ID:

dps_3040

 Coordinate:

XR_group6:4649199-4649294 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-39.6 -39.2 -38.9 -38.8

Flybase annnotation

exon [dpse_GLEANR_12460:2]; CDS [Dpse\GA20322-cds]; CDS [Dpse\GA20322-cds]; exon [dpse_GLEANR_12460:1]; intron [Dpse\GA20322-in]

Repeatable elements

NameClassFamilyStrand
Gypsy8-I_Dpse-intLTRGypsy-
mature
  1. 2:22915750-22915769 +
  2. dps_3040  XR_group6:4649204-4649223 -
  3. XR_group6:11710665-11710684 -
  4. XR_group6:11710830-11710849 -
star

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------##################################################
GCTGCCGCTAGCGACAACCTCCAACTGGAGCCTGACCACGGCCGCGACGAGCATCAGTCTGGCGGATGCGGCATCCGCAGGGGCAGCAGCAGTGGCAGCGGCATCTGCAGCGGCATCGGCAGCAGCATCAGCCGCAGCAGCGGCAGCAGCAGCGGCGGCCGCAGAGGCGGCCCAAATAGAGGTAGACAAGTCGGGG
**************************************************((........(((.(((((.((..(((.....((.((.((((..((....))..)))).)).))..)))..)).))))).))).........))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 GSM444067
head
 V112
male body
.........................................................................................................................GCAGCATCAGCCGCAGCAGC....................................................... 20 0 4 0.25 1 1 0 0
..................................................................................................................................................CAGCAGCGGCGGCCGCATA............................... 19 1 8 0.13 1 1 0 0
.................................................................................................................................................TCAGCAGCGGCGGCCGCAAA............................... 20 2 16 0.13 2 2 0 0
...........................................................TGCCGGATCCGACATCCGCA..................................................................................................................... 20 3 8 0.13 1 1 0 0
......................................................CAGTCTGGCAGATTCGGC............................................................................................................................ 18 2 11 0.09 1 1 0 0
.......................................................................................................TCTGCTGCGGCATCGGCT........................................................................... 18 2 20 0.05 1 1 0 0
..........................................................................................................................................AGCGGCAGCAGCAGCGGGGGT..................................... 21 2 20 0.05 1 0 0 1
.......................................................................................................................................AGCAGCGGCAGCAGCAGCGGC........................................ 21 0 20 0.05 1 0 1 0

Anti-sense strand reads

CGACGGCGATCGCTGTTGGAGGTTGACCTCGGACTGGTGCCGGCGCTGCTCGTAGTCAGACCGCCTACGCCGTAGGCGTCCCCGTCGTCGTCACCGTCGCCGTAGACGTCGCCGTAGCCGTCGTCGTAGTCGGCGTCGTCGCCGTCGTCGTCGCCGCCGGCGTCTCCGCCGGGTTTATCTCCATCTGTTCAGCCCC
**************************************************((........(((.(((((.((..(((.....((.((.((((..((....))..)))).)).))..)))..)).))))).))).........))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 GSM343916
embryo
.......GATCTCTGTTAGAGGTTGAC......................................................................................................................................................................... 20 2 2 0.50 1 1 0
..........................................................................................................CGTCGCCGTAGCCGTCGT........................................................................ 18 0 8 0.13 1 1 0
.................GGAGGTTGGCCTCAAACTGG............................................................................................................................................................... 20 3 20 0.05 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 XR_group6:4649149-4649344 - dps_3040 GCTGCCG--CTAGCGACAACCTCCA--------------------------------------------AC---------------------------------T--------------G-GAGCCTGACCAC----------------------------------------------------------GGCCGCGACGAGCATCAGTCTGGCGGATGCG---------GCATCCGCAG-------------------------------------------------------------------------------------------GGGCAGCAGCAGTGGC------------------AGCGGCATCTGCAGCGGC---------------------------------------ATCGGCAGCAGCA---------------------------------T---CA------G---------CC------GCAGCAGCGGCAGC------AGCAGCGGC------GGCCGCAGAG-GCGGCCCA--AATAG-----------------------------------AGGTAGACAAGTCGGGG
droPer2 scaffold_9:2949623-2949830 - GCTGCCG--CTAGCGACGACCACCA--------------------------------------------AC---------------------------------T--------------G-GAGCCTGACCAC----------------------------------------------------------GGCCGCGACGAGCATCAGCCTGGCGGATGCG---------GCATCCGCAG-------------------------------------------------------------------------------------------GGGCAGCAGCAGTGGC------------------AGCGGCATCTGCAGCGGCAT------------------------CGGCAGCAGC---ATCGGCAGCAGCA---------------------------------T---CA------G---------CC------GCAGCAGCGGCAGC------AGCAGCGGC------GGCCGCAGAG-GCGGCCCA--AATAG-----------------------------------AGGTAGACAAGTCGGGG
droWil2 scf2_1100000004961:5415329-5415516 + GCTGTAG---------------------------------------------------------CGG--------------------------------------CATC------ATCAGC--------------------------------------------------AGCA---GCAGCA---TCAGCAGC--------------------------A---------GC---AGCATCAGCAGTAACA------------------------------GCTTCAGCAT---------CA------GCCGCAG----------------------CGGC------AGCAGCATCAGCGGCAGCA------------GCAGCAGC---GCC---------------AACAT------------------------------CAGCGGCAGCAGCA---------------------------------------------------GCAGCGCCAGCTGCAGCAGC------AAAAGGG----GCAGCC-AGCAGGAGGAGCAGCAAC----------------------------------AGCGGGAG
droVir3 scaffold_13047:18522721-18522908 + TCAGCCG---------------------------------------------------------CTG--------------------------------------CCAC------AGCAAC--------------------------------------------------AACA---ACAACA---GCAACAAC--------------------------A---------ACCTCAAGAGCA---ACAA---------------------------------AAACACCAA---------AGG-----GCCGCAGCAGCCGCAG-------CAGTTGCAGCAGT-TC------------------AGCAGCAGTTG--GCGAC---------------------------------------ACAGGCA---------------------------------GCAACAGTAGCAGCAGCAG---CAG---CA---GCAGCAGC---AGCAGC------AGCA------------------G----C--------AGAAGG----------------------------------AGGAGAAGGAGTAGGAG
droMoj3 scaffold_6540:27735625-27735814 + GCGGCGG--CTATCGCCAT------------------------------GTCTCATCG----------------------------------------------------------------AATCTGTCCACCGTCGCCGAGCAGCCTTCGGCCAATGCAGAGCCACATCAGCA---GCAGCAGCAGCAGC--------------------AGCAGCAGCA---------ACAACAACAGCA----------------------------------------------------------------------------------GCAGCAA------------------------------------------------C---AGCAAC---AACAGCAGCAACAACAACAGCAGCAGC---AGCAGCA---------------------------------------------------------------------GCAGC---AACAGC------CGCAGCCGC-----------------------------------------------------------------------------AGCCGGA
droGri2 scaffold_9828:10249-10424 + GCAGCGG---------------------------------------------------------CTG--------------------------------------CAAC------AACAGC--------------------------------------------------AGCA---GCAGCG---GCAGCAGC--------------------------A---------AC---AGCAGCAGCAGGAACA------------------------------GC------AG---------CAGCAGCAGCAGC----------------------------------AGCA---------------------------GC------------------GGCGGCGGCAGCAGCAGCAGC---AGCAGCAGCAGCA---------------------------------A---CA------G---------CA------GCAGCAGCAGCAGC------ATCAGCAG-------------------CAGCTGC--AGAAGCAGCAGCAACAG-----------------------CAGCAGT-------CAA
droAna3 scaffold_13266:17994445-17994634 + GCAGCAG---------------------------------------------------------CAA--------------------------------------CAAC------AGCAAC--------------------------------------------------AGCA---GCAGCA---GCACCTCCATGCC-----------------------------------CAGCAGCT---GCTG---------------------------------GCCCAGAGC---------CAGGCC----------------------------------CAGTTGCAGCAGCAACAGCAGCA---------------GCACCACC---------------------AGCAACAGCAAC---AG--GCA---------------------------------GCAGCGG---------------------CG---GCCGCAGC---GGCAGC------AGCAGCAGC------GGCCGGAGTGCACGGCC-A--GCATG-----------------------------------GGGGACATGTGTCGCAC
droBip1 scf7180000396431:787413-787614 + GCAGGCG---------------------------------------------------------CAG--------------------------------------CAGC------AACAAC--------------------------------------------------AGCA---GCAGCA---GCAGCA--------------------------------------ATCCCAGCAGCAACAGCAACA------------------------------GC------AG---------GCGGTGGTGCTCC----------------------------------ACCA---------------------------GCAGCAGC---AGCAACAACAACAGCAGCAGCAAAAG---------------C---A---------------------------CCAACAGCA---------TCAGCACCAGCA---------------GCAGC------------------------AGCAGGT-------TC--TGCACCAGCAGGCTCAACTGGTGG-CGCCCCAA-AACA--TTGTCCAGCAGGCTGGA
droKik1 scf7180000302809:406-575 + GCAGCAG---------------------------------------------------------CAC--------------------------------------CACC------AGCAGC--------------------------------------------------AGCA---CCAGCA---GCAGCA--------------------------------------GCACCAGCAGCAGCAGCTCCA------------------------------GC------AG---------CAGCAGCACCAGC----------------------------------AGCA---------------------------GCACCACC---AGC---------------AGCAG---CAGCACCAG------------------------------------CAGCAGCAGCA---------C---------------------------CAGC------AGCAGCAGCACCAGCAGCAGCAGCA------CAC--AGCAGCAGCAGCAAC----------------------------------AGCAGCAG
droFic1 scf7180000454102:2871-3069 - GCTACAG---------------------------------------------------------CAG--------------------------------------CAAC------AACGGC--------------------------------------------------AGCA---GCAGCC---GCAGCAGC--------------------------A---------TC---AGCAGCAGCCGCAGCA------------------------------GC------AT---------CAGCAGCAGCCGC----------------------------------AGCAGCATCAGCAGCAGCCG---------CAGC---AGC------------------------------------AT---------CAACAGCAGCCGAAGCAGCAACAACAGCAGCAACAACG---------G------------------CGGCAGCGACAGC------AGCAGCAGC------CGCAGCAGCA-GCTGCGCA------------------------------------------AGCGCGAGGCGTCGGCG
droEle1 scf7180000491272:1175394-1175569 + GGCGTCG--CTGTCGATGATCACCA-----------------------GA--TCATCG----------GAGCCGGAGGCCACATCC-----------------------AGCGGTG-----------------------------------------------------------------------------------------GCGAACCGGC------GGTAGAAGTGG---AAG----------------------------------------------------------------------------------------------------------------C---------------AGCA---------GC---AGCA---GCAGCAGCAGCAGCGGCAGCAGCAGCA------------------------------------------GCAGC---------------------------T------ACAGC---GGCAGC------AGCAGCTGC------AGCCGCCGAG-GAGG--------AAG-----------------------------------TGGAGGACATGC--CGG
droRho1 scf7180000778257:113188-113372 + GCCGCGG---------------------------------------------------------CAA--------------------------------------CAGC------AACTGC--------------------------------------------------AGCG---GCGACG---GCGGCGGC--------------------------G---------AC---GGCAACATC------A------------------------------ACCTCAGCAA---------CA------TCTGCGG----------------CGGCAACAGCAACAGC------------------AGCG---------GC---GAC------------------------------------AG------C---AGCAACATCTGCGGCAACAACGGCAGCGGCGG--GGA---------GCAGCAG---CA---GTGGCAGT---GGCAGC------AGCG---------------------------------------------GCAG-------TGGCAG----------TAG--TACAACCACAAC
droBia1 scf7180000302069:408236-408427 + GCTGGCGCCGGAGCGGCGGCCTCCAGCAAGGACTTTCACATGATCATGAACACCGCCGTGGCAGCG-----------------------------------------GCAGCAGCA-----------------------------------------------------------------------------------------GCCGCCCAGC------AGCAACAGCAA---CAC----------------------------------------------------------------------------------------------------------------C---------------AGCA---------AC---ACCA---GCAACAGCAGCTCCAGCAACAGCAGCA------------------------------------------CCAGCAACAGCA---------GCAGCACCAGCA---GCAGCACC---AGCAGC------AGCAGCAAC----------------------------------------------------------------------------AGTCGCAG
droTak1 scf7180000415381:332816-333007 - GCTCATC---------------------------------------------------------GTCCAACTCCAGCTCCAGTTCGAGTCGCAGCGAGCTTTC----CAAGAA---------------------------------------GCAGAAGAAGAGC-----------------------------------------------------TCCA---------GCAGCAGCAG-------------------------------------------------------------------------------------------CGGCAGCGGCAGTGGC------------------AGCAGCTCCTCCAGCGGCTCC---------------------------------T------CCAGC--GAGGATGAGCCGGAGCA------------------GGA---------G---------------------------CAGC------AGCAGCAGC---------------T-CCGAT------------------------------TGCCCGAACAGCAGCAGCA--GCAGGAGGAGG
droEug1 scf7180000409607:19752-19935 - AGCAACA-----------------------------------------------------------G------------------------------------CC--------------A-A-----AACAAC--------------------------------------GGCAGCGACAACA---GCAGCAGC--------------------------G---------TC---AACAGCG---GCAG---------------------------------CGACGACAG---------CG----------------------GCAGCGA------CGAC------AGCGGCAGCGACGACAGCG------------GCGGCGAC---GAC---------------AGCGG---CAGCG------------ACA---------------G---------CAGCGGCGGCG---------A---------------------------CAGC------AGCGGCGGC------GACAGCAGCG-GCAGCGAT--AACAG-----------------------------------CGGCAGCGACGACGGCG
dm3 chr2R:20613896-20614095 - GATGGCG--CTTGCGTTTAT-----------------------TTCGGGGGCTCGGCGTGGCAGCA-----------------------------------------GCAGCAGCA-----------------------------------------------------------------------------------------TCAGCTCAGCAACAGCA---------ACACCAACAGCG----------------------------------------------------------------------------------GCAGCAA------------------------------------------------C---ATCTGC---AGCAGCAGCAGCGGCAGCAGCAGCAAC---ATCCGCAGCATCA---------------------------------A---CA------T---------CC------GCAGCA---GCAGC------AGCAGCAGC------AAATACAGCAGGCGGCCGT--AAAAG-----------------------------------GGGCAGAAGTGGCGGCG
droSim2 3r:26014818-26015001 - GCAGCCG---------------------------------------------------------CAG--------------------------------------CAAC------ATCCGC--------------------------------------------------AACA---GCAGCA---GCACCAAC--------------------------A---------GC---AGCAGCAGCAGCAACACGTGGCCCACGGAAAGAAGGCAGCCAGAAAACA------C----------------------------------------------------------C---------------AGCA------------ACATCT---GCAGCAACAGCAACAGCAGCAACAACAGC---AACAGCAGCAGCA---------------------------------A---CA------G---------CAGCAGCAGCAGC---AACAGC------AGCAGCAAC----------------------------------------------------------------------------AGACCAGT
droSec2 scaffold_21:362924-363120 - TG--CCC--CCGGCGCCTAC---CT--------------------------------------------AC---------------------------------C--------------C-GAGATAATCCCT----------------------------------------------------------ACTCGCGCCACACCCAAATTCAGCAACAGCA---------GCAGCAGCAACA----------------------------------------------------------------------------------GCAGCAA------------------------------------------------C---AGCAGC---AACAGCAGCAGCAACAGCAGCAGCAGC---AG------C---TGCAACAGCA------------------------A---CA------G---------CA------ACAGCA---ACAGC------AGCAG-----------GCTGCAGCG-TCGA-------------------------------TGCCCGAATATCAG-AGGGCAGCAGCTCGAGC
