dps_3105

Name	Class	Family	Strand
(TCG)n	Simple_repeat	Simple_repeat	+

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## AAATAGTCGCCGGACCAGCGGCCCTGGGGAAGCCCGCACCGGGGGCTGATCCCGGGCCTGTTGCTACCGGCGGCGCCACCGACAACGATGACGACGCTGACGACGCTGACGACGCTGACGACGACGACGAGTACGATGAGGACGATGAGGAAGATGATGATGATATTGATGATGGAGTCGATGAAATTGGTGAAATTGCAGGTATAGCCGGCGACGACGACGAGGAGGCCGACGATGATGAGGACGACGAC ************************************************((((..(((((((.((((((((.((.((.((....)).)).)).)))))....((.((.((.((....)).)).)).)).))))))).)))....)).)).............(((((((......)))))))..................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	GSM343916 embryo	M059 embryo	M040 female body	SRR902011 testis
...............................................................................................................................................................................................................................GGAGGCCGAAGATGGTGAGGA.......	21	2	1	1.00	1	0	0	1	0
.......................CTGGGGAAGCCCGCACCGGGGGCTGATCC.......................................................................................................................................................................................................	29	0	1	1.00	1	0	1	0	0
.........................................................................................................................................................................TGATGGAGTCGATGAAAGTGGT............................................................	22	1	1	1.00	1	1	0	0	0
.........................................................................................................................................................ATGATGATGATATTGATGATGGA...........................................................................	23	0	1	1.00	1	1	0	0	0
.........................................................CTGGTCCTACCGGCTGCGCCA.............................................................................................................................................................................	21	3	3	0.67	2	0	2	0	0
...........................................................GTGGCTACCGGCTGCGCCA.............................................................................................................................................................................	19	2	2	0.50	1	0	0	1	0
.............................................CTGATCCCGCGCTTGTTGC...........................................................................................................................................................................................	19	2	5	0.20	1	1	0	0	0
.........................................................................................................................................AAGGACGATGAGGACGAGGATGATGA........................................................................................	26	3	20	0.15	3	0	0	0	3
.........................................................CTGGTCCTACCGGCTGCGCC..............................................................................................................................................................................	20	3	8	0.13	1	0	1	0	0
.................................................................................................................................................TGAGGAAGATGAGGATGATT......................................................................................	20	2	13	0.08	1	0	0	1	0
..............................................................................................................................................................................................................................AGGAGTACGAAGATGATGAGGAC......	23	3	13	0.08	1	0	0	1	0
........................................................................................................................................................................................AATTGGTGAAATTTCTGG.................................................	18	2	20	0.05	1	1	0	0	0

TTTATCAGCGGCCTGGTCGCCGGGACCCCTTCGGGCGTGGCCCCCGACTAGGGCCCGGACAACGATGGCCGCCGCGGTGGCTGTTGCTACTGCTGCGACTGCTGCGACTGCTGCGACTGCTGCTGCTGCTCATGCTACTCCTGCTACTCCTTCTACTACTACTATAACTACTACCTCAGCTACTTTAACCACTTTAACGTCCATATCGGCCGCTGCTGCTGCTCCTCCGGCTGCTACTACTCCTGCTGCTG ************************************************((((..(((((((.((((((((.((.((.((....)).)).)).)))))....((.((.((.((....)).)).)).)).))))))).)))....)).)).............(((((((......)))))))..................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M040 female body	M059 embryo
..............................................................................................................................................GCTACGCCTTCTACAACTAC.........................................................................................	20	2	4	0.25	1	1	0
....................................................................CCTCCGCGATGGCTGATG.....................................................................................................................................................................	18	3	20	0.05	1	0	1

