dps_3142

intron [Dpse\GA11206-in]; exon [dpse_GLEANR_12166:6]; CDS [Dpse\GA11206-cds]; intron [Dpse\GA11206-in]; exon [dpse_GLEANR_12166:5]; CDS [Dpse\GA11206-cds]; intron [Dpse\GA11206-in]

------############################################---------------------------------------------------------------------------------------------------------------------------##################-------------------------------- TTGCAGGTATTTCATCAAGGTGGCTCGCTCCCAAGACGAGCCAGGCAAGGGCTCTTTCTGGCGCATCGATCCGGACAGCGGGGCCAAGCTGATTGATCACAGCTACAAGAAGCGTCGCCAGCGCAGCAGCCAGGGCTTTCGTCCGCCCTATGGCATGCCCCGTTCGGCGCCCGTTTCCCCGAGTCACATGGGTATGTGGATGGATTGTGTGCGTTAATCGCTA *******************************************************************************.((...((((..((((....(((......))))))).))))...)).((((((((........))))..))))..*****************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M040 female body	M059 embryo	V112 male body	GSM444067 head
..................................................................................................................................CAGGGCTTTCGTCCGCCCTATGGCAT...................................................................	26	0	1	1.00	1	1	0	0	0
....................................CGAGCCAGGCAAGGGCTCTTTCTGGCGC...............................................................................................................................................................	28	0	1	1.00	1	0	1	0	0
.................................................................................GGCCAAGCTGATTGATCACAG.........................................................................................................................	21	0	1	1.00	1	1	0	0	0
.....................................................CTTTCTGGCGCATCGATCCGGACAGCGG..............................................................................................................................................	28	0	1	1.00	1	1	0	0	0
...............................................................................................................................................................................................GTATGTGGATGGATTGTGTGCGTT........	24	0	1	1.00	1	0	0	1	0
.........................................................CTGGCGCATCGATCCGGACAGCGGG.............................................................................................................................................	25	0	1	1.00	1	0	0	1	0
..........................................................................................GATTGATCACAGCTACAAG..................................................................................................................	19	0	1	1.00	1	1	0	0	0
...............................................AGGGCTCTTTCTGGCGCATCG...........................................................................................................................................................	21	0	1	1.00	1	1	0	0	0
..................................................................................GCCAAGCTGATTGATCACAG.........................................................................................................................	20	0	1	1.00	1	1	0	0	0
.........................................................................................................................................................CATGCCCCGTTCGGCGCCCGTTT...............................................	23	0	1	1.00	1	1	0	0	0
..............................................AGGGGCTCTTTCTGGCGCATC............................................................................................................................................................	21	1	1	1.00	1	1	0	0	0
....................TGGCTCGCTCCCAAGACGAGC......................................................................................................................................................................................	21	0	1	1.00	1	0	1	0	0
...................................................................GATCCGGACAGCGGGGCCAAGC......................................................................................................................................	22	0	1	1.00	1	1	0	0	0
..................................................................................................ACAGCTACAAGAAGCGTCGCCAGCGCAGC................................................................................................	29	0	1	1.00	1	0	0	1	0
..............................................................................................................AGCGTCGCCAGCGCAGCAGCCAG..........................................................................................	23	0	1	1.00	1	1	0	0	0
...........................................................................................................AGAAGCGTCGCCAGCGCAGCAGCCA...........................................................................................	25	0	1	1.00	1	1	0	0	0
..............................................................................................GATCACAGCTGCAAGAGGCG.............................................................................................................	20	2	1	1.00	1	1	0	0	0
.....................................................................................................GCTACAAGAAGCGTCGCCAGCGCAGC................................................................................................	26	0	1	1.00	1	0	1	0	0
..................................................................CGATCCGGACAGCGGGGCC..........................................................................................................................................	19	0	1	1.00	1	1	0	0	0
...............................................................CATCGATCCGGACAGCGGGGC...........................................................................................................................................	21	0	1	1.00	1	1	0	0	0
.............................................................................................................AAGCGTCGCCAGCGCAGCAGCC............................................................................................	22	0	1	1.00	1	1	0	0	0
...........................................................................................................................................................................................ATGTGTATGTGTATGGATTGT...............	21	2	4	0.25	1	1	0	0	0
...................................................................................................................CGCCAGCGCAGCTACCACGGC.......................................................................................	21	3	6	0.17	1	0	0	0	1

AACGTCCATAAAGTAGTTCCACCGAGCGAGGGTTCTGCTCGGTCCGTTCCCGAGAAAGACCGCGTAGCTAGGCCTGTCGCCCCGGTTCGACTAACTAGTGTCGATGTTCTTCGCAGCGGTCGCGTCGTCGGTCCCGAAAGCAGGCGGGATACCGTACGGGGCAAGCCGCGGGCAAAGGGGCTCAGTGTACCCATACACCTACCTAACACACGCAATTAGCGAT *****************************************************************.((...((((..((((....(((......))))))).))))...)).((((((((........))))..))))..*******************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M040 female body
...........................................................................................................................................GCAGGCGGGGTACCGTACGGG...............................................................	21	1	1	1.00	1	1
.....................................................................................................................................................................CCGCGGGCAAAGGGGCTCAG......................................	20	0	1	1.00	1	1
..............................................................................................................TGGCAGCGGTCGCGTAGTAGG............................................................................................	21	3	3	0.33	1	1
......................................................................................................................GTCGCGTCGTATGTCCCG.......................................................................................	18	2	8	0.13	1	1

