ID:

dps_3104

 Coordinate:

XR_group6:8608129-8608406 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dpse\GA16644-cds]; exon [dpse_GLEANR_12295:4]; CDS [Dpse\GA16644-cds]; exon [dpse_GLEANR_12295:5]; intron [Dpse\GA16644-in]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ACCTGGATGTGCGCATGAAGGCGGTCCTCCTCGGCGCCACATTCTTGATTGTAAGTAGTTCCGTTGCTGACGCTGAGGCTTGCCGCTCTAATCGATGAAATGGGCTTGCCACAACTCAGTTGTACAGCGTTCACTTCTGTCGGCCCAAGATTGCGAAGCGGTTGCGACGCAGGCTTCGTTGGTGCTGAGGTAAGGTCGTTGTGCGCCCAGCCCGATCCAGTCCAAGTCCAGCTTTGTTCGATTAGGCTAGCCCCGCTCCGCTCCGCATTGCAACCGATCAACCGATCAGACTTACTAATGTGAATCTTTCCCTGCCTTTGCCCCCCAGGATGCAATGTTCTTTGAGAAGTCCGGCAACCGAGAGACCGACGGACCCGG
**************************************************.......(((.((.(((.((.((.(((....((.((.((((((((((((.((((((((.......((.(((((((((((....(((...((((((((.....(((((((..((((...)))))))))))))).)))))...)))..)))))))))....))..)).......))))))))..)))).))))))))))..))....))).)))).))).)).))).((((....))))(((.((((....)))).))).....................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 M022
male body		 V112
male body		 M062
head
 M059
embryo
 GSM444067
head
 GSM343916
embryo
 SRR902012
CNS imaginal disc
.............................................................CATTACTGACGCTGAGGC........................................................................................................................................................................................................................................................................................................... 18 2 4 130.75 523 424 93 3 3 0 0 0 0
.............................................................CATTACTGACGCTGAGGCG.......................................................................................................................................................................................................................................................................................................... 19 3 12 83.50 1002 983 12 5 0 0 2 0 0
..............................................................GTAACTGACGCTGAGGCT.......................................................................................................................................................................................................................................................................................................... 18 2 14 35.43 496 270 190 7 4 0 21 4 0
............................................................TCATTACTGACGCTGAGGC........................................................................................................................................................................................................................................................................................................... 19 3 20 17.95 359 354 4 1 0 0 0 0 0
..............................................................GTAACTGACGCTGAGGCTCG........................................................................................................................................................................................................................................................................................................ 20 3 8 17.13 137 119 1 16 0 0 1 0 0
...............................................................TTACTGACGCTGAGGCGCG........................................................................................................................................................................................................................................................................................................ 19 3 13 4.46 58 58 0 0 0 0 0 0 0
...........................................................TCTGTAACTGACGCTGAGGCT.......................................................................................................................................................................................................................................................................................................... 21 3 20 3.35 67 55 3 9 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................................GAAGTCCGGCAACCGTGAGACC........... 22 1 1 3.00 3 2 0 0 0 1 0 0 0
...............................................................................................................................................CCCAAGCTTGCGTCGCGG......................................................................................................................................................................................................................... 18 3 20 1.50 30 30 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................AATGTTCTTTGAGAAGTCCGGCAACCGA................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................GGTCCGTAACTGACGCTGAGGCT.......................................................................................................................................................................................................................................................................................................... 23 3 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................GTTCTGTAACTGACGCTGAGG............................................................................................................................................................................................................................................................................................................ 21 3 1 1.00 1 0 1 0 0 0 0 0 0
................................GGCGCCACATTCTTGATTGATG.................................................................................................................................................................................................................................................................................................................................... 22 3 1 1.00 1 0 0 0 1 0 0 0 0
........................................................................................................................................................................................................................................................................................................................................GATGCAATGTTCTTTGAGAAGTCC.......................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................GTTCTGTAACTGACGCTGAGGCT.......................................................................................................................................................................................................................................................................................................... 23 3 1 1.00 1 0 0 0 1 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................GTTCTTTGAGAAGTCCGGC....................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................CGTTACTGACGCTGAGGC........................................................................................................................................................................................................................................................................................................... 18 1 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................GTTCTGTAACTGACGCTGAGGC........................................................................................................................................................................................................................................................................................................... 22 3 1 1.00 1 0 0 0 1 0 0 0 0