Species	Coordinate	ID	Alignment
dp5	XR_group6:8581581-8581831 -	dps_3105	AA------------ATAGTCGCCGGACC---AGCGGCCCTGGGGAAGCCCG---CACCGGG------------G-------------------------------G---C---------------------TGATCCCGGG-------CCTGTTGCTACCGGC---GG---CGCCACC---GACAACGATGACG---ACGCTGACGACGCT------GAC---------------GACGCTGACGACGACGACGAGTACGAT---------GAGGACG---A------------TGAGGAAGATGATGATGATATTGATGATGGAGTCGATGAAATTGGTGAAATTGCAGGTATAG---CCGGCGACGACGACGAGGAGGC---CGACGATGATGAGGACGACGAC
droPer2	scaffold_26:50828-51034 +		CG------------CAT--GGAAGGC---------ATCTCGGAG--CATGG---CAAC------------------------------------------------------------------------------------------GATGATGACGTCGACGACGACGACGACGAC---GAC---------G---ACGACGACGAC---------------------------GACGACGA---------CGACGACGAC---------GAGGACGACGACAAGGACGACAACGACGACGACGACGATGACGACGACGACGACGACG---------------ATGACGATGACG---ACGACGACGAAGAAGAAGAAGA---TGAAGATGAAGACGACGACGAC
droWil2	scf2_1100000004837:487324-487619 +	dwi_2263	AA------------GCAGCAGCAGCAGC---AGCAACTTTGGGTCAGCCAG---TGGGAG-CGCTG---GGCGTGGCCCTGCCTCCGGCTAGTGCTGGTTCAGGTTTAGT------------TAC------TG---CTGCA-GTGGCCACTGATAACGCCGACAGCAA---T---------AATAATAATAATAATGACAACGACGAC---------GAA---------------GACGATGA---------CGACTATGAT---------GATGATG---ATGATGA---TGATGATGAAGATGATGATGATATTGATGATGGGGTCGATGAAATTGATGAAATTGCAGGTCTAA---CTGGTGATGACGATGAGGAGGC---TGACGATGATGACGATGACGAC
droVir3	scaffold_13049:15967863-15968116 -	dvi_20140	AT------------TTAGTTGTCAGC------ACCGCTCCGGCGCAGCCAG---TAGTAGGCGCTG---TGGGC-------------------------------GTGGCAACTGGGCCAAATGCAGCGCCTGCTGCTGTT-------AATGTTGCCGCCGGC---GC---A---------GCG---------T------CTGACGAC---------GAA---------------GACGATGA---------CGATGAGGACG------ATGAATATG---ATGA------TGATGATGGTGATGATGATGATATTGATGATGGAGTCGATGAA---------ATTACAGGTGCGCTGACAGGTGACGA---CGAGGAGTCTGACGACGATGACGATGATGACGAC
droMoj3	scaffold_6680:20817370-20817626 +	dmo_2552	AT------------CTAGTCGTCAGC------ACCGCTCCGGCGCAGTCGG---CGGTGGGCGCTG---TGGGC-------------------------------GTGTCAGCGGGGCCGATCGCAGCGCCTGCTGCTGGT-------ATTAGTGGCGCCGGT---GC---A---GCGTCTGAT---------G---ACGAAGACGAC---------GAC---------------GACGACGA---------CGAGGACGAT---------GAATATG---ATGA------TGATGATGATGGTGGTGATGATATTGATGATGGAGTCGATGAA---------ATTACAGGTGCGC---TGACAGGTGACGACGAGGAGGC---TGACGACGACGAAGATGACGAT
droGri2	scaffold_15110:12692189-12692439 +		ACAAT---------TTAATTGTCGGC------ACTGCTCCGGCCCAGCAAG---TAGTGGGCGTGG---CAG-T-------------------------------GGGAC-----AGCCACTTGCAGCGCCCGCTGCTGCT-------AATGCTGGTGCCGGT---GC---A---------------------------GCGTCCGACGAT------GAT---------------GACTATGACGA------CGAGGACGAT---------GAATATG---ATGA------TGATGATTATAGTGATGATGATATTGATGAAGGAGTCGATGAA---------ATTACAGGTGCGCTGACAGGTGACGACGAGGAGGCTGA---CGACGATGATGATGACGATGAC
droAna3	scaffold_13337:15097860-15098134 -	dan_2655	ACAACAACAACAATGTGGTGGGCGGTGG---TGCGATCTTGGGGCAAGCGG---CGACACCTGTTG---CAGAT-------------------------------A---T---------TGCCAC------TGC-CCCGGGAGCG---GGCGCTGCTGCCACC---AC---T---------GCC---------G---ACACTGACGCT---------GAC---GACGATTTGTACGATGATGA---------CGAGGACGCGG------AGGACGATG---GGGA------GGAAGATGATGATGATGATGATATTGATGATGGAGTCGATGAAATTGGTGAAATTGCAGGTATCG---CCGGCGACGACGACGAGGAGGG---CGACGATGATGATGAGGACGAC
droBip1	scf7180000394330:52800-53083 +		AC------------TTGGTGGCCGGTGGTGCAACAATCTTGGGGCAACCGG---CGACACCTGTTG---CCGGA-------------------------------GAGGTTGCAGGAATAGCTGC------TG-TCCCGGGAGCGGGCGCTACTGCCACTGAC---GC---C---------------------G---ACACTGACGACGCGGACGACGATGACGACGATTTG------TA------------CGATGATGAC---------GAGGACG---AAGAGGACGAAGAGGACGATGATGATGATGATATTGATGATGGAGTCGATGAAATTGGTGATATTGCAGGTATCG---CCGGCGATGACGACGAGGAAGG---CGACGATGATGATGAGGACGAC
droKik1	scf7180000302334:252018-252274 +		AT------------CTGGTGGCCAGTGC---GGCGACCTTGGGGCCACTTGCCACACCAGGTGTGG---CAGGT-------------------------------G---T---------------------TGCTCCGGGG-------ATAGTTGCCACTGGCGCCAC---C---------GAC---------A---ACACTGACAAC---------AAC---------------GACGACGACGA------CGAGGACGACGAGTATGATGATGACGAGGACGA---------GGACGATGATGATGATGATATTGATGATGGAGTCGATGAAATTGGTGATATTACAGGTATCG---CCGGTGCCGATGACGAGGAGGC---CGATGATGATGATGACGACGAC
droFic1	scf7180000453841:876493-876755 +		AG------------CTGGTGGCCAGTGGGACGACGACCTTGGGGCAACAGCCGGCAGCAGTTGTTGTTGCAGGC-------------------------------AATGT---------------------TGCTCCGGGG-------AATGTTGCCCCTGGC---GC---CGGCA------AT---------G---ACATAGACAAC---------GCT---------------GACGATGA---------CGATTATGAT---------GAGGACGACGACGAGGACGATGATGATGATGATGGTGATGATATTGATGATGGAGTCGATGAAATTGGTGAAATTACAGGTATCG---CCGGTGACGACGACGAGGAGGC---CGACGATGATGATGACGATGAC
