ID:

dps_302

 Coordinate:

2:1817836-1817986 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-5.0 -5.0 -5.0 -4.9

Flybase annnotation

exon [Dpse\GA26953:8]; CDS [Dpse\GA26953-cds]; intron [Dpse\GA26953-in]

No Repeatable elements found

mature
  1. dps_302  2:1817948-1817968 +
  2. Unknown_group_744:548-568 +
star
  1. dps_302  2:1817857-1817877 +
  2. Unknown_group_744:457-477 +

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GCCCCGCCCACTGTCAAGGAGGGGGAATTTCCCTGCAAGGTGTGCGGCAAGTAAGATTCCCCCCCAAAGAAATTTCTACCAAAAAACACTCGTATAACCAACCAACCAACAAAAAACAATCAAGTGAAAAACCATAGAACAAATTCAGAAATCCGCAAGCGATTTGAGTGCCCGTGTATTGACTTGAGTTGAGATCGTAAAGCACGCTATATCGTAAATTATGTACCATGCCAGCTCTCGAGTATTCGTAA
***********************************************************************....................((.......................((((((....................(((((..((((.......))))))))).....)).))))))******************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 V112
male body		 SRR902011
testis
 GSM343916
embryo
 M059
embryo
.......................................................................................................................................................................................TTGAGTTGAGATCGTAAAGCA............................................... 21 0 2 2.00 4 1 0 3 0 0
...........................................................................................................................................................................................GTTGAGATCGTAAAGCACGCT........................................... 21 0 2 1.50 3 2 1 0 0 0
...........................TTTCCCTGCAAGGTGTGCGGC........................................................................................................................................................................................................... 21 0 2 1.50 3 1 2 0 0 0
..................................................................................................................................................................TTTGAGTGCCCGTGTATTGAC.................................................................... 21 0 2 1.50 3 1 2 0 0 0
........................................................................................................................................................................TGCCCGTGTATTGACTTGAG............................................................... 20 0 2 1.50 3 2 1 0 0 0
.................................................................AAAGAAATTTCTACCAAAAAAA.................................................................................................................................................................... 22 1 2 1.00 2 0 0 2 0 0
.....................................................................................................................................................................GAGTGCCCGTGTATTGACTTG................................................................. 21 0 2 1.00 2 2 0 0 0 0
.............................TCCCTGCAAGGTGTGCGGCA.......................................................................................................................................................................................................... 20 0 2 1.00 2 2 0 0 0 0
...............................................................................................................................................TTCAGAAATCCGCAAGCGATT....................................................................................... 21 0 2 1.00 2 1 1 0 0 0
.......................GGAATTTCCCTGCAAGGTGTG............................................................................................................................................................................................................... 21 0 2 1.00 2 2 0 0 0 0
............................TTCCCTGCAAGGTGTGCGGCA.......................................................................................................................................................................................................... 21 0 2 1.00 2 2 0 0 0 0
............................TTCCCTGCAAGGTGTGCGGC........................................................................................................................................................................................................... 20 0 2 1.00 2 2 0 0 0 0
....................................................................................................................................................................TGAGTGCCCGTGTATTGACTT.................................................................. 21 0 2 1.00 2 0 2 0 0 0
...........................................................................................................................................................................................GTTGAGATCGTAAAGCGCGCT........................................... 21 1 2 0.50 1 0 1 0 0 0
..............................................................................................................................................ATTCAGAAATCCGCAAGCGAT........................................................................................ 21 0 2 0.50 1 0 1 0 0 0
...................................................................................................................................................................GTGAGTGCCCGTGTATTGACC................................................................... 21 2 2 0.50 1 0 0 0 0 1
...................................................................................................................................................................................TGACTTGAGTTGAGATCGTAA................................................... 21 0 2 0.50 1 0 0 1 0 0
.................................................................................................................................................................................ATTGACTTGAGTTGAGATCGT..................................................... 21 0 2 0.50 1 1 0 0 0 0
......................................................................................................................................................ATCCGCAAGCGATTTGAGTGC................................................................................ 21 0 2 0.50 1 1 0 0 0 0
..................................................................................................................................................................................TTGACTTGAGTTGAGATCGTA.................................................... 21 0 2 0.50 1 1 0 0 0 0
..........................ATTTCCCTGCAAGGTGTGCGG............................................................................................................................................................................................................ 21 0 2 0.50 1 0 1 0 0 0
.........................................................................................................................................................................................................................ATTATGTACCATGCCAGCTC.............. 20 0 2 0.50 1 0 0 1 0 0
.............................TCCCTGCAAGGTGTGCGGCAA......................................................................................................................................................................................................... 21 0 2 0.50 1 1 0 0 0 0
..............................................................................................................................................GTTCAGAAATCCGCAAGCGATT....................................................................................... 22 1 2 0.50 1 0 1 0 0 0
..............CAAGGAGGGGGAATTTCCCTG........................................................................................................................................................................................................................ 21 0 2 0.50 1 1 0 0 0 0
..........................ATTTCCCTGCAAGGTGTGCGT............................................................................................................................................................................................................ 21 1 2 0.50 1 1 0 0 0 0
.................................................................................................................................................................................................................................CCATGCCAGCTCTCGAGTATT..... 21 0 2 0.50 1 1 0 0 0 0
...........................................................................................................................................................................CCGTGTATTGACTTGAGTTGA........................................................... 21 0 2 0.50 1 1 0 0 0 0
.................................TGCAAGGTGTGCGGCAAGTAAGA................................................................................................................................................................................................... 23 0 2 0.50 1 0 0 0 1 0
..............................................................................................................................................................................TGTATTGACTTGAGTTGAGA......................................................... 20 0 2 0.50 1 0 0 1 0 0
.........................AATTTCCCTGCAAGGTGTGCG............................................................................................................................................................................................................. 21 0 2 0.50 1 1 0 0 0 0
............................................................................................................................................................................CGTGTATTGACTTGAGTTGAG.......................................................... 21 0 2 0.50 1 1 0 0 0 0
......................................................................................................................................................................................................................TAAATTATGTACCATGCCAGC................ 21 0 2 0.50 1 1 0 0 0 0
...CCGCCCACTGTCAAGGAGG..................................................................................................................................................................................................................................... 19 0 2 0.50 1 1 0 0 0 0
.............................................GGCAAGTAAGATTCCCCCCC.......................................................................................................................................................................................... 20 0 2 0.50 1 1 0 0 0 0
.......................................................................ATTTCTACCAAAAAACACTCG............................................................................................................................................................... 21 0 2 0.50 1 1 0 0 0 0
....................................................................................................................................................................................GACTTGAGTTGAGATCGTA.................................................... 19 0 2 0.50 1 1 0 0 0 0