........................................................................................................................................................................................................................................................................................................................................GATGCAATGTTCTTTGAG................................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................AATGTTCTTTGAGAAGTCCGG........................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................................AAGTCCGGCAACCGAGAGAC............ 20 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................................GGAGTCCGGCAACCGTGAGACC........... 22 2 1 1.00 1 0 0 0 0 1 0 0 0
......................................................................................................................................................................................................................................................................................................................................TTGATGCAATGTTCTTTGAGA............................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0
............................................................TCATTACTGACGCTGAGG............................................................................................................................................................................................................................................................................................................ 18 3 20 0.90 18 18 0 0 0 0 0 0 0
.............................................................CATTGCTGACGCTGAGGC........................................................................................................................................................................................................................................................................................................... 18 1 2 0.50 1 1 0 0 0 0 0 0 0
.............CATGAAGGCGGTCCTCCTCGG........................................................................................................................................................................................................................................................................................................................................................ 21 0 2 0.50 1 1 0 0 0 0 0 0 0
.............................................................CATTACTGACGCTGAGGCT.......................................................................................................................................................................................................................................................................................................... 19 2 2 0.50 1 1 0 0 0 0 0 0 0
..............ATGAAGGCGGTCCTCCTCGGCGC..................................................................................................................................................................................................................................................................................................................................................... 23 0 2 0.50 1 0 0 0 0 0 0 1 0
.............................................................CGTAACTGACGCTGAGGCT.......................................................................................................................................................................................................................................................................................................... 19 2 3 0.33 1 0 0 1 0 0 0 0 0
............................................................CCATTACTGACGCTGAGGC........................................................................................................................................................................................................................................................................................................... 19 2 3 0.33 1 1 0 0 0 0 0 0 0
....GGATGTGCTCATGAAGTCG................................................................................................................................................................................................................................................................................................................................................................... 19 2 3 0.33 1 1 0 0 0 0 0 0 0
....GGATGTGCTCATGAAGTCGCT................................................................................................................................................................................................................................................................................................................................................................. 21 3 8 0.25 2 2 0 0 0 0 0 0 0
.............................................................CATTGCTGACGCTGAGGCG.......................................................................................................................................................................................................................................................................................................... 19 2 5 0.20 1 1 0 0 0 0 0 0 0
............................................................CCGTAACTGACGCTGAGGCTC......................................................................................................................................................................................................................................................................................................... 21 3 5 0.20 1 1 0 0 0 0 0 0 0
..............................................................GTAACTGACGCTGAGGCTCGC....................................................................................................................................................................................................................................................................................................... 21 3 5 0.20 1 0 0 0 0 0 1 0 0
.............................................................CGTAACTGACGCTGAGGC........................................................................................................................................................................................................................................................................................................... 18 2 5 0.20 1 0 0 0 0 0 0 0 1