Species	Coordinate	ID	Alignment
dp5	XR_group6:10640199-10640421 -	dps_3142	T-TGCAGGTATTTCATCAAGGTGGCTCGCTCCCAAGACGAGCCAGGCAAGGGCTCTTTCTGGCGCATCGATCCGGACAGCGGGGCCAAGCTGATTGATCACAGCTACAAGAAGCGTCGCCAGCGCAGCAGCCAGGGCTTTCGTCCGCCCTATGGCATGCCCCGTTCGGCGCCCGTTTCCCCGAGTCACATGGGTATGTGGA-----TGGA-TTG-----TGTG--------------------------------------------------------C-------------GTTAATCGCTA
droPer2	scaffold_20:551302-551524 -		T-TGCAGGTATTTCATCAAGGTGGCTCGCTCCCAAGACGAGCCAGGCAAGGGCTCATTCTGGCGCATCGATCCGGACAGCGGGGCCAAGCTGATTGATCACAGCTACAAGAAGCGTCGCCAGCGCAGCAGCCAGGGCTTTCGTCCGCCCTATGGCATGCCCCGTTCGGCGCCCGTTTCCCCGAGTCACATGGGTATGTGGA-----TGGA-TTG-----TGTG--------------------------------------------------------C-------------GTTAATCGCTA
droWil2	scf2_1100000004768:2245882-2246118 +		----CAGGTATTTCATAAAGGTGGCCCGCTCGCAGGATGAACCCGGCAAAGGCTCGTTCTGGCGCATCGATCCCGATAGCGGGGCCAAACTGATCGATCACAGTTACAAAAAGAGGCGGCAACGTAGCAGCCAGGGTTTCCGACCGCCCTATGGTATGCCACGTTCGGCACCTGTCTCGCCGAGTCACATGGGTTAGTAAA-----TGGCATAG-----CTAGACTTCAAGAGACTTAAATGTTT-------------------------ATTA----------------------------AA
droVir3	scaffold_13049:23161979-23162193 -	dvi_21524	T-TGCAGGTATTTCATCAAGGTTGCGCGCTCGCAGGATGAGCCCGGCAAGGGCTCCTTCTGGCGCATCGATCCGGACAGCGGCGCTAAGCTAATCGATCACAGTTACAAGAAGCGTCGCCAGCGCAGCAGTCAGGGCTTCCGTCCGCCCTACGGCATGCCGCGTTCGGCGCCAGTCTCGCCCAGTCATATGGGTAAGTCCTACA------------------------------------CGT----------------------------------------------------CAAGTTTTC
droMoj3	scaffold_6680:17767453-17767675 -		T-TGTAGGTATTTCATCAAGGTAGCGCGCTCGCAGGATGAGCCGGGAAAAGGCTCCTTCTGGCGCATCGATCCGGATAGCGGGGCCAAGCTGATCGATCACAGTTACAAGAAACGTCGCCAGCGCAGCAGTCAGGGCTTCCGTCCGCCCTATGGTATGCCACGGTCGGCGCCCGTCTCGCCCAGTCATATGGGTATGCCCG-------C-----TTA-T---------------------ATATC-------------------------AT---------------------TTTAATTGACG
droGri2	scaffold_15110:18417555-18417772 -		G-CGCAGGTATTTCATCAAGGTGGCTCGCTCGCAGGATGAGCCCGGCAAGGGTTCGTTCTGGCGCATCGATCCGGACAGCGGCGCCAAGCTGATCGATCACAGCTATAAGAAGCGTCGCCAGCGCAGCAGCCAGGGCTTTAGGCCGCCATACGGAATGCCGCGCTCGGCACCCGTCTCGCCCAGTCATATGGGTAAA-----------------------------------------------------------------------------------ATTGCATTCCCAAATCAAGT--CT
droAna3	scaffold_13337:5400246-5400475 -	dan_2430	T-AATAGGTACTTTATAAAGGTGGCACGATCCCAGGACGAACCAGGCAAAGGCTCCTTTTGGCGCATCGATCCCGACAGCGGCGCCAAGTTGATCGACCACAGCTATAAGAAGCGTCGTCAGCGGAGCAGCCAGGGCTTCCGTCCGCCCTACGGCATGCCCCGATCGGCACCAGTTTCGCCCAGTCACATGGGTAGGCCT----------------C-AAA-----TCT--------------TTAATAAGATATATATTT-----------------------------------A--AGCTA
droBip1	scf7180000396371:725607-725824 -		T-TGAAGGTACTTCATAAAGGTGGCCAGATCCCAGGATGAGCCCGGCAAGGGCTCCTTTTGGCGCATTGATCCCGACAGTGGAGCCAAGTTGATCGATCACAGCTATAAGAAGCGTCGTCAGCGAAGCAGCCAGGGCTTCCGTCCACCCTACGGAATGCCCCGCTCGGCACCCGTTTCACCCAGTCACATGGGTTAGTTAGACT------------A-----GGCT----------------TTA-------------------------GA---------CTA------------------AA
droKik1	scf7180000302686:338045-338270 +		T-TTCAGGTATTTCATCAAAGTAGCACGCTCCCAGGACGAGCCGGGCAAGGGTTCCTTCTGGCGAATCGATCCGGACAGCGGCGCAAAGCTAATCGATCATAGCTACAAGAAGCGTCGCCAACGGAGTAGCCAGGGCTTCCGTCCGCCTTACGGAATGCCCCGGTCGGCGCCGGTCTCGCCCAGTCACATGGGTAGGTATC-----TGGC-TAA-----CGAGTTTTCCCGGCCT------------------------------------------------------------------TTA
droFic1	scf7180000454107:459546-459769 -		T-CGCAGGTATTTCATCAAGGTGGCGCGCTCTCAGGACGAACCCGGCAAGGGTTCCTTCTGGCGCATCGATCCGGACAGCGGCGCCAAGCTGATCGACCACAGCTATAAAAAGAGGCGCCAGAGGAGCAGCCAGGGCTTCCGTCCGCCCTACGGGATGCCCCGATCGGCGCCCGTCTCGCCAAGTCACATGGGTAAGCGGTCG-----T-----CTA-CCA-----TCC-----------------------------------------C----------------------GTCGTTCGCAA