.......................................................................................................................................................................................TTGAGTTGAGATCGTAAAGCC............................................... 21 1 2 0.50 1 0 0 1 0 0
...........................................GCGGCGAGTAAGATTCCCCCC........................................................................................................................................................................................... 21 1 2 0.50 1 1 0 0 0 0
.........GCTGTCAAGGAGGGGGAATTT............................................................................................................................................................................................................................. 21 1 2 0.50 1 1 0 0 0 0
..............................................................................................................................................................................................................................GTACCATGCCAGCTCTCGAGT........ 21 0 2 0.50 1 1 0 0 0 0
............................................................................................................................................................................................TTGAGATCGTAAAGCACGC............................................ 19 0 2 0.50 1 1 0 0 0 0
...........................................................................................................................................................CAAGCGATTTGAGTGCCCGTG........................................................................... 21 0 2 0.50 1 1 0 0 0 0
.........................................................................................................................................................CGCAAGCGATTTGAGTGCC............................................................................... 19 0 2 0.50 1 1 0 0 0 0
..........................................................................................................................................................................................................................TTGTGTACCATGCCAGCTCTC............ 21 1 2 0.50 1 0 0 0 1 0
.............................TCCCTGCAAGGTGTGCGGC........................................................................................................................................................................................................... 19 0 2 0.50 1 1 0 0 0 0
.......................GGAATTTCCCTGCAAGGTGT................................................................................................................................................................................................................ 20 0 2 0.50 1 1 0 0 0 0
.............................................................................................................................................AATTCAGAAATCCGCAAGCG.......................................................................................... 20 0 2 0.50 1 1 0 0 0 0
...................................................................................................................................................................................................CGTAAAGCACGCTATATCGT.................................... 20 0 2 0.50 1 1 0 0 0 0
.................................................................................................................................................................ATTTGAGTCCCCGTGTATTG...................................................................... 20 1 2 0.50 1 0 1 0 0 0
..............................................................................CCAAAAAACACTCGTATAACC........................................................................................................................................................ 21 0 2 0.50 1 1 0 0 0 0
.............................................................................ACCAAAAAACACTCGTATAA.......................................................................................................................................................... 20 0 2 0.50 1 1 0 0 0 0
............................................................................................................................................................................................................................ATGTACCATGCCAGCTCTCGA.......... 21 0 2 0.50 1 1 0 0 0 0
................................CTGCAAGGTGTGCGGCAAGT....................................................................................................................................................................................................... 20 0 2 0.50 1 0 1 0 0 0
............................................................................................................ACAAAGAACAATCAAGTGAAG.......................................................................................................................... 21 2 3 0.33 1 1 0 0 0 0
.........................................GTGCGGCAGGTGGGATTCCCC............................................................................................................................................................................................. 21 3 5 0.20 1 1 0 0 0 0
..........................................TGCGGCAGGTGGGATTCCCCC............................................................................................................................................................................................ 21 3 7 0.14 1 1 0 0 0 0
...................................................................................................................CCAACCAACTGAAAAACCAT.................................................................................................................... 20 3 20 0.10 2 2 0 0 0 0
...................................................................................................................................................................................TGACTTGTGTTGAAATCGTC.................................................... 20 3 10 0.10 1 0 1 0 0 0
....................................................GAGATTCCCCCCCAAGGAGA................................................................................................................................................................................... 20 3 12 0.08 1 1 0 0 0 0
..............................................................CCCTGAGAAATTCCTACCAAA........................................................................................................................................................................ 21 3 13 0.08 1 1 0 0 0 0
..............................................GCAGGTGGGATTCCCCCCCA......................................................................................................................................................................................... 20 3 14 0.07 1 1 0 0 0 0
..................................................................................................................................................AGAAATTCGCACGCGATGT...................................................................................... 19 3 20 0.05 1 1 0 0 0 0
...................................................................AGAAATTCCTACCAAATA...................................................................................................................................................................... 18 2 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

CGGGGCGGGTGACAGTTCCTCCCCCTTAAAGGGACGTTCCACACGCCGTTCATTCTAAGGGGGGGTTTCTTTAAAGATGGTTTTTTGTGAGCATATTGGTTGGTTGGTTGTTTTTTGTTAGTTCACTTTTTGGTATCTTGTTTAAGTCTTTAGGCGTTCGCTAAACTCACGGGCACATAACTGAACTCAACTCTAGCATTTCGTGCGATATAGCATTTAATACATGGTACGGTCGAGAGCTCATAAGCATT
********************************************************************....................((.......................((((((....................(((((..((((.......))))))))).....)).))))))*********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 V112
male body		 SRR902011
testis
 GSM343916
embryo
 M022
male body		 GSM444067
head
..............................................................GGGACTCTTTAAGGATGGTTT........................................................................................................................................................................ 21 3 13 22.62 294 207 87 0 0 0 0
...............................................................GGACTCTTTAAGGATGGTTT........................................................................................................................................................................ 20 3 19 6.47 123 108 15 0 0 0 0
.....................................................................................................................................................................................................................................CGGTCGAGAGCTCATAAGCAT. 21 0 2 3.00 6 2 0 4 0 0 0
.................................................................................................GGTTGGTTGGTTGTTTTTTG...................................................................................................................................... 20 0 2 2.00 4 0 2 2 0 0 0
......................................................................................................................................................................................................................................GGTCGAGAGCTCATAAGCAT. 20 0 2 2.00 4 1 0 3 0 0 0
.....................................................................................................GGTTGGTTGTTTTTTGTTAG.................................................................................................................................. 20 0 2 1.50 3 1 0 2 0 0 0
...............................................................GGTTTCTTTAAAGATGGTTTT....................................................................................................................................................................... 21 0 2 1.50 3 2 0 1 0 0 0
................................................................................................................................................AGTCTTTAGGCGTTCGCTAAA...................................................................................... 21 0 2 1.50 3 2 0 1 0 0 0
.....................................................................................................GGTTGGTTGTTTTTTGTTAGT................................................................................................................................. 21 0 2 1.50 3 3 0 0 0 0 0
......................................................................................................GTTGGTTGTTTTTTGTTAGT................................................................................................................................. 20 0 2 1.50 3 0 0 3 0 0 0
.................................................................................................CCTTGGTTGGTTGTTTTTTGTTA................................................................................................................................... 23 2 2 1.00 2 0 0 2 0 0 0
