ID:

dps_3013

 Coordinate:

XR_group6:3183301-3183451 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-19.9 -19.5 -19.4

Flybase annnotation

exon [dpse_GLEANR_12569:5]; CDS [Dpse\GA16682-cds]; intron [Dpse\GA16682-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AATCATAAGAGAGCTGCATATTTTTTTTGAATTGCTCCGAGTGAAAGTTTGCTCACAGTGAAAGCCACATTCCGGACACTATAAAGCGGAAGTGAAGCGGAACTGTAATACAGCATACAGCTTACAGCACGCATTGCAGCATTTGGGATTCAAGGAACCCCCGAAAACAGTGTTGTGAAGTGACACACACAGAATAACAAAATGATACGGAATAGCACATATCACTACAATTTGCCTGTCGATTACCACAA
*******************************************************************************************.....(((...(((((....(((.....))))))))..)))...((((((((((((.(((...)))..))))).....)))))))*************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 M059
embryo
 SRR902012
CNS imaginal disc
 V112
male body		 GSM343916
embryo
 GSM444067
head
 SRR902011
testis
 M022
male body
...........................................................................................GTGAAGCGGAACTGTAATACAGC......................................................................................................................................... 23 0 1 3.00 3 0 0 3 0 0 0 0 0
........................................................................CGGACACTATAAAGCGGA................................................................................................................................................................. 18 0 1 2.00 2 2 0 0 0 0 0 0 0
.................................................................................................................................................................................................ATAACAAAATGATACGGA........................................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................GAACCCCCGAAAACAGTGTTGT........................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................AAGTGAAGCGGAACTGTAATACAGC......................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................ACAGTGTTGTGAAGTGAC................................................................... 18 0 1 1.00 1 0 0 0 0 0 1 0 0
......................................................................................................................................TTCAGCATTTGGGATTCAAGGAACCCCC......................................................................................... 28 1 1 1.00 1 0 1 0 0 0 0 0 0
....................................................................................................................................................TTCAAGGAACCCCCGAAAACATTGTT............................................................................. 26 1 1 1.00 1 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................AATTTGCCTGTCGATTACC.... 19 0 1 1.00 1 1 0 0 0 0 0 0 0
....................................................................................................................................................TTCAAGGAACCCCCGAAAACAGTGTTGT........................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0
..................................................GCTCACAGTGAAAGCCACATTCC.................................................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................CATATCACTACAATTTGCCTGTC........... 23 0 1 1.00 1 0 1 0 0 0 0 0 0
.ATCATAAGAGAGCTGCATATT..................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................................................CGCATTGCAGCATTTGGGA....................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................................GAAGCGGAACTGTAATACAGC......................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
................................................................................ATAAAGCGGAAGTGAAGCGGAAC.................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0
............................................................................................................................................................ACCCCCGAAAACAGTGTTGTGAAGTT..................................................................... 26 1 1 1.00 1 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................................................CACTACAATTTGCCTGTCGATTAC..... 24 0 1 1.00 1 1 0 0 0 0 0 0 0
....................................................................................AGCGGAAGTGAAGCGGAACTGTAATAC............................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................................AATAGAGCACACAGCTTACAGC........................................................................................................................... 22 2 1 1.00 1 0 0 0 0 1 0 0 0
.....................TGTTTTTGAATTGCTCCGAGTG................................................................................................................................................................................................................ 22 1 1 1.00 1 0 1 0 0 0 0 0 0
.......................TTTTTGAATTGCTCCGAGTGA............................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................CAGCACGCATTGCAGCATTTGGGATT..................................................................................................... 26 0 1 1.00 1 0 0 0 0 1 0 0 0
......................................................................TCCGGACACTATAAAGCGGA................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................................................................................................GATTCAAGGAACCCCCGAAAACAGT................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TGATACGGAATAGCACATATCACTACA...................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0
........................................................................................................GTAATAAATCATACAGCTTA............................................................................................................................... 20 2 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................................................................................................TCAAGGAACCCCCGAAAAC................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................................ATTTGCCTGTCGATTACCACA. 21 0 1 1.00 1 0 0 0 1 0 0 0 0