droEle1	scf7180000490564:2011558-2011770 -		T-TGCAGGTATTTCATCAAGGTGGCCCGCTCTCAGGACGAGCCCGGCAAGGGCTCATTCTGGCGCATTGATCCGGACAGCGGCGCCAAGCTGATCGATCACAGCTACAAGAAGCGTCGCCAGCGGAGCAGCCAGGGCTTCCGTCCGCCATACGGGATGCCCCGCTCGGCGCCCGTCTCGCCCAGTCACATGGGTAAGTTGGGG-----T-----CTA-AAA-----TC--------------------------------------------------------------------------TA
droRho1	scf7180000780024:282431-282652 +		T-TGCAGGTATTTCATCAAGGTGGCCCGCTCCCAGGACGAGCCCGGCAAGGGTTCCTTCTGGCGCATTGATCCGGACAGCGGCGCCAAGCTGATCGACCACAGCTACAAGAAGCGCCGCCAGCGGAGCAGCCAGGGCTTCCGTCCGCCATACGGGATGCCCCGATCGGCGCCCGTCTCGCCCAGTCACATGGGTAAGTAGTGG-----T-----CTA-AAG-----TCT-----------------------------------------CTT----------------------CGT--GGTA
droBia1	scf7180000302193:507489-507711 +		T-TGCAGGTATTTCATCAAGGTGGCCCGCTCCCAGGACGAACCCGGCAAGGGCTCCTTCTGGCGCATCGATCCGGACAGCGGCGCCAAGCTGATCGACCACAGCTACAAGAAGCGCCGCCAGCGGAGCAGCCAGGGCTTCCGTCCGCCATACGGGATGCCCCGCTCGGCGCCCGTCTCGCCCAGTCACATGGGTAAGTGGTGGTGG--C-----CCA-ACA-----TCT---------------C-------------------------AT-----------------------CA----TTA
droTak1	scf7180000415185:301614-301838 -		C-TGCAGGTATTTCATCAAGGTGGCCCGGTCACAGGACGAGCCCGGCAAGGGCTCCTTCTGGCGCATTGATCCGGACAGCGGCGCCAAGTTGATTGACCACAGCTACAAGAAGCGTCGCCAGCGAAGCAGCCAGGGCTTCCGTCCGCCATACGGGATGCCCCGCTCGGCGCCCGTCTCGCCCAGTCACATGGGTAAGTGGTGG-----T-----TAA-T---------------------CTTCC-------------------------CTTCGAAGC-AT--------------------TC
droEug1	scf7180000409711:2985163-2985411 -		T-TTCAGGTATTTCATCAAGGTGGCGCGCTCCCAGGACGAGCCTGGCAAGGGTTCCTTCTGGCGTATTGATCCAGATAGCGGTGCCAAATTGATCGACCACAGCTACAAGAAGCGTCGCCAGCGGAGCAGCCAGGGCTTCCGCCCGCCATACGGGATGCCTCGCTCGGCGCCAGTCTCGCCCAGTCACATGGGTAAGTTTTTG-----T-----TTAAAAA-----TCT--------------CAACAAAAAAATCTACTCAAAATGTTGCGT----------------------TAT--GGT-
dm3	chr3L:11108966-11109181 -		TCTGCAGGTATTTCATCAAGGTGGCCCGCTCCCAGGACGAGCCCGGAAAGGGTTCCTTCTGGCGTATTGATCCGGACAGCGGTGCCAAGCTGATCGACCATAGCTACAAGAAGCGTCGCCAGCGAAGCAGCCAGGGCTTCCGGCCTCCATACGGTATGCCCCGCTCGGCGCCAGTCTCGCCCAGTCACATGGGTAAGTGACAAT------------------------------------CGTTT-------------------------GTCAGA---------------------------G
droSim2	3l:10851642-10851863 -	dsi_4715	--TGCAGGTATTTCATCAAGGTGGCCCGCTCCCAGGACGAGCCCGGAAAGGGTTCCTTCTGGCGTATTGATCCGGACAGCGGTGCCAAGCTGATCGACCATAGCTACAAAAAGCGTCGCCAGCGCAGCAGCCAGGGCTTCCGCCCTCCATACGGGATGCCCCGCTCGGCGCCAGTCTCGCCCAGTCACATGGGTAAGTGACAAT------------------------------------CATTT-------------------------GTCAGAGGC-ATTG------------------CA
droSec2	scaffold_0:3331323-3331544 -		--TGCAGGTATTTCATCAAGGTGGCCCGCTCCCAGGACGAACCCGGAAAGGGTTCCTTCTGGCGTATTGATCCGGACAGCGGTGCCAAGCTGATCGACCATAGCTACAAAAAGCGTCGCCAGCGCAGCAGCCAGGGCTTCCGCCCTCCCTACGGGATGCCCCGCTCGGCGCCAGTCTCGCCCAGTCACATGGGTAAGTGACAAT------------------------------------CGTTT-------------------------GTCAGAGGC-ATTG------------------CG
droYak3	3L:11137293-11137518 -		G-TGCAGGTATTTCATCAAGGTGGCCCGCTCTCAGGACGAGCCCGGAAAGGGTTCCTTCTGGCGCATTGATCCGGACAGCGGTGCCAAGCTGATCGACCATAGCTACAAGAAGCGTCGCCAGCGAAGCAGCCAGGGCTTCCGCCCTCCATACGGAATGCCCCGCTCGGCGCCCGTCTCGCCCAGTCACATGGGTAAGTGACAAT------------------------------------CGTCC-------------------------ATCAGTAGG-ATTG---------------TACTA
droEre2	scaffold_4784:11115306-11115528 -		C-TGCAGGTATTTTATCAAGGTGGCCCGCTCTCAGGATGAGCCCGGTAAGGGTTCCTTCTGGCGAATTGACCCGGACAGCGGTGCCAAGCTGATCGACCATAGCTACAAGAAGCGTCGTCAGCGAAGCAGCCAGGGCTTCCGCCCTCCGTACGGGATGCCCCGCTCGGCGCCCGTCTCGCCCAGTCACATGGGTAAGTGACGAT------------------------------------CGTCC-------------------------GTCAGAGGC-ATTG------------------TA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