.....................................TCCACACGCCGTTCATTCTAA................................................................................................................................................................................................. 21 0 2 1.00 2 1 0 1 0 0 0
...............................................................................................................................................AAGTCTTTAGGCGTTCGCTA........................................................................................ 20 0 2 1.00 2 2 0 0 0 0 0
............................................................GGGGGTTTCTTTAAAGATG............................................................................................................................................................................ 19 0 2 1.00 2 1 0 1 0 0 0
..............................................................GGGTTTCTTTAAAGATGGTTT........................................................................................................................................................................ 21 0 2 1.00 2 0 0 2 0 0 0
...................................................................................................................................................................................................................................TACGGTCGAGAGCTCATAAGC... 21 0 2 1.00 2 2 0 0 0 0 0
...........................................................................................CATATTGGTTGGTTGGTTGT............................................................................................................................................ 20 0 2 0.50 1 0 0 1 0 0 0
.....................................................................................................................................................................................................................................TGGTCGAGAGCTCATAAGCATT 22 1 2 0.50 1 1 0 0 0 0 0
............................................................................................................TGTTTTTTGTTAGTTCACTTT.......................................................................................................................... 21 0 2 0.50 1 1 0 0 0 0 0
...........................................................................................................................................................................................CAACTCTAGCATTTCGTGCGA........................................... 21 0 2 0.50 1 1 0 0 0 0 0
.......................................................................................................................................................TGGCGTTCGCTAAACTCACGGG.............................................................................. 22 1 2 0.50 1 0 1 0 0 0 0
.............................................................GGGGTTTCTTTGAAGATGGT.......................................................................................................................................................................... 20 1 2 0.50 1 1 0 0 0 0 0
..GGGCGGGTGACAGTTCCT....................................................................................................................................................................................................................................... 18 0 2 0.50 1 0 1 0 0 0 0
............................................................GGGGGTTTCTTTAAAGAT............................................................................................................................................................................. 18 0 2 0.50 1 0 0 0 1 0 0
........................................................................................................................................................................ACGGGCACATAACTGAACTCAACT........................................................... 24 0 2 0.50 1 1 0 0 0 0 0
...............................GGACGTTCCACACGCCGTT......................................................................................................................................................................................................... 19 0 2 0.50 1 1 0 0 0 0 0
....................................................................................................................................................................................................CATTTCGTGCGATGTAGCGTT.................................. 21 2 2 0.50 1 1 0 0 0 0 0
...........................................................................................................................................................GTTCGCTAAACTCACGGGCAC........................................................................... 21 0 2 0.50 1 1 0 0 0 0 0
.GGGGCGGGTGACAGTTCC........................................................................................................................................................................................................................................ 18 0 2 0.50 1 0 0 1 0 0 0
............................GAGGGACGTTCCGCACGCCGT.......................................................................................................................................................................................................... 21 2 2 0.50 1 0 1 0 0 0 0
.................................................................................................CCTTGGTTGGTTGTTTTTTGTT.................................................................................................................................... 22 2 4 0.50 2 0 0 2 0 0 0
.....................................................TCTAAGGGGGGGTATCTTTAA................................................................................................................................................................................. 21 1 2 0.50 1 0 0 0 1 0 0
...........................................................................................................................................................................................CAACTCTAGCATTTCGTGCG............................................ 20 0 2 0.50 1 1 0 0 0 0 0
.......................................................................................................TTGGTTGTTTTTTGTTAGTT................................................................................................................................ 20 0 2 0.50 1 1 0 0 0 0 0
.ATGGCGGGTGACAGTTCCTC...................................................................................................................................................................................................................................... 20 2 2 0.50 1 0 1 0 0 0 0
......................................................................................................................................................................................................................................GGTCGAGAGCTCATAAGCATT 21 0 2 0.50 1 0 0 1 0 0 0
......................................................................................................................................................................................................................................GGTCGAGAGCTCGTAAGCAT. 20 1 2 0.50 1 1 0 0 0 0 0
.............................................................................TGGTTTTTTGTGAGCATGTTG......................................................................................................................................................... 21 1 2 0.50 1 1 0 0 0 0 0
...................................GTTCCACACGCCGTTCATTC.................................................................................................................................................................................................... 20 0 2 0.50 1 1 0 0 0 0 0
..................................................................................................................................................................................................................................GTACGGTCGAGAGCTCATAAG.... 21 0 2 0.50 1 1 0 0 0 0 0
.GGGGCGGGTGACAGTTCCTCC..................................................................................................................................................................................................................................... 21 0 2 0.50 1 1 0 0 0 0 0
....................................TTCCACACGCCGTTCATTCT................................................................................................................................................................................................... 20 0 2 0.50 1 1 0 0 0 0 0
..................................................................................................GTTGGTTGGTTGTTTTTTGTT.................................................................................................................................... 21 0 2 0.50 1 1 0 0 0 0 0
.....................................................................................................................................................................................TGAACTCAACTCTAGCATTTC................................................. 21 0 2 0.50 1 1 0 0 0 0 0
..GGGCGGGTGACAGTTCCTC...................................................................................................................................................................................................................................... 19 0 2 0.50 1 1 0 0 0 0 0
.........TGACAGTTCCTCCCCCTTGGA............................................................................................................................................................................................................................. 21 2 2 0.50 1 0 1 0 0 0 0
.....................................................................................TGTGAGCATATTGGTTGGTTG................................................................................................................................................. 21 0 2 0.50 1 0 1 0 0 0 0
..........GACAGTTCCTCCCCCTTAAAG............................................................................................................................................................................................................................ 21 0 2 0.50 1 1 0 0 0 0 0
......................................................................................................GTTGGTTGTTTTTTGTTAGTT................................................................................................................................ 21 0 2 0.50 1 1 0 0 0 0 0
....................................................................................................................................................................................................................................ACGGTCGAGAGCTCATAAGCA.. 21 0 2 0.50 1 1 0 0 0 0 0
...........................AAAGGGACGTTCCACACGCCGT.......................................................................................................................................................................................................... 22 0 2 0.50 1 0 1 0 0 0 0