...........CGCATGAAGGAGGTCCACTTC.......................................................................................................................................................................................................................................................................................................................................................... 21 3 7 0.14 1 0 0 0 0 0 0 1 0
...TGGATGTGCTCATGAAGTCGC.................................................................................................................................................................................................................................................................................................................................................................. 21 3 9 0.11 1 1 0 0 0 0 0 0 0
...........................................................TCTGTAACTGACGCTGAGGC........................................................................................................................................................................................................................................................................................................... 20 3 20 0.10 2 0 2 0 0 0 0 0 0
...........................................................TCTGTAACTGACGCTGAGG............................................................................................................................................................................................................................................................................................................ 19 3 20 0.10 2 0 0 0 0 0 0 0 2
............................................................TCATTACTGACGCTGAGGCT.......................................................................................................................................................................................................................................................................................................... 20 3 12 0.08 1 1 0 0 0 0 0 0 0
.............................................................CATTGCTGACGCTGAGGCGC......................................................................................................................................................................................................................................................................................................... 20 3 14 0.07 1 1 0 0 0 0 0 0 0
...........................................................TCTGTAGCTGACGCTGAGGCTC......................................................................................................................................................................................................................................................................................................... 22 3 20 0.05 1 1 0 0 0 0 0 0 0
..............................................................ATTACTGACGCTGAGG............................................................................................................................................................................................................................................................................................................ 16 2 20 0.05 1 0 0 0 0 0 0 0 1
..............................................................GTAACTGACGCTGAGG............................................................................................................................................................................................................................................................................................................ 16 2 20 0.05 1 0 0 0 0 0 0 0 1
.....................................CATATGCTTGATTGTGAGT.................................................................................................................................................................................................................................................................................................................................. 19 3 20 0.05 1 1 0 0 0 0 0 0 0

Anti-sense strand reads

TGGACCTACACGCGTACTTCCGCCAGGAGGAGCCGCGGTGTAAGAACTAACATTCATCAAGGCAACGACTGCGACTCCGAACGGCGAGATTAGCTACTTTACCCGAACGGTGTTGAGTCAACATGTCGCAAGTGAAGACAGCCGGGTTCTAACGCTTCGCCAACGCTGCGTCCGAAGCAACCACGACTCCATTCCAGCAACACGCGGGTCGGGCTAGGTCAGGTTCAGGTCGAAACAAGCTAATCCGATCGGGGCGAGGCGAGGCGTAACGTTGGCTAGTTGGCTAGTCTGAATGATTACACTTAGAAAGGGACGGAAACGGGGGGTCCTACGTTACAAGAAACTCTTCAGGCCGTTGGCTCTCTGGCTGCCTGGGCC
**************************************************.......(((.((.(((.((.((.(((....((.((.((((((((((((.((((((((.......((.(((((((((((....(((...((((((((.....(((((((..((((...)))))))))))))).)))))...)))..)))))))))....))..)).......))))))))..)))).))))))))))..))....))).)))).))).)).))).((((....))))(((.((((....)))).))).....................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902012
CNS imaginal disc
 GSM444067
head
 SRR902011
testis
 M022
male body
............................................................................CCGAACGGCCAGACTAGCT........................................................................................................................................................................................................................................................................................... 19 2 1 1.00 1 1 0 0 0 0
.......................................................................................................................................................................................CGAGTCCATTCCTGCAACACA.............................................................................................................................................................................. 21 3 2 0.50 1 0 0 1 0 0
..........................................................................................................................................................................................................CGCGGGTCGGGCTAGGGCC............................................................................................................................................................. 19 2 2 0.50 1 1 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................GGGGTCCTACGCTAC......................................... 15 1 12 0.42 5 0 5 0 0 0
............................................................................................................................................................................................................CGGGTTTGGCTAGTTCAGGT.......................................................................................................................................................... 20 3 9 0.22 2 0 0 0 2 0
.......................................................................................................CGAAGAGTGTTGGGTCAAC................................................................................................................................................................................................................................................................ 19 3 7 0.14 1 0 0 0 0 1