dp5

T-TGCAGGTATTTCATCAAGGTGGCTCGCTCCCAAGACGAGCCAGGCAAGGGCTCTTTCTGGCGCATCGATCCGGACAGCGGGGCCAAGCTGATTGATCACAGCTACAAGAAGCGTCGCCAGCGCAGCAGCCAGGGCTTTCGTCCGCCCTATGGCATGCCCCGTTCGGCGCCCGTTTCCCCGAGTCACATGGGTATGTGGA-----TGGA-TTG-----TGTG--------------------------------------------------------C-------------GTTAATCGCTA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...................................................................................................................................CAGGGCTTTCGTCCGCCCTATGGCAT...................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................CGAGCCAGGCAAGGGCTCTTTCTGGCGC...............................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..................................................................................GGCCAAGCTGATTGATCACAG.........................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................CTTTCTGGCGCATCGATCCGGACAGCGG..............................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................GTATGTGGA-----TGGA-TTG-----TGTG--------------------------------------------------------C-------------GTT........	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..........................................................CTGGCGCATCGATCCGGACAGCGGG.............................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0
...........................................................................................GATTGATCACAGCTACAAG..................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................AGGGCTCTTTCTGGCGCATCG...........................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................GCCAAGCTGATTGATCACAG.........................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................CATGCCCCGTTCGGCGCCCGTTT...............................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................TGGCTCGCTCCCAAGACGAGC......................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
....................................................................GATCCGGACAGCGGGGCCAAGC......................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................ACAGCTACAAGAAGCGTCGCCAGCGCAGC................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0
...............................................................................................................AGCGTCGCCAGCGCAGCAGCCAG..........................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................AGAAGCGTCGCCAGCGCAGCAGCCA...........................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................GCTACAAGAAGCGTCGCCAGCGCAGC................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...................................................................CGATCCGGACAGCGGGGCC..........................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................CATCGATCCGGACAGCGGGGC...........................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................AAGCGTCGCCAGCGCAGCAGCC............................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