.........................................................................................................................................................................CGGGCACATAACTGAACTCAA............................................................. 21 0 2 0.50 1 1 0 0 0 0 0
......................................................................................................................................................................................................TTTCGTGCGATATAGCATTTA................................ 21 0 2 0.50 1 1 0 0 0 0 0
............................AAGGGACGTTCCACACGCCGT.......................................................................................................................................................................................................... 21 0 2 0.50 1 1 0 0 0 0 0
.TGGGCGGGTGACAGTTCCT....................................................................................................................................................................................................................................... 19 1 2 0.50 1 1 0 0 0 0 0
....................................................................................................TGGTTGGTTGTTTTTTGTTA................................................................................................................................... 20 0 2 0.50 1 1 0 0 0 0 0
..........................................................................................................................................................................GGGCACATAACTGAACTCA.............................................................. 19 0 2 0.50 1 0 0 0 0 0 1
....................................................................................................................................................................................................................................ACGGTCGAGAGCTCATAAGC... 20 0 2 0.50 1 1 0 0 0 0 0
.................................................................................................................................................................................TAACTGAACTCAACTCTAGCA..................................................... 21 0 2 0.50 1 1 0 0 0 0 0
....................................................................................................................................................................................................CATTTCGTGCGATATAGCATT.................................. 21 0 2 0.50 1 1 0 0 0 0 0
................................................................................................................................................................................................................................TGGTACGGTCGAGAGCTCATA...... 21 0 2 0.50 1 0 1 0 0 0 0
..........................................................................................................................................................................................................GTGCGATATAGCATTTAATAC............................ 21 0 2 0.50 1 1 0 0 0 0 0
....................................................................................................................GTTAGTTCACTTTTTGGTATC.................................................................................................................. 21 0 2 0.50 1 1 0 0 0 0 0
............................................................GGGGGTTTCTTTAAAGATGGT.......................................................................................................................................................................... 21 0 2 0.50 1 1 0 0 0 0 0
...................................................................................................TTGGTTGGTTGTTTTTTGTT.................................................................................................................................... 20 0 2 0.50 1 0 0 1 0 0 0
.....................................................................................................................................................................CTCACGGGCACATAACTGAAC................................................................. 21 0 2 0.50 1 1 0 0 0 0 0
..................................................................................................................................................................................................AGCATTTCGTGCGATATAGCA.................................... 21 0 2 0.50 1 1 0 0 0 0 0
.....................................................................................................AGTTGGTTGTTTTTTGTTAGTT................................................................................................................................ 22 1 2 0.50 1 1 0 0 0 0 0
.........................................................................................................................................................................................................CGTGCGATATAGCATTTAGTA............................. 21 1 2 0.50 1 1 0 0 0 0 0
..........................................................TGGGGGGTTTCTTTGAAGAT............................................................................................................................................................................. 20 2 2 0.50 1 0 1 0 0 0 0
.................................................................................................GGTTGGTTGGTTGTTTTTTGT..................................................................................................................................... 21 0 2 0.50 1 1 0 0 0 0 0
.....................................................................................................................................................................................................................................CGGTCGAGAGCTCATAAACAT. 21 1 2 0.50 1 0 1 0 0 0 0
..........................................................................................................................................................................................................GTGCGATATAGCATTTAATA............................. 20 0 2 0.50 1 1 0 0 0 0 0
......................................................................................GTGAGCATATTGGTTGGTTGG................................................................................................................................................ 21 0 2 0.50 1 0 1 0 0 0 0
...............................................................................................................................................................................................................................ATGGTACGGTCGAGAGCTC......... 19 0 2 0.50 1 1 0 0 0 0 0
.................................................................................TTTTTGTGAGCATATTGGTTG..................................................................................................................................................... 21 0 2 0.50 1 0 1 0 0 0 0
.........TGACAGTTCCTCCCCCTTAAA............................................................................................................................................................................................................................. 21 0 2 0.50 1 1 0 0 0 0 0
............................................................TGGGGTTTCTTTAAAGATGGT.......................................................................................................................................................................... 21 1 2 0.50 1 0 0 1 0 0 0
...............................................................GGTTTCTTTAAAGATGGTTT........................................................................................................................................................................ 20 0 2 0.50 1 0 0 1 0 0 0
................................................................................................................................................................................................................................TGGTACGGTCGAGAGCTCAT....... 20 0 2 0.50 1 1 0 0 0 0 0
...................................................................................................................................................CTTTAGGCGTTCGCTAAACTCAC................................................................................. 23 0 2 0.50 1 0 0 0 0 1 0
...GGCGGGTGACAGTTCCTCC..................................................................................................................................................................................................................................... 19 0 2 0.50 1 1 0 0 0 0 0
.........................................................................................................GGTTGTTTTTTGTTAGTTCAC............................................................................................................................. 21 0 2 0.50 1 1 0 0 0 0 0
...................................GTTCCACACGCCGTTCATTCT................................................................................................................................................................................................... 21 0 2 0.50 1 1 0 0 0 0 0
..................................................................................................................................................................................................................TAGCATTTAATACATGGTACG.................... 21 0 2 0.50 1 1 0 0 0 0 0
.............................................................................................................................................................TCGCTAAACTCACGGGCACGT......................................................................... 21 1 2 0.50 1 0 1 0 0 0 0
..............................................................GGGTTTCTTTGGAGATGGTTT........................................................................................................................................................................ 21 2 3 0.33 1 1 0 0 0 0 0
..............................................................................................ATTGGTTGGTTGGTTGTTT.......................................................................................................................................... 19 0 3 0.33 1 1 0 0 0 0 0
.............................................................................................TATTGGTTGGTTGGTTGTTTT......................................................................................................................................... 21 0 3 0.33 1 0 0 1 0 0 0
................................................................................................TGGTTGGTTGGTTGTTTTTT....................................................................................................................................... 20 0 3 0.33 1 0 1 0 0 0 0
.....................................................................................................GGTTGGTTGTTTTTTGTT.................................................................................................................................... 18 0 3 0.33 1 1 0 0 0 0 0