..................................................................................................................................................................................................................................................................................................................................................AGAAAGCCTTCAGGCCGTTA.................... 20 3 7 0.14 1 0 1 0 0 0
..........................GAGGAGCCGAGGTGTAGG.............................................................................................................................................................................................................................................................................................................................................. 18 2 15 0.13 2 2 0 0 0 0
........................................................TCGAGGCAACGACTGTAAC............................................................................................................................................................................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................GGGCCGAAGTTACAAGAAA................................... 19 3 20 0.05 1 1 0 0 0 0
..........................................................................................................................................CAGTCGGGTTCTAAAACTT............................................................................................................................................................................................................................. 19 3 20 0.05 1 1 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................CGGGGTCCTACGTTACTCG...................................... 19 3 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 XR_group6:8608079-8608456 - dps_3104 ACCTGGATGTGCGCATGAAGGCGGTCCTCCTCGGCGCCACATTCTTGATTGTAAGTAGT-TCCGTTGCTGACGCTGA-----------------GGC------------------TTGCCGCTCTAATCGATGAAATGG-GCT-TGCCACAACTCAGTTGTACAGCGTTCACTTCTGTCGGCCCAAGATTGCGAAGCGGTTGCGACGCAGGCTTCGTTGGT-GCTGAGGTAAGGTCGTTGTGCGCCCAGCC-CGATCCAGTCCAAGTCCAGCTTTGTT-CGATTAGGCTAGCC---CCGCTCCG-CTCCGC--A---------TTGCAAC---C---GATCAACCGATCAGACTTACTAATGTGAA---------TCTTT--CCCT--------------G--CCTTTGC---CCCCCAGGATGCAATGTTCTTTGAGAAGTCCGGCAACCGAGAGACCGACGGACCCGG
droPer2 scaffold_27:1048178-1048558 - ACCTGGATGTGCGCATGAAGGCGGTCCTCCTCGGCGCCACATTCTTGATTGTAAGTAGT-TCCGTTGCTGACGCTGA-----------------GCC------------------TGGCCGCTCTAATCGATGAAATGG-GCT-TGCCACAACTCAGTTGTACAGCGTTCACTTTGGTCGGCCTAAGATTGCGAAGCGGGTGCGACGCAGGCTACGTTGGT-GCTGAGGTAAGGTCGTTGTGCGCCCAGCC-CGATCCAGTCCAAGTCCAGCTTTGTT-CGATTAGGCTAGCC---CCGCACCG-CTCCGC--G--TTG-CAA------C---C---GATCAACCAATCAGACATACTAATGTGAA---------TCTTT--CCCT--------------G--CCTTTGCCCCCACCCAGGATGCAATGTTCTTTGAGAAGTCCGGCAACCGAGAGACCGACGGACCCGG
droWil2 scf2_1100000004837:451222-451290 + TCTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---T--------------CTC----AC----------------------------------------------------T---TTTTCAGGATGCCATGTTCTTTGAGAAATCTGGTAACCGTGAATCCGATGGACCCGG
droVir3 scaffold_13049:15991227-15991570 - dvi_20142 ACTTGGATGTTCGCATGAAAGCCGTGCTGTTGGGAGCCACTTTTCTCATTGTAAGCAGC-TGCATTTGTTATTTCAT-----------------CGC------------------AAGTTTCACTAACCGCAC--ATTTGCA--TG------TTAAGTCGTACAGCATTCATTTCTTTCGTTTACAAATTATGAGTTGTCTGCATCGCAGATTTCGTTGGT-GCCGAGGTAAAACTT--ATCTTATGAGCC-C-TAACAACGC---CCCAGCTTCTTT-TGATTGTGCTAGAG---CATCACCA-----------CACGTCGAGTCAT-T---T--------------CAC----TTTGTT---AACCTACTGATTTTGT-----------------------------T---TCTTTAGGATGCCATGTTCTTTGAGAAGTCCGGAAACCAGGAGACCGATCGTCCAGG
droMoj3 scaffold_6680:20792188-20792477 + ATTTGGATGTACGCATGAAAGCCGTGCTGCTAGGCGCCACGTTCCTCATTGTAAGCACG-AGCTTTT--------------------------------------------------------GTTATTTAAT--CCCACAATCAGAT---ATTAAATCACCCAGAATTCATTGCTTTTCGCCTTAATTCAAAAGTTG-ATATATTGCGGGAATTGTCGGTAGCAGAAG--------------------CC------------------------------------CCAACG---CAGAGTCAACTCTTT--TACTGA-TTTGTA----------------------------------T--------------TGAAT--GATTTCTGACCTCACTTAT--TTATTTT---CTTTCAGGATGCCATGTTCTTTGAGAAGTCTGGCAACCGCGAGGGAGATACTCCAGG
droGri2 scaffold_15110:12668499-12668847 + ATTTGGATGTACGCATGAAAGCCGTGCTGCTTGGCGCCACGTTCCTCATTGTAAGCAAC-CTCAATTTTAATTAT------------------------------------------ATAGCAAATTTGAAAC--ACTAAT--CGCAC---ATTCAGTCGTACAGCATTCATTTCTTTCGCCTTAAACTCATGAGTCGTCTGCATCGCAGACTTCGTTGGC-GTTGAGGTAAAACTT--TACTAATATACCCC-ATCACAAT----CCGAGCTTACTC-TGAATATGCTAGAT---AATAAGCATTTTCCA--TAATAC-TGAATCAT-T---T--------------CAA----ATTGAT---AA---------TCTTT--GTATT-------------T--CATT--T---ATTTTAGGATGCAATGTTCTTTGAAAAGAGCGGCAATCGGGAGACTGATCGTCCAGG
droAna3 scaffold_13337:15125369-15125425 - ATCTGGATGTCCGCATGAAGGCGGTTCTCTTGGGAGCCACATTCCTGATCGTAAGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000394330:27294-27353 + ATCTGGATGTACGCATGAAGGCGGTTCTCTTGGGAGCTACATTCCTGATTGTAAGTAGC-T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302334:217854-218212 + ATTTGGATGTGCGCATGAAGGCGGTGTTGCTGGGCGCCACATTCCTGATTGTAAGTAGT-TTTAATAATATTATTTATATATATATAAAATATAGATTATAAATTAATATTAATATTATTC----------------TGG------------TTCAGTTGTATTCTGTTAACTTTTATCGATTCAAGCTGGGGCGGCAACTGCAACGCAGATTATGTTGAA-GCTGAGGTAACTTCATGGAA------------------------CCCAGCTTAGTT-TGCGTAGGCTAAACCCCCAGCTAAAGGTCTTTTTGTTCAT-TAAAATGTAC------------------CCC----ACTAAT--------------CAT-T--ACT-----------CTTTT--TCTCTTT---CTTTAAGGATGCCATGTTCTTTGAGAAACAAGGCAACCAGGAGACAGATCGCCCTGG
droFic1 scf7180000453841:848258-848606 + ATCTGGATGTGCGCATGAAGGCCGTTCTGCTGGGCGCCACATTCCTGATTGTAAGTGCCGCTCC-CTC----GGTTA-----------------AAT------------------TTATT-TTGTAATTCATA--TATGGCCT-TGCC---AATCAGTTGTATAGTGTTAACTTTTATCGGTTAAAGCTGTTGAGACGTCTGAGGCGCAGATTTCGTTGGT-GCTGAGGTAACTGA---AACCCCCAAGCC-C-ATCAAATCC---TCCAGCTT--CT-TGGTTAGGCTAGTT---CAGCTATAGGTCCTT--GAACCT-TATGATTTAC---C--------------AAC----ACTAAG--------------TTTAT--ACCTT----------------TTTTTGC---TCCGCAGGATGCCATGTTCTTCGAGAAGTCTGGAAACCGCGAGACTGATGGACCCGG
droEle1 scf7180000490564:1032825-1033178 - ACTTGGACGTGCGCATGAAGGCCGTATTGCTGGGGGCCACATTCCTCATCGTAAGTGGT-TTCCTTT-----GGTTA-----------------GAG------------------TTACA-TAGTAATCCAAC--GTTGGCCTCTGCC---ACACAGTTGTATAGCGTTCACTTTTATCGATTCAAGCTGTTGAGGCGTCTGCAGCGCAGATTTCGTTGGT-GCTGAGGTAACATTT--AAGCCCCCAGCC-C-ATCAAATCC---TCCAGCTTAGTT-TGAGTAGGCTAACC---CAGCTGCAGCTCCGT--GATCTG-TATCCGCATC---T--------------CAG----ACTAAT--------------TGTGTGTGC-TT-------------C--TCTCTGT---CCCACAGGATGCCATGTTCTTTGAGAAGTCTGCCAACCAGGAAACCGATAGACCCGG
droRho1 scf7180000780105:184076-184428 + ACCTGGATGTGCGCATGAAGGCCGTTTTGCTGGGTGCCACATTCCTCATTGTAAGTGCT-TCCCTTC-----GCTTA-----------------GAT------------------TTATC-TAGTAACCCAAC--GTTGGCCCCTGCC---AATCAGTTGTATAGCGTTCATTTCTATCGATTCAAGCTGTTGAGGCGTCTGCAGCGCAGATTTCGTTGGT-GCTGAGGTAACATAT--TATCCCCCAGCC-C-ATCAAATCC---TCCAGCTTAGTT-TGAGTAGGCTAGCC---ATGCTATAGTTCCTA--CATCTG-TTAAATTAAA---T--------------CCG----ACTAAT--------------TAAGT--GCTTT-------------C--CTTTTGA---TCCACAGGATGCCATGTTCTTTGAGAAGTCCGGCAACAGGGAGACCGATAGACCCGG
droBia1 scf7180000302428:7541737-7542086 + ACCTGGATGTGCGCATGAAGGCCGTGCTGCTGGGCGCCACATTCCTGATTGTAAGTGGT-TTAATTC-----GGTCA-----------------TAT------------------TTGCT-TGGTAACCCCAT--GTTGGCTCCTGCC---AATCAGTTGTATAGTGTTCATTTTTATCGGTTCAAGCTGTTGAGGCGTCTGCAGCGCAGATTTCGTTGGT-GCTGAGGTAAAACAG--AGTTCCCCAGTC-C-ATCGACTCC---TCCAGCTTAGTT-CGAGTAGGCTAGCC---CTGCATCAGGTCCTT--AATTCC-TAAATAATAC---A--------------CAT----GCTAAC--------------GATAT--AT--T-------------T--T-TTTTA---CCCACAGGACGCCATGTTCTTCGAGAAGTCTGGAAACCAAGAAACCGACAGACCCGG