T-TGCAGGTATTTCATCAAGGTGGCTCGCTCCCAAGACGAGCCAGGCAAGGGCTCATTCTGGCGCATCGATCCGGACAGCGGGGCCAAGCTGATTGATCACAGCTACAAGAAGCGTCGCCAGCGCAGCAGCCAGGGCTTTCGTCCGCCCTATGGCATGCCCCGTTCGGCGCCCGTTTCCCCGAGTCACATGGGTATGTGGA-----TGGA-TTG-----TGTG--------------------------------------------------------C-------------GTTAATCGCTA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...............................................AAGGGCTCATTCTGGCGC...............................................................................................................................................................................................................................................	18	1	3.00	3	3	0	0	0	0	0
...........................................AGGCAAGGGCTCATTCTGGCGC...............................................................................................................................................................................................................................................	22	1	2.00	2	2	0	0	0	0	0
...............................................................GCATCGATCCGGACAGCGGGGC...........................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
..............................................................CGCATCGATCCGGACAGCGGGGCCA.........................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
..................AGGTGGCTCGCTCCCAAGACG.........................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
...........TTCATCAAGGTGGCTCGCTCCC...............................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
...............................................AAGGGCTCATTCTGGCGCATCGATCCGGA....................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
.....................................................................ATCCGGACAGCGGGGCCA.........................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................CAGGGCTTTCGTCCGCCC...........................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................GTGGA-----TGGA-TTG-----TGTG--------------------------------------------------------C-------------GTTAATC....	24	1	1.00	1	1	0	0	0	0	0
.........................................................................................................ACAAGAAGCGTCGCCAGCGC...................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0

droWil2

----CAGGTATTTCATAAAGGTGGCCCGCTCGCAGGATGAACCCGGCAAAGGCTCGTTCTGGCGCATCGATCCCGATAGCGGGGCCAAACTGATCGATCACAGTTACAAAAAGAGGCGGCAACGTAGCAGCCAGGGTTTCCGACCGCCCTATGGTATGCCACGTTCGGCACCTGTCTCGCCGAGTCACATGGGTTAGTAAA-----TGGCATAG-----CTAGACTTCAAGAGACTTAAATGTTT-------------------------ATTA----------------------------AA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
................................................................................................................................................................ACGTTCGGCACCTGTCTCGCC...........................................................................................................................	21	1	2.00	2	2	0	0	0	0
................................................AAGGCTCGTTCTGGCGCATCGATCC.......................................................................................................................................................................................................................................	25	1	2.00	2	2	0	0	0	0
......................................................................................................GTTACAAAAAGAGGCGGCAACGT...................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
.........................................................................CGATAGCGGGGCCAAACTGATCGAT..............................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
.......................................AACCCGGCAAAGGCTCGTTCTGGCGCATC............................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0
...................................GATGAACCCGGCAAAGGCTC.........................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
..................................................GGCTCGTTCTGGCGCATCGATCC.......................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0
..........TTTCATAAAGGTGGCCCGCTCGCAGGA...........................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0
............................................GGCAAAGGCTCGTTCTGGC.................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
...............................................................................................................................................................CACGTTCGGCACCTGTCT...............................................................................................................................	18	1	1.00	1	0	0	0	1	0
...........TTCATAAAGGTGGCCCGCTCGCAGGATG.........................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0

droVir3

T-TGCAGGTATTTCATCAAGGTTGCGCGCTCGCAGGATGAGCCCGGCAAGGGCTCCTTCTGGCGCATCGATCCGGACAGCGGCGCTAAGCTAATCGATCACAGTTACAAGAAGCGTCGCCAGCGCAGCAGTCAGGGCTTCCGTCCGCCCTACGGCATGCCGCGTTCGGCGCCAGTCTCGCCCAGTCATATGGGTAAGTCCTACA------------------------------------CGT----------------------------------------------------CAAGTTTTC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
........................................................................................................TACAAGAAGCGTCGCCAGCGCA..................................................................................................................................................................................	22	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................GCATCGATCCGGACAGCG...............................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................AATCGATCACAGTTACAAGAAG...............................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................GCATCGATCCGGACAGCGGC.............................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................GTTACAAGAAGCGTCGCCAGCGC...................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................TACAAGAAGCGTCGCCAGC.....................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
........................................................................................................TACAAGAAGCGTCGCCAGCGC...................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
....................................................................................CTAAGCTAATCGATCACAGTT.......................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................TACAAGAAGCGTCGCCAGCGCAGC................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................CTACGGCATGCCGCGTTCGG........................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
........................................................TTCTGGCGCATCGATCCGGACAGCGG..............................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................CATCGATCCGGACAGCGGCG............................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................GCGCTCGCAGGATGAGCCCGGCAAG..............................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................CGCCAGCGCAGCAGTCAGGGC.......................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
................................................................CATCGATCCGGACAGCGGCGC...........................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............ATCAAGGTTGCGCGCTCGCAGGATGA........................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................ATCACAGTTACAAGAAGCGTCGCCAGCGC...................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...............TCAAGGTTGCGCGCTCGCAGGATGA........................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................ATGCCGCGTTCGGCGCCAGTCTC..............................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........ATTTCATCAAGGTTGCGC.....................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