...............................................................................................TTGGTTGGTTGGTTGTTTTTT....................................................................................................................................... 21 0 3 0.33 1 0 0 1 0 0 0
.................................................................................................GGTTGGTTGGTTGTTTTT........................................................................................................................................ 18 0 5 0.20 1 1 0 0 0 0 0
..............................................................GGGACTCTTTAAGGATGGTTTT....................................................................................................................................................................... 22 3 6 0.17 1 1 0 0 0 0 0
................................................................GACTCTTTAAAGATGGTTTAT...................................................................................................................................................................... 21 3 14 0.07 1 1 0 0 0 0 0
.................................................................TTTCTTTAAGGATGGTTTA....................................................................................................................................................................... 19 2 16 0.06 1 0 1 0 0 0 0
..................................................................................................CTAGGTAGGTTGTTTTTTGT..................................................................................................................................... 20 3 20 0.05 1 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 2:1817786-1818036 + dps_302 GCC-----------------------------CCGCCC---ACTGTCAAGGAGGGGGAATTTCCCTGCAAGGTGTGCGGCAAGTAAGATTCCCCCCCAAAGAAATTT---CTACCA----A------------------------------------------------AAAACA-CTCGTATAACCAACCAACCAACAAAAAACAA-----------------------------------TCAA--GTGAA-AAACCATA-G------------------------------------A-ACAAATTCAGAAATCCGCAA---------GCGATTTGAGTGCCCGTGT-ATTGACTTGAGTTGAGATCGTAAA-GCACGCTATA---TCGTAAAT-TATGTACCATGCCAGC--TCT--CGAGTA----------T-TCGTA----------------A
droPer2 scaffold_7:1971623-1971873 + GCC-----------------------------CCGCCC---ACTGTCAAGGAGGGGGAATTTCCCTGCAAGGTGTGCGGCAAGTAAGATTCCCCCCCAAAGAAATTT---CTACCA----A------------------------------------------------AAAACA-CTCGTATAACCAACCAACCAACAAAAAACAA-----------------------------------TCAA--GTGAA-AAACCATA-G------------------------------------A-ACAAATTCAGAAATCCGCAA---------GCGATTTGAGTGCCCGTGT-ATTGACTTGAGTTGAGATCGTAAA-GCACGCTATA---TCGTAAAT-TATTTACCATGCCAGC--TCT--CGAGTA----------T-TCGTA----------------A
droWil2 scf2_1100000004902:9686998-9687247 + GGC--------------------------------------AACACCAAGGACGGTGATTTCCCCTGCAAGGTGTGCGGCAAGTAAGATTCCCC--CAAGACAACTTT--ATTCCA----A-----------------------------------------------------AACTTAA------------------------------AAAAAA--AT--------ACA-AAAACT--AAAAC--GTAAA-AT-ACAAA--------------ATTATTGGAAAAAGCAATTCAATTA---ACATTCGATTTTCGATCA---------ATGAATT-CGTGCTCGTA---TTGACTTGAGTTGAGACCGTAAA-GCACGCTATA---TCGTAACT-TAAATGACATTATATCCAATT--TGAATA------------GCGTA----------------A
droVir3 scaffold_13047:713324-713574 - GACAGCATCAAAAGACAGCAGCAACAGCAACAATTCCAA-TACAGCCAAGGAGAGTGAATTTCCCTGCAAGGTGTGCGGCAAGTAAGATTCCCC--CAAGAAAATAT---CCACAA----C-----------------------------------------------------AATTCGTAAAACC---T----------------A-AA-----A--T------------------ACCAGC-------------T--CATG------------------------------------A---AAATTTGA-ATTACGCAAGCATATTGAGCGATTTGAGTGCCCGTA--------TTGAGTTAAGGCCGTAAA-GCACGTTATA---TCGTAGCCGT----------------AACT--TTCGTCTTAAAAGTTAT-TCGTA----------------A
droMoj3 scaffold_6540:4704118-4704387 - GCA--------------------------ACAATTCCAA-TATGCCCAAGGACAGTGAATTTCCCTGCAAGGTGTGCGGCAAGTAAGATTCCCC--CAAGAAACTAT---CCAACA--------------------------------------------------------ACAATTCGTAAAAT--ACT-----------------AAAAACAAA--TA--------CC-------AA---ATT--GTCAA-GC-TCATAAGAGAATCTTAAAATTTATTG-----------------A---GAATTTTGAATTTCGCAAGCATATTGAGCGATTTGAGTGCCCGTA--------TTGAGTTAAGACCGTAAA-GCACGCTATA---TCGTAACC---------GTACCGT--AACT--TTCGTCTCAAAAGATAT-TCGTTCG--------------A
droGri2 scaffold_14906:5610100-5610353 + TCC----------------------------------AA-TATTGCAAAGGACACCGAGTTCCCCTGCAAGGTGTGCGGCAAGTAAGAGTCAAA--AA--TAAATAT---ATATAC----A--------------------TATATATTTAAAAATAAAGAGAATATCTACAACAATTCGTAA-----------------AAAACATA-AA-----A------------TT-------GACAAC-------------T--CATG------------------------------------AAAAAAATTTGA-ATTACGCAAGCATATTGAGCGATTTGAGTGCCCGTA--------TTGAGTTAAGACCGTAAA-GCACGTTATA---TCGTAACCGT----------------AACT--TTCGTATCAAGACATAT-TCGTA----------------A
droAna3 scaffold_13340:4754193-4754412 + GTC--------------------------------CCG---AATGCCAAGGAGGGCGAATTCCCCTGCAAGGTGTGCGGCAAGTAAGATTCCCC--CAAAGCAATTT---CTACCA----C-----------------------------------------------------AATCCAAAACAT--GCCA---------CAACAC-----------------------------------TATC--GTGCA-GT-TTCCAAG------------------------------------A-AACAATTCGAAAATCCGCAA---------GCGATTTGAGTGCCCGTA---TTGACTTGAGTTGAGATCGTAAA-GCACGTTGTACTACCGTAAAA-TAA--------------AACC--CATATA------------CGATATA---------------
droBip1 scf7180000396359:436449-436668 - GTC--------------------------------CCG---AATGCCAAGGACGGCGAATTCCCCTGCAAGGTGTGCGGCAAGTAAGATTCCCC--CAAAGCAATTT---CTACCA----A-----------------------------------------------------AATCCAAAACAT--GCCA---------AAACAC-----------------------------------TATC--GTGCA-GT-TTCCAAG------------------------------------A-AACAATTCGAAAATCCGCAA---------GCGATTTGAGTGCCCGTA---TTGACTTGAGTTGAGATCGTAAA-GCACGTTGTACTACCGTAAAA-T----------------AAGCCCCATATA------------CGATATA---------------
droKik1 scf7180000302388:1791773-1791993 + TAC---------------------------------CAGGTGCCGCCAAGGAGGGCGAGTTTCCCTGCAAGGTGTGCGGCAAGTAAGATTCCCCCCCAAAA----------------G--CCAAAACCAAATC--------------------------------------------------------------------------AAAAACCATA--AAGATATAAGCA-GAA---AAAAACACCTGTGACCAT-CCTTTTC------------------------------------AAAAAAATTCGAAAGTCCGCAA---------GCGATTTGAGTGCCCGTAT-ATTGACTTGAGTTGAGATCGTAAA-GCACGCTGTA---CCGTAAAA-T----------------AACT--C---------------------------------------
droFic1 scf7180000454106:1891829-1892049 + ACC-----------------------------TTACCG---CTTCCCAAGGAGGGCGAGTTCCCCTGCAAGGTGTGCGGCAAGTAAGATTCCCC--CAAAGCAATTT---CCACCA----A--------------------------------------------------------------------------------------TCAAAACAAA--AA--------CCA-AAAACAAAAACAC--GTGAA-AA-TCATATG------------------------------------A---AAATTCGAAAATCCGCAA---------GCGATTTGAGTGCCCGTA--ATTGACTTGAGTTGAGATCGTAAAAGCACGCTGTA---CCGTAAAA-T----------------AACT--TGTGTA------------TCGTATGC--------------
droEle1 scf7180000491194:465498-465706 - ACT-----------------------------TTACCA---ATTGCCAAGGAGGGCGAGTTCCCCTGCAAGGTGTGCGGCAAGTAAGATTCCCC--CAAAGCAATTT---CCAAGA----A-----------------------------------------------------AACCCAA-----------------------------------------------------A---AAAAACAC--GTGAA-AA-TCGTATG------------------------------------A---AAATTGAAAAATCCGCAA---------GTGATTTGAGTGCCCGTA--ATTGACTTGAGTTGAGATCGTAAACGCACGCTGTA---CCGTAAAA-T----------------AACT--TCTGTA------------TCGTATGC--------------
droRho1 scf7180000779488:512683-512888 - ACT-----------------------------TTACCA---ATTGCCAAGGAGGGCGAGTTCCCCTGCAAGGTGTGCGGCAAGTAAGATTCCCC--CAAAACAATTT---GCAACAATCAC--------------------------------------------------------------------------------------AAAAA-----------------AA-------AAAAAAAC--GTGAA-A--TCGTATG------------------------------------A---AAATTCGAAAATCCGCAA---------GCGATTTGAGTGCCCGTA--A-----TTGAGTTGAGATCGTAAACGCACGTTGTA---CCGTAAAA-T----------------AACT--TCTGTA------------TCGTATGC--------------
droBia1 scf7180000302402:4590245-4590456 + ACC-----------------------------CTGCCC---ATTGCCAAGGAGGGCGAGTTCCCCTGCAAGGTGTGCGGCAAGTAAGATTCCCC--CAAAGCAATTT---CCACCA----------------------------------------------------------------------------------------------ATGCATAAAAA--------CC-------AAAAACAC--GTGAA-AG-TCGTAT-------------------------------------A---AAATTCGAAAATCCGCAA---------GCGATTTGAGTGCCCGTAAAATTGACTTGAGTTGAGATCGTAAACGCACGCTGTA---CCGTAAA--T----------------AACT--TGTGTA------------TCGTATG---------------
droTak1 scf7180000414118:24222-24422 - GCG-----------------------------TTGCCA---ATTGCCAAGGAGGGCGAGTTTCCCTGCAAGGTGTGCGGCAAGTAAGATTCCCC--CAAAGCAATTT---CCATCA----C--------------------------------------------------------------------------------------AAAAA------------------------------TACC--GTGAA-AA-TCGTATG------------------------------------A---AAATTCGAAAGTCCGCAA---------GCGATTTGAGTGCCCGTA--ATTGACTTGAGTTGAGATCGTAAACGCACGCTGTA---CCGTAAAA-T----------------AACT--TGTGTA------------TCGTATG---------------
droEug1 scf7180000407136:403472-403672 + ACT-----------------------------TTACCC---ATAGCCAAGGAGGGCGAGTTCCCCTGCAAGGTGTGCGGCAAGTAAGATTCCCC--CAAAGCAATTT---CCACCA--------------------------------------------------------------------------------------------------------------------------AAAAACAC--GTGAA-AA-TCGTATG------------------------------------A---AAATTCGAAAATCCGCAA---------GCGATTTGAGTGCCCGTA--ATTGACTTGAGTTGAGATCGTAAACGCACGCTGTA---CCGTAAAA-T----------------AACT--TGTGTA----------TATCGTATG---------------
dm3 chr3R:5293531-5293751 - AAC-----------------------------ATACCG---ATTGCCAAGGAGGGCGAGTTCCCCTGCAAGGTGTGCGGCAAGTAAGATTCCCC--CAAAGCAATTT---CCATCA----C--------------------------------------------------------------------------------------AAAAAGCATA--AA--------CC-------AAAGACAC--GTGAA-AT-CCGTATG------------------------------------A---AAATTCGAAAATCCGCAA---------GTGATTTGAGTGCCCGTA--ATTGACTTGAGTTGAGATCGTAAACGCACGCTGTA---CCGTAAAC-T----------------GACT--TGTGTA------------TCGTATGCCGTAT--------A
droSim2 3r:15733316-15733544 + dsi_23025 AAC-----------------------------ATACCG---ATTGCCAAGGAGGGCGAGTTCCCCTGCAAGGTGTGCGGCAAGTAAGATTCCCC--CAAAGCAATTT---CCATCA----C--------------------------------------------------------------------------------------AAAAAGCATA--AA--------CC-------AAAAACAC--GTGAA-AT-CCGTATG------------------------------------A---AAATTCGAAAATCCGCAA---------GTGATTTGAGTGCCCGTA--ATTGACTTGAGTTGAGATCGTAAACGCACGCTGTA---CCGTAAAC-T----------------GACT--TGTGTA------------TCGTATGCCGTATACCGTATAC
droSec2 scaffold_0:16602774-16602995 + AAC-----------------------------ATACCG---ATTGCCAAGGAGGGCGAGTTCCCCTGCAAGGTGTGCGGCAAGTAAGATTCCCC--CAAATCAATTT---CCATCA----C--------------------------------------------------------------------------------------AAAAAGCATA--AA--------CC-------AAAAACAC--GTGAA-AT-CCGTATG------------------------------------A---AAATTCGAAAATCCGCAA---------GTGATTTGAGTGCCCGTA--ATTGACTTGAGTTGAGATCGTAAACGCACGCTGTA---CCGTAAAC-T----------------GACT--TGTGTA------------TCGTATGCCGAATA-------C
droYak3 3R:9342255-9342494 - AAC-----------------------------ATAGCA---ATTGCCAAGGAGGGCGAGTTCCCCTGCAAGGTGTGCGGCAAGTAAGATTCCCC--CAAAGCAATTT---CCACCA-TCACCACCACCACCACCACCACAA------------------------------------------------------------------AAAAAGCATA--AA--------CC-------AAAAACAC--GTGAA-AT-CCGTATG------------------------------------A---GAATTCGAAAATCCGCAA---------GTGATTTGAGTGCCCGTA--ATTGACTTGAGTTGAGATCGTAAACGCACGCTGTA---CCGTAAAACT----------------GACT--TGTGTA------------TCGTATGCC-------------