droEle1	scf7180000490564:1003514-1003749 -		---------------TGGTGTCCAGTGC---TACGACCTTGGGGCAACCAG---CAGCACTTGTTG---CCGGT-------------------------------G---T---------------------TGCTCCGGGG-------AGTGTTGCTGCTGGC---AC---C---------GAC---------G---ACACTGACAAC---------GCT---------------GACGATGA---------CGAATATGAT---------GAGGACG---ACGAGGA------CGATGAAGATGATGATGATATTGATGATGGAGTCGATGAAATTGGTGAAATTACAGGTATCG---CCGGTGATGACGACGAGGAGGC---CGACGATGATGATGACGATGAC
droRho1	scf7180000780105:215119-215354 +		---------------TGGTGGCCAGTGG---TGCGACCTTGGGGCAACCTG---CAACACTTGTTG---CCGGT-------------------------------G---T---------------------TGCTCCGGGG-------GGTGTTGCTGCTGGC---AC---C---------GAC---------G---ACACTGACAAC---------GCT---------------GACGATGA---------CGATTATGAT---------GAGGACG---ACGAGGA------CGATGATGATGATGATGATATTGATGATGGAGTCGATGAAATTGGTGAAATTACAGGTATCG---CCGGTGATGACGACGAGGAGGC---CGACGATGATGATGACGATGAC
droBia1	scf7180000302428:7572469-7572716 +		AG------------CTGGTGGCCAGTGG---GACGACCTCGGGGCAACCGG---CAACACTTGTTG---CCGGT-------------------------------G---T---------------------TGCTCCCGGG-------AGTGTTGCCGCTGGC---AC---C---------GACAACGATAACAACGACACGGACAAC---------GTA---------------GACGATGA---------CGATTATGAT---------GAGGACG---ACGAG---------GACGATGATGATGATGATATTGATGATGGAGTCGATGAAATTGGTGAAATTACAGGTATCG---CCGGTGACGATGACGAGGAGGC---CGACGATGATGATGACGATGAC
droTak1	scf7180000415209:211316-211557 -		---------------TGGTGGCCAGTGG---AACGACCTTGGGGCAGCCGG---CGACACATGTTG---CCGGT-------------------------------G---T---------------------TGCTCCCGGG-------AATGTTGCTGCTGGC---AC---CGACAAC---AAC---------G---ACATTGACAAC---------GCC---------------GACGATGA---------CGATTATGAG---------GACGACG---ACGAGGA------CGATGATGATGATGATGATATTGATGATGGGGTCGATGAAATTGGTGAAATTGCAGGTATCG---CCGGTGACGATGACGAGGAGGC---CGACGATGATGATGACGATGAC
droEug1	scf7180000409711:2042995-2043233 -		---------------TGGTGACCAGTGG---GACGACCTTGGGGCAACCGG---CAACACTTGTTGCTGCCGGT-------------------------------GTTGT---------------------TGCTCCGGGG-------AATGTTGCTGCTGGC---AC---C---------GTT---------G---ACACGGACAAC---------GCT---------------GACGATGA---------CGAATATGAT---------GAGGACG---ACGAG---------GACGATGATGATGATGATATTGATGATGGAGTCGATGAAATTGGTGAAATTGCAGGTATCG---CCGGTGACGACGACGAGGAGGC---CGACGATGATGATGACGATGAC
dm3	chr3L:10188046-10188287 -		AG------------CTGGTGGCCAGTGG---GACGACCTTGGGGCAACCCG---CGGCAGTTGTTG---CAGGT-------------------------------GCGGT---------------------TGCTCCCGGG-------AATGTTGCCGCTGGC---GC---C---------GAT---------G---ACACTGACAAC---------------------------GACGATGA---------CGATTATGAT---------GAGGACG---ACGAGACC---GATGATGATGATGATGATGATATTGATGATGGAGTCGATGAAATTGGTGAAATTACAGGTATCG---CCGGTGACGACGACGAGGAGGC---CGACGATGATGATGACGATGAC
droSim2	3l:9932799-9933037 -	dsi_26023	AG------------CTGGTGGCCAGTGG---GACGACCTTGGGGCAACCGT---CGGCAGTTGTTG---CAGGT-------------------------------GCGGT---------------------TGCTCCCGGG-------AATGTTGCCGCTGGC---GC---C---------GAC---------G---ACACTGACAAC---------------------------GACGATGA---------CGATTATGAT---------GAGGACG---ACGAGAC------CGATGATGATGATGATGATATTGATGATGGAGTCGATGAAATTGGTGAAATTACAGGTATCG---CCGGTGACGACGACGAGGAGGC---CGACGATGATGATGACGATGAC
droSec2	scaffold_8200:1258-1498 -		AG------------CTGGTGGCCAGTGG---GACGACCTTGGGGCAACCGT---CGGCAGTTGTTG---CAGGT-------------------------------GCGGT---------------------TGCTCCCGGG-------AATGTTGCCGCTGGC---GC---C---------GAC---------G---ACACTGACAAC---------------------------GACGATGA---------CGATTATGAT---------GAGGACG---ACGAGACC---GATGATGATGATGATGATGATATTGATGATGGAGTCGATGAAATTGGTGAAATTACAGGTATCG---CC-GTGACGACGACGAAGAAGC---CGACGATGATGATGACGATGAC
droYak3	3L:10173480-10173727 -	dya_758	AA------------CTGGTGGCCAGTGG---GCCGACCTTGGGGCAACCGGCGGCGACAGGTGTTG---CAAGT-------------------------------GGGGT---------------------TGCCCCCGGG-------AATGTTGCCGCTGGC---GC---C---------GAC---------G---ACACTGACAAC---------GAC---------------GACGATGA---------CGATTATGAT---------GAGGACG---ACGAGACC---GATGATGATGATGATGATGATATTGATGATGGAGTCGATGAAATTGGTGAAATTACAGGTATCG---CCGGTGACGACGACGAGGAGGC---CGACGATGATGATGACGATGAC
droEre2	scaffold_4784:10176406-10176644 -		AG------------CTGGTGGCCAGTGG---GACGACCTTGGGGCAACCGG---CGACAGGTGTTG---CAAGT-------------------------------GGGGT---------------------TGCTCCCGGG-------AATGTTGCCGCTGGC---GC---C---------GAC---------G---ACACTGACAAC---------------------------GACGATGA---------CGATTATGAT---------GAGGACG---ACGAGAC------CGATGATGATGATGATGATATTGATGATGGAGTCGATGAAATTGGTGAAATTACAGGTATCG---CCGGCGACGACGACGAGGAGGC---CGACGATGATGATGACGATGAC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