droYak3 v2_chrUn_268:1100-1297 + ACTGTGG---------------------------------------------------------CAG---------TGGCAACAGCAG---------------GT--------------G-T----------------------------------------------------------AGCG---ACAGGGGC--------------------------A---------GC---AACAGGAGCAGCAGCA------------------------------GGGGCAGCAGCAGGGGCAGCA----------------------GCAG---GGGCAGCAGCAGGGG------------------------------CAGCAGCAGG---GG---------------------------------------CAGCA---G---CAGGGGCAGCAGCAGGGGCAGCAGCAGGG---------G---------------------------CAGC------AGCAGTGGC------AGCAGCAGGG-GCAGCAGC--AGTGG-----------------------------------CAGCAGTAGTGGCAGCA
droEre2 scaffold_4845:21985289-21985491 - GATGGCG--CTTGCGTTTAT-----------------------TTCGGGGGCTCGGCGTGGCAGCA-----------------------------------------GCAGCAGCA-----------------------------------------------------------------------------------------TCAGCTCAGCAACAGCA---------ACACCAACAGCG----------------------------------------------------------------------------------GCAGCAA------------------------------------------------C---ATCTGC---AGCAGCAGCGGCGGCGGCAGCAGCAGC---ATCCGCAGCATCA---------------------------------A---CA------T---------CC------GCAGCAGCAGCAGC------AGCAGCAGC------AAACACAGCAGGCGGCCGT--AAAAG-----------------------------------GGGCAGAAGTGGCGGCG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
GCTGCCG--CTAGCGACAACCTCCA--------------------------------------------AC---------------------------------T--------------G-GAGCCTGACCAC----------------------------------------------------------GGCCGCGACGAGCATCAGTCTGGCGGATGCG---------GCATCCGCAG-------------------------------------------------------------------------------------------GGGCAGCAGCAGTGGC------------------AGCGGCATCTGCAGCGGC---------------------------------------ATCGGCAGCAGCA---------------------------------T---CA------G---------CC------GCAGCAGCGGCAGC------AGCAGCGGC------GGCCGCAGAG-GCGGCCCA--AATAG-----------------------------------AGGTAGACAAGTCGGGGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCA---------------------------------T---CA------G---------CC------GCAGCAGC.........................................................................................................2040.2510100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCGGCAGC------AGCAGCGGC------..............................................................................21200.0510000010000
droPer2
GCTGCCG--CTAGCGACGACCACCA--------------------------------------------AC---------------------------------T--------------G-GAGCCTGACCAC----------------------------------------------------------GGCCGCGACGAGCATCAGCCTGGCGGATGCG---------GCATCCGCAG-------------------------------------------------------------------------------------------GGGCAGCAGCAGTGGC------------------AGCGGCATCTGCAGCGGCAT------------------------CGGCAGCAGC---ATCGGCAGCAGCA---------------------------------T---CA------G---------CC------GCAGCAGCGGCAGC------AGCAGCGGC------GGCCGCAGAG-GCGGCCCA--AATAG-----------------------------------AGGTAGACAAGTCGGGGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCA---------------------------------T---CA------G---------CC------GCAGCAGCGGC......................................................................................................2311.001001000
droWil2
GCTGTAG---------------------------------------------------------CGG--------------------------------------CATC------ATCAGC--------------------------------------------------AGCA---GCAGCA---TCAGCAGC--------------------------A---------GC---AGCATCAGCAGTAACA------------------------------GCTTCAGCAT---------CA------GCCGCAG----------------------CGGC------AGCAGCATCAGCGGCAGCA------------GCAGCAGC---GCC---------------AACAT------------------------------CAGCGGCAGCAGCA---------------------------------------------------GCAGCGCCAGCTGCAGCAGC------AAAAGGG----GCAGCC-AGCAGGAGGAGCAGCAAC----------------------------------AGCGGGAGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............................................................................................................................................................................................................................................................................................................................................................AGCATCAGCGGCAGCA------------GC.......................................................................................................................................................................................................................................18200.15300030
................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCA---------------------------------------------------GCAGCGCCAG..............................................................................................1990.11100010
............................................................................................................................................................................GCA---GCAGCA---TCAGCAGC--------------------------A---------GC---A.......................................................................................................................................................................................................................................................................................................................................................................................21200.10200020
...................................................................................................................................................................................................................................................................................................................................................................TCAGCGGCAGCA------------GCAGCAGC---GCC---------------A...........................................................................................................................................................................................................24120.08100010
............................................................................................................................................................................................................................................................................................................................................................................................................................T------------------------------CAGCGGCAGCAGCA---------------------------------------------------GCAGCGCCA...............................................................................................24120.08100010
......................................................................................................................AGC--------------------------------------------------AGCA---GCAGCA---TCAGCAGC--------------------------A---------GC---A.......................................................................................................................................................................................................................................................................................................................................................................................25150.07100010
......................................................................................................................AGC--------------------------------------------------AGCA---GCAGCA---TCAGCAGC--------------------------A---------GC---........................................................................................................................................................................................................................................................................................................................................................................................24180.06100001
........................................................................................................................................................................................................................................................................................................................................................................................................C---------------AACAT------------------------------CAGCGGCAGCAGC............................................................................................................................................................19180.06100010
...................................................................................................................................................................................CAGCA---TCAGCAGC--------------------------A---------GC---AGC.....................................................................................................................................................................................................................................................................................................................................................................................19200.05100100
...............................................................................................................................................................................................................................................................................................................................................................AGCATCAGCGGCAGCA------------GCA......................................................................................................................................................................................................................................19200.05100010
......................................................................................................................AGC--------------------------------------------------AGCA---GCAGCA---TCAGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100010
........................................................................................................................................................................................................................................................................................................................................................................................................................AACAT------------------------------CAGCGGCAGCAGC............................................................................................................................................................18200.05100010
........................................................................................................................C--------------------------------------------------AGCA---GCAGCA---TCAGCAGC--------------------------A---------.............................................................................................................................................................................................................................................................................................................................................................................................20200.05100010
.............................................................................................................................................................................................AGCAGC--------------------------A---------GC---AGCATCAGCA..............................................................................................................................................................................................................................................................................................................................................................................19200.05100010
droVir3
TCAGCCG---------------------------------------------------------CTG--------------------------------------CCAC------AGCAAC--------------------------------------------------AACA---ACAACA---GCAACAAC--------------------------A---------ACCTCAAGAGCA---ACAA---------------------------------AAACACCAA---------AGG-----GCCGCAGCAGCCGCAG-------CAGTTGCAGCAGT-TC------------------AGCAGCAGTTG--GCGAC---------------------------------------ACAGGCA---------------------------------GCAACAGTAGCAGCAGCAG---CAG---CA---GCAGCAGC---AGCAGC------AGCA------------------G----C--------AGAAGG----------------------------------AGGAGAAGGAGTAGGAGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGG----------------------------------AGGAGAAGGAGTAGG..2111.001000000000000000001000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................A---------AGG-----GCCGCAGCAGCCGCAG-------CAGT....................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000001000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------------G----C--------AGAAGG----------------------------------AGGAGAAGGAGTAGGA.2511.001000100000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................A---ACAA---------------------------------AAACACCAA---------AGG-----GC.............................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------------G----C--------AGAAGG----------------------------------AGGAGAAGGA.......1920.501000000000000000000000000000000000000000000000000000000000001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GCA---------------------------------GCAACAGTAGCAGCAGCAG---CA.............................................................................................................................2440.251001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGTAGCAGCAGCAG---CAG---CA---G...................................................................................................................2540.251001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................A---------------------------------GCAACAGTAGCAGCAGCAG---CAG---CA---....................................................................................................................2560.171001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GCA---------------------------------GCAACAGTAGCAGCAGCA...................................................................................................................................2170.141000000000000000000000000000000000000100000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GCA---------------------------------GCAACAGTAGCAGCAGC....................................................................................................................................2080.131000100000000000000000000000000000000000000000000000000000000000