............................................................................................TGAAGCGGAGCTGGAATTCA........................................................................................................................................... 20 3 10 0.90 9 6 0 0 2 0 0 1 0
..............................ATTGCTCCGGGTGAAGGT........................................................................................................................................................................................................... 18 2 2 0.50 1 1 0 0 0 0 0 0 0
..........................TGGAATTGATCCGCGTGAAA............................................................................................................................................................................................................. 20 3 12 0.17 2 2 0 0 0 0 0 0 0
..........................................................TGAAGGCCAGATTCCGGGC.............................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 1
........GGGAGATGCATATTTTTT................................................................................................................................................................................................................................. 18 2 20 0.05 1 0 0 0 0 1 0 0 0

Anti-sense strand reads

TTAGTATTCTCTCGACGTATAAAAAAAACTTAACGAGGCTCACTTTCAAACGAGTGTCACTTTCGGTGTAAGGCCTGTGATATTTCGCCTTCACTTCGCCTTGACATTATGTCGTATGTCGAATGTCGTGCGTAACGTCGTAAACCCTAAGTTCCTTGGGGGCTTTTGTCACAACACTTCACTGTGTGTGTCTTATTGTTTTACTATGCCTTATCGTGTATAGTGATGTTAAACGGACAGCTAATGGTGTT
***************************************************************************.....(((...(((((....(((.....))))))))..)))...((((((((((((.(((...)))..))))).....)))))))******************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M040
female body
.................................................ACGAGTGTCACTTTCGGTGTAA.................................................................................................................................................................................... 22 0 1 1.00 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 XR_group6:3183251-3183501 - dps_3013 AATCA-----------------------------------TAAGAGAG--------CTGC---AT------A----T----TTTTTTTGAATTG----------CTCCGAGTGAAAGTT-TGCT--------------------------C----------ACAGTGAAAGCC---ACATTCCGGACACTATAA--AGCGGAA-------------------------------------------------G---TGAAGCGGAACTGTAATACAGCATACAGCTTACAGCACGCATTGCAGCATTTGGGATTCAAGGAACCCCCGAAAACAGTGTTGT-GAAGTG---------------------------------------A---CA---C--------------------------------ACACA-------------GAATAACAAAATGATACGGAATAGCACATATCACTACAATTTGCCTGTCGATTACCACAA
droPer2 scaffold_9:1477847-1478097 - dpe_2153 AATCA-----------------------------------TAAGAGAG--------CTGC---AT------A----T----TTTTTTTGAATTG----------CTCCGAGTGAAAGTT-TGCT--------------------------C----------ACAGTGAAAGCC---ACATTCCGGACACTATAA--AGCGGAA-------------------------------------------------G---TGAAGCGGAACTGTAATACAGCATACAGCTTACAGCACGCATTGCAGCATTTGGGATTCAAGGAACCCCCGAAAACAGTGTTGT-GAAGTG---------------------------------------A---CA---C--------------------------------ACACA-------------GAATAACAAAATGATACGGAATAGCACATATCACTACAATTTGCCTGTCGATTACCACAA
droWil2 scf2_1100000004540:1304917-1304972 + A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAAATGCTGCGAAATAGCACATATTCATATAATTTGCCAGTCGATTACCATAA
droVir3 scaffold_13049:7759443-7759721 - dvi_18880 GTTAA-------------------------------------TTATAA--------ATAT---AT-----------AAGATTTTGTA---ATCGTA--------TTACAAGTGAAAGTT-TGCAATTATTTG-----TAA--CGGTTTGCAACAA-----ATTAGTGAAAGCA---A--------------------------A---CCC--AACCAAG--CCGCAATTGCAGAGCG------------GAAG---TT------------------------GGCTAACGGA-------------------------------------A---ACGCTGC-AAATAGTTATACATACATAACTGTG--------------CACACAC---CCACATTGGGTGTCGTTGATGAACAGAGTGATA----AATATATAA-------ATATCTGGTCAAAATGTTTCGCAATCACACATACCAATACAATTTGCCAGTCGATTACCACAA
droMoj3 scaffold_6680:6006419-6006719 - AT--------------------------------------------------------------------------------TTGTA---ACCGCTAACGCGAGTTACCAGTGAAAGTT-TGCAGCTGTT-----TGAAA--CAGTCTGCAACAA------ATAGTGAAAGCC---C----------GCTGTGCTGCACATTAA---CACACTCGCGAA--CCGCAATTATAAAACG------------GAAA---TC------------------------GGCCAACGGA-------------------------------------A---ACGTTGT-AACGAGATTTAC--ACATAACTGTGACTTAATCCGCACACACACAC---CCGCTGTGGGTGTCATTGATGAGCAGAGTGTTACCATA--ATAT---CAAAGAAAACTTGGTCAAAATGTTTCGAAACAATACCTACCAATACAATTTGCCAGTCGATTACCACAA
droGri2 scaffold_15110:5122786-5123045 + AATAA--------------------------------------------------------------------------------------TAA----------TTAACAGTGAAAGTT-TTTG-------------CAACACACATTGCAACAC--AAATTTAGTGAAAGCT---GCA----CC-AGTTCAAATACGCACAAC---TATCCATCCTAA--ACGCTCATTTAAAGCG------------GAAG---TGT---GGA-------------------ATATTGGC-------------------------------------A---ACAACAAGCACGAGTCTT--------ATTCGTG--------------TCAATAC---TCAATTTGTGT------GATATACAGAAATATA----TATATATAA-------A--AAAAACCAATATGTTCCGCAATACAACATATCAATACAATTTGCCAGTCGACTACCATAA
droAna3 scaffold_13337:1254054-1254282 + AGTCG-------------------------------GGCCGTGGAG----------CTGCTGCA------CAA---GATATTTTGTAACAACGG----------CCCCCAGTGAAAGT--TGCAAGTGTGTGATTTT----------TTGG----------AGAGTGAAAGCC---ACATTCCGG-CGCCAAAACTACCG-TAA---CGGAAACGGAAAAGCCGGAGTTTCGGATCG------------GAAG---TG--------------------------------------------------------------------------------------------------------------------------------C---TG---C--------------------------------A-GT-----TGAGCCAAATCCGGACAAGATGCTGCGAAACGGCACCTACCAGTACAATCTGCCAGTCGATTACCACAA
droBip1 scf7180000396371:1586669-1586882 + AG------------------------------------CCAAAGACA------------------------A----GATATTTTGTAACAACGG----------CTCGCAGTGAAAGT--TGCAATTGTGTG----T----------TCGG----------ACAGTGAAAGCC---ACATTCCGG-CGCCAAAACTAGCG-TAA---CGGAAACGAATAACCCGGAGTTTCGGATCG------------GAAG---TG--------------------------------------------------------------------------------------------------------------------------------G---T-------------------------------------G-GTGCAGTTGAACCAAATCCAGACAAGATGCTGCGAAATAGCACCTACCAGTACAATCTGCCAGTCGATTACCACAA