dp5

AA------------ATAGTCGCCGGACC---AGCGGCCCTGGGGAAGCCCG---CACCGGG------------G-------------------------------G---C---------------------TGATCCCGGG-------CCTGTTGCTACCGGC---GG---CGCCACC---GACAACGATGACG---ACGCTGACGACGCT------GAC---------------GACGCTGACGACGACGACGAGTACGAT---------GAGGACG---A------------TGAGGAAGATGATGATGATATTGATGATGGAGTCGATGAAATTGGTGAAATTGCAGGTATAG---CCGGCGACGACGACGAGGAGGC---CGACGATGATGAGGACGACGAC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
......................................CTGGGGAAGCCCG---CACCGGG------------G-------------------------------G---C---------------------TGATCC.............................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................ATGATGATGATATTGATGATGGA.................................................................................	23	1	1.00	1	0	0	0	0	1	0	0	0	0	0

droPer2

CG------------CAT--GGAAGGC---------ATCTCGGAG--CATGG---CAAC------------------------------------------------------------------------------------------GATGATGACGTCGACGACGACGACGACGAC---GAC---------G---ACGACGACGAC---------------------------GACGACGA---------CGACGACGAC---------GAGGACGACGACAAGGACGACAACGACGACGACGACGATGACGACGACGACGACGACG---------------ATGACGATGACG---ACGACGACGAAGAAGAAGAAGA---TGAAGATGAAGACGACGACGAC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.............................................................................................................................................................................................................................................................................................................................................................GATGACG---ACGACGACGAAGAAGA...............................	23	1	2.00	2	2	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................ATGACGATGACG---ACGACGACGAAGAA.................................	26	1	2.00	2	2	0	0	0	0	0
...................................................................................................................................................................................................................................................................GAC---------GAGGACGACGACAAGGAC.....................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................CGAC---------GAGGACGACGACAAGGACGACAA................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................GACAAGGACGACAACGACGACGA.......................................................................................................	23	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................G---ACGACGACGAAGAAGAA..............................	18	2	0.50	1	0	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................CGACGACGATGACGACGACGA.....................................................................................	21	20	0.25	5	4	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................CGACGATGACGACGACGACGACG................................................................................	23	20	0.20	4	3	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................GACGACGACGACGACG---------------ATGACGAT......................................................	24	13	0.15	2	2	0	0	0	0	0
.................................................................................................................................................................................................................................................GA---------CGACGACGAC---------GAGGACG................................................................................................................................	19	20	0.15	3	3	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................CGACGACGACGACGATGACGACGA........................................................................................	24	7	0.14	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................CGACGATGACGACGACGACGA..................................................................................	21	20	0.10	2	0	2	0	0	0	0
.............................................................................................................................................................................................................................................................................................................GACGACGATGACGACGACGAC....................................................................................	21	20	0.10	2	2	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................GACGATGACG---ACGACGACGA.....................................	20	20	0.10	2	0	2	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................CGACGACGACGACG---------------ATGACGAT......................................................	22	18	0.06	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................ACGACGACGACGACGATGAC.............................................................................................	20	20	0.05	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................CGATGACGACGACGACGACGA...............................................................................	21	20	0.05	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................GACGATGACGACGACGACGACGAC..............................................................................	24	20	0.05	1	0	1	0	0	0	0
...........................................................................................................................................................................CGACGAC---GAC---------G---ACGACGAC.........................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................CGACG---------------ATGACGATGACG---A..............................................	18	20	0.05	1	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................GACGACGACGACGACG---------------ATGA..........................................................	20	20	0.05	1	0	0	0	0	0	1
..........................................................................................................................................................................................................................................................................................................................ACGACGACGACGACG---------------ATGAC.........................................................	20	20	0.05	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................GACGATGACGACGACGACGACGACG---------------..............................................................	25	20	0.05	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................ACGACGATGACGACGACGA.....................................................................................	19	20	0.05	1	0	1	0	0	0	0