droTak1 scf7180000415209:246339-246690 - ACTTGGATGTGCGCATGAAGGCCGTTCTCCTGGGCGCCACCTTCCTGATTGTAAGTGCT-TCGTTTTC----GTTTA-----------------GTT------------------TTGCC-TAGTAACACATA--GTTGGCTCCTGCC---AATCAGTTGTATAGTGTTCATTTCTATCGGTTCAAGCTGTTGAGACGTCTGCAGCGCAGATTTCGTTGGT-GCTGAGGTAATTTA---AATCCCCCAGCC-C-ATCAAATCC---TCCAGCTTAGTT-TGAGTAGGCTAGCC---CGGCATAAGGTCCTT--AATCCG-TAAAAGTTAT---C--------------TCA----ACTGAT--------------TGTGT--GCTTT-------------C--T-CTTCC---CCCACAGGATGCCATGTTCTTTGAGAAGTCCGGAAACCAGGAAACCGACAGACCCGG
droEug1 scf7180000409711:2069865-2070221 - ACTTGGACGTGCGCATGAAGGCCGTTCTGCTGGGCGCCACATTCCTGATTGTAAGTGAT-ATATTTTA----AATTA-----------------GAT------------------TTACC-TAATAACCCATC--GTTGGCCTCGGCC---AATCAGTTGTATAGTGTTCATTTCTATCGGTTCAAGCTGTTGCGACGTTTGCAGCGCAGATTTCGTTGGT-GCTGAGGTAATGTG---AATCCCCCAGCC-C-ATCAAATCC---TCCAGCTTAGTTTTTAGTAGGCTAGCC---GAGCTTTAAGACCTT--TAAACG-TGTATGGTAC---T--------------CAG----ACTAAT--------------TTTGTTTAT-TT-------------CATTTTTTGC---CCCTCAGGATGCCATGTTCTTTGAGAAGTCTGGAAACCAAGAGACCGATAGACCAGG
dm3 chr3L:10214183-10214543 - ACTTGGATGTGCGCATGAAGGCCGTTTTGCTGGGTGCCACATTCCTCATAGTAAGTGTT-TTCTTTTC---AGCAAA-----------------GAT------------------TTATTGTAGTTATTTATC--ATTGGCCTCTGCC---AATCAGTTGTATAGTGTTCATTTTTATCGGTTCAAGCTGTTAAGACGTCTGCAACGCAGACTTCGTTGGT-GCTGAGGTAATGTT---GACCCTCCAGCC-C-ATTAAATCC---TCCAGCTTAGTT-TGAGTAGGCTAGTC---CAGCACTAAGTCCTT--CACTCG-TCAATGTTTTCTGTCTG-----------TTT----TCTAAA--------------CGAAT--GCTTT-------------C--TGTTTGC---CCCACAGGATGCCATGTTCTTTGAGAAAGCCGGAAACCAAGAGACCGATAGGCCCGG
droSim2 3l:9959050-9959403 - dsi_26473 ACTTGGATGTGCGCATGAAGGCCGTTCTACTCGGCGCCACATTCCTCATAGTAAGTGCT-TCCCTTC----AGCTAA-----------------GAT------------------TTATTGTAGTTATTTATC--TTTGGCCTCTGCC---AATCAGTTGTATAGTGTTCATTTTTATCGGTTCAAGCTGTTAAGACGTCTGCAACGCAGACTTCGTTGGT-GCTGAGGTAATGTT---AACCCTCCAGCC-T-ATTAAATCC---TGCAGCTTAGTT-TGAGTAGGCTAGTC---CAGCACTAAGTCCTT--CACTCG-TCAATGTTAC---C--------------CAC----ACTAAA--------------TGAAT--GCTTT-------------C--TGTTTGC---CCCACAGGATGCCATGTTCTTTGAGAAAGCCGGAAACCAAGAGACCGATAGGCCCGG
droSec2 scaffold_0:2429563-2429916 - ACTTGGATGTGCGCATGAAGGCCGTTCTACTCGGCGCCACATTCCTCATAGTAAGTGCT-TCCTTTT----AGCTAA-----------------GAT------------------TTATTGTAGTTATTTATC--ATTGGCCTCTGCC---AATCAGTTGTATAGTGTTCATTTTTATCGGTTCAAGCTGTTAAGACGTCTGCAACGCAGACTTCGTTGGT-GCTGAGGTAATGTT---AACCCTCCAGCC-T-ATCAAATCC---GCCAGCTTAGTT-TGAGTAGGCTAGTC---CAGCACTAATTCCTT--CACTCG-TCAATGTTAC---C--------------CAC----ACTTAA--------------TGAAT--GCTTT-------------C--TGTTTGC---CCCACAGGATGCCATGTTCTTTGAGAAAGCCGGAAATCAAGAGACCGATAGGCCCGG
droYak3 3L:10200266-10200620 - dya_759 ACTTGGATGTGCGCATGAAGGCCGTTCTGCTGGGCGCCACATTCCTCATAGTAAGTGTG-CTCTTTTC---AGCTAA-----------------GAT------------------TTATTGTAGTTATTCATC--CTTGGCCTCTGCC---AATCAGTTATATAGTGTTAATTTTTATCGGTTCAAGCTGTTAACGCGTCTGCAGCGCAGATTTCGTTGGT-GCTGAGGTAATGTT---GACCCTCAGGCC-C-ATGAAAACC---TTCAGCTTAGTT-TGAGTAGGCTAGTG---CAGCACTAAGTCCTT--CAATCG-TATATGTTAC---C--------------CAC----ACTAAA--------------TGTAT--GCTTT-------------C--TATTTGC---CCCACAGGATGCCATGTTCTTTGAAAAAGCCGGTAACCGAGAGACCGATGGGCCCGG
droEre2 scaffold_4784:10203052-10203406 - ACTTGGATGTGCGCATGAAGGCCGTTCTGCTGGGCGCCACATTCCTCATTGTAAGTGTG-TTCTATTC---AGCTAA-----------------GAT------------------TTATTTTAGTTTTTCATC--CTTGGCCTCCGCC---AATCAGTTGTATAGTGTTCATTTTTATCGGTTCAAGCTGTTAAGACGTCTGCAACGCAGACTACGTTGGT-GCTGAGGTAATGTT---GACCCTCCGGCC-C-ATCAAATCC---TTCAGCTTAGTT-TGAGTAGGCTAGTC---CAGCACTAAGCCCTT--TAGTTG-TAAATCTTAC---C--------------CAC----ACTAAA--------------TGTTT--GCTTT-------------C--TGTTTGC---CCCATAGGATGCCATGTTCTTTGAGAAATCGGCAAACCAAGAGAGCGATAGGCCCGG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
ACCTGGATGTGCGCATGAAGGCGGTCCTCCTCGGCGCCACATTCTTGATTGTAAGTAGT-TCCGTTGCTGACGCTGA-----------------GGC------------------TTGCCGCTCTAATCGATGAAATGG-GCT-TGCCACAACTCAGTTGTACAGCGTTCACTTCTGTCGGCCCAAGATTGCGAAGCGGTTGCGACGCAGGCTTCGTTGGT-GCTGAGGTAAGGTCGTTGTGCGCCCAGCC-CGATCCAGTCCAAGTCCAGCTTTGTT-CGATTAGGCTAGCC---CCGCTCCG-CTCCGC--A---------TTGCAAC---C---GATCAACCGATCAGACTTACTAATGTGAA---------TCTTT--CCCT--------------G--CCTTTGC---CCCCCAGGATGCAATGTTCTTTGAGAAGTCCGGCAACCGAGAGACCGACGGACCCGGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTCTTTGAGAAGTCCGGCAACCGA.................2811.0010100000000
................................GGCGCCACATTCTTGATTGATG................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010001000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCAATGTTCTTTGAGAAGTCC..........................2411.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTTGAGAAGTCCGGC.......................1911.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCAATGTTCTTTGAG................................1811.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTCTTTGAGAAGTCCGG........................2111.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTCCGGCAACCGAGAGAC............2011.0010100000000
.............CATGAAGGCGGTCCTCCTCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010100000000
..............ATGAAGGCGGTCCTCCTCGGCGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.5010000100000
droPer2
ACCTGGATGTGCGCATGAAGGCGGTCCTCCTCGGCGCCACATTCTTGATTGTAAGTAGT-TCCGTTGCTGACGCTGA-----------------GCC------------------TGGCCGCTCTAATCGATGAAATGG-GCT-TGCCACAACTCAGTTGTACAGCGTTCACTTTGGTCGGCCTAAGATTGCGAAGCGGGTGCGACGCAGGCTACGTTGGT-GCTGAGGTAAGGTCGTTGTGCGCCCAGCC-CGATCCAGTCCAAGTCCAGCTTTGTT-CGATTAGGCTAGCC---CCGCACCG-CTCCGC--G--TTG-CAA------C---C---GATCAACCAATCAGACATACTAATGTGAA---------TCTTT--CCCT--------------G--CCTTTGCCCCCACCCAGGATGCAATGTTCTTTGAGAAGTCCGGCAACCGAGAGACCGACGGACCCGGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
................................................................................................................................................................................GTCGGCCTAAGATTGCGAAGCGGGTGC...........................................................................................................................................................................................................................................................................2712.002200000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGGCAACCGAGAGACC...........1911.001000001
........................................................AGT-TCCGTTGCTGACGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
.......................................................................................................................................................................................................................GTTGGT-GCTGAGGTAATC............................................................................................................................................................................................................................................1890.222020000
droWil2
TCTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---T--------------CTC----AC----------------------------------------------------T---TTTTCAGGATGCCATGTTCTTTGAGAAATCTGGTAACCGTGAATCCGATGGACCCGGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAGAAATCTGGTAACCGTGA...............2311.00100100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCTGGTAACCGTGAATCCGATG.......2411.00101000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTGAGAAATCTGGTAACCGTGAA..............2611.00101000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACCGTGAATCCGATGGAC....2111.00100001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGAGAAATCTGGTAACCGT.................2211.00100100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGGTAACCGTGAATCCGATGGAC....2611.00100001
droVir3
ACTTGGATGTTCGCATGAAAGCCGTGCTGTTGGGAGCCACTTTTCTCATTGTAAGCAGC-TGCATTTGTTATTTCAT-----------------CGC------------------AAGTTTCACTAACCGCAC--ATTTGCA--TG------TTAAGTCGTACAGCATTCATTTCTTTCGTTTACAAATTATGAGTTGTCTGCATCGCAGATTTCGTTGGT-GCCGAGGTAAAACTT--ATCTTATGAGCC-C-TAACAACGC---CCCAGCTTCTTT-TGATTGTGCTAGAG---CATCACCA-----------CACGTCGAGTCAT-T---T--------------CAC----TTTGTT---AACCTACTGATTTTGT-----------------------------T---TCTTTAGGATGCCATGTTCTTTGAGAAGTCCGGAAACCAGGAGACCGATCGTCCAGGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCAGGAGACCGATCGTCC...2011.001000100000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTTGAGAAGTCCGGAAACCA..................2411.001000000000000000000100000000000000000000000000000000000000000000
........GTTCGCATGAAAGCCGTGCTGTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000001000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................GTGCTAGAG---CATCACCA-----------CAC........................................................................................................................................................2011.001000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................TCAT-T---T--------------CAC----TTTGTT---AACCTACTGA................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTCCGGAAACCAGGAGACCGATCGTCCA..3111.001000000000000000000000000000000000000000000000000000000010000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGGAAACCAGGAGACCGATCGTCCA..2811.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................TAAGTCGTACAGCATTCATTTCTTC....................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000010000000000000000000000000000000000
.................AAAGCCGTGCTGTTGGGAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000100000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGTCCGGAAACCAGG................1911.001000000000000010000000000000000000000000000000000000000000000000
...........CGCATGAAAGCCGTGCTGTTGGGAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000100000000000000000000000000
..................................................................................................................................................................................................................ATTTCGTTGGT-GCCGAGGTA...............................................................................................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCCGGAAACCAGGAGACC...........2011.001000000010000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTCCGGAAACCAGGAGACCGATC.......2511.001000000000000000000000000000000000000000000000000000000000000001
....................................................................................................................................................................................................................................................................................TT-TGATTGTGCTAGAG---CATCACCA-----------CAC........................................................................................................................................................2711.001000000100000000000000000000000000000000000000000000000000000000
..............ATGAAAGCCGTGCTGTTGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000010000000000000000000000000000000000000000000000000000000
..............ATGAAAGCCGTGCTGTTGGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000100000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGGAAACCAGGAGACCG..........2011.001000000000000000000000000000001000000000000000000000000000000000
...........CGCATGAAAGCCGTGCTGTTGGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000010000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTTGAGAAGTCCGGAA......................2011.001000000000000000000000000000000000000000000000000000000000000100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCATGTTCTTTGAGAA..............................1911.001000000000000000000000000000000000000100000000000000000000000000
droMoj3
ATTTGGATGTACGCATGAAAGCCGTGCTGCTAGGCGCCACGTTCCTCATTGTAAGCACG-AGCTTTT--------------------------------------------------------GTTATTTAAT--CCCACAATCAGAT---ATTAAATCACCCAGAATTCATTGCTTTTCGCCTTAATTCAAAAGTTG-ATATATTGCGGGAATTGTCGGTAGCAGAAG--------------------CC------------------------------------CCAACG---CAGAGTCAACTCTTT--TACTGA-TTTGTA----------------------------------T--------------TGAAT--GATTTCTGACCTCACTTAT--TTATTTT---CTTTCAGGATGCCATGTTCTTTGAGAAGTCTGGCAACCGCGAGGGAGATACTCCAGGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCGCGAGGGAGATACTCCAGG2411.001100000
.....GATGTACGCATGAAAGCCGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
.......................................................................................................................................................................................................................GTCGGTAGCAGAAG--------------------CC------------------------------------CCA....................................................................................................................................................................................1911.001000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACCGCGAGGGAGATACT.....2011.001000001
droGri2
ATTTGGATGTACGCATGAAAGCCGTGCTGCTTGGCGCCACGTTCCTCATTGTAAGCAAC-CTCAATTTTAATTAT------------------------------------------ATAGCAAATTTGAAAC--ACTAAT--CGCAC---ATTCAGTCGTACAGCATTCATTTCTTTCGCCTTAAACTCATGAGTCGTCTGCATCGCAGACTTCGTTGGC-GTTGAGGTAAAACTT--TACTAATATACCCC-ATCACAAT----CCGAGCTTACTC-TGAATATGCTAGAT---AATAAGCATTTTCCA--TAATAC-TGAATCAT-T---T--------------CAA----ATTGAT---AA---------TCTTT--GTATT-------------T--CATT--T---ATTTTAGGATGCAATGTTCTTTGAAAAGAGCGGCAATCGGGAGACTGATCGTCCAGGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
....................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGAGCGGCAATCGGGAGACT...........2311.00101
................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGGGAGACTGATCGTCCAGG2211.00110
droAna3
ATCTGGATGTCCGCATGAAGGCGGTTCTCTTGGGAGCCACATTCCTGATCGTAAGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....GATGTCCGCATGAAGGCGGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
.....GATGTCCGCATGAAGGCGGTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
..........................CTCTTGGGAGCCACATTCCT........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
....GGATGTCCGCATGAAGGCGGTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
...............TGAAGGCGGTTCTCTTGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000