T-TGTAGGTATTTCATCAAGGTAGCGCGCTCGCAGGATGAGCCGGGAAAAGGCTCCTTCTGGCGCATCGATCCGGATAGCGGGGCCAAGCTGATCGATCACAGTTACAAGAAACGTCGCCAGCGCAGCAGTCAGGGCTTCCGTCCGCCCTATGGTATGCCACGGTCGGCGCCCGTCTCGCCCAGTCATATGGGTATGCCCG-------C-----TTA-T---------------------ATATC-------------------------AT---------------------TTTAATTGACG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
......................................................................................................................CCAGCGCAGCAGTCAGGGC.......................................................................................................................................................................	19	1	2.00	2	0	0	0	0	1	1
............................................................GGCGCATCGATCCGGATAGCG...............................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
..........................................................................................................................................................TATGCCACGGTCGGCGCCCGTC................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
..........................................................CTGGCGCATCGATCCGGATAGCGG..............................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
.........................GCGCTCGCAGGATGAGCCGGG..................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0
....................................................................................................................................................CTATGGTATGCCACGGTCGGCGC.....................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0

droGri2

G-CGCAGGTATTTCATCAAGGTGGCTCGCTCGCAGGATGAGCCCGGCAAGGGTTCGTTCTGGCGCATCGATCCGGACAGCGGCGCCAAGCTGATCGATCACAGCTATAAGAAGCGTCGCCAGCGCAGCAGCCAGGGCTTTAGGCCGCCATACGGAATGCCGCGCTCGGCACCCGTCTCGCCCAGTCATATGGGTAAA-----------------------------------------------------------------------------------ATTGCATTCCCAAATCAAGT--CT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
............................................................................................................AGAAGCGTCGCCAGCGCAGCA...............................................................................................................................................................................	21	1	1.00	1	1	0
......................................................................................................................................................ACGGAATGCCGCGCTCGG........................................................................................................................................	18	1	1.00	1	1	0
.........................................................................................................ATAAGAAGCGTCGCCAGCGCAGCAGC.............................................................................................................................................................................	26	1	1.00	1	1	0

droAna3

T-AATAGGTACTTTATAAAGGTGGCACGATCCCAGGACGAACCAGGCAAAGGCTCCTTTTGGCGCATCGATCCCGACAGCGGCGCCAAGTTGATCGACCACAGCTATAAGAAGCGTCGTCAGCGGAGCAGCCAGGGCTTCCGTCCGCCCTACGGCATGCCCCGATCGGCACCAGTTTCGCCCAGTCACATGGGTAGGCCT----------------C-AAA-----TCT--------------TTAATAAGATATATATTT-----------------------------------A--AGCTA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..............................................................................................................................GCAGCCAGGGCTTCCGTCCGCC............................................................................................................................................................	22	1	2.00	2	0	2	0	0	0	0
..................................................................TCGATCCCGACAGCGGCGCC..........................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
..............................................................................GCGGCGCCAAGTTGATCGACCACAGC........................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
...............................................................GCATCGATCCCGACAGCGGCGCC..........................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................GCCCCGATCGGCACCAGTTTCGC............................................................................................................................	23	1	1.00	1	0	0	0	0	1	0
................AAAGGTGGCACGATCCCAGGACGA........................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.................AAGGTGGCACGATCCCAGGACG.........................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
...........................................AGGCAAAGGCTCCTTTTGGCGCA..............................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
.............................................................GCGCATCGATCCCGACAGC................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
...ATAGGTACTTTATAAAGGTGGC.......................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
.............................................................................AGCGGCGCCAAGTTGATCGACC.............................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
..............ATAAAGGTGGCACGATCCCAGGAC..........................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.........................................................................CGACAGCGGCGCCAAGTTGATCGACCA............................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.......................................AACCAGGCAAAGGCTCCTTTTGGCGCATC............................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	1	0	0
..................................................................................................................GTCGTCAGCGGAGCAGCCAGG.........................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0
....................................................................................CCAAGTTGATCGACCACAGCT.......................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.........................................................................................................ATAAGAAGCGTCGTCAGCGGAGC................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
.............................................................................AGCGGCGCCAAGTTGATCGACCACA..........................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
............................ATCCCAGGACGAACCAGGC.................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
................AAAGGTGGCACGATCCCAGGA...........................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
...........................................................................................GATCGACCACAGCTATAAGAAGC..............................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
......................................GAACCAGGCAAAGGCTCCTTTTGGC.................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
.......................................AACCAGGCAAAGGCTCCTTTTGGC.................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
...............................................................................................................AGCGTCGTCAGCGGAGCAGCC............................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1

droBip1

T-TGAAGGTACTTCATAAAGGTGGCCAGATCCCAGGATGAGCCCGGCAAGGGCTCCTTTTGGCGCATTGATCCCGACAGTGGAGCCAAGTTGATCGATCACAGCTATAAGAAGCGTCGTCAGCGAAGCAGCCAGGGCTTCCGTCCACCCTACGGAATGCCCCGCTCGGCACCCGTTTCACCCAGTCACATGGGTTAGTTAGACT------------A-----GGCT----------------TTA-------------------------GA---------CTA------------------AA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

T-TTCAGGTATTTCATCAAAGTAGCACGCTCCCAGGACGAGCCGGGCAAGGGTTCCTTCTGGCGAATCGATCCGGACAGCGGCGCAAAGCTAATCGATCATAGCTACAAGAAGCGTCGCCAACGGAGTAGCCAGGGCTTCCGTCCGCCTTACGGAATGCCCCGGTCGGCGCCGGTCTCGCCCAGTCACATGGGTAGGTATC-----TGGC-TAA-----CGAGTTTTCCCGGCCT------------------------------------------------------------------TTA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