droWil2

AA------------GCAGCAGCAGCAGC---AGCAACTTTGGGTCAGCCAG---TGGGAG-CGCTG---GGCGTGGCCCTGCCTCCGGCTAGTGCTGGTTCAGGTTTAGT------------TAC------TG---CTGCA-GTGGCCACTGATAACGCCGACAGCAA---T---------AATAATAATAATAATGACAACGACGAC---------GAA---------------GACGATGA---------CGACTATGAT---------GATGATG---ATGATGA---TGATGATGAAGATGATGATGATATTGATGATGGGGTCGATGAAATTGATGAAATTGCAGGTCTAA---CTGGTGATGACGATGAGGAGGC---TGACGATGATGACGATGACGAC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..................................................................................................................................................................................................................................................................................................................................GGGGTCGATGAAATTGAA..................................................................	18	1	1.00	1	0	0	0	1	0
...................................ACTTTGGGTCAGCCAG---TGGGAG-CGCTG---G................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................GAGGC---TGACGATGATGACGATGACGAC	27	1	1.00	1	1	0	0	0	0
..................................................................................................................................................................................................................................................................................GATG---ATGATGA---TGATGATGA..........................................................................................................	20	20	0.35	7	0	0	0	7	0
AA------------GCAGCAGCAGCAGC---AGCA...................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.15	3	0	0	0	3	0
.........................................................................................................................................................................................................................................................................................ATGATGA---TGATGATGAAGATGATGAT................................................................................................	26	9	0.11	1	0	0	1	0	0
.....................................................................................................................................................................................................................................................................T---------GATGATG---ATGATGA---TGATGATGAA.........................................................................................................	25	20	0.10	2	0	0	1	1	0
.................................................................................................................................................................................................................................................................ATGAT---------GATGATG---ATGATGA---...................................................................................................................	19	20	0.10	2	0	0	2	0	0
...............................................................................................................................................................................................................................................................................................A---TGATGATGAAGATGATGATG...............................................................................................	21	20	0.10	2	0	0	0	1	1
..............................................................................................................................................................................................................................................................................................GA---TGATGATGAAGATGATGAT................................................................................................	21	20	0.10	2	0	0	2	0	0
...........................................................................................................................................................................................................................................................................................GATGA---TGATGATGAAGATGATGAT................................................................................................	24	11	0.09	1	0	0	1	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................GACGATGATGACGATGACGAC	21	11	0.09	1	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................ATGATGA---TGATGATGAAGATGATGA.................................................................................................	25	13	0.08	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................CGATGATGACGATGACGAC	19	16	0.06	1	0	0	1	0	0
....................................................................................................................................................................................................................................................................................................GATGATGAAGATGATGATGAT.............................................................................................	21	19	0.05	1	0	0	0	0	1
...............................................................................................................................................................................................................................................................................................A---TGATGATGAAGATGATGA.................................................................................................	19	20	0.05	1	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................ATGATGA---TGATGATGAAGAT......................................................................................................	20	20	0.05	1	0	0	1	0	0
....................................................................................................................................................................................................................................................................................TG---ATGATGA---TGATGATGAAGA.......................................................................................................	21	20	0.05	1	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................G---ATGATGA---TGATGATGAAGAT......................................................................................................	21	20	0.05	1	0	0	1	0	0
...............................................................................................................................................................................................................................................................CTATGAT---------GATGATG---ATGATGA---...................................................................................................................	21	20	0.05	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................ATG---ATGATGA---TGATGATGAAGAT......................................................................................................	23	20	0.05	1	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................TGACGATGATGACGATGA....	18	20	0.05	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................TGATGA---TGATGATGAAGA.......................................................................................................	18	20	0.05	1	0	0	0	1	0
................................................................................................................................................................................................................................................................................ATGATG---ATGATGA---TGATGATGAAG........................................................................................................	24	20	0.05	1	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................................................GACGATGATGACGATGAC...	18	20	0.05	1	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................ATGATGAAGATGATGATGAT.............................................................................................	20	20	0.05	1	0	0	1	0	0
.............................................................................................................................................................................................................................................................GACTATGAT---------GATGATG---ATGA.........................................................................................................................	20	20	0.05	1	0	0	0	1	0
..................................................................................................................................................................................................................................................................................GATG---ATGATGA---TGATGATGAAG........................................................................................................	22	20	0.05	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................TGATGA---TGATGATGAAGATG.....................................................................................................	20	20	0.05	1	0	0	1	0	0
...............................................................................................................................................................................................................................................................................................A---TGATGATGAAGATGATGAT................................................................................................	20	20	0.05	1	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................................................GACGATGATGACGATGACGA.	20	20	0.05	1	0	0	1	0	0
.....................................................................................................................................................................................................................................................................T---------GATGATG---ATGATGA---TGATGATGAAG........................................................................................................	26	20	0.05	1	0	0	0	1	0
..................................................................................................................................................................................................................................................................................GATG---ATGATGA---TGATGATGAAGA.......................................................................................................	23	20	0.05	1	0	0	0	1	0
....................................................................................................................................................................................................................................................................AT---------GATGATG---ATGATGA---TGATG..............................................................................................................	21	20	0.05	1	0	0	0	0	1
....................................................................................................................................................................................................................................................................................................GATGATGAAGATGATGAT................................................................................................	18	20	0.05	1	0	0	1	0	0