...................................................................................................................AGCAAC--------------------------------------------------AACA---ACAACA---GCAACA...................................................................................................................................................................................................................................................................................................................................................................................................................................22200.102000000000000000010000000000000000000100000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................CA---------------------------------GCAACAGTAGCAGCAGCAG---C..............................................................................................................................22100.101001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................ACAACA---GCAACAAC--------------------------A---------ACCT.........................................................................................................................................................................................................................................................................................................................................................................................19100.101001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGC---AGCAGC------AGCA------------------G----C--------A........................................................21200.102000000000000000000002000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---GCAGCAGC---AGCAGC------AGCA------------------.......................................................................20200.102000000000000000000000000000000020000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAG---CAG---CA---GCAGCAGC---AGC......................................................................................................25200.051001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG---CAG---CA---GCAGCAGC---AGCA.....................................................................................................20200.051000000000000000000000000100000000000000000000000000000000000000
....................................................................................................................GCAAC--------------------------------------------------AACA---ACAACA---GCAACA...................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGTAGCAGCAGCAG---CA.............................................................................................................................19200.051000000000000000000000000000000000000010000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAGCAGCAGCAG---CAG---CA---GCA.................................................................................................................22200.051001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---GCAGCAGC---AGCAGC------AGCA------------------G----C--------A........................................................22200.051000000000000000000000000000001000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAGCAGCAG---CAG---CA---GCAGCAGC---A........................................................................................................27200.051001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG---CA---GCAGCAGC---AGCAGC------AGC..........................................................................................22200.051000000000000000000000010000000000000000000000000000000000000000
....................................................................................................................GCAAC--------------------------------------------------AACA---ACAACA---GCAACAAC--------------------------A---------A............................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000001000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGTAGCAGCAGCAG---CA.............................................................................................................................20200.051000000000000000000000000000000000000000000000000000000000000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCAGCAGCAG---CAG---CA---GCAGCAGC---AGC......................................................................................................28200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
GCGGCGG--CTATCGCCAT------------------------------GTCTCATCG----------------------------------------------------------------AATCTGTCCACCGTCGCCGAGCAGCCTTCGGCCAATGCAGAGCCACATCAGCA---GCAGCAGCAGCAGC--------------------AGCAGCAGCA---------ACAACAACAGCA----------------------------------------------------------------------------------GCAGCAA------------------------------------------------C---AGCAAC---AACAGCAGCAACAACAACAGCAGCAGC---AGCAGCA---------------------------------------------------------------------GCAGC---AACAGC------CGCAGCCGC-----------------------------------------------------------------------------AGCCGGASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.............................................................................................................................................................................................................................................ACAGCA----------------------------------------------------------------------------------GCAGCAA------------------------------------------------C---AGCAAC---A..........................................................................................................................................................................................................................21200.408800000
...................................................................................................................................................................................................................................................................................................................................................................................................................................C---AGCAGCA---------------------------------------------------------------------GCAGC---AACAGC------.............................................................................................19200.204020020
.....................................................................................................................................................................................................................GCAGCAGCA---------ACAACAACAGCA----------------------------------------------------------------------------------GC.............................................................................................................................................................................................................................................................................................23200.102200000
............................................................................................................................................................................................................................................AACAGCA----------------------------------------------------------------------------------GCAGCAA------------------------------------------------C---AGCAAC---A..........................................................................................................................................................................................................................22200.102002000
..................................................................................................................................................................................................................................................................................................................................................................................................................................GC---AGCAGCA---------------------------------------------------------------------GCAGC---AACAGC------.............................................................................................20200.102000020
.....................................................................................................................................................................................................................................................................................................................................GCAGCAA------------------------------------------------C---AGCAAC---AACAGCAG...................................................................................................................................................................................................................22200.051100000
....................................................................................................................................................................................................................AGCAGCAGCA---------ACAACAACAGCA----------------------------------------------------------------------------------...............................................................................................................................................................................................................................................................................................22200.051000100
.......................................................................................................................................................................CATCAGCA---GCAGCAGCAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051100000
....................................................................................................................................................................................................................AGCAGCAGCA---------ACAACAACAGC..................................................................................................................................................................................................................................................................................................................................................................................21200.051100000
...............................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAACAACAGCAGC...................................................................................................................................................................................................18200.051100000
..........................................................................................................................................................................................................................................ACAACAGCA----------------------------------------------------------------------------------GCAGCAA------------------------------------------------C---AGCAAC---A..........................................................................................................................................................................................................................24200.051000010
.........................................................................................................................................................................................................................CAGCA---------ACAACAACAGCA----------------------------------------------------------------------------------G..............................................................................................................................................................................................................................................................................................18200.051100000
........................................................................................................................................................................................................................GCAGCA---------ACAACAACAGCA----------------------------------------------------------------------------------GCAGCAA------------------------------------------------C---....................................................................................................................................................................................................................................26200.051000010
.......................................................................................................................................................................CATCAGCA---GCAGCAGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051100000
.................................................................................................................................................................................................................................................CA----------------------------------------------------------------------------------GCAGCAA------------------------------------------------C---AGCAAC---AACAGCAGC..................................................................................................................................................................................................................25200.051100000
...................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAGCAGCAGC---AGC..........................................................................................................................................................................................20200.051010000
...................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAGCAGCAGC---AGCAGCA---------------------------------------------------------------------GC...............................................................................................................26200.051000010
.................................................................................................................................................................................................................................................................................................................................................................................................GCAAC---AACAGCAGCAACAAC............................................................................................................................................................................................................20200.051100000
..................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAGCAGCAGC---AGCAGCA---------------------------------------------------------------------GC...............................................................................................................27200.051100000
.....................................................................................................................................................................................................................................................................................................................................................................................................C---AACAGCAGCAACAACAACAGC......................................................................................................................................................................................................22200.051100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCAGC---AGCAGCA---------------------------------------------------------------------GC...............................................................................................................20200.051100000