T-CGCAGGTATTTCATCAAGGTGGCGCGCTCTCAGGACGAACCCGGCAAGGGTTCCTTCTGGCGCATCGATCCGGACAGCGGCGCCAAGCTGATCGACCACAGCTATAAAAAGAGGCGCCAGAGGAGCAGCCAGGGCTTCCGTCCGCCCTACGGGATGCCCCGATCGGCGCCCGTCTCGCCAAGTCACATGGGTAAGCGGTCG-----T-----CTA-CCA-----TCC-----------------------------------------C----------------------GTCGTTCGCAA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

T-TGCAGGTATTTCATCAAGGTGGCCCGCTCTCAGGACGAGCCCGGCAAGGGCTCATTCTGGCGCATTGATCCGGACAGCGGCGCCAAGCTGATCGATCACAGCTACAAGAAGCGTCGCCAGCGGAGCAGCCAGGGCTTCCGTCCGCCATACGGGATGCCCCGCTCGGCGCCCGTCTCGCCCAGTCACATGGGTAAGTTGGGG-----T-----CTA-AAA-----TC--------------------------------------------------------------------------TA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

T-TGCAGGTATTTCATCAAGGTGGCCCGCTCCCAGGACGAGCCCGGCAAGGGTTCCTTCTGGCGCATTGATCCGGACAGCGGCGCCAAGCTGATCGACCACAGCTACAAGAAGCGCCGCCAGCGGAGCAGCCAGGGCTTCCGTCCGCCATACGGGATGCCCCGATCGGCGCCCGTCTCGCCCAGTCACATGGGTAAGTAGTGG-----T-----CTA-AAG-----TCT-----------------------------------------CTT----------------------CGT--GGTA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

T-TGCAGGTATTTCATCAAGGTGGCCCGCTCCCAGGACGAACCCGGCAAGGGCTCCTTCTGGCGCATCGATCCGGACAGCGGCGCCAAGCTGATCGACCACAGCTACAAGAAGCGCCGCCAGCGGAGCAGCCAGGGCTTCCGTCCGCCATACGGGATGCCCCGCTCGGCGCCCGTCTCGCCCAGTCACATGGGTAAGTGGTGGTGG--C-----CCA-ACA-----TCT---------------C-------------------------AT-----------------------CA----TTA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

C-TGCAGGTATTTCATCAAGGTGGCCCGGTCACAGGACGAGCCCGGCAAGGGCTCCTTCTGGCGCATTGATCCGGACAGCGGCGCCAAGTTGATTGACCACAGCTACAAGAAGCGTCGCCAGCGAAGCAGCCAGGGCTTCCGTCCGCCATACGGGATGCCCCGCTCGGCGCCCGTCTCGCCCAGTCACATGGGTAAGTGGTGG-----T-----TAA-T---------------------CTTCC-------------------------CTTCGAAGC-AT--------------------TC	Size	Hit Count	Total Norm	Total
No Reads

droEug1

T-TTCAGGTATTTCATCAAGGTGGCGCGCTCCCAGGACGAGCCTGGCAAGGGTTCCTTCTGGCGTATTGATCCAGATAGCGGTGCCAAATTGATCGACCACAGCTACAAGAAGCGTCGCCAGCGGAGCAGCCAGGGCTTCCGCCCGCCATACGGGATGCCTCGCTCGGCGCCAGTCTCGCCCAGTCACATGGGTAAGTTTTTG-----T-----TTAAAAA-----TCT--------------CAACAAAAAAATCTACTCAAAATGTTGCGT----------------------TAT--GGT-	Size	Hit Count	Total Norm	Total
No Reads

dm3

TCTGCAGGTATTTCATCAAGGTGGCCCGCTCCCAGGACGAGCCCGGAAAGGGTTCCTTCTGGCGTATTGATCCGGACAGCGGTGCCAAGCTGATCGACCATAGCTACAAGAAGCGTCGCCAGCGAAGCAGCCAGGGCTTCCGGCCTCCATACGGTATGCCCCGCTCGGCGCCAGTCTCGCCCAGTCACATGGGTAAGTGACAAT------------------------------------CGTTT-------------------------GTCAGA---------------------------G	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.............................TCCCAGGACGAGCCCGGAAAGGGTTCC........................................................................................................................................................................................................................................................	27	1	17.00	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	2	1	7	0	0	0	0	0
..................................................................................................................GTCGCCAGCGAAGCAGCCAGGGCT......................................................................................................................................................................	24	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................TCCCAGGACGAGCCCGGAAAGGGTTC.........................................................................................................................................................................................................................................................	26	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	3	0	0	0	0	0
.........................................CCCGGAAAGGGTTCCTTCTGGCGTATTGA..........................................................................................................................................................................................................................................	29	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................TCCCAGGACGAGCCCGGAAAGGGT...........................................................................................................................................................................................................................................................	24	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0
..............................CCCAGGACGAGCCCGGAAAGGGT...........................................................................................................................................................................................................................................................	23	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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........................................................................................................................................................GGTATGCCCCGCTCGGCGCC....................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................GTATTGATCCGGACAGCGG..............................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................CAGGGCTTCCGGCCTCCATACGGTATG..................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................CTCCATACGGTATGCCCCGCTCGGCGC.....................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......GTATTTCATCAAGGTGGCC......................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................GGCGTATTGATCCGGACAGCGGTGC...........................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................AAGCGTCGCCAGCGAAGT................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

