ID:

dps_3138

 Coordinate:

XR_group6:10222295-10222535 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-6.3 -6.1 -6.04 -5.9

Flybase annnotation

exon [dpse_GLEANR_12188:2]; CDS [Dpse\GA23421-cds]; CDS [Dpse\GA23421-cds]; exon [dpse_GLEANR_12188:3]; intron [Dpse\GA23421-in]

No Repeatable elements found

mature
  1. XR_group6:10220417-10220436 -
  2. dps_3138  XR_group6:10222379-10222398 -
star
  1. XR_group6:10220344-10220362 -
  2. dps_3138  XR_group6:10222306-10222324 -

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ACGGCGGGGGAAACTTGAAAGTTCAAATCAGAGAAACGGCAAACGGCTGGGTAAAATGCAGTGTTGGAAACCGAGTCAAAGCAAGCCGTGCTGGAAACCGAGTCAAAGGAAGCAGTGCTGGAAACCGAGTCGAAAGAAACTGCTGGAAAACATACCTCTCTCTCTCTTTCATTTCGTGTGCGACGTTGTAAGTCGTTCTGGCAAAATAAAAATCACATTTTCAATAATCTGAACGTAAGAAATTATTGTATTCTCCGTAAAACTGTTTCTAAGCTCTTTGCCGTCTTGCAGGTAATGGCGCCCCGCAGAAGTGATCGAATTTTGGCGGCCAACCCGGCGTC
*******************************************************************************************************************************************************************************************.((....((..(((..(((((.............(((((((((.......)))..))))))...............)))))))).))....))************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR902011
testis
 M040
female body
 SRR902010
ovaries
 M062
head
 V112
male body		 GSM343916
embryo
...........................................................................................................................................................................................GTAAGTCGTTCTGGCAAAAT...................................................................................................................................... 20 0 2 1.00 2 0 0 2 0 0 0
....................................................................................................................................................................................................................................................................................................................AAGTGATCGAATTTTGGCGG............. 20 0 2 1.00 2 2 0 0 0 0 0
..................................AACGGCGAACGGCTCAGTA................................................................................................................................................................................................................................................................................................ 19 3 7 0.71 5 0 5 0 0 0 0
.......................................................................................................................................................................................CGTTGTAAGTCGTTCTGGCA.......................................................................................................................................... 20 0 2 0.50 1 0 1 0 0 0 0
....................................................................................................................................................................................................................................................................................................................AAGTGATCGAATTTTGGCGGC............ 21 0 2 0.50 1 1 0 0 0 0 0
............................................................................................................................................................................................................................................................................................CTTGCAGGTAATGGCGCCCC..................................... 20 0 4 0.50 2 0 2 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................AGTGATCGAATTTTGGCGGC............ 20 0 2 0.50 1 1 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................TTATCGAATTTTGGCGGCCAACCCGGC... 27 1 2 0.50 1 0 0 0 1 0 0
.....................................................................................................................................................................................................................................................................ACTGTTTCTAAGCTCTTTG............................................................. 19 0 2 0.50 1 1 0 0 0 0 0
.......................CAAATCAGAGAAACGGCAAAC......................................................................................................................................................................................................................................................................................................... 21 0 3 0.33 1 1 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................TGAACGTAATGGCGCCCCGCAGAAG.............................. 25 2 3 0.33 1 1 0 0 0 0 0
..................................................GTGAGATGCAGTGTTGGA................................................................................................................................................................................................................................................................................. 18 2 4 0.25 1 0 0 0 0 1 0
....................GTTCAAATCTGCTAAACGG.............................................................................................................................................................................................................................................................................................................. 19 3 18 0.17 3 0 3 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................CGAATTTTGGAGACCAAC........ 18 2 12 0.08 1 0 1 0 0 0 0
.............................AGAGAAACAGCAAAAGGCT..................................................................................................................................................................................................................................................................................................... 19 2 16 0.06 1 0 0 0 0 0 1
...................AGTTCAAATCTGCTAAACG............................................................................................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 1 0 0 0 0