..............ATGAAGGCGGTTCTCTTGGGAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
.........TCCGCATGAAGGCGGTTCTCTTGGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
....GGATGTCCGCATGAAGGCGGTTCTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
droBip1
ATCTGGATGTACGCATGAAGGCGGTTCTCTTGGGAGCTACATTCCTGATTGTAAGTAGC-T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
ATTTGGATGTGCGCATGAAGGCGGTGTTGCTGGGCGCCACATTCCTGATTGTAAGTAGT-TTTAATAATATTATTTATATATATATAAAATATAGATTATAAATTAATATTAATATTATTC----------------TGG------------TTCAGTTGTATTCTGTTAACTTTTATCGATTCAAGCTGGGGCGGCAACTGCAACGCAGATTATGTTGAA-GCTGAGGTAACTTCATGGAA------------------------CCCAGCTTAGTT-TGCGTAGGCTAAACCCCCAGCTAAAGGTCTTTTTGTTCAT-TAAAATGTAC------------------CCC----ACTAAT--------------CAT-T--ACT-----------CTTTT--TCTCTTT---CTTTAAGGATGCCATGTTCTTTGAGAAACAAGGCAACCAGGAGACAGATCGCCCTGGSizeHit CountTotal NormTotal
No Reads
droFic1
ATCTGGATGTGCGCATGAAGGCCGTTCTGCTGGGCGCCACATTCCTGATTGTAAGTGCCGCTCC-CTC----GGTTA-----------------AAT------------------TTATT-TTGTAATTCATA--TATGGCCT-TGCC---AATCAGTTGTATAGTGTTAACTTTTATCGGTTAAAGCTGTTGAGACGTCTGAGGCGCAGATTTCGTTGGT-GCTGAGGTAACTGA---AACCCCCAAGCC-C-ATCAAATCC---TCCAGCTT--CT-TGGTTAGGCTAGTT---CAGCTATAGGTCCTT--GAACCT-TATGATTTAC---C--------------AAC----ACTAAG--------------TTTAT--ACCTT----------------TTTTTGC---TCCGCAGGATGCCATGTTCTTCGAGAAGTCTGGAAACCGCGAGACTGATGGACCCGGSizeHit CountTotal NormTotal
No Reads
droEle1
ACTTGGACGTGCGCATGAAGGCCGTATTGCTGGGGGCCACATTCCTCATCGTAAGTGGT-TTCCTTT-----GGTTA-----------------GAG------------------TTACA-TAGTAATCCAAC--GTTGGCCTCTGCC---ACACAGTTGTATAGCGTTCACTTTTATCGATTCAAGCTGTTGAGGCGTCTGCAGCGCAGATTTCGTTGGT-GCTGAGGTAACATTT--AAGCCCCCAGCC-C-ATCAAATCC---TCCAGCTTAGTT-TGAGTAGGCTAACC---CAGCTGCAGCTCCGT--GATCTG-TATCCGCATC---T--------------CAG----ACTAAT--------------TGTGTGTGC-TT-------------C--TCTCTGT---CCCACAGGATGCCATGTTCTTTGAGAAGTCTGCCAACCAGGAAACCGATAGACCCGGSizeHit CountTotal NormTotal
No Reads
droRho1
ACCTGGATGTGCGCATGAAGGCCGTTTTGCTGGGTGCCACATTCCTCATTGTAAGTGCT-TCCCTTC-----GCTTA-----------------GAT------------------TTATC-TAGTAACCCAAC--GTTGGCCCCTGCC---AATCAGTTGTATAGCGTTCATTTCTATCGATTCAAGCTGTTGAGGCGTCTGCAGCGCAGATTTCGTTGGT-GCTGAGGTAACATAT--TATCCCCCAGCC-C-ATCAAATCC---TCCAGCTTAGTT-TGAGTAGGCTAGCC---ATGCTATAGTTCCTA--CATCTG-TTAAATTAAA---T--------------CCG----ACTAAT--------------TAAGT--GCTTT-------------C--CTTTTGA---TCCACAGGATGCCATGTTCTTTGAGAAGTCCGGCAACAGGGAGACCGATAGACCCGGSizeHit CountTotal NormTotal
No Reads
droBia1
ACCTGGATGTGCGCATGAAGGCCGTGCTGCTGGGCGCCACATTCCTGATTGTAAGTGGT-TTAATTC-----GGTCA-----------------TAT------------------TTGCT-TGGTAACCCCAT--GTTGGCTCCTGCC---AATCAGTTGTATAGTGTTCATTTTTATCGGTTCAAGCTGTTGAGGCGTCTGCAGCGCAGATTTCGTTGGT-GCTGAGGTAAAACAG--AGTTCCCCAGTC-C-ATCGACTCC---TCCAGCTTAGTT-CGAGTAGGCTAGCC---CTGCATCAGGTCCTT--AATTCC-TAAATAATAC---A--------------CAT----GCTAAC--------------GATAT--AT--T-------------T--T-TTTTA---CCCACAGGACGCCATGTTCTTCGAGAAGTCTGGAAACCAAGAAACCGACAGACCCGGSizeHit CountTotal NormTotal
No Reads
droTak1
ACTTGGATGTGCGCATGAAGGCCGTTCTCCTGGGCGCCACCTTCCTGATTGTAAGTGCT-TCGTTTTC----GTTTA-----------------GTT------------------TTGCC-TAGTAACACATA--GTTGGCTCCTGCC---AATCAGTTGTATAGTGTTCATTTCTATCGGTTCAAGCTGTTGAGACGTCTGCAGCGCAGATTTCGTTGGT-GCTGAGGTAATTTA---AATCCCCCAGCC-C-ATCAAATCC---TCCAGCTTAGTT-TGAGTAGGCTAGCC---CGGCATAAGGTCCTT--AATCCG-TAAAAGTTAT---C--------------TCA----ACTGAT--------------TGTGT--GCTTT-------------C--T-CTTCC---CCCACAGGATGCCATGTTCTTTGAGAAGTCCGGAAACCAGGAAACCGACAGACCCGGSizeHit CountTotal NormTotal
No Reads
droEug1
ACTTGGACGTGCGCATGAAGGCCGTTCTGCTGGGCGCCACATTCCTGATTGTAAGTGAT-ATATTTTA----AATTA-----------------GAT------------------TTACC-TAATAACCCATC--GTTGGCCTCGGCC---AATCAGTTGTATAGTGTTCATTTCTATCGGTTCAAGCTGTTGCGACGTTTGCAGCGCAGATTTCGTTGGT-GCTGAGGTAATGTG---AATCCCCCAGCC-C-ATCAAATCC---TCCAGCTTAGTTTTTAGTAGGCTAGCC---GAGCTTTAAGACCTT--TAAACG-TGTATGGTAC---T--------------CAG----ACTAAT--------------TTTGTTTAT-TT-------------CATTTTTTGC---CCCTCAGGATGCCATGTTCTTTGAGAAGTCTGGAAACCAAGAGACCGATAGACCAGGSizeHit CountTotal NormTotal
No Reads
dm3
ACTTGGATGTGCGCATGAAGGCCGTTTTGCTGGGTGCCACATTCCTCATAGTAAGTGTT-TTCTTTTC---AGCAAA-----------------GAT------------------TTATTGTAGTTATTTATC--ATTGGCCTCTGCC---AATCAGTTGTATAGTGTTCATTTTTATCGGTTCAAGCTGTTAAGACGTCTGCAACGCAGACTTCGTTGGT-GCTGAGGTAATGTT---GACCCTCCAGCC-C-ATTAAATCC---TCCAGCTTAGTT-TGAGTAGGCTAGTC---CAGCACTAAGTCCTT--CACTCG-TCAATGTTTTCTGTCTG-----------TTT----TCTAAA--------------CGAAT--GCTTT-------------C--TGTTTGC---CCCACAGGATGCCATGTTCTTTGAGAAAGCCGGAAACCAAGAGACCGATAGGCCCGGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGAAAGCCGGAAACCAAGAGACCGA.........2814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCATGTTCTTTGAGAAAGCC..........................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
ACTTGGATGTGCGCATGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000100000000000000000000
...TGGATGTGCGCATGAAGGCCGTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................TTGGT-GCTGAGGTAATC............................................................................................................................................................................................................................................1712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCATGTTCTTTGAGAAAGCCGGA.......................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCCATGTTCTTTGAGAAAGCCGGA.......................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..TTGGATGTGCGCATGAAGGCCGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTTCTTTGAGAAAGCCGGAAACC...................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
ACTTGGATGTGCGCATGAAGGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.CTTGGATGTGCGCATGAAGGCCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
ACTTGGATGTGCGCATGAAGGCCGTTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.........................................................................................................................................TGGCCTCTGCC---AATCAGTTG......................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCTTTGAGAAAGCCGG........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCAAGAGACCGATAG......1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..TTGGATGTGCGCATGAAGGCCGTTTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAACCAAGAGACCGATA.......1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCAAGAGACCGATAGGCC...2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAGAAAGCCGGAAACCAAGAGACCATC........3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..TTGGATGTGCGCATGAAGGCCGTTTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..TTGGATGTGCGCATGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAGAAAGCCGGAAACCAAGAGACC...........2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.CTTGGATGTGCGCATGAAGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...............TGAAGGCCGTTTTGCTGGGTGCC................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCAAGAGACCGATAGC.....1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................GTTGGT-GCTGAGGTAATCC...........................