droVir3

AT------------TTAGTTGTCAGC------ACCGCTCCGGCGCAGCCAG---TAGTAGGCGCTG---TGGGC-------------------------------GTGGCAACTGGGCCAAATGCAGCGCCTGCTGCTGTT-------AATGTTGCCGCCGGC---GC---A---------GCG---------T------CTGACGAC---------GAA---------------GACGATGA---------CGATGAGGACG------ATGAATATG---ATGA------TGATGATGGTGATGATGATGATATTGATGATGGAGTCGATGAA---------ATTACAGGTGCGCTGACAGGTGACGA---CGAGGAGTCTGACGACGATGACGATGATGACGAC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.......................................................................................................................................................................................................................................................................................................GATGGTGATGATGATGATATTGATGATGGAGT...............................................................................	32	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................GACGACGATGACGATGATGACG..	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................CG------ATGAATATG---ATGA------TGAT...............................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................ATGATGGTGATGATGATGATA............................................................................................	21	2	0.50	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................ACG------ATGAATATG---ATGA------TGATA..............................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................GACGATGA---------CGATGAGGACG------ATG......................................................................................................................................	22	3	0.33	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................GATGACGATGATGACGAC	18	7	0.29	2	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................TCTGACGACGATGACGAG.........	18	4	0.25	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................G------ATGAATATG---ATGA------TGATA..............................................................................................................	19	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................GACGACGATGACGATGATGA....	20	10	0.10	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AT------------CTAGTCGTCAGC------ACCGCTCCGGCGCAGTCGG---CGGTGGGCGCTG---TGGGC-------------------------------GTGTCAGCGGGGCCGATCGCAGCGCCTGCTGCTGGT-------ATTAGTGGCGCCGGT---GC---A---GCGTCTGAT---------G---ACGAAGACGAC---------GAC---------------GACGACGA---------CGAGGACGAT---------GAATATG---ATGA------TGATGATGATGGTGGTGATGATATTGATGATGGAGTCGATGAA---------ATTACAGGTGCGC---TGACAGGTGACGACGAGGAGGC---TGACGACGACGAAGATGACGAT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..........................................................................................................................................................................................................................................................................................................................TTGATGATGGAGTCGATGAA---------ATTA...........................................................	24	1	1.00	1	0	1	0	0	0	0

droGri2

ACAAT---------TTAATTGTCGGC------ACTGCTCCGGCCCAGCAAG---TAGTGGGCGTGG---CAG-T-------------------------------GGGAC-----AGCCACTTGCAGCGCCCGCTGCTGCT-------AATGCTGGTGCCGGT---GC---A---------------------------GCGTCCGACGAT------GAT---------------GACTATGACGA------CGAGGACGAT---------GAATATG---ATGA------TGATGATTATAGTGATGATGATATTGATGAAGGAGTCGATGAA---------ATTACAGGTGCGCTGACAGGTGACGACGAGGAGGCTGA---CGACGATGATGATGACGATGAC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
....................................................................................................................................................................................................................................................................................................................................................................................................GATGATGATGACGATGAC	18	20	0.05	1	1	0
.................................................................................................................................................................................................................................................................................................................................................................................................GACGATGATGATGACGAT...	18	20	0.05	1	1	0

droAna3

ACAACAACAACAATGTGGTGGGCGGTGG---TGCGATCTTGGGGCAAGCGG---CGACACCTGTTG---CAGAT-------------------------------A---T---------TGCCAC------TGC-CCCGGGAGCG---GGCGCTGCTGCCACC---AC---T---------GCC---------G---ACACTGACGCT---------GAC---GACGATTTGTACGATGATGA---------CGAGGACGCGG------AGGACGATG---GGGA------GGAAGATGATGATGATGATGATATTGATGATGGAGTCGATGAAATTGGTGAAATTGCAGGTATCG---CCGGCGACGACGACGAGGAGGG---CGACGATGATGATGAGGACGAC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.........................................................................................................................................................................................................................................................................................................................................................................................AGGG---CGACGATGATGATGAGG.....	21	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................CGACGATGATGATGAGGA....	18	7	0.71	5	0	0	0	0	2	3
.......................................................................................................................................................................................................................................................................................................GATGATGATGATGATGATATT..........................................................................................	21	3	0.67	2	0	0	0	0	0	2
....................................................................................................................................................................................................................................................................................................GAAGATGATGATGATGAT................................................................................................	18	19	0.05	1	0	0	0	0	0	1

droBip1

AC------------TTGGTGGCCGGTGGTGCAACAATCTTGGGGCAACCGG---CGACACCTGTTG---CCGGA-------------------------------GAGGTTGCAGGAATAGCTGC------TG-TCCCGGGAGCGGGCGCTACTGCCACTGAC---GC---C---------------------G---ACACTGACGACGCGGACGACGATGACGACGATTTG------TA------------CGATGATGAC---------GAGGACG---AAGAGGACGAAGAGGACGATGATGATGATGATATTGATGATGGAGTCGATGAAATTGGTGATATTGCAGGTATCG---CCGGCGATGACGACGAGGAAGG---CGACGATGATGATGAGGACGAC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AT------------CTGGTGGCCAGTGC---GGCGACCTTGGGGCCACTTGCCACACCAGGTGTGG---CAGGT-------------------------------G---T---------------------TGCTCCGGGG-------ATAGTTGCCACTGGCGCCAC---C---------GAC---------A---ACACTGACAAC---------AAC---------------GACGACGACGA------CGAGGACGACGAGTATGATGATGACGAGGACGA---------GGACGATGATGATGATGATATTGATGATGGAGTCGATGAAATTGGTGATATTACAGGTATCG---CCGGTGCCGATGACGAGGAGGC---CGATGATGATGATGACGACGAC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AG------------CTGGTGGCCAGTGGGACGACGACCTTGGGGCAACAGCCGGCAGCAGTTGTTGTTGCAGGC-------------------------------AATGT---------------------TGCTCCGGGG-------AATGTTGCCCCTGGC---GC---CGGCA------AT---------G---ACATAGACAAC---------GCT---------------GACGATGA---------CGATTATGAT---------GAGGACGACGACGAGGACGATGATGATGATGATGGTGATGATATTGATGATGGAGTCGATGAAATTGGTGAAATTACAGGTATCG---CCGGTGACGACGACGAGGAGGC---CGACGATGATGATGACGATGAC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