.............................................................................................................................................................................................AGC--------------------AGCAGCAGCA---------ACAACAACAGCA----------------------------------------------------------------------------------GC.............................................................................................................................................................................................................................................................................................27200.051100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGCAGCAGC---AGCAGCA---------------------------------------------------------------------.................................................................................................................22200.051100000
..........................................................................................................................................................................................................................AGCA---------ACAACAACAGCA----------------------------------------------------------------------------------GCAGCAA------------------------------------------------C---A...................................................................................................................................................................................................................................25200.051100000
...............................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAACAACAGCAGCAGC---AGCAGC.......................................................................................................................................................................................27200.051000010
........................................................................................................................................................................................................................GCAGCA---------ACAACAACAGCA----------------------------------------------------------------------------------GCAG...........................................................................................................................................................................................................................................................................................22200.051100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................AGC---AGCAGCA---------------------------------------------------------------------GCAGC---AACAGC------CGCC.........................................................................................25200.051001000
..........................................................................................................................................................................................................................AGCA---------ACAACAACAGCA----------------------------------------------------------------------------------GCAGCAA------------------------------------------------C---AGC.................................................................................................................................................................................................................................27200.051100000
droGri2
GCAGCGG---------------------------------------------------------CTG--------------------------------------CAAC------AACAGC--------------------------------------------------AGCA---GCAGCG---GCAGCAGC--------------------------A---------AC---AGCAGCAGCAGGAACA------------------------------GC------AG---------CAGCAGCAGCAGC----------------------------------AGCA---------------------------GC------------------GGCGGCGGCAGCAGCAGCAGC---AGCAGCAGCAGCA---------------------------------A---CA------G---------CA------GCAGCAGCAGCAGC------ATCAGCAG-------------------CAGCTGC--AGAAGCAGCAGCAACAG-----------------------CAGCAGT-------CAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.............................................................................................................................................................................................................................................GCAGCAGCAGGAACA------------------------------GC------AG---------CA.....................................................................................................................................................................................................................................................................................................................2163.3320812
................................................................................................................................................................................................................................................GCAGCAGGAACA------------------------------GC------AG---------CA.....................................................................................................................................................................................................................................................................................................................18130.9212120
................................................................................................................................................................................................................................................GCAGCAGGAACA------------------------------GC------AG---------CAGCA..................................................................................................................................................................................................................................................................................................................2180.75642
.............................................................................................................................................................................................................................................GCAGCAGCAGGAACA------------------------------GC------AG---------CAGCA..................................................................................................................................................................................................................................................................................................................2450.60321
............................................................................................................................................................................................................................................AGCAGCAGCAGGAACA------------------------------GC------AG---------CAGCA..................................................................................................................................................................................................................................................................................................................2540.50211
................................................................................................................................................................................................................................................GCAGCAGGAACA------------------------------GC------AG---------CAG....................................................................................................................................................................................................................................................................................................................1980.50431
................................................................................................................................................................................................................................................GCAGCAGGAACA------------------------------GC------AG---------CAGC...................................................................................................................................................................................................................................................................................................................2080.50440
...................................................................................................................................................................................................................................................GCAGGAACA------------------------------GC------AG---------CAGCA..................................................................................................................................................................................................................................................................................................................18180.44880
.............................................................................................................................................................................................................................................GCAGCAGCAGGAACA------------------------------GC------A.................................................................................................................................................................................................................................................................................................................................18200.30660
........................................................................................................................................................................................................................................C---AGCAGCAGCAGGAACA------------------------------GC------AG---------CAGC...................................................................................................................................................................................................................................................................................................................2540.25101
.............................................................................................................................................................................................................................................GCAGCAGCAGGAACA------------------------------GC------AG---------CAG....................................................................................................................................................................................................................................................................................................................2250.20110
.............................................................................................................................................................................................................................................GCAGCAGCAGGAACA------------------------------GC------AG---------CAGC...................................................................................................................................................................................................................................................................................................................2350.20110
........................................................................................................................................................................................................................................C---AGCAGCAGCAGGAACA------------------------------GC------AG---------CA.....................................................................................................................................................................................................................................................................................................................2350.20110
............................................................................................................................................................................................................................................AGCAGCAGCAGGAACA------------------------------GC------AG---------CA.....................................................................................................................................................................................................................................................................................................................2250.20101
...............................................................................................................................................................................................................................................AGCAGCAGGAACA------------------------------GC------AG---------CA.....................................................................................................................................................................................................................................................................................................................19120.17202
...............................................................................................................................................................................................................................................................................................................................................................................................................................GCAGC---AGCAGCAGCAGCA---------------------------------A---CA------...................................................................................................................................21200.15330
...............................................................................................................................................................................................................................................AGCAGCAGGAACA------------------------------GC------AG---------CAGC...................................................................................................................................................................................................................................................................................................................2170.14110
...............................................................................................................................................................................................................................................AGCAGCAGGAACA------------------------------GC------AG---------CAGCA..................................................................................................................................................................................................................................................................................................................2270.14101
..............................................................................................................................................................................................................................................CAGCAGCAGGAACA------------------------------GC------AG---------CAG....................................................................................................................................................................................................................................................................................................................2170.14110
........................................................................................................................................................................................................................................C---AGCAGCAGCAGGAACA------------------------------GC------AG---------C......................................................................................................................................................................................................................................................................................................................2280.13101
............................................................................................................................................................................................................................................AGCAGCAGCAGGAACA------------------------------GC------AG---------C......................................................................................................................................................................................................................................................................................................................2180.13110
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---------CA------GCAGCAGCAGCAGC------ATC..........................................................................................20200.10220
.................................................................................................................................................................................................................................................CAGCAGGAACA------------------------------GC------AG---------CAGCA..................................................................................................................................................................................................................................................................................................................20100.10110
...........................................................................................................AC------AACAGC--------------------------------------------------AGCA---GCAGCG---GCA......................................................................................................................................................................................................................................................................................................................................................................................................................................21130.08101
..................................................................................................................................................................................GCAGCG---GCAGCAGC--------------------------A---------AC---AGC.....................................................................................................................................................................................................................................................................................................................................................................................20150.07110
.................................................................................................................................................................................................................................................................................................................AGCAGCAGC----------------------------------AGCA---------------------------GC------------------GGCGGCGG.............................................................................................................................................................................................................23200.05110
.....................................................................................................................................................................................................................................................................................................................GCAGC----------------------------------AGCA---------------------------GC------------------GGCGGCG..............................................................................................................................................................................................................18200.05110
.......................................................................................................................................................................................................................................................................................................................AGC----------------------------------AGCA---------------------------GC------------------GGCGGCGGC............................................................................................................................................................................................................18200.05110
..............................................................................................................................................................................A---GCAGCG---GCAGCAGC--------------------------A---------AC---........................................................................................................................................................................................................................................................................................................................................................................................18200.05110
...........................................................................................................................................................................................................................................................................................................................................................................................GC------------------GGCGGCGGCAGCAGCAGC...................................................................................................................................................................................................20200.05110
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCA---------------------------------A---CA------G---------CA------GCAGCAGC.........................................................................................................20200.05110
..................................................................................................................................................................................................................................................................................................................GCAGCAGC----------------------------------AGCA---------------------------GC------------------GGCGGCGG.............................................................................................................................................................................................................22200.05110
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA---------------------------------A---CA------G---------CA------GCAGCAGCAGCA.....................................................................................................21200.05110
droAna3
GCAGCAG---------------------------------------------------------CAA--------------------------------------CAAC------AGCAAC--------------------------------------------------AGCA---GCAGCA---GCACCTCCATGCC-----------------------------------CAGCAGCT---GCTG---------------------------------GCCCAGAGC---------CAGGCC----------------------------------CAGTTGCAGCAGCAACAGCAGCA---------------GCACCACC---------------------AGCAACAGCAAC---AG--GCA---------------------------------GCAGCGG---------------------CG---GCCGCAGC---GGCAGC------AGCAGCAGC------GGCCGGAGTGCACGGCC-A--GCATG-----------------------------------GGGGACATGTGTCGCACSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAGTGCACGGCC-A--GCATG-----------------------------------GGG..............2314.004300001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGC------GGCCGGAGTGCAC.................................................................2113.003000003
...................................................................................................................................................................................................ATGCC-----------------------------------CAGCAGCT---GCTG---------------------------------GCCCAGAGC---------CA.....................................................................................................................................................................................................................................................................................................................2812.002000002
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGG---------------------CG---GCCGCAGC---GGCAGC------A............................................................................................2212.002200000
...................................................................................................................................................................................................ATGCC-----------------------------------CAGCAGCT---GCTG---------------------------------GCCCAGAGC---------C......................................................................................................................................................................................................................................................................................................................2711.001000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAGTGCACGGCC-A--GCATG-----------------------------------GG...............2211.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGC------GGCCGGAGTGCACG................................................................1911.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCGG---------------------CG---GCCGCAGC---GGCAGC------.............................................................................................2320.501010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................GCAAC---AG--GCA---------------------------------GCAGCGG---------------------C........................................................................................................................1820.501010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC---GGCAGC------AGCAGCAGC------GGCC..........................................................................2170.292010001
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGC---GGCAGC------AGCAGCAGC------GGC...........................................................................2280.131010000
..........................................................................................................AAC------AGCAAC--------------------------------------------------AGCA---GCAGCA---GCA......................................................................................................................................................................................................................................................................................................................................................................................................................................22200.102011000
.....AG---------------------------------------------------------CAA--------------------------------------CAAC------AGCAAC--------------------------------------------------AGCA---GC................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.102000200
................................................................CAA--------------------------------------CAAC------AGCAAC--------------------------------------------------AGCA---GCAGCA---GC.......................................................................................................................................................................................................................................................................................................................................................................................................................................25120.081010000
.................................................................AA--------------------------------------CAAC------AGCAAC--------------------------------------------------AGCA---GCAGCA---GC.......................................................................................................................................................................................................................................................................................................................................................................................................................................24120.081010000
.....AG---------------------------------------------------------CAA--------------------------------------CAAC------AGCAAC--------------------------------------------------AGCA---GCAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................24130.081000001
...GCAG---------------------------------------------------------CAA--------------------------------------CAAC------AGCAAC--------------------------------------------------AGCA---GCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................24140.071010000
..................................................................A--------------------------------------CAAC------AGCAAC--------------------------------------------------AGCA---GCAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051001000
...........................................................................................................AC------AGCAAC--------------------------------------------------AGCA---GCAGCA---GC.......................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051010000
..AGCAG---------------------------------------------------------CAA--------------------------------------CAAC------AGCAAC--------------------------------------------------AGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051010000
.................................................................AA--------------------------------------CAAC------AGCAAC--------------------------------------------------AGCA---GC................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051010000
............................................................................................................C------AGCAAC--------------------------------------------------AGCA---GCAGCA---GCA......................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000001
...GCAG---------------------------------------------------------CAA--------------------------------------CAAC------AGCAAC--------------------------------------------------AGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051010000
..AGCAG---------------------------------------------------------CAA--------------------------------------CAAC------AGCAAC--------------------------------------------------AGCA---..................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051010000
droBip1
GCAGGCG---------------------------------------------------------CAG--------------------------------------CAGC------AACAAC--------------------------------------------------AGCA---GCAGCA---GCAGCA--------------------------------------ATCCCAGCAGCAACAGCAACA------------------------------GC------AG---------GCGGTGGTGCTCC----------------------------------ACCA---------------------------GCAGCAGC---AGCAACAACAACAGCAGCAGCAAAAG---------------C---A---------------------------CCAACAGCA---------TCAGCACCAGCA---------------GCAGC------------------------AGCAGGT-------TC--TGCACCAGCAGGCTCAACTGGTGG-CGCCCCAA-AACA--TTGTCCAGCAGGCTGGASizeHit CountTotal NormTotal
No Reads
droKik1
GCAGCAG---------------------------------------------------------CAC--------------------------------------CACC------AGCAGC--------------------------------------------------AGCA---CCAGCA---GCAGCA--------------------------------------GCACCAGCAGCAGCAGCTCCA------------------------------GC------AG---------CAGCAGCACCAGC----------------------------------AGCA---------------------------GCACCACC---AGC---------------AGCAG---CAGCACCAG------------------------------------CAGCAGCAGCA---------C---------------------------CAGC------AGCAGCAGCACCAGCAGCAGCAGCA------CAC--AGCAGCAGCAGCAAC----------------------------------AGCAGCAGSizeHit CountTotal NormTotal
No Reads
droFic1
GCTACAG---------------------------------------------------------CAG--------------------------------------CAAC------AACGGC--------------------------------------------------AGCA---GCAGCC---GCAGCAGC--------------------------A---------TC---AGCAGCAGCCGCAGCA------------------------------GC------AT---------CAGCAGCAGCCGC----------------------------------AGCAGCATCAGCAGCAGCCG---------CAGC---AGC------------------------------------AT---------CAACAGCAGCCGAAGCAGCAACAACAGCAGCAACAACG---------G------------------CGGCAGCGACAGC------AGCAGCAGC------CGCAGCAGCA-GCTGCGCA------------------------------------------AGCGCGAGGCGTCGGCGSizeHit CountTotal NormTotal
No Reads
droEle1
GGCGTCG--CTGTCGATGATCACCA-----------------------GA--TCATCG----------GAGCCGGAGGCCACATCC-----------------------AGCGGTG-----------------------------------------------------------------------------------------GCGAACCGGC------GGTAGAAGTGG---AAG----------------------------------------------------------------------------------------------------------------C---------------AGCA---------GC---AGCA---GCAGCAGCAGCAGCGGCAGCAGCAGCA------------------------------------------GCAGC---------------------------T------ACAGC---GGCAGC------AGCAGCTGC------AGCCGCCGAG-GAGG--------AAG-----------------------------------TGGAGGACATGC--CGGSizeHit CountTotal NormTotal
No Reads
droRho1
GCCGCGG---------------------------------------------------------CAA--------------------------------------CAGC------AACTGC--------------------------------------------------AGCG---GCGACG---GCGGCGGC--------------------------G---------AC---GGCAACATC------A------------------------------ACCTCAGCAA---------CA------TCTGCGG----------------CGGCAACAGCAACAGC------------------AGCG---------GC---GAC------------------------------------AG------C---AGCAACATCTGCGGCAACAACGGCAGCGGCGG--GGA---------GCAGCAG---CA---GTGGCAGT---GGCAGC------AGCG---------------------------------------------GCAG-------TGGCAG----------TAG--TACAACCACAACSizeHit CountTotal NormTotal
No Reads
droBia1
GCTGGCGCCGGAGCGGCGGCCTCCAGCAAGGACTTTCACATGATCATGAACACCGCCGTGGCAGCG-----------------------------------------GCAGCAGCA-----------------------------------------------------------------------------------------GCCGCCCAGC------AGCAACAGCAA---CAC----------------------------------------------------------------------------------------------------------------C---------------AGCA---------AC---ACCA---GCAACAGCAGCTCCAGCAACAGCAGCA------------------------------------------CCAGCAACAGCA---------GCAGCACCAGCA---GCAGCACC---AGCAGC------AGCAGCAAC----------------------------------------------------------------------------AGTCGCAGSizeHit CountTotal NormTotal
No Reads
droTak1
GCTCATC---------------------------------------------------------GTCCAACTCCAGCTCCAGTTCGAGTCGCAGCGAGCTTTC----CAAGAA---------------------------------------GCAGAAGAAGAGC-----------------------------------------------------TCCA---------GCAGCAGCAG-------------------------------------------------------------------------------------------CGGCAGCGGCAGTGGC------------------AGCAGCTCCTCCAGCGGCTCC---------------------------------T------CCAGC--GAGGATGAGCCGGAGCA------------------GGA---------G---------------------------CAGC------AGCAGCAGC---------------T-CCGAT------------------------------TGCCCGAACAGCAGCAGCA--GCAGGAGGAGGSizeHit CountTotal NormTotal
No Reads
droEug1
AGCAACA-----------------------------------------------------------G------------------------------------CC--------------A-A-----AACAAC--------------------------------------GGCAGCGACAACA---GCAGCAGC--------------------------G---------TC---AACAGCG---GCAG---------------------------------CGACGACAG---------CG----------------------GCAGCGA------CGAC------AGCGGCAGCGACGACAGCG------------GCGGCGAC---GAC---------------AGCGG---CAGCG------------ACA---------------G---------CAGCGGCGGCG---------A---------------------------CAGC------AGCGGCGGC------GACAGCAGCG-GCAGCGAT--AACAG-----------------------------------CGGCAGCGACGACGGCGSizeHit CountTotal NormTotal
No Reads
dm3
GATGGCG--CTTGCGTTTAT-----------------------TTCGGGGGCTCGGCGTGGCAGCA-----------------------------------------GCAGCAGCA-----------------------------------------------------------------------------------------TCAGCTCAGCAACAGCA---------ACACCAACAGCG----------------------------------------------------------------------------------GCAGCAA------------------------------------------------C---ATCTGC---AGCAGCAGCAGCGGCAGCAGCAGCAAC---ATCCGCAGCATCA---------------------------------A---CA------T---------CC------GCAGCA---GCAGC------AGCAGCAGC------AAATACAGCAGGCGGCCGT--AAAAG-----------------------------------GGGCAGAAGTGGCGGCGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCA---------------------------------A---CA------T---------CC------GCAGCA---GCAGC------.............................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................ACACCAACAGCG----------------------------------------------------------------------------------GCAGCA.........................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---GCAGC------AGCAGCAGC------AAATA.........................................................................2140.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................CAGCAA------------------------------------------------C---ATCTGC---AGCAGCAG...................................................................................................................................................................................................................2150.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAAC---ATCCGC.......................................................................................................................................................................................2060.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATACAGCAGGCGGCGT............................................................1860.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA---GCAGC------AGCAGCAGC------A.............................................................................19200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCGGCAGCAGCAG....................................................................................................................................................................................................21200.1530000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010010000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCGGCAGCAGCAGCAAC---A............................................................................................................................................................................................2480.1310000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................GCAGCA-----------------------------------------GCAGCAGCA-----------------------------------------------------------------------------------------TCAGCTCC...............................................................................................................................................................................................................................................................................................................................................................................................................2390.1110000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCGGCAGCAGCAGC...................................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCGGCAGCAGCAGC...................................................................................................................................................................................................22170.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................C---AGCAGCAGCAGCGGCAGCAGC......................................................................................................................................................................................................22180.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCGGCAGCAGCA.....................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCGGCAGCAGCAGC...................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
............................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCGGCAGCAGCAG....................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCGGCAGCAGCAGC...................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
............................................................GCAGCA-----------------------------------------GCAGCAGCA-----------------------------------------------------------------------------------------TCA....................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCGGCAGCAGCAGCA..................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000
droSim2
GCAGCCG---------------------------------------------------------CAG--------------------------------------CAAC------ATCCGC--------------------------------------------------AACA---GCAGCA---GCACCAAC--------------------------A---------GC---AGCAGCAGCAGCAACACGTGGCCCACGGAAAGAAGGCAGCCAGAAAACA------C----------------------------------------------------------C---------------AGCA------------ACATCT---GCAGCAACAGCAACAGCAGCAACAACAGC---AACAGCAGCAGCA---------------------------------A---CA------G---------CAGCAGCAGCAGC---AACAGC------AGCAGCAAC----------------------------------------------------------------------------AGACCAGTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---CA------G---------CAGCAGCAGCAGC---AACAGC------AG...........................................................................................25201.3026000002600000000000
..............................................................................................................................................................................A---GCAGCA---GCACCAAC--------------------------A---------GC---........................................................................................................................................................................................................................................................................................................................................................................................18151.1317000017000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................T---GCAGCAACAGCAACAGCA...........................................................................................................................................................................................................19111.0011000001100000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGC---AACAGC------AGCAGCAAC----------------------------------------------------------------------------........20200.05100000000001000000
droSec2
TG--CCC--CCGGCGCCTAC---CT--------------------------------------------AC---------------------------------C--------------C-GAGATAATCCCT----------------------------------------------------------ACTCGCGCCACACCCAAATTCAGCAACAGCA---------GCAGCAGCAACA----------------------------------------------------------------------------------GCAGCAA------------------------------------------------C---AGCAGC---AACAGCAGCAGCAACAGCAGCAGCAGC---AG------C---TGCAACAGCA------------------------A---CA------G---------CA------ACAGCA---ACAGC------AGCAG-----------GCTGCAGCG-TCGA-------------------------------TGCCCGAATATCAG-AGGGCAGCAGCTCGAGCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG-AGGGCAGCAGCTCGAGC1911.0010010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC------AGCAG-----------GCTGCAGCG-TCGA-------------------------------TGCCCGA.........................2811.0010100
.........................................................................................................................................................................................................................................................................................................................................CAA------------------------------------------------C---AGCAGC---AACAGCAGCAGCAA.............................................................................................................................................................................................................24200.1530030
.................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAGCAGCAGCAGC---AG------C---T................................................................................................................................................................................2380.1310010
....................................................................................................................................................................................................................................................................................................................................................................................................GC---AACAGCAGCAGCAACA...........................................................................................................................................................................................................18200.1020020
..................................................................................................................................................................................................................................................A----------------------------------------------------------------------------------GCAGCAA------------------------------------------------C---AGCAGC---AACAGCA....................................................................................................................................................................................................................22200.1020020
..................................................................................................................................................................................................................................................................................................................................................................................................CAGC---AACAGCAGCAGCAA.............................................................................................................................................................................................................18200.1020020
...................................................................................................................................................................................................................CAGCAACAGCA---------GCAGCAGCAACA----------------------------------------------------------------------------------GCA............................................................................................................................................................................................................................................................................................26180.0610010
..................................................................................................................................................................................................................................................A----------------------------------------------------------------------------------GCAGCAA------------------------------------------------C---AGCAGC---AACAGCAGC..................................................................................................................................................................................................................24200.0510010
.........................................................................................................................................................................................................................................AGCAGCAACA----------------------------------------------------------------------------------GCAGCAA------------------------------------------------C---AGCAGC---...........................................................................................................................................................................................................................24200.0510010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCA------------------------A---CA------G---------CA------ACAGCA---ACA.....................................................................................................22200.0510010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCA------------------------A---CA------G---------CA------ACAGC............................................................................................................18200.0511000
........................................................................................................................................................................................................................................CAGCAGCAACA----------------------------------------------------------------------------------GCAGCAA------------------------------------------------C---....................................................................................................................................................................................................................................19200.0510010
.............................................................................................................................................................................................................................A---------GCAGCAGCAACA----------------------------------------------------------------------------------GCAGCA.........................................................................................................................................................................................................................................................................................19200.0510010
droYak3
ACTGTGG---------------------------------------------------------CAG---------TGGCAACAGCAG---------------GT--------------G-T----------------------------------------------------------AGCG---ACAGGGGC--------------------------A---------GC---AACAGGAGCAGCAGCA------------------------------GGGGCAGCAGCAGGGGCAGCA----------------------GCAG---GGGCAGCAGCAGGGG------------------------------CAGCAGCAGG---GG---------------------------------------CAGCA---G---CAGGGGCAGCAGCAGGGGCAGCAGCAGGG---------G---------------------------CAGC------AGCAGTGGC------AGCAGCAGGG-GCAGCAGC--AGTGG-----------------------------------CAGCAGTAGTGGCAGCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................................................................................................GT--------------G-T----------------------------------------------------------AGCG---ACAGGGGC--------------------------A---------GC---AACAG...................................................................................................................................................................................................................................................................................................................................................................................24110.64707000000000
.........................................................................................................................T----------------------------------------------------------AGCG---ACAGGGGC--------------------------A---------GC---AACAGGAGC...............................................................................................................................................................................................................................................................................................................................................................................2580.25202000000000
.......................................................................................................GT--------------G-T----------------------------------------------------------AGCG---ACAGGGGC--------------------------A---------GC---AACAGG..................................................................................................................................................................................................................................................................................................................................................................................25110.18202000000000
............................................................................TGGCAACAGCAG---------------GT--------------G-T----------------------------------------------------------AGCG---ACAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................25120.17202000000000
........................................................................................................T--------------G-T----------------------------------------------------------AGCG---ACAGGGGC--------------------------A---------GC---AACAGGAG................................................................................................................................................................................................................................................................................................................................................................................2680.13101000000000
.....................................................................................CAG---------------GT--------------G-T----------------------------------------------------------AGCG---ACAGGGGC--------------------------A---------GC---AA......................................................................................................................................................................................................................................................................................................................................................................................24110.09101000000000
........................................................................................................T--------------G-T----------------------------------------------------------AGCG---ACAGGGGC--------------------------A---------GC---AACAGG..................................................................................................................................................................................................................................................................................................................................................................................24110.09101000000000
.....................................................................................CAG---------------GT--------------G-T----------------------------------------------------------AGCG---ACAGGGGC--------------------------A---------GC---AAC.....................................................................................................................................................................................................................................................................................................................................................................................25110.09100000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGC------AGCAGTGGC------AGCAGCAGGG-...................................................................23110.09101000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC------AGCAGTGGC------AGCAGCAGGG-G..................................................................22110.09101000000000
...................................................................................AGCAG---------------GT--------------G-T----------------------------------------------------------AGCG---ACAGGGGC--------------------------A---------GC---AA......................................................................................................................................................................................................................................................................................................................................................................................26110.09101000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC------AGCAGTGGC------AGCAGCAGGG-...................................................................21110.09101000000000
.................................................................................ACAGCAG---------------GT--------------G-T----------------------------------------------------------AGCG---ACAGGG...................................................................................................................................................................................................................................................................................................................................................................................................................................21120.08100010000000
...GTGG---------------------------------------------------------CAG---------TGGCAACAGCAG---------------GT--------------G-T----------------------------------------------------------................................................................................................................................................................................................................................................................................................................................................................................................................................................23120.08101000000000
..............................................................................GCAACAGCAG---------------GT--------------G-T----------------------------------------------------------AGCG---ACAGGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................25120.08101000000000
.............................................................................GGCAACAGCAG---------------GT--------------G-T----------------------------------------------------------AGCG---ACAGGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................26120.08100000000001
...................................................................................AGCAG---------------GT--------------G-T----------------------------------------------------------AGCG---ACAGGGGC--------------------------A---------GC---A.......................................................................................................................................................................................................................................................................................................................................................................................25120.08101000000000
....TGG---------------------------------------------------------CAG---------TGGCAACAGCAG---------------GT--------------G-T----------------------------------------------------------AGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................25120.08101000000000
................................................................................AACAGCAG---------------GT--------------G-T----------------------------------------------------------AGCG---ACAGGGGC--------------------------A---------GC---........................................................................................................................................................................................................................................................................................................................................................................................27120.08101000000000
............................................................................................................................................................................................................................................................................................GGCAGCAGCAGGGGCAGCA----------------------GC.............................................................................................................................................................................................................................................................................................21200.05101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGG---GG---------------------------------------CAGCA---G---CAGG.....................................................................................................................................................................20200.05101000000000
.............................................................................................................................................................................................................................................................................................................................................GGCAGCAGCAGGGG------------------------------CAGCAGC....................................................................................................................................................................................................................................21200.05101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGC------AGCAGCAGGG-GCAGCAGC--.........................................................21200.05101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA---G---CAGGGGCAGCAGCAGG.........................................................................................................................................................20200.05101000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGGCAGCAGCAGGG---------G---------------------------CAGC------.............................................................................................21200.05101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................GG---------------------------------------CAGCA---G---CAGGGGCAGCAGC............................................................................................................................................................21200.05101000000000
................................................................................................................................................................................................................................................................................................GCAGCAGGGGCAGCA----------------------GCAG---G.......................................................................................................................................................................................................................................................................................20200.05101000000000
......................................................................................................................................................................................................................................................................................................................................................AGGGG------------------------------CAGCAGCAGG---GG---------------------------------------CAGC.................................................................................................................................................................................21200.05101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGGG-GCAGCAGC--AGTGG-----------------------------------CAG..............26200.05101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGGGGCAGCAGCAGG.............................................................................................................................................20200.05101000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGGCAGCAGCAGGGGCAGC...................................................................................................................................................21200.05101000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGCAGCAGGGGCAGCAGC................................................................................................................................................21200.05101000000000
........................................................................................................................................................................................................................................................................................................GGCAGCA----------------------GCAG---GGGCAGCAGC..............................................................................................................................................................................................................................................................................21200.05101000000000
............................................................................................................................................................................................................................................................................................................GCA----------------------GCAG---GGGCAGCAGCAGG...........................................................................................................................................................................................................................................................................20200.05101000000000
.................................................................................................................................................................................................................................................................................................................................................GCAGCAGGGG------------------------------CAGCAGCAGG---..............................................................................................................................................................................................................................20200.05101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGCAGCAGGG---------G---------------------------CAGC------AGC..........................................................................................21200.05101000000000
................................................................................................................................................................................................................................................................................................................................................................................................AGG---GG---------------------------------------CAGCA---G---CAGGGGCAGC...............................................................................................................................................................21200.05101000000000
.....................................................................................................................................................................................................................................................................................................AGGGGCAGCA----------------------GCAG---GGGCAGC.................................................................................................................................................................................................................................................................................21200.05101000000000
.........................................................................................................................................................................................................................................................................................................................................................GG------------------------------CAGCAGCAGG---GG---------------------------------------CAGCA---G---C........................................................................................................................................................................21200.05101000000000
......................................................................................................................................................................................................................................................GCAGCA------------------------------GGGGCAGCAGCAGG............................................................................................................................................................................................................................................................................................................................20200.05101000000000
...........................................................................................................................................................................................................................................................A------------------------------GGGGCAGCAGCAGGGGCAGC......................................................................................................................................................................................................................................................................................................................21200.05101000000000
.......................................................................................................................................................................................................................................................................................................................................AG---GGGCAGCAGCAGGGG------------------------------CAGC.......................................................................................................................................................................................................................................21200.05101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGGG---------G---------------------------CAGC------AGCAGTGGC------AG............................................................................26200.05101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGGG---------G---------------------------CAGC------AGCAGTGG.....................................................................................24200.05101000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C------AGCAGCAGGG-GCAGCAGC--AGTGG-----------------------------------.................24200.05101000000000
droEre2
GATGGCG--CTTGCGTTTAT-----------------------TTCGGGGGCTCGGCGTGGCAGCA-----------------------------------------GCAGCAGCA-----------------------------------------------------------------------------------------TCAGCTCAGCAACAGCA---------ACACCAACAGCG----------------------------------------------------------------------------------GCAGCAA------------------------------------------------C---ATCTGC---AGCAGCAGCGGCGGCGGCAGCAGCAGC---ATCCGCAGCATCA---------------------------------A---CA------T---------CC------GCAGCAGCAGCAGC------AGCAGCAGC------AAACACAGCAGGCGGCCGT--AAAAG-----------------------------------GGGCAGAAGTGGCGGCGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................C---AGCAGCAGCGGCGGCGGCAGCAGC...................................................................................................................................................................................................2530.3310100000
..................................................................................................................................................................................................................................................................................................................................................................................................CTGC---AGCAGCAGCGGCGGC............................................................................................................................................................................................................1930.3310100000
...................................................................................................................................................................................................................................................................................................................................................................................................TGC---AGCAGCAGCGGCGGCGGC.........................................................................................................................................................................................................2130.3310000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGC---ATCCGCAGC....................................................................................................................................................................................1960.1710000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGC---ATCCGCAGC....................................................................................................................................................................................1870.1410000010
...............................................................................................................................................................................................................................................................................................................................................................................................................AGCGGCGGCGGCAGCAGCAGC---.............................................................................................................................................................................................21110.0910000010
.......................................................................................................................................................................................................................................................................................................................................AGCAA------------------------------------------------C---ATCTGC---AGCAGCAGC..................................................................................................................................................................................................................21110.0910000010
....................................................................................................................................................................................................................................................................................................................................................................................................GC---AGCAGCAGCGGCGGCGGC.........................................................................................................................................................................................................20160.0610000010
....................................................................................................................................................................................................................................................................................................................................................................................................GC---AGCAGCAGCGGCGGCG...........................................................................................................................................................................................................18200.0510000100

Generated: 05/18/2015 at 06:03 AM