--TGCAGGTATTTCATCAAGGTGGCCCGCTCCCAGGACGAGCCCGGAAAGGGTTCCTTCTGGCGTATTGATCCGGACAGCGGTGCCAAGCTGATCGACCATAGCTACAAAAAGCGTCGCCAGCGCAGCAGCCAGGGCTTCCGCCCTCCATACGGGATGCCCCGCTCGGCGCCAGTCTCGCCCAGTCACATGGGTAAGTGACAAT------------------------------------CATTT-------------------------GTCAGAGGC-ATTG------------------CA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..........................................................................................TGATCGACCATAGCTACAAAAAGCGT............................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................ACGGGATGCCCCGCTCGGC.......................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................ATTGATCCGGACAGCGGTGCCAAGCT.....................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................TTGATCCGGACAGCGGTGCCAAGCT.....................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................TTCTGGCGTATTGATCCGGACAGCGGT.............................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
................................................................TATTGATCCGGACAGCGGTGCCAAG.......................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................ATTGATCCGGACAGCGGTGCC..........................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...............................................................................CGGTGCCAAGCTGATCGACC.............................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................TCTGGCGTATTGATCCGGACAGCGGT.............................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.......................................................................................................CTACAAAAAGCGTCGCCAGC.....................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................ACAGCGGTGCCAAGCTGATCGACCA............................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
................................................................TATTGATCCGGACAGCGGTGCCAAGT......................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................GTGCCAAGCTGATCGACCATAG.........................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

--TGCAGGTATTTCATCAAGGTGGCCCGCTCCCAGGACGAACCCGGAAAGGGTTCCTTCTGGCGTATTGATCCGGACAGCGGTGCCAAGCTGATCGACCATAGCTACAAAAAGCGTCGCCAGCGCAGCAGCCAGGGCTTCCGCCCTCCCTACGGGATGCCCCGCTCGGCGCCAGTCTCGCCCAGTCACATGGGTAAGTGACAAT------------------------------------CGTTT-------------------------GTCAGAGGC-ATTG------------------CG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.................AAGGTGGCCCGCTCCCAGGACG.........................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0
....................................................................................................TAGCTACAAAAAGCGTCGCCAGCGC...................................................................................................................................................................................	25	1	1.00	1	0	0	1	0
............................................................GGCGTATTGATCCGGACAGC................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
.........................................................................................................ACAAAAAGCGTCGCCAGCGCA..................................................................................................................................................................................	21	1	1.00	1	1	0	0	0
........................................................................................................TACAAAAAGCGTCGCCAGCGCAGC................................................................................................................................................................................	24	1	1.00	1	0	0	1	0
................................................................................................................................................................................................GTAAGTGACAAT------------------------------------CGTTT-------------------------GTCAGAGGC-........................	26	1	1.00	1	0	0	1	0

droYak3

G-TGCAGGTATTTCATCAAGGTGGCCCGCTCTCAGGACGAGCCCGGAAAGGGTTCCTTCTGGCGCATTGATCCGGACAGCGGTGCCAAGCTGATCGACCATAGCTACAAGAAGCGTCGCCAGCGAAGCAGCCAGGGCTTCCGCCCTCCATACGGAATGCCCCGCTCGGCGCCCGTCTCGCCCAGTCACATGGGTAAGTGACAAT------------------------------------CGTCC-------------------------ATCAGTAGG-ATTG---------------TACTA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...........................................................................................................AAGAAGCGTCGCCAGCGAAGCAGCCA...........................................................................................................................................................................	26	1	7.00	7	0	0	0	0	0	0	0	0	0	0	7
................................CAGGACGAGCCCGGAAAGGGTTCCT.......................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................TCTGGCGCATTGATCCGGACAGCG...............................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
............TCATCAAGGTGGCCCGCTCTCAGGAC..........................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..............................CTCAGGACGAGCCCGGAAAGGGTTC.........................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................GCTACAAGAAGCGTCGCCAGCGAA..................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................CGGAAAGGGTTCCTTCTGGCGC...............................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..........................................................CTGGCGCATTGATCCGGACAGC................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

C-TGCAGGTATTTTATCAAGGTGGCCCGCTCTCAGGATGAGCCCGGTAAGGGTTCCTTCTGGCGAATTGACCCGGACAGCGGTGCCAAGCTGATCGACCATAGCTACAAGAAGCGTCGTCAGCGAAGCAGCCAGGGCTTCCGCCCTCCGTACGGGATGCCCCGCTCGGCGCCCGTCTCGCCCAGTCACATGGGTAAGTGACGAT------------------------------------CGTCC-------------------------GTCAGAGGC-ATTG------------------TA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
............................................................................................ATCGACCATAGCTACAAGAAGCGTCGTCA.......................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................GACCATAGCTACAAGAAGCGTCGTC........................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
...........................................................................................GATCGACCATAGCTACAAGAAGCGTC...........................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
............................................................................................ATCGACCATAGCTACAAGAAGCGTCGTC........................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
............................................GGTAAGGGTTCCTTCTGGCGAATTG...........................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0

dps_3142

XR_group6:10640249-10640371 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-22.8	-22.8	-22.5