droKik1 scf7180000302686:89747-89969 + AGCCA-----------------------------------ATAGCGAG--------CCGT---G------CA----CATATTTTGTA---ACGG----------TTTCGAGTGAAAGTT-TGCAATTGTT-----TC----------CCGAACGAACGGGCCCAGTGAAAGCCACCACATTCCGG-CGCCAAAATTAGCGGAAA---CGG------AAA--TCATAGTTTGAAATCG------------GAAGAAGTG--------------------------------------------------------------------------------------------------------------------------------C---AA---C--------------------------------A-GTGCAA-------TAATCTGGACAAAATGCTGCGGAATAGCACATATCAGTACAATCTGCCAGTTGATTACCACAA
droFic1 scf7180000453839:642856-643066 + AAG-----------------------------------CCAAAGAGAG--------CTGC---A------CAAATATATATTGTGTC---ACAG----------CTTCGAGTGAAAGTTTTGCAATTGTT-----TTGA--------CTGA----------CCAGTGAAAGCC---ACATTCCGG-CGCTAAAATAGGCGGAAA---CGG------AAA--TCGCAATTCAAGATCG------------GAAG---CA--------------------------------------------------------------------------------------------------------------------------------A---AG---A--------------------------------A-GTGCAA----------ACTAGACAAGATGCTGCGGAATAGCACATATCAGTACAATCTGCCCGTCGATTACCACAA
droEle1 scf7180000491255:764673-764897 - AATTA---------------------------CAAAAACCAAAGAGAGCTGCTGAGCTGC---A-CAACACA----TATATTTTGTA---ACAG----------CTTCGAGTGAAAGTT-TGCAATTGTT-----TT----------TTGA----------ACAGTGAAAGCC---ACATTCCGT-AGCTAAAATAGGCGGAAA---CGG------AAA--ACGCAGTTTTGGATCG------------GAAG---TG--------------------------------------------------------------------------------------------------------------------------------A---AA---C--------------------------------A-GTGCAA----------ACGTGACAAGATGCTGCGGAATAGCACCTATCAGTACAATTTGCCCGTCGATTACCACAA
droRho1 scf7180000767448:17510-17736 + AATA------------------TAGATAAACCCAAAAGCCAAAGAGAA-----GAGCTGC---A------CA----AATATTTTGTTGTAACAG----------CTTCGAGTGAAAGTT-TGCAATTATT-----TT----------TTGA----------ACAGTGAAAGCC---ACATTCCGG-CGCTAAAATAGGCGGAAA---CGG------AAA--ACGTAGTTTTGGATCG------------GAAG---TG--------------------------------------------------------------------------------------------------------------------------------A---AA---C--------------------------------A-GTGCAA----------ACTTGACAAGATGCTGCGAAATAGCACCTATCAGTACAATTTGCCCGTCGATTACCACAA
droBia1 scf7180000302428:4672403-4672616 - AGG-----------------------------------CCAAAGAGAG--------CTGCTGCA------CAAATACACATTTTGTA---ACAG----------CCGCCAGTGAAAGTT-TGCAATTGTT-----TT----------CGGA----------ACAGTGAAAGCC---ACATTCCGG-CGCTAAGATAGGCGGAAA---CGG------AAG--ACGCAGTTCGAGATCG------------GAAG---TG--------------------------------------------------------------------------------------------------------------------------------AGACAA---C--------------------------------A-GTGCAA----------ACCTGACAAGATGCTGCGGAATAGCACATATCAGTACAACCTGCCCGTCGACTACCACAA
droTak1 scf7180000415703:286513-286731 + AAG-----------------------------------CCAAAGAGAG--------CTGC---AC----ACA----AATATTTTGTA---ACGG----------CTGCGAGTGAAAGTT-TGCAATTGTTT----TT----------TCGA----------ACAGTGAAAGCC---ACATTCCGG-CGCTAAAATAGGCGGAAA---CGG------AAG--ACGGAGTTTGAGATCGGATTCGAAATCGGAAG---TG--------------------------------------------------------------------------------------------------------------------------------A---AA---C--------------------------------A-GTGCAA----------ACTCGACAAGATGCTGCGGAATAGCACCTATCAGTACAATCTGCCCGTCGATTACCACAA
droEug1 scf7180000409466:4493962-4494184 - AGTTA-----------------TTGA-------AAAAACCAAAGAGAG--------CTGC---A------CAAATATAAATTTTGTA---ACAG----------CTTCGAGTGAAAGTT-TGCAATTGTTAT-TTTT----------TTGA----------ACAGTGAAAGCC---ACATTCCGG-CGCTAAAATAGGCGGAAA---CGG------AAA--ACGGAGTTTGAGATCG------------GAAG---TG--------------------------------------------------------------------------------------------------------------------------------A---AT---C--------------------------------A-GTGCAA----------ACTAGACAAGATGTTGCGGAATAGCACATATCAGTACAATCTGCCCGTCGATTACCACAA
dm3 chr3L:12401283-12401522 - AATCA--------AATCAGAAATAG-------C-AGAGCCAAAGATAG--------CTGC---ATCATCACA----TATATTTTGTA---ACTGTAGT----GACTGCGAGTGAAAGTT-TGCAATTGTCGG---TT----------TTGA----------AGAGTGAAAGCC---GCATACC----GCTAAGATAGGCGGAAA---CGGAAACGCAAA--TCGGAGTTCGAGATCG------------GAAG---TG--------------------------------------------------------------------------------------------------------------------------------A---AA---C--------------------------------A-GTGCAA----------AAGCGACAAGATGCTGCGGAATAGCACTTACCAGTACAATCTGCCCGTCGATTACCACAA
droSim2 3l:12101840-12102078 - AGTCAACAAATCAAATG--AAATAG-------C-AAAGCCAAAGAGAG--------CTGC---AT-----------CATATTTTGTG---ACTGTAGT----GACTGCGAGTGAAAGTT-TGCAATTGTCAG---TT----------TTGA----------ACAGTGAAAGCC---GCATACC----GCTAAGATAGGCGGAAA---CGGAAACGCAAA--TCGGAGTTCGAGATCG------------GAAG---TG--------------------------------------------------------------------------------------------------------------------------------A---AA---C--------------------------------A-GTGCAA----------ACGGGACAAGATGCTGCGGAATAGCACCTACCAGTACAATCTGCCCGTCGATTACCACAA
droSec2 scaffold_0:4585199-4585436 - dse_430 AATCA--------AATC--AAATAG-------C-AGAGCCAAAGAGAA--------CTGC---ATCATCACA----CATATTTTGTG---ACTGTAGT----GACTGCGAGTGAAAGTT-TGCAATTGTCAG---TT----------TTGA----------ACAGTGAAAGCC---GCATACC----GCTAAGATAGGCGGAAA---CGGAAACGCAAA--TCGCAGTTCGAGATCG------------GAAG---TG--------------------------------------------------------------------------------------------------------------------------------A---AA---C--------------------------------A-GTGCAA----------ACGCGACAAGATGCTGCGGAATAGCACCTACCAGTACAATCTGCCCGTAGATTACCATAA
droYak3 3L:12457004-12457222 - dya_776 AAG-----------------------------------CCAAAGAGAG--------CTGC---AT-----CA----GATATTTTGTA---ACTGCTG-------CAGCGAGTGAAAGTT-TGCAATTGTCAA---TT----------TTAA----------AGAGTGAAAGCCGCCACATTCC----GCAAAGATAGGCGGAAACAACGGACACGAACA--TCGGCGTTTGAGATCG------------GAAG---TG--------------------------------------------------------------------------------------------------------------------------------A---AA---C--------------------------------A-GTGCAA----------ACGAGACAAGATGCTGCGAAATAGCACATACCAGTACAATCTGCCCGTCGATTACCATAA
