AACAACAGCAACACGGAGCAGAACAC----------------ACCGCCCA-CGCCCGCCCAACTCCTG------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.....................................................................................AGCAGCAACAACAACACG----------------------------------------------------..........................................................................................................................................................................................................................................................................................................	18	3	1.00	3	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0
.AGCAG---------------------------------CAACA------ACAACA---CG........................................................................................................................................................................................................................................................................................................................................................................................................	18	3	1.00	3	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................CAGCAACACGGAGCA..........................................................................................	15	3	0.33	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................AACAGCAGCG----------------------------------------------------------------------------------------------------------------------GC---AACAAC........................................................................................................	18	7	0.14	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

GGGCG-----------------------------------AACAGCAGCAGCAACA---GCA---GC---AGC---AGCAGCAGCAACAA---------CAGC---AGC----------------------------------------------AGCAGCA--------G--------------------------------C---AGC---A---GTTGC------------AG------------------CAGCAACAGGAG------------------------------------------C---AACATCAT-TTGAGCCTGCAGCAACATCA------GCAGTACCAGCAGCATCACCCT---------------G-------CTGCA-CT--------CCG-------CC-------CG----------A---T---TTGGCC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.....................................................................................................................................................................................................................................................................AGGAG------------------------------------------C---AACATCAT-TTGAGCCTG...........................................................................................................................	23	1	1.00	1	0	0	1	0
...................................................................................GCAACAA---------CAGC---AGC----------------------------------------------AGCAGC....................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	2	0
..........................................................................................................................................................................G--------------------------------C---AGC---A---GTTGC------------AG------------------CAGCA..................................................................................................................................................................................................	18	12	0.08	1	1	0	0	0
...................................................................................................CAGC---AGC----------------------------------------------AGCAGCA--------G--------------------------------C---AGC---A---GT..........................................................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0
.....................................................................................AACAA---------CAGC---AGC----------------------------------------------AGCAGCA--------G--------------------------------C---AGC---A---............................................................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0
............................................................................AGCAGCAGCAACAA---------CAGC---AGC----------------------------------------------A.........................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0
.....................................................................................AACAA---------CAGC---AGC----------------------------------------------AGCAGCA--------...........................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0
....................................................................................CAACAA---------CAGC---AGC----------------------------------------------AGCAGCA--------...........................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0

droYak3

AACAGCAGC----------------------------------A------ACAACAACAACA---GC---AAC---AACAGCAACAG------------CAACAACAG----------------------------------------------------C----------------------------------------------------A---GCAGC------------AATTGGAGGCGGTGCACGGGGGCGTGGCTAAGCAGTG-----CCTGCAGTTTCCACC-AC----------------------------------------------------------------CACCGGACTAT-------------------------CCACCACC-------------------------CACCAGC--ACCA---CC--GGTGGT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...................................................................................ACAG------------CAACAACAG----------------------------------------------------C----------------------------------------------------A---GCAGC------------...........................................................................................................................................................................................................................	20	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
.............................................................A---GC---AAC---AACAGCAACAG------------CAACA.............................................................................................................................................................................................................................................................................................................................................................	22	11	0.09	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................C---AAC---AACAGCAACAG------------CAACAA............................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
AACAGCAGC----------------------------------A------ACAACAACAACA---....................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

CAAC---------------------------------------AACAACAACAACA---ACA---GC---AGC---AGCAGCAACAG------------CAAC---AAT----------------------------------------------CATGGCA--------GTGGCAACCACGGC---------------------------------------------------------GGCGGAGGAGGAGGAGCTGGC--------------------------------------------------TCCGG----------------------CG----------GCGGAGTAGCCG--GCGAC------------------------TGTGCCACCAAG--CTGGAGTACGCCCTCATGGGCGG--------A---CA--GCCGCT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..............................................AACAACAACA---ACA---GC---AGC---AGC......................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.15	3	0	1	0	0	1	1	0
......................................................CA---ACA---GC---AGC---AGCAGCAACAG------------C.................................................................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	1	0	1	0	0	0
..............................................AACAACAACA---ACA---GC---AGC---.........................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.10	2	2	0	0	0	0	0	0
....................................................AACA---ACA---GC---AGC---AGCAGCAACA...............................................................................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	0	0	2	0
.....................................................ACA---ACA---GC---AGC---AGCAGCAACAG------------C.................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0	0
......................................................................AGC---AGCAGCAACAG------------CAAC---AA.........................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0	0	0
....................................................AACA---ACA---GC---AGC---AGCAGCA..................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	1	0
.................................................AACAACA---ACA---GC---AGC---AGC......................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0
......................................................CA---ACA---GC---AGC---AGCAGCAAC................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	1	0
..................................................ACAACA---ACA---GC---AGC---AGCAGC...................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0	0
.................................................AACAACA---ACA---GC---AGC---AGCAGCAA.................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	1	0
...........................................AACAACAACAACA---ACA---GC---AGC---A........................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	1	0	0	0
...................................................CAACA---ACA---GC---AGC---AGCAGC...................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	1	0
.............................................CAACAACAACA---ACA---GC---AGC---.........................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0	0
.................................................AACAACA---ACA---GC---AGC---AGCAG....................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0	0

dps_3152

XR_group6:11550925-11550987 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads