ID:

dps_3035

 Coordinate:

XR_group6:4222212-4222487 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-27.4 -26.8 -26.7

Flybase annnotation

exon [dpse_GLEANR_12496:2]; CDS [Dpse\GA19925-cds]; CDS [Dpse\GA19925-cds]; exon [dpse_GLEANR_12496:1]; intron [Dpse\GA19925-in]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TGAAGGGCACAGCCCTAAATGTGGCCGAATATTTAACGCCAGTGCTAAAGGTATTGTTGTTTCTCTATTTGTTGTTGCGCTGGAACGGAGATTGGAATCTCTGATAGATCAAAAATCGGCTGCAAATCTATACACATATAGATATGTCTGCGTGCTGGACAACAAAGGGGTCTTTCCATTCATTATTGATTGCCCCTTTCCACGACTTCGGCCAGCCCCCCAGGCGCTCATGCCTGGGCCGCCGACTGGCGTCCAACTGGCGACGCATACATTTCAATCAATTAAACACGCCCTCAGCACCCCTATTAATTTTCCCTTTCTTCTAGGAGTCCAAATTTCGCGAGACTGGCGTACTGACGCCCGAGGAGTTTGTGGC
*********************************************************************(((((((((((.....(((((((....)))))))...(((.....))).((.(((.(((((((....))))))).)))..))))))..)))))))...(((....)))..***************************************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 M022
male body		 SRR902010
ovaries
..........................................................................................................................................................................................................................................................................................................................................................TGGCGTACTGACGCCCGAGGA......... 21 0 1 1.00 1 1 0 0
.....................................................................TGTTGTTGCGCTGGAACGG................................................................................................................................................................................................................................................................................................ 19 0 1 1.00 1 1 0 0
.................................................................................................................................................................................................................................................................................................................................................TCGCGAGACTGGCGTACTGACGC................ 23 0 1 1.00 1 0 0 1
................................................................................TGGAACGGAGATTGGAATC..................................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0
.........................CGAATATTTAACGCCAGTGCT.......................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0
...........................................................................................................................................................................................................................................................................................................................................CAAATTTCGCGAGACTGGC.......................... 19 0 1 1.00 1 1 0 0
......................................................................................................................................................................................................................................TGCCTGGGCCGCCGACTGT............................................................................................................................... 19 1 1 1.00 1 1 0 0
..............................................................................................................................................................ACAACAAAGGGGTCTTTCCAT..................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0
................................................................................................................................................................................................................................................GACGGCTGGGGTCCAACTGGC................................................................................................................... 21 3 1 1.00 1 1 0 0
.................................TAACGCCAGTGCTAAAGGA.................................................................................................................................................................................................................................................................................................................................... 19 1 1 1.00 1 1 0 0
.........................................................................................................................................................................................................................................................................................................................................TCCAAATTTCGCGAGACTGGC.......................... 21 0 1 1.00 1 1 0 0
.................................................................TATTTGTTGTTGCGCTGGAAC.................................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0
.................................................................................................................................................................................................................................................................................................................................................TCGCGAGACTGGCGTACTGACGCCCGA............ 27 0 1 1.00 1 1 0 0
........................................................................................................................................................................................................................................................................................................................................GTCCAAATTTCGCGAGACT............................. 19 0 1 1.00 1 1 0 0
.............................................................................................................................................................................................TTGCCCCTTTCCACGACTTCG...................................................................................................................................................................... 21 0 1 1.00 1 1 0 0
..............................................................................................................................................................................................................................................CCGCCGACTGGCGTCCAACTG..................................................................................................................... 21 0 1 1.00 1 1 0 0
...............................................................CATATTTGTTGTTGCGCTGGAA................................................................................................................................................................................................................................................................................................... 22 2 1 1.00 1 1 0 0
................................................................................................................................................................................................................................................................................................................................................TTCGCGAGACTGGCGTGCTGA................... 21 1 1 1.00 1 1 0 0
...............................................................................................................................................................................................................................................................................................................................................................TACTGACGCCCGAGGAGTTTGTGGC 25 0 1 1.00 1 1 0 0
............................................................................................................................................................................................................................................................................................................................................................GCGTACTGACGCCCGAGGAGT....... 21 0 1 1.00 1 1 0 0
.........................................................................................................................................ATAGATATGTCTGCGTGCTGG.......................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0
........................................................................................................................................................................................................................................................................................................................................GTCCAAATTTCGCGAGACTGG........................... 21 0 1 1.00 1 1 0 0
...............................................................................................................................................................................................GCCCCTTTCCACGACTTCGG..................................................................................................................................................................... 20 0 1 1.00 1 1 0 0
...........................................................................................................................................AGATATGTCTGCGTGCTGGA......................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0
...................................................................................................................................................................................................................................................................................................................................................GCGAGACTGGCGTACTGACGCCCGAGGAG........ 29 0 1 1.00 1 0 1 0
..................................................................................................................................................................................................................................................................................................................................................CGCGAGACTGGCGTACTGAC.................. 20 0 1 1.00 1 1 0 0
................................TTAACGCCAGTGCTAAAGGTA................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0
........................................................................TGTTGCGCTGGAACGGAGATT........................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0
..........................GAATATTTAACGCCAGTGCT.......................................................................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0
........................CCGAATATTTAACGCCAGTGC........................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0
...............................................................TCTATTTGTTGTTGCGCTGGA.................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0
........................................................................................................................................................................................................................................................................................................................................................ACTGGCGTACTGACGCCCGAG........... 21 0 1 1.00 1 1 0 0
..........................................................................................................................................................................................................................................................................................TAAACACGCACTCATTACCC.......................................................................... 20 3 3 0.33 1 1 0 0

Anti-sense strand reads

ACTTCCCGTGTCGGGATTTACACCGGCTTATAAATTGCGGTCACGATTTCCATAACAACAAAGAGATAAACAACAACGCGACCTTGCCTCTAACCTTAGAGACTATCTAGTTTTTAGCCGACGTTTAGATATGTGTATATCTATACAGACGCACGACCTGTTGTTTCCCCAGAAAGGTAAGTAATAACTAACGGGGAAAGGTGCTGAAGCCGGTCGGGGGGTCCGCGAGTACGGACCCGGCGGCTGACCGCAGGTTGACCGCTGCGTATGTAAAGTTAGTTAATTTGTGCGGGAGTCGTGGGGATAATTAAAAGGGAAAGAAGATCCTCAGGTTTAAAGCGCTCTGACCGCATGACTGCGGGCTCCTCAAACACCG
*****************************************************************************************************************************************************************************************************(((((((((((.....(((((((....)))))))...(((.....))).((.(((.(((((((....))))))).)))..))))))..)))))))...(((....)))..********************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 M059
embryo
 V112
male body		 GSM444067
head
..............................................................................................................................................................................................ACGGGGAAAGGTGCTGAAGC...................................................................................................................................................................... 20 0 1 2.00 2 2 0 0 0
........................................................................................................................................................................................................................................................................................................................................................TGACCGCATGACTGCGGGCTCCT......... 23 0 1 2.00 2 2 0 0 0
...................................................................................................................................................................................................................................................CTGACCGCAGGTTGACCGCTGC............................................................................................................... 22 0 1 1.00 1 1 0 0 0
...........................................................................ACGCGACCTTGCCTCTAACCT........................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0
......................................................................................................................................................................CCCCAGAAAGGTAAGTAATAA............................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0
...............................................TTCCATAACAACAAAGAGATA.................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0
.....................................................................................................................................................................................................................TCGGGGGGTCCGCGAGTACG............................................................................................................................................... 20 0 1 1.00 1 1 0 0 0
...........................................................................................................................................................................................................................................................................ATGTAAAGTTAGTTAATTTG......................................................................................... 20 0 1 1.00 1 1 0 0 0
..............................................................................................................................................................................................................................................................................................................................AGAAGATCCTCAGGTTTAAAG..................................... 21 0 1 1.00 1 1 0 0 0
........................................................................................................................................................................................................................................................CGCAGGTTGACCGCTGCGTATGTAAAG..................................................................................................... 27 0 1 1.00 1 0 1 0 0
.................................................................................................................................................................................................GGGAAAGGTGCTGAAGCCGGTC................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0
..............................................................................................................................................................................................................................................................................................................................AGAAGGTCCTCAGGTTTAAA...................................... 20 1 1 1.00 1 1 0 0 0
............................................................................................................................................................................................................................................................................................TTGTGCGGGAGTCGTGGGGA........................................................................ 20 0 1 1.00 1 1 0 0 0
................................................................................................................................................................................................................................................CGGCTGACCGCAGGTTGACCG................................................................................................................... 21 0 1 1.00 1 1 0 0 0
.................................................................................................................................................................................................................................................GGCTGACCGCAGGTTGACCGC.................................................................................................................. 21 0 1 1.00 1 1 0 0 0
...................................................................................................................................................................................................GAAAGGTGCTGAAGCCGGTCG................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0
................................................................................................................................................................................................GGGGAAAGGTGCTGAAGCCGG................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0
..................................................................................................................TTGCCGACGTTTAGATATGTGT................................................................................................................................................................................................................................................ 22 1 1 1.00 1 1 0 0 0
...................................................................................................................AGCCGACGTTTAGATATGTGT................................................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0
................................................................................................................................................................................................................................................................................................................................AAGATCCTCAGGTTTAAAG..................................... 19 0 1 1.00 1 1 0 0 0
..........................................................................................................................................................................................................................................................CAGGTTGACCGCTGCGTATGT......................................................................................................... 21 0 1 1.00 1 1 0 0 0
....................................................................................................................................................................................................................................................................................................................................................................TGCGGGCTCCTCAAACACCG 20 0 1 1.00 1 1 0 0 0
...........................................................................................................................................................................................................................................................................................................................................................CCGCATGACTGCGGGCTCCTC........ 21 0 1 1.00 1 1 0 0 0
...................................................................................................................................................................................................................................................................................................................................................CGCTCTGACCGCATGACTGCGG............... 22 0 1 1.00 1 1 0 0 0
................................................................GATAAACAACAACGCGACCTT................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0
.....................................................................................................................................................................................................................................................................CTGCGTATGTAAAGTTAGTTA.............................................................................................. 21 0 1 1.00 1 1 0 0 0
............................................................................................................................................................................................................................................................................................TTGAGTGGGAGCCGTGGGGAT....................................................................... 21 3 1 1.00 1 1 0 0 0
......................................................................................................................................................................................................AGGTGCTGAAGCCGGTCG................................................................................................................................................................ 18 0 1 1.00 1 1 0 0 0
.....................................................................................................................................................................................................AAGGTGTTGAAGGCGGTCGG............................................................................................................................................................... 20 2 2 0.50 1 1 0 0 0
......................................................................................................................................................................................................................CGGGGGTTCCGCGGGTACGG.............................................................................................................................................. 20 2 3 0.33 1 0 1 0 0
..............................................................................................................................................................................................................................................................................................GAGTGGGAGTCGTGGGGAT....................................................................... 19 2 3 0.33 1 1 0 0 0
..........................................................................................................................................................................................................................................ACCCGGCGTCCGACCGGAGGTT........................................................................................................................ 22 3 4 0.25 1 1 0 0 0
..................................................................................................................................................................................................................................GCGTACGGACCCGGCCGCAG.................................................................................................................................. 20 3 8 0.13 1 0 0 0 1
.............................................................................................................................................................................................................GAAGCGGGTCGGGTGGTTC........................................................................................................................................................ 19 3 20 0.10 2 1 0 1 0
.................................ACTGCGATCACGAATTCCA.................................................................................................................................................................................................................................................................................................................................... 19 3 16 0.06 1 1 0 0 0
.......................................................................................................................................................................................................GGTGTTGAAGGCGGTCGGCG............................................................................................................................................................. 20 3 20 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 XR_group6:4222162-4222537 - dps_3035 TGAAGGGCACAGCCCTAAATGTGGCCGAATATTTAACGCCAGTGCTAAAGGTATTG------------------------------------------------TTGTTTCTCTAT--------TTGTTGTTGCGCTGGAA---CGGAGATTGGAATCTCTGATAGATCAAAAATCGGCTGC--------------------AAATCT-------------------------------------------------------------------------------------------A--------TACAC-----ATATAGATATGTCTGCGTGCTGG--------------------------------------------------------------------------------------------------------------------------------------A-CAACA-----------AAGGGGTCTT-----------TCCA--TTC-A---TTATTGATTGCCCC-T-------TTCCACG--ACTTC-GGCCAGCCCCCCAGGCGCTCATGCCTGGGCCGCCGACTGGCGTCCAACTGGCGACGCATACATTTCAATCAATTAAACACGCCCTCAGCACCCCTATTAAT-------T------------------------------------------------------------------------TTCCC--TT--TCTTCTAGGAGTCCAAATTTCGCGAGACTGGCGTACTGACGCCCGAGGAGTTTGTGGC
droPer2 scaffold_9:2512793-2513168 - TGAAGGGCACAGCCCTAAATGTGGCCGAATATTTAACGCCAGTGCTAAAGGTATTG------------------------------------------------TTGTTTCTCTAT--------TTGTTGTTGCGCTGGAA---CGGAGATTGAAATCTCTGATAGATCAAAAATCGGTTGC--------------------AAATCT-------------------------------------------------------------------------------------------A--------TACAC-----ATATAGATATGTCTGCGTGCTGG--------------------------------------------------------------------------------------------------------------------------------------A-CAACA-----------AAGGGGTCTT-----------TCCA--TTC-A---TTATTGATTGCCCC-T-------TTCCACG--ACTTC-GGCCAGCCCCCCAGGCGCTCATGCCTGGGCCGCCGACTGGCGTCCAACTGGCGACGCATACATTTCAATCAATTAAACACGCCCTCAGCACCCCTATTAAT-------T------------------------------------------------------------------------TTCCC--TT--TCTTCTAGGAGTCCAAATTTCGCGAGACTGGCGTACTGACGCCCGAGGAGTTTGTGGC
droWil2 scf2_1100000004762:1576777-1577213 + TCAAAGGCACAGCATTAAATGTTGCAGAATATTTGACGCCTGTCTTAAAGGTAAGCGA--GAGG--GAGA-----GAGAGAGC---G---A--GAGATGATTTGTTGTTTTGCTATTATAATTCTTGTTGTTGTCA------------------------------------------------------TTGGCTGTG---A-G---AGATGAGCAACCCGAAGTAATCAAGTGAACAGTCACTGTGATTGT---------GAAGTCGTCTATG-ATGTATGCGAAGCTTATAAGCTTATATG--CTCAATCCAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTG-----------ACTA--TTC-ACAGTAATTTATTGCTGC-T-------CATATCT--GTCTT-GGTTAATGTTACCCCCTTGTAGGTGGGGGGTGTCAAGTGGCGCCCGTCTGACGCGAGACAGTTTCCACTTAAACTAATCAATTTTCTCTTGCTGTTTCAAT-------T------------------------------------------------------------------------TTCTTTGTT--TGAAATAGGAATCAAAATTCCGTGAAACTGGCGTCTTGACACCCGAGGAATTTGTAGC
droVir3 scaffold_13049:18186707-18187081 - dvi_20433 TAAAAGGCACAGCGCTCAATGTAGCAGAATATTTAACTCCAGTCTTGAAGGCAAGTAT--TGACTTTTGGTACTC--ATTAAAGACG---CGA---------------------------------GTTGATAGAGTGGGA---GGAGGATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTAATTAAAGGAAGACTTTTTCTTCGACTTTAACTTTATTGCTTAATTATTATTTATTTGTGACCGCATTCACTTGCAATATTGATGTATTAATTCAA-------------------------T-ATT----------------------CTATTGTGCGTTCTGT--CTT-A---TCA---ATTCATTTGTTTTCT------------------------------CTATCTGTCGCTCGGGC--------GGGGTTTGAGTGGCGACGCAT---TTGTAATCAATTTATAAC------T--------------------------------------------------------------------------------------------AATTCAT--TT--TTGATTAGGAGTCGAAATTTCGCGAAACTGGCGTATTAACACCAGAGGAATTTGTGGC
droMoj3 scaffold_6680:23762350-23762402 - TAAAGGGAACAGCGCTAAATGTGGCAGAATATTTAACGCCAATTTTAAAGGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15110:24241421-24241739 - TAAAAGGCAAAGCGCTTAATGTGGCAGAATATTTGACACCAATTCTAAAGGCAAGTAT--TAACTTATGT-------TTGAT--------------------------------------------------TAGTTGAGTCCCAGGATTTATGTAGCTTTAATAAATAATTTACTTTGTGC--------------------AAACTC-------------------------------------------------------------------------------------------A--------CAATA-----CAATAAATACA--------------------------------------------------------------------------------------------------------------CAAAATATTAT-------------------------T-TTACT-----------TAAGTGAATT-----------TTTA--CTT-A---TTA---ATACATTTAGTGAGG------------------------------GGCGCTGACGCGTGCGC--------AGTGTTCAACTGTCCA----T---TATTGAGAAATTAATCTT------A--------------------------------------------------------------------------------------------AAATTAT--TA--TTAATTAGGAATCGAAATTTCGCGAAACTGGAGTCTTAACACCAGAGGACTTTGTGGC
droAna3 scaffold_13337:18686081-18686497 - TGAAAGGAACGGCCCTAAACGTAGCCGAATATCTTACGCCCGTTTTAAAGGTAAAGAA--GAAA--GTGC-------AGCAACGACG---CAAGAAAAACT---ATG---------------------------------------------------------------------------------------------------------------------------------------------ATTATCATTTAGATCAAGTTTTTTATACGTATACACAACAGTTGTAGGCATATATATATTTAAAACAATGGA-TTGTTGAGGGTGTGTGCAAGTGCAACCCTAGTTCTGTAAAGACAGG-------------------------------------------------------------------------------------------------------------------------------CTGGGTTTT-----------ATGA--TACAA---TTATTGATTCCCCC-C-----T-AAACCCGAAAC--TTTCTCATACCCCTTGGTGGCAAT-------------------------------------------------------------------------------AAAACTGGATTCATCAGCTTTTCGCCGCCAGACTGTCGCCCCCATAAAATTAAATGAGT-GCAACATATACTTTCTTT-----TT---CATATTCAAAGGAATCCAAATTCCGGGAGACAGGTGTTCTCACCCCGGAGGAGTTTGTGGC
droBip1 scf7180000396741:1878135-1878559 - TGAAAGGAACGGCGCTGAACGTAGCCGAATATCTTACGCCTGTTTTGAAGGTAAAGAA--GAAA--GTGC-------AACAAAGATG---AAAGAAAAACT---ATG---------------------------------------------------------------------------------------------------------------------------------------------ATTATCACCTAGATCAAGTTTTTTATACGTATACACAGCGGTTGTGTACATATATGTAGTAAAAACAATGAT-TAATTGAGGGTGTGTGCAAGTGCAACCCCAGTTCTAGAAAGACGGG-------------------------------------------------------------------------------------------------------------------CCCAAAGAGAGCCTGAGTTTC-----------ATGA--TACAA---TTATTGATTCCCCC-T-------TAACCCGAAAC--TTTCTCATACCCCTTGGTGGCAAT-------------------------------------------------------------------------------AAAACTGGATTCATCAGCTTTTCGCCGCCAGACTGTCGCCCCCATAAAATTAAATGAGT-GCACCATACACTTTCT-------TT--TC--ATTTTTAGGAATCCAAATTCCGGGAGACAGGTGTTCTCACCCCGGAGGAGTTTGTGGC
droKik1 scf7180000302248:228838-229224 - TAAAAGGCACGGCGCTCAATGTGGCCGAATATCTAACGCCCGTACTGAAGGTAACTGATTGCAA--GTGC-------AACAACAATCTAAAAAGAAAAATT---TTGTTAC--------------TATTGCTGTGA------------------------------------------------------TTAAACACA---A-----------------------------------------------------------------------------AAACAGAG------------------------------G--------TG--------------------------------------------------------------------------------------------------------------CAAAA-GTGTATTTATACAAGCCAGCTTCAGCACAAAGGAAAGCCAGCAAAGATAAGGGCTCTCTGCTGTGTG------------T---ATATTGATTCGCTCATT------TTCCCCGCAACGATTTCCCATT-CCCTTGATGGCCAT-------------------------------------------------------------------------------AAAACCGGAT----------TTCGTCGCCAGACTGTCGCCGATTTAGTTTTCATAGAGTCGCCACTTAAATTTCCCCT-----TT--CT--TTTTTCAGGAATCCAAATTCCGTGAGACAGGCGTCCTGACACCCGAGGAGTTTGTGGC
droFic1 scf7180000453824:105624-105695 + TTAATTTCTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT--AT--TCTTGCAGGAATCAAAATTCCGCGAGACGGGTGTTCTTACTCCGGAGGAGTTCGTGGC
droEle1 scf7180000490993:1660864-1660927 + TT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CC--TT--TCTTGCAGGAATCGAAATTCCGTGAGACGGGCGTTCTCACTCCGGAGGAGTTTGTAGC
droRho1 scf7180000779212:101701-101937 - TGAAAGGCACGGCGCTCAATGTGGCCGAATATCTAACGCCCGTTTTAAAGGTAAAAAG---------TGC-------CAAATTGACG----------------------------------------------------------------------------------AAAACCTGACTATTAAAGCGATCAAATATGTACAA-------------------------------------------------------------------A---------------------------A--------TACGC-----AT-TAAATAGGGGTGTATATAAG-------------------------------------------------------------------------------------------------------------------CAGACAGGCTTCATGACAAA-GAAAACCGGAAAAGATAATGGTTTTC-------------CACTCTCAA---TTATTGATTTCCCC-T-----TTTTCCGCG--ACCTCTATCCATTCCCCCAAATG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302529:757834-757929 - ACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTAAAACACCCGCTTTAATAATACTGTA------------------------------------------------------------------------TTCA--TC--CCTTGCAGGAATCGAAATTCCGCGAGACGGGCGTTCTCACTCCGGAGGAGTTCGTGGC
droTak1 scf7180000415184:311249-311348 - TAATC---ACACCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA---TCAAAATCAGTATAAATC----------------------AT---------------------------------------------------------------------------AAATCCC--TT--TCTTTTAGGAATCGAAGTTCCGCGAGACGGGCGTTCTTACGCCGGAGGAGTTTGTGGC
droEug1 scf7180000409471:747760-747823 - TC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CC--TT--ACTTGCAGGAATCAAAATTCCGTGAAACTGGTGTTCTTACTCCCGAGGAATTTGTGGC
dm3 chr3L:18742427-18742493 + TTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTT--TT--TTTTGCAGGAATCGAAATTCCGTGAGACAGGTGTTCTCACTCCGGAAGAATTCGTGGC
droSim2 3l:18369979-18370043 + TTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT--TT--TTTTGCAGGAATCGAAGTTCCGTGAGACAGGTGTTCTCACTCCGGAGGAATTCGTGGC
droSec2 scaffold_19:715599-715663 + TTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC--TT--TTTTGCAGGAATCGAAGTTCCGTGAGACAGGGGTTCTCACTCCGGAGGAATTCGTGGC
droYak3 3L:15322018-15322076 - T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTACAGGAGTCGAAGTTCCGTGAGACAGGTGTTCTCACTCCGGAGGAATTCGTGGC
droEre2 scaffold_4784:15182528-15182747 - TAAAGGGCACAGCTCTCAACGTGGCCGAATATCTGACGCCCGTTTTGAAGGTAAAG----------------------------------------------------------------------------------------------------TCTCAAATAAACGGAAAACGGACTATCAAAGCGATGAAATGTGTA----TT--------------------------------------------------------------TTA---------------------------A--------TACGT-----AT-GAAACGAGAGTGCATGCTGA--------------------------------------------------------------------------------------------------------------------------------------A-GAAAATCCGAAAAGATAATGGGCCTC-----------CTCG--CTC-A---TTTCCCATTTTCCC-A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTCTCTGAATTCTGGTGACGGCACCCGGAGTGC------T

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
TGAAGGGCACAGCCCTAAATGTGGCCGAATATTTAACGCCAGTGCTAAAGGTATTG------------------------------------------------TTGTTTCTCTAT--------TTGTTGTTGCGCTGGAA---CGGAGATTGGAATCTCTGATAGATCAAAAATCGGCTGC--------------------AAATCT-------------------------------------------------------------------------------------------A--------TACAC-----ATATAGATATGTCTGCGTGCTGG--------------------------------------------------------------------------------------------------------------------------------------A-CAACA-----------AAGGGGTCTT-----------TCCA--TTC-A---TTATTGATTGCCCC-T-------TTCCACG--ACTTC-GGCCAGCCCCCCAGGCGCTCATGCCTGGGCCGCCGACTGGCGTCCAACTGGCGACGCATACATTTCAATCAATTAAACACGCCCTCAGCACCCCTATTAAT-------T------------------------------------------------------------------------TTCCC--TT--TCTTCTAGGAGTCCAAATTTCGCGAGACTGGCGTACTGACGCCCGAGGAGTTTGTGGCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCGTACTGACGCCCGAGGA.........2111.0010100000000
.............................................................................................................................TGTTGTTGCGCTGGAA---CGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCGAGACTGGCGTACTGACGC................2311.0010000000100
........................................................................................................................................TGGAA---CGGAGATTGGAATC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.........................CGAATATTTAACGCCAGTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATTTCGCGAGACTGGC..........................1911.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTGGGCCGCCGACTGT..................................................................................................................................................................................................................1911.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-CAACA-----------AAGGGGTCTT-----------TCCA--T.......................................................................................................................................................................................................................................................................................................2111.0010100000000
.................................TAACGCCAGTGCTAAAGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAATTTCGCGAGACTGGC..........................2111.0010100000000
.................................................................................................................TAT--------TTGTTGTTGCGCTGGAA---C...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCGAGACTGGCGTACTGACGCCCGA............2711.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAAATTTCGCGAGACT.............................1911.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCCCC-T-------TTCCACG--ACTTC-G.........................................................................................................................................................................................................................................................2111.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCCGACTGGCGTCCAACTG........................................................................................................................................................................................................2111.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTGACGCCCGAGGAGTTTGTGGC2511.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTACTGACGCCCGAGGAGT.......2111.0010100000000
................................................................................................................................................................................................................................................................................................................................ATAGATATGTCTGCGTGCTGG--------------------------------------------------------------------------------------------------------------------------------------.....................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAAATTTCGCGAGACTGG...........................2111.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCC-T-------TTCCACG--ACTTC-GG........................................................................................................................................................................................................................................................2011.0010100000000
..................................................................................................................................................................................................................................................................................................................................AGATATGTCTGCGTGCTGG--------------------------------------------------------------------------------------------------------------------------------------A-...................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGACTGGCGTACTGACGCCCGAGGAG........2911.0011000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGAGACTGGCGTACTGAC..................2011.0010100000000
................................TTAACGCCAGTGCTAAAGGTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
................................................................................................................................TGTTGCGCTGGAA---CGGAGATT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..........................GAATATTTAACGCCAGTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
........................CCGAATATTTAACGCCAGTGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...............................................................................................................TCTAT--------TTGTTGTTGCGCTGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGCGTACTGACGCCCGAG...........2111.0010100000000
droPer2
TGAAGGGCACAGCCCTAAATGTGGCCGAATATTTAACGCCAGTGCTAAAGGTATTG------------------------------------------------TTGTTTCTCTAT--------TTGTTGTTGCGCTGGAA---CGGAGATTGAAATCTCTGATAGATCAAAAATCGGTTGC--------------------AAATCT-------------------------------------------------------------------------------------------A--------TACAC-----ATATAGATATGTCTGCGTGCTGG--------------------------------------------------------------------------------------------------------------------------------------A-CAACA-----------AAGGGGTCTT-----------TCCA--TTC-A---TTATTGATTGCCCC-T-------TTCCACG--ACTTC-GGCCAGCCCCCCAGGCGCTCATGCCTGGGCCGCCGACTGGCGTCCAACTGGCGACGCATACATTTCAATCAATTAAACACGCCCTCAGCACCCCTATTAAT-------T------------------------------------------------------------------------TTCCC--TT--TCTTCTAGGAGTCCAAATTTCGCGAGACTGGCGTACTGACGCCCGAGGAGTTTGTGGCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................................................................................................................................................ATCTCTGATAGATCAAAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002020000
...............................................................................................................................................................................................................................................................................................................................TATAGATATGTCTGCGTGCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
..............................................................................................................................GTTGTTGCGCTGGAA---CGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
droWil2
TCAAAGGCACAGCATTAAATGTTGCAGAATATTTGACGCCTGTCTTAAAGGTAAGCGA--GAGG--GAGA-----GAGAGAGC---G---A--GAGATGATTTGTTGTTTTGCTATTATAATTCTTGTTGTTGTCA------------------------------------------------------TTGGCTGTG---A-G---AGATGAGCAACCCGAAGTAATCAAGTGAACAGTCACTGTGATTGT---------GAAGTCGTCTATG-ATGTATGCGAAGCTTATAAGCTTATATG--CTCAATCCAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTG-----------ACTA--TTC-ACAGTAATTTATTGCTGC-T-------CATATCT--GTCTT-GGTTAATGTTACCCCCTTGTAGGTGGGGGGTGTCAAGTGGCGCCCGTCTGACGCGAGACAGTTTCCACTTAAACTAATCAATTTTCTCTTGCTGTTTCAAT-------T------------------------------------------------------------------------TTCTTTGTT--TGAAATAGGAATCAAAATTCCGTGAAACTGGCGTCTTGACACCCGAGGAATTTGTAGCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...................TGTTGCAGAATATTTGACGCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00220000
....................GTTGCAGAATATTTGACGCCTGTCTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGTCTTGACACCCGAGGAAT.......2211.00100100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGTCTTGACACCCGAGGA.........2011.00100100
................................TTGACGCCTGTCTTAAAGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
..............................ATTTGACGCCTGTCTTAAAGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCGCCCGTCTGACGCGAGA................................................................................................................................................................................................2111.00101000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAACTGGCGTCTTGACACCCGA............2511.00100100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGACACCCGAGGAATTTGTA..2211.00100100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCCGTGAAACTGGCGT........................1911.00100100
.......................GCAGAATATTTGACGCCTGTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTGC-T-------CATATCT--GTCTT-..........................................................................................................................................................................................................................................................2111.00101000
..........................................................................................................................TCTTGTTGTTGTCA------------------------------------------------------TTGGCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCCGAGGAATTTGTAGC1911.00100100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------CATATCT--GTCTT-GGTTAATGTTACCCCC..........................................................................................................................................................................................................................................2911.00101000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATCAAAATTCCGTGAAACTGGCGT........................2711.00101000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAAAATTCCGTGAAACTGGCGT........................2511.00100100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGTGAAACTGGCGTCT......................1911.00110000
............................ATATTTGACGCCTGTCTTAAAGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100
....................GTTGCAGAATATTTGACGCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
droVir3
TAAAAGGCACAGCGCTCAATGTAGCAGAATATTTAACTCCAGTCTTGAAGGCAAGTAT--TGACTTTTGGTACTC--ATTAAAGACG---CGA---------------------------------GTTGATAGAGTGGGA---GGAGGATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTAATTAAAGGAAGACTTTTTCTTCGACTTTAACTTTATTGCTTAATTATTATTTATTTGTGACCGCATTCACTTGCAATATTGATGTATTAATTCAA-------------------------T-ATT----------------------CTATTGTGCGTTCTGT--CTT-A---TCA---ATTCATTTGTTTTCT------------------------------CTATCTGTCGCTCGGGC--------GGGGTTTGAGTGGCGACGCAT---TTGTAATCAATTTATAAC------T--------------------------------------------------------------------------------------------AATTCAT--TT--TTGATTAGGAGTCGAAATTTCGCGAAACTGGCGTATTAACACCAGAGGAATTTGTGGCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAAATTTCGCGAAACTG............................2011.001000000000000000000010000000000000000000000000000000000000000000
....................................................................................................................................AGAGTGGGA---GGAGGATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000100000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCT------------------------------CTATCTGTCGCTCGGG.............................................................................................................................................................................................................................2111.001010000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAA-------------------------T-ATT----------------------CTATTGTGCGTT..............................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000001000000000000000000000000
..AAAGGCACAGCGCTCAATGTAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000100000000000000000000000000000000000000000000000
..................................................................TTGGTACTC--ATTAAAGACG---CG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000100000000000000000000000000000
........ACAGCGCTCAATGTAGCAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000100000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCGAAATTTCGCGAAACT.............................2111.001000000000000001000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAAATTTCGCGAAACTGG...........................2111.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................CACTTGCAATATTGATGTAT......................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCTGTCGCTCGGGC--------GGGGTT..............................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCGCTCGGGC--------GGGGTTTGAG..........................................................................................................................................................................................................2211.001000000000000000000000000100000000000000000000000000000000000000
..................................................GCAAGTAT--TGACTTTTGGTAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--TTGATTAGGAGTCGAAATTTC.....................................2211.001000000000000000000000000010000000000000000000000000000000000000
..............................................................................................................................GTTGATAGAGTGGGA---GGAGGAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAAATTTCGCGAAACTGGC..........................2211.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCTGTCGCTCGGGC--------GGG.................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGGGC--------GGGGTTTGAGTGGC......................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
..AAAGGCACAGCGCTCAATGTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000100000000000000000000000000000000
.................AATGTAGCAGAATATTTAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000010000000000000000000000000000
droMoj3
TAAAGGGAACAGCGCTAAATGTGGCAGAATATTTAACGCCAATTTTAAAGGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
TAAAAGGCAAAGCGCTTAATGTGGCAGAATATTTGACACCAATTCTAAAGGCAAGTAT--TAACTTATGT-------TTGAT--------------------------------------------------TAGTTGAGTCCCAGGATTTATGTAGCTTTAATAAATAATTTACTTTGTGC--------------------AAACTC-------------------------------------------------------------------------------------------A--------CAATA-----CAATAAATACA--------------------------------------------------------------------------------------------------------------CAAAATATTAT-------------------------T-TTACT-----------TAAGTGAATT-----------TTTA--CTT-A---TTA---ATACATTTAGTGAGG------------------------------GGCGCTGACGCGTGCGC--------AGTGTTCAACTGTCCA----T---TATTGAGAAATTAATCTT------A--------------------------------------------------------------------------------------------AAATTAT--TA--TTAATTAGGAATCGAAATTTCGCGAAACTGGAGTCTTAACACCAGAGGACTTTGTGGCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTTCGCGAAACTGGAGTCTTA....................2411.00110
........AAAGCGCTTAATGTGGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110
droAna3
TGAAAGGAACGGCCCTAAACGTAGCCGAATATCTTACGCCCGTTTTAAAGGTAAAGAA--GAAA--GTGC-------AGCAACGACG---CAAGAAAAACT---ATG---------------------------------------------------------------------------------------------------------------------------------------------ATTATCATTTAGATCAAGTTTTTTATACGTATACACAACAGTTGTAGGCATATATATATTTAAAACAATGGA-TTGTTGAGGGTGTGTGCAAGTGCAACCCTAGTTCTGTAAAGACAGG-------------------------------------------------------------------------------------------------------------------------------CTGGGTTTT-----------ATGA--TACAA---TTATTGATTCCCCC-C-----T-AAACCCGAAAC--TTTCTCATACCCCTTGGTGGCAAT-------------------------------------------------------------------------------AAAACTGGATTCATCAGCTTTTCGCCGCCAGACTGTCGCCCCCATAAAATTAAATGAGT-GCAACATATACTTTCTTT-----TT---CATATTCAAAGGAATCCAAATTCCGGGAGACAGGTGTTCTCACCCCGGAGGAGTTTGTGGCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAGGTGTTCTCACCCCGGAG...........2312.002000002
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTCCGGGAGACAGGTGTT.......................2111.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCCGGGAGACAGGTGTTCTCACCC................2711.001010000
droBip1
TGAAAGGAACGGCGCTGAACGTAGCCGAATATCTTACGCCTGTTTTGAAGGTAAAGAA--GAAA--GTGC-------AACAAAGATG---AAAGAAAAACT---ATG---------------------------------------------------------------------------------------------------------------------------------------------ATTATCACCTAGATCAAGTTTTTTATACGTATACACAGCGGTTGTGTACATATATGTAGTAAAAACAATGAT-TAATTGAGGGTGTGTGCAAGTGCAACCCCAGTTCTAGAAAGACGGG-------------------------------------------------------------------------------------------------------------------CCCAAAGAGAGCCTGAGTTTC-----------ATGA--TACAA---TTATTGATTCCCCC-T-------TAACCCGAAAC--TTTCTCATACCCCTTGGTGGCAAT-------------------------------------------------------------------------------AAAACTGGATTCATCAGCTTTTCGCCGCCAGACTGTCGCCCCCATAAAATTAAATGAGT-GCACCATACACTTTCT-------TT--TC--ATTTTTAGGAATCCAAATTCCGGGAGACAGGTGTTCTCACCCCGGAGGAGTTTGTGGCSizeHit CountTotal NormTotal
No Reads
droKik1
TAAAAGGCACGGCGCTCAATGTGGCCGAATATCTAACGCCCGTACTGAAGGTAACTGATTGCAA--GTGC-------AACAACAATCTAAAAAGAAAAATT---TTGTTAC--------------TATTGCTGTGA------------------------------------------------------TTAAACACA---A-----------------------------------------------------------------------------AAACAGAG------------------------------G--------TG--------------------------------------------------------------------------------------------------------------CAAAA-GTGTATTTATACAAGCCAGCTTCAGCACAAAGGAAAGCCAGCAAAGATAAGGGCTCTCTGCTGTGTG------------T---ATATTGATTCGCTCATT------TTCCCCGCAACGATTTCCCATT-CCCTTGATGGCCAT-------------------------------------------------------------------------------AAAACCGGAT----------TTCGTCGCCAGACTGTCGCCGATTTAGTTTTCATAGAGTCGCCACTTAAATTTCCCCT-----TT--CT--TTTTTCAGGAATCCAAATTCCGTGAGACAGGCGTCCTGACACCCGAGGAGTTTGTGGCSizeHit CountTotal NormTotal
No Reads
droFic1
TTAATTTCTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT--AT--TCTTGCAGGAATCAAAATTCCGCGAGACGGGTGTTCTTACTCCGGAGGAGTTCGTGGCSizeHit CountTotal NormTotal
No Reads
droEle1
TT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CC--TT--TCTTGCAGGAATCGAAATTCCGTGAGACGGGCGTTCTCACTCCGGAGGAGTTTGTAGCSizeHit CountTotal NormTotal
No Reads
droRho1
TGAAAGGCACGGCGCTCAATGTGGCCGAATATCTAACGCCCGTTTTAAAGGTAAAAAG---------TGC-------CAAATTGACG----------------------------------------------------------------------------------AAAACCTGACTATTAAAGCGATCAAATATGTACAA-------------------------------------------------------------------A---------------------------A--------TACGC-----AT-TAAATAGGGGTGTATATAAG-------------------------------------------------------------------------------------------------------------------CAGACAGGCTTCATGACAAA-GAAAACCGGAAAAGATAATGGTTTTC-------------CACTCTCAA---TTATTGATTTCCCC-T-----TTTTCCGCG--ACCTCTATCCATTCCCCCAAATG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
ACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTAAAACACCCGCTTTAATAATACTGTA------------------------------------------------------------------------TTCA--TC--CCTTGCAGGAATCGAAATTCCGCGAGACGGGCGTTCTCACTCCGGAGGAGTTCGTGGCSizeHit CountTotal NormTotal
No Reads
droTak1
TAATC---ACACCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA---TCAAAATCAGTATAAATC----------------------AT---------------------------------------------------------------------------AAATCCC--TT--TCTTTTAGGAATCGAAGTTCCGCGAGACGGGCGTTCTTACGCCGGAGGAGTTTGTGGCSizeHit CountTotal NormTotal
No Reads
droEug1
TC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CC--TT--ACTTGCAGGAATCAAAATTCCGTGAAACTGGTGTTCTTACTCCCGAGGAATTTGTGGCSizeHit CountTotal NormTotal
No Reads
dm3
TTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTT--TT--TTTTGCAGGAATCGAAATTCCGTGAGACAGGTGTTCTCACTCCGGAAGAATTCGTGGCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGGTGTTCTCACTCCGGAAGAAT.......2616.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTCACTCCGGAAGAATTCGTG..2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGACAGGTGTTCTCACTCC...............2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCGTGAGACAGGTGTTCT.....................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGGTGTTCTCACTCCGGAAGAATT......2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCACTCCGGAAGAATTCGTGGC2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCTCACTCCGGAAGAATTCGTGGC2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAATTCCGTGAGACAGGTG.........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCGAAATTCCGTGAGACAGGT..........................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGTGTTCTCACTCCGGAAG..........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAGGTGTTCTCACTCCGGAAGA.........2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT--TT--TTTTGCAGGAATCG............................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCTCACTCCGGAAGAATT......2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCACTCCGGAAGAATTCGTG..2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATTCCGTGAGACAGGTGTTC......................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTCCGTGAGACAGGTGTT.......................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCTCACTCCGGAAGAATTCGTG..2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGAAATTCCGTGAGACAGGTGTTC......................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGACAGGTGTTCTCACTCCGGAAG..........2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATTCCGTGAGACAGGTGT........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGAAATTCCGTGAGACAGGT..........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGGTGTTCTCACTCCGGAA...........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCCGGAAGAATTCGTGGC2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCACTCCGGAAGAATTCGTGGC2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGAGACAGGTGTTCTCAC..................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT--TT--TTTTGCAGGAATCGA...........................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT--TT--TTTTGCAGGAATCGAAAC........................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAAATTCCGTGAGACAGGTGTTC......................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACTCCGGAAGAATTCGTT..2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTCCGGAAGAATTCGTG..1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
droSim2
TTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT--TT--TTTTGCAGGAATCGAAGTTCCGTGAGACAGGTGTTCTCACTCCGGAGGAATTCGTGGCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATCGAAGTTCCGTGAGACAGG...........................2511.00100000001000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCTCACTCCGGAGGAATTCGTGGC2711.00100000010000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGGTGTTCTCACTCCGGAG...........2211.00100010000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAAGTTCCGTGAGACA.............................1811.00100000000001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAGTTCCGTGAGACAG............................1811.00110000000000000000
droSec2
TTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC--TT--TTTTGCAGGAATCGAAGTTCCGTGAGACAGGGGTTCTCACTCCGGAGGAATTCGTGGCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGGAATCGAAGTTCCGT...................................2111.0011000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGAAGTTCCGTGAGACAG............................2111.0010100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGAAGTTCCGTGAGACAGGGGTTCT.....................2711.0010010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGAAGTTCCGTGAGACAGGGGTTCTCA...................2911.0010010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGAAGTTCCGTGAGACAGGG..........................2211.0010010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTCCGTGAGACAGGGGTTCTCACT.................2811.0010010
droYak3
T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTACAGGAGTCGAAGTTCCGTGAGACAGGTGTTCTCACTCCGGAGGAATTCGTGGCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAGTTCCGTGAGACAGG...........................1911.00101000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGTCGAAGTTCCGTGAGACAGGTGT........................2811.00100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTGAGACAGGTGTTCTC....................1911.00101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGTGTTCTCACTCCGGAGGA.........2211.00100000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTCCGTGAGACAGGT..........................1911.00100000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGGTGTTCTCACTCCGGAGGA.........2411.00100000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAGTTCCGTGAGACAGGT..........................2011.00100000010000
droEre2
TAAAGGGCACAGCTCTCAACGTGGCCGAATATCTGACGCCCGTTTTGAAGGTAAAG----------------------------------------------------------------------------------------------------TCTCAAATAAACGGAAAACGGACTATCAAAGCGATGAAATGTGTA----TT--------------------------------------------------------------TTA---------------------------A--------TACGT-----AT-GAAACGAGAGTGCATGCTGA--------------------------------------------------------------------------------------------------------------------------------------A-GAAAATCCGAAAAGATAATGGGCCTC-----------CTCG--CTC-A---TTTCCCATTTTCCC-A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTCTCTGAATTCTGGTGACGGCACCCGGAGTGC------TSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................................TGACGCCCGTTTTGAAGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010

Generated: 05/18/2015 at 05:59 AM