droEre2 scaffold_4784:12396096-12396308 - der_791 AAG-----------------------------------CCAAAGAGAG--------CTGC---AT-----CA----GCTGTTTTGTA---ACTGTAG-------CCGCGAGTGAAAGTT-TGCAATTGTCAG---TT----------TTGA----------GCAGTGAAAGCC---ACATTCC----GCAAAGATAGGCGGAAA---CGGAAACGAACA--TCGGAGTTTGAGATCG------------GAAC---TA--------------------------------------------------------------------------------------------------------------------------------A---AG---C--------------------------------A-GTGCGA----------ACGCAACAAGATGCTGCGGAATAGCACATACCAATACAATCTGCCCGTCGATTACCACAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
AATCA-----------------------------------TAAGAGAG--------CTGC---AT------A----T----TTTTTTTGAATTG----------CTCCGAGTGAAAGTT-TGCT--------------------------C----------ACAGTGAAAGCC---ACATTCCGGACACTATAA--AGCGGAA-------------------------------------------------G---TGAAGCGGAACTGTAATACAGCATACAGCTTACAGCACGCATTGCAGCATTTGGGATTCAAGGAACCCCCGAAAACAGTGTTGT-GAAGTG---------------------------------------A---CA---C--------------------------------ACACA-------------GAATAACAAAATGATACGGAATAGCACATATCACTACAATTTGCCTGTCGATTACCACAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................................................................................................................................................................................................................................................G---TGAAGCGGAACTGTAATACAGC....................................................................................................................................................................................................................................2313.0030000000003
......................................................................................................................................................................................CGGACACTATAA--AGCGGA................................................................................................................................................................................................................................................................................................................1812.0020200000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACAAAATGATACGGA........................................1811.0010100000000
..............................................................................................................................................................................................................................................................................................................................GAACCCCCGAAAACAGTGTTGT-.....................................................................................................................................................................2211.0010100000000
.........................................................................................................................................................................................................AA-------------------------------------------------G---TGAAGCGGAACTGTAATACAGC....................................................................................................................................................................................................................................2511.0010100000000
..........................................................................................................................................................................................................................................................................................................................................ACAGTGTTGT-GAAGTG---------------------------------------A---C...................................................................................................................1811.0010000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTGCCTGTCGATTACC....1911.0010100000000
........................................................................................................................................................................................................................................................................................................................TTCAAGGAACCCCCGAAAACAGTGTTGT-.....................................................................................................................................................................2811.0010100000000
.........................................................................................................................GCT--------------------------C----------ACAGTGAAAGCC---ACATTCC...................................................................................................................................................................................................................................................................................................................................2311.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATCACTACAATTTGCCTGTC...........2311.0010010000000
.ATCA-----------------------------------TAAGAGAG--------CTGC---AT------A----T----T........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.....................................................................................................................................................................................................................................................................................................CGCATTGCAGCATTTGGGA..................................................................................................................................................................................................1911.0010100000000
.................................................................................................................................................................................................................................................................GAAGCGGAACTGTAATACAGC....................................................................................................................................................................................................................................2111.0010100000000