---------------TGGTGTCCAGTGC---TACGACCTTGGGGCAACCAG---CAGCACTTGTTG---CCGGT-------------------------------G---T---------------------TGCTCCGGGG-------AGTGTTGCTGCTGGC---AC---C---------GAC---------G---ACACTGACAAC---------GCT---------------GACGATGA---------CGAATATGAT---------GAGGACG---ACGAGGA------CGATGAAGATGATGATGATATTGATGATGGAGTCGATGAAATTGGTGAAATTACAGGTATCG---CCGGTGATGACGACGAGGAGGC---CGACGATGATGATGACGATGAC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

---------------TGGTGGCCAGTGG---TGCGACCTTGGGGCAACCTG---CAACACTTGTTG---CCGGT-------------------------------G---T---------------------TGCTCCGGGG-------GGTGTTGCTGCTGGC---AC---C---------GAC---------G---ACACTGACAAC---------GCT---------------GACGATGA---------CGATTATGAT---------GAGGACG---ACGAGGA------CGATGATGATGATGATGATATTGATGATGGAGTCGATGAAATTGGTGAAATTACAGGTATCG---CCGGTGATGACGACGAGGAGGC---CGACGATGATGATGACGATGAC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AG------------CTGGTGGCCAGTGG---GACGACCTCGGGGCAACCGG---CAACACTTGTTG---CCGGT-------------------------------G---T---------------------TGCTCCCGGG-------AGTGTTGCCGCTGGC---AC---C---------GACAACGATAACAACGACACGGACAAC---------GTA---------------GACGATGA---------CGATTATGAT---------GAGGACG---ACGAG---------GACGATGATGATGATGATATTGATGATGGAGTCGATGAAATTGGTGAAATTACAGGTATCG---CCGGTGACGATGACGAGGAGGC---CGACGATGATGATGACGATGAC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

---------------TGGTGGCCAGTGG---AACGACCTTGGGGCAGCCGG---CGACACATGTTG---CCGGT-------------------------------G---T---------------------TGCTCCCGGG-------AATGTTGCTGCTGGC---AC---CGACAAC---AAC---------G---ACATTGACAAC---------GCC---------------GACGATGA---------CGATTATGAG---------GACGACG---ACGAGGA------CGATGATGATGATGATGATATTGATGATGGGGTCGATGAAATTGGTGAAATTGCAGGTATCG---CCGGTGACGATGACGAGGAGGC---CGACGATGATGATGACGATGAC	Size	Hit Count	Total Norm	Total
No Reads

droEug1

---------------TGGTGACCAGTGG---GACGACCTTGGGGCAACCGG---CAACACTTGTTGCTGCCGGT-------------------------------GTTGT---------------------TGCTCCGGGG-------AATGTTGCTGCTGGC---AC---C---------GTT---------G---ACACGGACAAC---------GCT---------------GACGATGA---------CGAATATGAT---------GAGGACG---ACGAG---------GACGATGATGATGATGATATTGATGATGGAGTCGATGAAATTGGTGAAATTGCAGGTATCG---CCGGTGACGACGACGAGGAGGC---CGACGATGATGATGACGATGAC	Size	Hit Count	Total Norm	Total
No Reads

dm3

AG------------CTGGTGGCCAGTGG---GACGACCTTGGGGCAACCCG---CGGCAGTTGTTG---CAGGT-------------------------------GCGGT---------------------TGCTCCCGGG-------AATGTTGCCGCTGGC---GC---C---------GAT---------G---ACACTGACAAC---------------------------GACGATGA---------CGATTATGAT---------GAGGACG---ACGAGACC---GATGATGATGATGATGATGATATTGATGATGGAGTCGATGAAATTGGTGAAATTACAGGTATCG---CCGGTGACGACGACGAGGAGGC---CGACGATGATGATGACGATGAC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
......................................................................................................................................................................................................................................................................................................TGATGATGATGATGATGATA............................................................................................	20	20	11.35	227	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	19	5	0	3	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	6	6	1	64	0	0	0	3	0	0	1	0	3	0	0	1	1	7	0	0	0	0	6	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	5	6	23	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	1	5	0	0	0	0	0	0	0	0	0	0	0	15	12	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................ACGATGATGATGACGATGAC	20	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.................................................................................................................................................................................................................................................................................................................................TGGAGTCGATGAAATTGGTGAA...............................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.....................................................................................................................................................................................................................................................................................................................................................................................GAGGAGGC---CGACGATGATGATGA.......	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................G---CCGGTGACGACGACGAGGAG...........................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................ATGATGATGATGATGATG...............................................................................................	18	20	0.85	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................ACGATGATGATGACGATG..	18	4	0.75	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................ACGATGATGATGACGATGA.	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................GATGATGATGATGATGATGAT.............................................................................................	21	20	0.50	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................GACGACGAGGAGGC---CGACGATGAG............	24	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................TGATGATGATGATGATAT...........................................................................................	18	10	0.50	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................GATGATGATGATGATGATGATA............................................................................................	22	15	0.47	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................CGATGATGATGACGATGA.	18	12	0.25	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................GTGACGACGACGAGGAGA..........................	18	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................GATGATGATGATGATGATA............................................................................................	19	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................CC---GATGATGATGATGATGATG...............................................................................................	21	11	0.18	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................GACGATGATGATGACGA....	17	12	0.17	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................ACGATGATGATGACGAT...	17	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................C---GATGATGATGATGATGATGA..............................................................................................	21	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................ATGATGATGATGATGATA............................................................................................	18	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................GATGATGATGATGATGATG...............................................................................................	19	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................GATGATGATGATGATGAT.............................................................................................	18	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................ATGATGATGATGATGATAT...........................................................................................	19	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................C---GATGATGATGATGATGA.................................................................................................	18	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................C---GATGATGATGATGATGATGAT.............................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