droEre2 scaffold_4770:16310219-16310457 + AAC-----------------------------ATACCC---ATTGCCAAGGAGGGCGAGTTCCCCTGCAAGGTGTGCGGCAAGTAAGATTCCCC--CAAAGCAATTTAACCCACCA-C--CCACCACCACCACAACCACCA------------------------------------------------------------------TAAAAGCATA--AA--------CC-------AAAAACAC--GTGAA-AT-CCGTATG------------------------------------A---AAATTCGAAAATCCGCAA---------GTGATTTGAGTGCCCGTA--ATTGACTTGAGTTGAGATCGTAAACGCACGCTGTA---CCGTAAAC-T----------------GACT--TGTGTA------------TCGTATGC--------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
GCC-----------------------------CCGCCC---ACTGTCAAGGAGGGGGAATTTCCCTGCAAGGTGTGCGGCAAGTAAGATTCCCCCCCAAAGAAATTT---CTACCA----A------------------------------------------------AAAACA-CTCGTATAACCAACCAACCAACAAAAAACAA-----------------------------------TCAA--GTGAA-AAACCATA-G------------------------------------A-ACAAATTCAGAAATCCGCAA---------GCGATTTGAGTGCCCGTGT-ATTGACTTGAGTTGAGATCGTAAA-GCACGCTATA---TCGTAAAT-TATGTACCATGCCAGC--TCT--CGAGTA----------T-TCGTA----------------ASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................................................................................................................................................................................................................................................................................................................................TTGAGTTGAGATCGTAAA-GCA..................................................................................2122.0040100000030
.........................................................................................................................................................................................................................................................................................................................................................................GTTGAGATCGTAAA-GCACGCT..............................................................................2121.5030200001000
...........................................................TTTCCCTGCAAGGTGTGCGGC.............................................................................................................................................................................................................................................................................................................................................................................................2121.5030100002000
...............................................................................................................................................................................................................................................................................................................................................TTTGAGTGCCCGTGT-ATTGAC........................................................................................................2121.5030100002000
.....................................................................................................................................................................................................................................................................................................................................................TGCCCGTGT-ATTGACTTGAG...................................................................................................2021.5030200001000
.................................................................................................AAAGAAATTT---CTACCA----A------------------------------------------------AAAAA...............................................................................................................................................................................................................................................................................................2221.0020000000020
..................................................................................................................................................................................................................................................................................................................................................GAGTGCCCGTGT-ATTGACTTG.....................................................................................................2121.0020200000000
.............................................................TCCCTGCAAGGTGTGCGGCA............................................................................................................................................................................................................................................................................................................................................................................................2021.0020200000000
...................................................................................................................................................................................................................................................................................................................TTCAGAAATCCGCAA---------GCGATT............................................................................................................................2121.0020100001000
.......................................................GGAATTTCCCTGCAAGGTGTG.................................................................................................................................................................................................................................................................................................................................................................................................2121.0020200000000
............................................................TTCCCTGCAAGGTGTGCGGCA............................................................................................................................................................................................................................................................................................................................................................................................2121.0020200000000
............................................................TTCCCTGCAAGGTGTGCGGC.............................................................................................................................................................................................................................................................................................................................................................................................2021.0020200000000
.................................................................................................................................................................................................................................................................................................................................................TGAGTGCCCGTGT-ATTGACTT......................................................................................................2121.0020000002000
..................................................................................................................................................................................................................................................................................................................ATTCAGAAATCCGCAA---------GCGAT.............................................................................................................................2120.5010000001000
.................................................................................................................................................................................................................................................................................................................................................................TGACTTGAGTTGAGATCGTAA.......................................................................................2120.5010000000010
...............................................................................................................................................................................................................................................................................................................................................................ATTGACTTGAGTTGAGATCGT.........................................................................................2120.5010100000000
..........................................................................................................................................................................................................................................................................................................................ATCCGCAA---------GCGATTTGAGTGC.....................................................................................................................2120.5010100000000
................................................................................................................................................................................................................................................................................................................................................................TTGACTTGAGTTGAGATCGTA........................................................................................2120.5010100000000
..........................................................ATTTCCCTGCAAGGTGTGCGG..............................................................................................................................................................................................................................................................................................................................................................................................2120.5010000001000
...........................................................................................................................................................................................................................................................................................................................................................................................................AT-TATGTACCATGCCAGC--TC...........................................2020.5010000000010
.............................................................TCCCTGCAAGGTGTGCGGCAA...........................................................................................................................................................................................................................................................................................................................................................................................2120.5010100000000
..............................................CAAGGAGGGGGAATTTCCCTG..........................................................................................................................................................................................................................................................................................................................................................................................................2120.5010100000000
..........................................................ATTTCCCTGCAAGGTGTGCGT..............................................................................................................................................................................................................................................................................................................................................................................................2120.5010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................CCATGCCAGC--TCT--CGAGTA----------T-T.....................2120.5010100000000
........................................................................................................................................................................................................................................................................................................................................................CCGTGT-ATTGACTTGAGTTGA...............................................................................................2120.5010100000000
.................................................................TGCAAGGTGTGCGGCAAGTAAGA.....................................................................................................................................................................................................................................................................................................................................................................................2320.5010000100000
...........................................................................................................................................................................................................................................................................................................................................................TGT-ATTGACTTGAGTTGAGA.............................................................................................2020.5010000000010
.........................................................AATTTCCCTGCAAGGTGTGCG...............................................................................................................................................................................................................................................................................................................................................................................................2120.5010100000000
.........................................................................................................................................................................................................................................................................................................................................................CGTGT-ATTGACTTGAGTTGAG..............................................................................................2120.5010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................TAAAT-TATGTACCATGCCAGC--.............................................2120.5010100000000
................................CCGCCC---ACTGTCAAGGAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010100000000
.............................................................................GGCAAGTAAGATTCCCCCCC............................................................................................................................................................................................................................................................................................................................................................................2020.5010100000000
.......................................................................................................ATTT---CTACCA----A------------------------------------------------AAAACA-CTCG.........................................................................................................................................................................................................................................................................................2120.5010100000000
..................................................................................................................................................................................................................................................................................................................................................................GACTTGAGTTGAGATCGTA........................................................................................1920.5010100000000
.....................................................................................................................................................................................................................................................................................................................................................................TTGAGTTGAGATCGTAAA-GCC..................................................................................2120.5010000000010
.................................................................................................................................................................................................................................................................................................................................................................................................................GTACCATGCCAGC--TCT--CGAGT...................................2120.5010100000000
..........................................................................................................................................................................................................................................................................................................................................................................TTGAGATCGTAAA-GCACGC...............................................................................1920.5010100000000
...............................................................................................................................................................................................................................................................................................................................CAA---------GCGATTTGAGTGCCCGTG................................................................................................................2120.5010100000000
.............................................................................................................................................................................................................................................................................................................................CGCAA---------GCGATTTGAGTGCC....................................................................................................................1920.5010100000000
.............................................................TCCCTGCAAGGTGTGCGGC.............................................................................................................................................................................................................................................................................................................................................................................................1920.5010100000000
.......................................................GGAATTTCCCTGCAAGGTGT..................................................................................................................................................................................................................................................................................................................................................................................................2020.5010100000000
.................................................................................................................................................................................................................................................................................................................AATTCAGAAATCCGCAA---------GCG...............................................................................................................................2020.5010100000000
.................................................................................................................................................................................................................................................................................................................................................................................CGTAAA-GCACGCTATA---TCGT....................................................................2020.5010100000000
.................................................................................................................CCA----A------------------------------------------------AAAACA-CTCGTATAACC..................................................................................................................................................................................................................................................................................2120.5010100000000
................................................................................................................ACCA----A------------------------------------------------AAAACA-CTCGTATAA....................................................................................................................................................................................................................................................................................2020.5010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................ATGTACCATGCCAGC--TCT--CGA.....................................2120.5010100000000
................................................................CTGCAAGGTGTGCGGCAAGT.........................................................................................................................................................................................................................................................................................................................................................................................2020.5010000001000