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.CTTGGATGTGCGCATGAAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCCGGAAACCAAGAG..............1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.......TGTGCGCATGAAGGCCGTTTTGCTGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................TAAA--------------CGAAT--GCTTT-------------C--TGTTTGC---CCCAC....................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAGAAAGCCGGAAACCAAGAGG.............2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCTTTGAGAAAGCCGGAAACCA..................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGGAAACCAAGAGACCGATA.......2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCATGTTCTTTGAGAAAGC...........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.......TGTGCGCATGAAGGCCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......ATGTGCGCATGAAGGCCGTTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.............CATGAAGGCCGTTTTGCTGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACCAAGAGACCGATAGGC....2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAGAAAGCCGGAAACCAAGAGAC............2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCGGAAACCAAGAGACCGATA.......2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............GCATGAAGGCCGTTTTGCTGGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
droSim2
ACTTGGATGTGCGCATGAAGGCCGTTCTACTCGGCGCCACATTCCTCATAGTAAGTGCT-TCCCTTC----AGCTAA-----------------GAT------------------TTATTGTAGTTATTTATC--TTTGGCCTCTGCC---AATCAGTTGTATAGTGTTCATTTTTATCGGTTCAAGCTGTTAAGACGTCTGCAACGCAGACTTCGTTGGT-GCTGAGGTAATGTT---AACCCTCCAGCC-T-ATTAAATCC---TGCAGCTTAGTT-TGAGTAGGCTAGTC---CAGCACTAAGTCCTT--CACTCG-TCAATGTTAC---C--------------CAC----ACTAAA--------------TGAAT--GCTTT-------------C--TGTTTGC---CCCACAGGATGCCATGTTCTTTGAGAAAGCCGGAAACCAAGAGACCGATAGGCCCGGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGAGAAAGCCGGAAACC...................2012.00200200000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTGAGAAAGCCGGAAACCAAG................2411.00100000001000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGAGACCGATAGGCCC..1811.00100100000000000000
..TTGGATGTGCGCATGAAGGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCCATGTTCTTTGAGAAAGCCGGA.......................2711.00100000001000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAGAAAGCCGGAAACCAAGAGACCGA.........2911.00100000010000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCCGGAAACCAAGAGACCGAT........2511.00100100000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCAAGAGACCGATAGGC....1911.00100100000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGAAAGCCGGAAACCAAG................2111.00101000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTCTTTGAGAAAG............................1611.00100000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACCAAGAGACCGATAGGCCCG.2311.00110000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGAAAGCCGGAAACCAAGAGAC............2411.00100000010000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCTTTGAGAAAGCCGGAAACCAAG................2711.00100000000000010000
droSec2
ACTTGGATGTGCGCATGAAGGCCGTTCTACTCGGCGCCACATTCCTCATAGTAAGTGCT-TCCTTTT----AGCTAA-----------------GAT------------------TTATTGTAGTTATTTATC--ATTGGCCTCTGCC---AATCAGTTGTATAGTGTTCATTTTTATCGGTTCAAGCTGTTAAGACGTCTGCAACGCAGACTTCGTTGGT-GCTGAGGTAATGTT---AACCCTCCAGCC-T-ATCAAATCC---GCCAGCTTAGTT-TGAGTAGGCTAGTC---CAGCACTAATTCCTT--CACTCG-TCAATGTTAC---C--------------CAC----ACTTAA--------------TGAAT--GCTTT-------------C--TGTTTGC---CCCACAGGATGCCATGTTCTTTGAGAAAGCCGGAAATCAAGAGACCGATAGGCCCGGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGAAAGCCGGAAATCA..................1911.0010010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAATCAAGAGACCGATA.......2011.0010010
droYak3
ACTTGGATGTGCGCATGAAGGCCGTTCTGCTGGGCGCCACATTCCTCATAGTAAGTGTG-CTCTTTTC---AGCTAA-----------------GAT------------------TTATTGTAGTTATTCATC--CTTGGCCTCTGCC---AATCAGTTATATAGTGTTAATTTTTATCGGTTCAAGCTGTTAACGCGTCTGCAGCGCAGATTTCGTTGGT-GCTGAGGTAATGTT---GACCCTCAGGCC-C-ATGAAAACC---TTCAGCTTAGTT-TGAGTAGGCTAGTG---CAGCACTAAGTCCTT--CAATCG-TATATGTTAC---C--------------CAC----ACTAAA--------------TGTAT--GCTTT-------------C--TATTTGC---CCCACAGGATGCCATGTTCTTTGAAAAAGCCGGTAACCGAGAGACCGATGGGCCCGGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................CGTTCTGCTGGGCGCCACATT...........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100001000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGAAAAAGCCGGTAACC...................2011.00101000000000
............GCATGAAGGCCGTTCTGCTGGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCTTTGAAAAAGCCGGTA......................2111.00100100000000
.......................GTTCTGCTGGGCGCCACATTCCTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
.......................................................................................................................................................................................................................GTTGGT-GCTGAGGTAATC............................................................................................................................................................................................................................................1811.00101000000000
.......................................................................................................................................................................................................................GTTGGT-GCTGAGGTAATCC...........................................................................................................................................................................................................................................1950.20101000000000
droEre2
ACTTGGATGTGCGCATGAAGGCCGTTCTGCTGGGCGCCACATTCCTCATTGTAAGTGTG-TTCTATTC---AGCTAA-----------------GAT------------------TTATTTTAGTTTTTCATC--CTTGGCCTCCGCC---AATCAGTTGTATAGTGTTCATTTTTATCGGTTCAAGCTGTTAAGACGTCTGCAACGCAGACTACGTTGGT-GCTGAGGTAATGTT---GACCCTCCGGCC-C-ATCAAATCC---TTCAGCTTAGTT-TGAGTAGGCTAGTC---CAGCACTAAGCCCTT--TAGTTG-TAAATCTTAC---C--------------CAC----ACTAAA--------------TGTTT--GCTTT-------------C--TGTTTGC---CCCATAGGATGCCATGTTCTTTGAGAAATCGGCAAACCAAGAGAGCGATAGGCCCGGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..TTGGATGTGCGCATGAAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATCGGCAAACCAAGAGAGC...........2211.0011000000
...................GGCCGTTCTGCTGGGCGCCAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGGCAAACCAAGAGAGC...........1911.0011000000
ACTTGGATGTGCGCATGAAGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCATGTTCTTTGAGAAATCGGC........................2511.0010100000
..........GCGCATGAAGGCCGTTCTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
........GTGCGCATGAAGGCCGTTCTGCTGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGGCAAACCAAGAGAGC...........2011.0011000000
......................CGTTCTGCTGGGCGCCAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0011000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGAGAAATCGGCAAACCAAGAGAGC...........2811.0010000100
.......................GTTCTGCTGGGCGCCACATTCCT........................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010001000

Generated: 05/18/2015 at 06:09 AM