Anti-sense strand reads

TGCCGCCCCCTTTGAACTTTCAAGTTTAGTCTCTTTGCCGTTTGCCGACCCATTTTACGTCACAACCTTTGGCTCAGTTTCGTTCGGCACGACCTTTGGCTCAGTTTCCTTCGTCACGACCTTTGGCTCAGCTTTCTTTGACGACCTTTTGTATGGAGAGAGAGAGAAAGTAAAGCACACGCTGCAACATTCAGCAAGACCGTTTTATTTTTAGTGTAAAAGTTATTAGACTTGCATTCTTTAATAACATAAGAGGCATTTTGACAAAGATTCGAGAAACGGCAGAACGTCCATTACCGCGGGGCGTCTTCACTAGCTTAAAACCGCCGGTTGGGCCGCAG
*************************************************************.((....((..(((..(((((.............(((((((((.......)))..))))))...............)))))))).))....))******************************************************************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 GSM343916
embryo
 GSM444067
head
 SRR902011
testis
....................................................................TTCGCTCAGTTTCGTTCGACACC.......................................................................................................................................................................................................................................................... 23 3 3 0.33 1 0 1 0 0
...................................................................................................................................................................................................................................................................................GAAACGGCAGAACGTCCATTA............................................. 21 0 4 0.25 1 1 0 0 0
......................AGGGTAGTCTCTTTGCCGGTT.......................................................................................................................................................................................................................................................................................................... 21 3 6 0.17 1 1 0 0 0
..................................................................................................GGTCAGTTTCCTTCGACACGAT............................................................................................................................................................................................................................. 22 3 6 0.17 1 0 0 1 0
...............................................................................................................................................................................................................................................................................................CGTCCATTACCGTGGGGCGTT................................. 21 2 6 0.17 1 1 0 0 0
...........................................................................AGTTTCGTTCGACACGAT........................................................................................................................................................................................................................................................ 18 2 7 0.14 1 0 1 0 0
................................................................................................................................................CATTTTGTCTGGAGAGAGTGA................................................................................................................................................................................ 21 3 9 0.11 1 0 0 0 1
................................................................................................................................................................................................................................................................................................GTCTAGTACCGCGGGTCGTCT................................ 21 3 10 0.10 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 XR_group6:10222245-10222585 - dps_3138 ACGGCGGGGGAAACTTGAAAGTTCAAATCAGAGAAACGGCAA-ACGGCTGGGTAAAATGCAGTGTTGGAAACCGAGTCAAAGCAAGCCGTGCTGGAAACCGAGTCAAAGGAAGCAGTGCTGGAAACCGAGTCGAAAGAAACTGCTGGAAAACATACCTCTCTCTCTCTTTCATTTCGTGTGCGACGTTGTAAGTCGTTCTGGCAAAATAAAAATCACATTTTCAATAATCTGAACGTAAGAAATTATTGTATTCTCCGTAAAACTGTT-TCTAAGCTCTTTGCCGTCTTGCAGGTAATGGCGCCCCGCAGAAGTGATCGAATTTTGGCGGCCAACCCGGCGTC
droPer2 scaffold_20:155278-155618 - ACGGCGGGGGAAACTTGAAAGTTCAAAACAGAGAAACGGCAAAACAGCTGGGCAAAATGTAGTGTTGGAAACCGAGTCAAAGCAAGCTGTGCTGGAAACCGAGTCAAAGGAAGCAGTGCTGGAAACCGAGTCGAAAGAAACTGCTGGAAAACATACCTCTC--TCTCTTTCATTTCGTGTGCGACGTTGTAAGTCGTTCTGGCAAAATAAAAATCACATTTTCAATAATCTGAACGTAAGAAATTATCGTATTCCCCGTAAAAGTGTTTTCTAAGCTGTTTGCCGTCTTGCAGGTAATGGCGCCCCGCAGAAGTGCACGTATTTTGGCGGCCAACCAGGCGTC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
ACGGCGGGGGAAACTTGAAAGTTCAAATCAGAGAAACGGCAA-ACGGCTGGGTAAAATGCAGTGTTGGAAACCGAGTCAAAGCAAGCCGTGCTGGAAACCGAGTCAAAGGAAGCAGTGCTGGAAACCGAGTCGAAAGAAACTGCTGGAAAACATACCTCTCTCTCTCTTTCATTTCGTGTGCGACGTTGTAAGTCGTTCTGGCAAAATAAAAATCACATTTTCAATAATCTGAACGTAAGAAATTATTGTATTCTCCGTAAAACTGTT-TCTAAGCTCTTTGCCGTCTTGCAGGTAATGGCGCCCCGCAGAAGTGATCGAATTTTGGCGGCCAACCCGGCGTCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................................................................................................................................................................................GTAAGTCGTTCTGGCAAAAT.......................................................................................................................................2021.0020000000200
......................................................................................................................................................................................................................................................................................................................AAGTGATCGAATTTTGGCGG.............2021.0020000000020
........................................................................................................................................................................................CGTTGTAAGTCGTTCTGGCA...........................................................................................................................................2020.5010100000000
......................................................................................................................................................................................................................................................................................................................AAGTGATCGAATTTTGGCGGC............2120.5010000000010
..............................................................................................................................................................................................................................................................................................CTTGCAGGTAATGGCGCCCC.....................................2040.5020200000000
.......................................................................................................................................................................................................................................................................................................................AGTGATCGAATTTTGGCGGC............2020.5010000000010
......................................................................................................................................................................................................................................................................ACTGTT-TCTAAGCTCTTTG.............................................................1920.5010000000010
.......................CAAATCAGAGAAACGGCAA-AC..........................................................................................................................................................................................................................................................................................................2130.3310000000010
droPer2
ACGGCGGGGGAAACTTGAAAGTTCAAAACAGAGAAACGGCAAAACAGCTGGGCAAAATGTAGTGTTGGAAACCGAGTCAAAGCAAGCTGTGCTGGAAACCGAGTCAAAGGAAGCAGTGCTGGAAACCGAGTCGAAAGAAACTGCTGGAAAACATACCTCTC--TCTCTTTCATTTCGTGTGCGACGTTGTAAGTCGTTCTGGCAAAATAAAAATCACATTTTCAATAATCTGAACGTAAGAAATTATCGTATTCCCCGTAAAAGTGTTTTCTAAGCTGTTTGCCGTCTTGCAGGTAATGGCGCCCCGCAGAAGTGCACGTATTTTGGCGGCCAACCAGGCGTCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....................................................................................................GAGTCAAAGGAAGCAGTGCT...............................................................................................................................................................................................................................2020.501000001
..............................................GCTGGGCAAAATGTAGTGTT.....................................................................................................................................................................................................................................................................................2050.201000001
...........................................................................................CTGGAAACCGAGTCAAAGGAA.......................................................................................................................................................................................................................................2150.201000001
............................................................................................................................................................................................................................................TAAGAAATTATCGTATTCCCC......................................................................................2170.141010000

Generated: 05/18/2015 at 06:17 AM