..............................................................................................................................................................................................ATAA--AGCGGAA-------------------------------------------------G---TGAAGCGGAAC...............................................................................................................................................................................................................................................2311.0010010000000
................................................................................................................................................................................................................................................................................................................................ACCCCCGAAAACAGTGTTGT-GAAGTT---------------------------------------........................................................................................................................2611.0010000001000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTACAATTTGCCTGTCGATTAC.....2411.0010100000000
....................................................................................................................................................................................................AGCGGAA-------------------------------------------------G---TGAAGCGGAACTGTAATAC.......................................................................................................................................................................................................................................2711.0010100000000
...................................................................................TTTTTGAATTG----------CTCCGAGTGA........................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
................................................................................................................................................................................................................................................................................................CAGCACGCATTGCAGCATTTGGGATT................................................................................................................................................................................................2611.0010000100000
....................................................................................................................................................................................TCCGGACACTATAA--AGCGGA................................................................................................................................................................................................................................................................................................................2011.0010100000000
......................................................................................................................................................................................................................................................................................................................GATTCAAGGAACCCCCGAAAACAGT...........................................................................................................................................................................2511.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATACGGAATAGCACATATCACTACA......................2711.0010100000000
.........................................................................................................................................................................................................................................................................................................................TCAAGGAACCCCCGAAAAC..............................................................................................................................................................................1911.0010010000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGCCTGTCGATTACCACA.2111.0010000001000
droPer2
AATCA-----------------------------------TAAGAGAG--------CTGC---AT------A----T----TTTTTTTGAATTG----------CTCCGAGTGAAAGTT-TGCT--------------------------C----------ACAGTGAAAGCC---ACATTCCGGACACTATAA--AGCGGAA-------------------------------------------------G---TGAAGCGGAACTGTAATACAGCATACAGCTTACAGCACGCATTGCAGCATTTGGGATTCAAGGAACCCCCGAAAACAGTGTTGT-GAAGTG---------------------------------------A---CA---C--------------------------------ACACA-------------GAATAACAAAATGATACGGAATAGCACATATCACTACAATTTGCCTGTCGATTACCACAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..........................................................................................................................................................................................................A-------------------------------------------------G---TGAAGCGGAACTGTAATACAGC....................................................................................................................................................................................................................................2413.003300000
..............................................................................................................................................................................................ATAA--AGCGGAA-------------------------------------------------G---TGAAGCGGAACT..............................................................................................................................................................................................................................................2412.002200000