AG------------CTGGTGGCCAGTGG---GACGACCTTGGGGCAACCGT---CGGCAGTTGTTG---CAGGT-------------------------------GCGGT---------------------TGCTCCCGGG-------AATGTTGCCGCTGGC---GC---C---------GAC---------G---ACACTGACAAC---------------------------GACGATGA---------CGATTATGAT---------GAGGACG---ACGAGAC------CGATGATGATGATGATGATATTGATGATGGAGTCGATGAAATTGGTGAAATTACAGGTATCG---CCGGTGACGACGACGAGGAGGC---CGACGATGATGATGACGATGAC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
................................................................................................................................................................................................................................................................................................................................................................................................CGACGATGATGATGACGATGAC	22	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................AACCGT---CGGCAGTTGTTG---CAGGT-------------------------------G............................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................GATGGAGTCGATGAAATTGG...................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................CGATGATGATGACGATGAC	19	2	1.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................ATGATGATGATGATGATATT..........................................................................................	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................ATGATGATGATGATGATA............................................................................................	18	19	0.58	11	0	0	0	0	0	0	0	0	0	0	11	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................ATGATGATGATGATG...............................................................................................	15	20	0.50	10	0	0	0	0	0	0	0	0	0	0	10	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................GATGATGATGATGATGATAT...........................................................................................	20	5	0.20	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................GATTATGAT---------GAGGAA.................................................................................................................................	15	20	0.15	3	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................GATGATGATGATGATGATA............................................................................................	19	17	0.06	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................CAGGTATCG---CCGGTTC........................................	16	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0

droSec2

AG------------CTGGTGGCCAGTGG---GACGACCTTGGGGCAACCGT---CGGCAGTTGTTG---CAGGT-------------------------------GCGGT---------------------TGCTCCCGGG-------AATGTTGCCGCTGGC---GC---C---------GAC---------G---ACACTGACAAC---------------------------GACGATGA---------CGATTATGAT---------GAGGACG---ACGAGACC---GATGATGATGATGATGATGATATTGATGATGGAGTCGATGAAATTGGTGAAATTACAGGTATCG---CC-GTGACGACGACGAAGAAGC---CGACGATGATGATGACGATGAC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..........................GG---GACGACCTTGGGGCAACC.....................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0

droYak3

AA------------CTGGTGGCCAGTGG---GCCGACCTTGGGGCAACCGGCGGCGACAGGTGTTG---CAAGT-------------------------------GGGGT---------------------TGCCCCCGGG-------AATGTTGCCGCTGGC---GC---C---------GAC---------G---ACACTGACAAC---------GAC---------------GACGATGA---------CGATTATGAT---------GAGGACG---ACGAGACC---GATGATGATGATGATGATGATATTGATGATGGAGTCGATGAAATTGGTGAAATTACAGGTATCG---CCGGTGACGACGACGAGGAGGC---CGACGATGATGATGACGATGAC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................CGACGATGATGATGACGAT...	19	2	7.50	15	0	7	0	0	0	0	8	0	0	0	0
...........................................................................................................................................................................................................................................GACGATGA---------CGATTATGAT---------GAGGACG---A............................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................CGACGATGATGATGACGATG..	20	2	1.00	2	0	0	0	0	0	0	2	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................CGACGATGATGATGACGATGA.	21	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................GACGATGATGATGACGATG..	19	6	0.33	2	0	0	0	0	0	0	2	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................CGACGATGATGATGACGA....	18	9	0.22	2	0	2	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................GATGATGATGATGATGATA............................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0

droEre2

AG------------CTGGTGGCCAGTGG---GACGACCTTGGGGCAACCGG---CGACAGGTGTTG---CAAGT-------------------------------GGGGT---------------------TGCTCCCGGG-------AATGTTGCCGCTGGC---GC---C---------GAC---------G---ACACTGACAAC---------------------------GACGATGA---------CGATTATGAT---------GAGGACG---ACGAGAC------CGATGATGATGATGATGATATTGATGATGGAGTCGATGAAATTGGTGAAATTACAGGTATCG---CCGGCGACGACGACGAGGAGGC---CGACGATGATGATGACGATGAC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................CGACGATGATGATGACGATGA.	21	2	2.50	5	1	0	0	0	2	2	0
........................................................................................................................................................................................................................................................................................................................................................................CGGCGACGACGACGAGGAGGC---......................	21	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................CGACGATGATGATGACGATG..	20	2	0.50	1	0	0	0	0	1	0	0
................................................................................................................................................................................................................................................................................................................................................................................................CGACGATGATGATGACGAT...	19	3	0.33	1	0	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................CGATGATGATGACGATGA.	18	11	0.27	3	1	0	0	0	0	2	0
.................................................................................................................................................................................................................................................................................................................................................................................................GACGATGATGATGACGAT...	18	8	0.13	1	0	0	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................ATGATGATGATGATGATA............................................................................................	18	20	0.10	2	0	0	0	0	0	2	0

dps_3105

XR_group6:8581631-8581781 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-25.0	-24.8	-24.8