droPer2
GCC-----------------------------CCGCCC---ACTGTCAAGGAGGGGGAATTTCCCTGCAAGGTGTGCGGCAAGTAAGATTCCCCCCCAAAGAAATTT---CTACCA----A------------------------------------------------AAAACA-CTCGTATAACCAACCAACCAACAAAAAACAA-----------------------------------TCAA--GTGAA-AAACCATA-G------------------------------------A-ACAAATTCAGAAATCCGCAA---------GCGATTTGAGTGCCCGTGT-ATTGACTTGAGTTGAGATCGTAAA-GCACGCTATA---TCGTAAAT-TATTTACCATGCCAGC--TCT--CGAGTA----------T-TCGTA----------------ASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
GGC--------------------------------------AACACCAAGGACGGTGATTTCCCCTGCAAGGTGTGCGGCAAGTAAGATTCCCC--CAAGACAACTTT--ATTCCA----A-----------------------------------------------------AACTTAA------------------------------AAAAAA--AT--------ACA-AAAACT--AAAAC--GTAAA-AT-ACAAA--------------ATTATTGGAAAAAGCAATTCAATTA---ACATTCGATTTTCGATCA---------ATGAATT-CGTGCTCGTA---TTGACTTGAGTTGAGACCGTAAA-GCACGCTATA---TCGTAACT-TAAATGACATTATATCCAATT--TGAATA------------GCGTA----------------ASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
GACAGCATCAAAAGACAGCAGCAACAGCAACAATTCCAA-TACAGCCAAGGAGAGTGAATTTCCCTGCAAGGTGTGCGGCAAGTAAGATTCCCC--CAAGAAAATAT---CCACAA----C-----------------------------------------------------AATTCGTAAAACC---T----------------A-AA-----A--T------------------ACCAGC-------------T--CATG------------------------------------A---AAATTTGA-ATTACGCAAGCATATTGAGCGATTTGAGTGCCCGTA--------TTGAGTTAAGGCCGTAAA-GCACGTTATA---TCGTAGCCGT----------------AACT--TTCGTCTTAAAAGTTAT-TCGTA----------------ASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................................AA-TACAGCCAAGGAGAGTGAA..................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000100000000000000000000000000000000000000000000
.............GACAGCAGCAACAGCAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................20150.071000000000000001000000000000000000000000000000000000000000000000
...............CAGCAGCAACAGCAACAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
GCA--------------------------ACAATTCCAA-TATGCCCAAGGACAGTGAATTTCCCTGCAAGGTGTGCGGCAAGTAAGATTCCCC--CAAGAAACTAT---CCAACA--------------------------------------------------------ACAATTCGTAAAAT--ACT-----------------AAAAACAAA--TA--------CC-------AA---ATT--GTCAA-GC-TCATAAGAGAATCTTAAAATTTATTG-----------------A---GAATTTTGAATTTCGCAAGCATATTGAGCGATTTGAGTGCCCGTA--------TTGAGTTAAGACCGTAAA-GCACGCTATA---TCGTAACC---------GTACCGT--AACT--TTCGTCTCAAAAGATAT-TCGTTCG--------------ASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
TCC----------------------------------AA-TATTGCAAAGGACACCGAGTTCCCCTGCAAGGTGTGCGGCAAGTAAGAGTCAAA--AA--TAAATAT---ATATAC----A--------------------TATATATTTAAAAATAAAGAGAATATCTACAACAATTCGTAA-----------------AAAACATA-AA-----A------------TT-------GACAAC-------------T--CATG------------------------------------AAAAAAATTTGA-ATTACGCAAGCATATTGAGCGATTTGAGTGCCCGTA--------TTGAGTTAAGACCGTAAA-GCACGTTATA---TCGTAACCGT----------------AACT--TTCGTATCAAGACATAT-TCGTA----------------ASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
GTC--------------------------------CCG---AATGCCAAGGAGGGCGAATTCCCCTGCAAGGTGTGCGGCAAGTAAGATTCCCC--CAAAGCAATTT---CTACCA----C-----------------------------------------------------AATCCAAAACAT--GCCA---------CAACAC-----------------------------------TATC--GTGCA-GT-TTCCAAG------------------------------------A-AACAATTCGAAAATCCGCAA---------GCGATTTGAGTGCCCGTA---TTGACTTGAGTTGAGATCGTAAA-GCACGTTGTACTACCGTAAAA-TAA--------------AACC--CATATA------------CGATATA---------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
GTC--------------------------------CCG---AATGCCAAGGACGGCGAATTCCCCTGCAAGGTGTGCGGCAAGTAAGATTCCCC--CAAAGCAATTT---CTACCA----A-----------------------------------------------------AATCCAAAACAT--GCCA---------AAACAC-----------------------------------TATC--GTGCA-GT-TTCCAAG------------------------------------A-AACAATTCGAAAATCCGCAA---------GCGATTTGAGTGCCCGTA---TTGACTTGAGTTGAGATCGTAAA-GCACGTTGTACTACCGTAAAA-T----------------AAGCCCCATATA------------CGATATA---------------SizeHit CountTotal NormTotal
No Reads
droKik1
TAC---------------------------------CAGGTGCCGCCAAGGAGGGCGAGTTTCCCTGCAAGGTGTGCGGCAAGTAAGATTCCCCCCCAAAA----------------G--CCAAAACCAAATC--------------------------------------------------------------------------AAAAACCATA--AAGATATAAGCA-GAA---AAAAACACCTGTGACCAT-CCTTTTC------------------------------------AAAAAAATTCGAAAGTCCGCAA---------GCGATTTGAGTGCCCGTAT-ATTGACTTGAGTTGAGATCGTAAA-GCACGCTGTA---CCGTAAAA-T----------------AACT--C---------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
ACC-----------------------------TTACCG---CTTCCCAAGGAGGGCGAGTTCCCCTGCAAGGTGTGCGGCAAGTAAGATTCCCC--CAAAGCAATTT---CCACCA----A--------------------------------------------------------------------------------------TCAAAACAAA--AA--------CCA-AAAACAAAAACAC--GTGAA-AA-TCATATG------------------------------------A---AAATTCGAAAATCCGCAA---------GCGATTTGAGTGCCCGTA--ATTGACTTGAGTTGAGATCGTAAAAGCACGCTGTA---CCGTAAAA-T----------------AACT--TGTGTA------------TCGTATGC--------------SizeHit CountTotal NormTotal
No Reads
droEle1
ACT-----------------------------TTACCA---ATTGCCAAGGAGGGCGAGTTCCCCTGCAAGGTGTGCGGCAAGTAAGATTCCCC--CAAAGCAATTT---CCAAGA----A-----------------------------------------------------AACCCAA-----------------------------------------------------A---AAAAACAC--GTGAA-AA-TCGTATG------------------------------------A---AAATTGAAAAATCCGCAA---------GTGATTTGAGTGCCCGTA--ATTGACTTGAGTTGAGATCGTAAACGCACGCTGTA---CCGTAAAA-T----------------AACT--TCTGTA------------TCGTATGC--------------SizeHit CountTotal NormTotal
No Reads
droRho1
ACT-----------------------------TTACCA---ATTGCCAAGGAGGGCGAGTTCCCCTGCAAGGTGTGCGGCAAGTAAGATTCCCC--CAAAACAATTT---GCAACAATCAC--------------------------------------------------------------------------------------AAAAA-----------------AA-------AAAAAAAC--GTGAA-A--TCGTATG------------------------------------A---AAATTCGAAAATCCGCAA---------GCGATTTGAGTGCCCGTA--A-----TTGAGTTGAGATCGTAAACGCACGTTGTA---CCGTAAAA-T----------------AACT--TCTGTA------------TCGTATGC--------------SizeHit CountTotal NormTotal
No Reads
droBia1
ACC-----------------------------CTGCCC---ATTGCCAAGGAGGGCGAGTTCCCCTGCAAGGTGTGCGGCAAGTAAGATTCCCC--CAAAGCAATTT---CCACCA----------------------------------------------------------------------------------------------ATGCATAAAAA--------CC-------AAAAACAC--GTGAA-AG-TCGTAT-------------------------------------A---AAATTCGAAAATCCGCAA---------GCGATTTGAGTGCCCGTAAAATTGACTTGAGTTGAGATCGTAAACGCACGCTGTA---CCGTAAA--T----------------AACT--TGTGTA------------TCGTATG---------------SizeHit CountTotal NormTotal
No Reads
droTak1
GCG-----------------------------TTGCCA---ATTGCCAAGGAGGGCGAGTTTCCCTGCAAGGTGTGCGGCAAGTAAGATTCCCC--CAAAGCAATTT---CCATCA----C--------------------------------------------------------------------------------------AAAAA------------------------------TACC--GTGAA-AA-TCGTATG------------------------------------A---AAATTCGAAAGTCCGCAA---------GCGATTTGAGTGCCCGTA--ATTGACTTGAGTTGAGATCGTAAACGCACGCTGTA---CCGTAAAA-T----------------AACT--TGTGTA------------TCGTATG---------------SizeHit CountTotal NormTotal
No Reads
droEug1
ACT-----------------------------TTACCC---ATAGCCAAGGAGGGCGAGTTCCCCTGCAAGGTGTGCGGCAAGTAAGATTCCCC--CAAAGCAATTT---CCACCA--------------------------------------------------------------------------------------------------------------------------AAAAACAC--GTGAA-AA-TCGTATG------------------------------------A---AAATTCGAAAATCCGCAA---------GCGATTTGAGTGCCCGTA--ATTGACTTGAGTTGAGATCGTAAACGCACGCTGTA---CCGTAAAA-T----------------AACT--TGTGTA----------TATCGTATG---------------SizeHit CountTotal NormTotal
No Reads
dm3
AAC-----------------------------ATACCG---ATTGCCAAGGAGGGCGAGTTCCCCTGCAAGGTGTGCGGCAAGTAAGATTCCCC--CAAAGCAATTT---CCATCA----C--------------------------------------------------------------------------------------AAAAAGCATA--AA--------CC-------AAAGACAC--GTGAA-AT-CCGTATG------------------------------------A---AAATTCGAAAATCCGCAA---------GTGATTTGAGTGCCCGTA--ATTGACTTGAGTTGAGATCGTAAACGCACGCTGTA---CCGTAAAC-T----------------GACT--TGTGTA------------TCGTATGCCGTAT--------ASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................TGCCCGTA--ATTGACTTGAGTTGA...............................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
droSim2
AAC-----------------------------ATACCG---ATTGCCAAGGAGGGCGAGTTCCCCTGCAAGGTGTGCGGCAAGTAAGATTCCCC--CAAAGCAATTT---CCATCA----C--------------------------------------------------------------------------------------AAAAAGCATA--AA--------CC-------AAAAACAC--GTGAA-AT-CCGTATG------------------------------------A---AAATTCGAAAATCCGCAA---------GTGATTTGAGTGCCCGTA--ATTGACTTGAGTTGAGATCGTAAACGCACGCTGTA---CCGTAAAC-T----------------GACT--TGTGTA------------TCGTATGCCGTATACCGTATACSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................................................................................................................................................................................................................................................................................................................................................................AACGCACGCTGTA---CCGTAAAC-T----------------GACT--........................................2612.00200200000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................AACGCACGCTGTA---CCGTAAAC-T----------------GACC--........................................2611.00100100000000000000
droSec2
AAC-----------------------------ATACCG---ATTGCCAAGGAGGGCGAGTTCCCCTGCAAGGTGTGCGGCAAGTAAGATTCCCC--CAAATCAATTT---CCATCA----C--------------------------------------------------------------------------------------AAAAAGCATA--AA--------CC-------AAAAACAC--GTGAA-AT-CCGTATG------------------------------------A---AAATTCGAAAATCCGCAA---------GTGATTTGAGTGCCCGTA--ATTGACTTGAGTTGAGATCGTAAACGCACGCTGTA---CCGTAAAC-T----------------GACT--TGTGTA------------TCGTATGCCGAATA-------CSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
AAC-----------------------------ATAGCA---ATTGCCAAGGAGGGCGAGTTCCCCTGCAAGGTGTGCGGCAAGTAAGATTCCCC--CAAAGCAATTT---CCACCA-TCACCACCACCACCACCACCACAA------------------------------------------------------------------AAAAAGCATA--AA--------CC-------AAAAACAC--GTGAA-AT-CCGTATG------------------------------------A---GAATTCGAAAATCCGCAA---------GTGATTTGAGTGCCCGTA--ATTGACTTGAGTTGAGATCGTAAACGCACGCTGTA---CCGTAAAACT----------------GACT--TGTGTA------------TCGTATGCC-------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................................ATTGCCAAGGAGGGCGAGTTCCCC............................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
droEre2
AAC-----------------------------ATACCC---ATTGCCAAGGAGGGCGAGTTCCCCTGCAAGGTGTGCGGCAAGTAAGATTCCCC--CAAAGCAATTTAACCCACCA-C--CCACCACCACCACAACCACCA------------------------------------------------------------------TAAAAGCATA--AA--------CC-------AAAAACAC--GTGAA-AT-CCGTATG------------------------------------A---AAATTCGAAAATCCGCAA---------GTGATTTGAGTGCCCGTA--ATTGACTTGAGTTGAGATCGTAAACGCACGCTGTA---CCGTAAAC-T----------------GACT--TGTGTA------------TCGTATGC--------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/17/2015 at 10:11 PM