................................................................................................................................................................................................AA--AGCGGAA-------------------------------------------------G---TGAAGCGGAAC...............................................................................................................................................................................................................................................2112.002200000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATTTGCCTGTCGATTACC....2112.002200000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATTTGCCTGTCGATTACC....2011.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGGAATAGCACATATCACT.........................2111.001010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATCACTACAATTTGCCT..............2011.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACAAAATGATACGGG........................................1811.001100000
..............................................................................................................................................................................................................................................................................................TACAGCACGCATTGCAGCATTTGG....................................................................................................................................................................................................2411.001001000
......................................................................................................................................................................................CGGACACTATAA--AGCGGAA-------------------------------------------------G---TGAAGCG...................................................................................................................................................................................................................................................2711.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGCCTGTCGATTACC....1811.001100000
.................................................................................................................................................................................................................................................................GAAGCGGAACTGTAATACAGC....................................................................................................................................................................................................................................2111.001100000
..................................................................................................................................................................................................................................................................AAGCGGAACTGTAATACAGCA...................................................................................................................................................................................................................................2111.001010000
..................................................................................................................................................................................................................................................................................................................................CCCCGAAAACAGTGTTGT-.....................................................................................................................................................................1811.001001000
...........................................................................................................................................................................................ACTATAA--AGCGGAA-------------------------------------------------G---TGAAGCGGAAC...............................................................................................................................................................................................................................................2611.001010000
.....................................................................................................................................................................................................................................................................................................CGCATTGCAGCATTTGGGAT.................................................................................................................................................................................................2011.001001000
.........................................................................................................................................................................................................AA-------------------------------------------------G---TGAAGCGGAACTGTAATAC.......................................................................................................................................................................................................................................2211.001100000
...................................................................................................................................................................................................................................................................AGCGGAACTGTAATACAGC....................................................................................................................................................................................................................................1911.001100000
....................................................................................................................................................................................................................................................................................................ACGCATTGCAGCATTTGGGA..................................................................................................................................................................................................2011.001001000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATAGCACATATCACTACA......................2011.001010000
droWil2
A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAAATGCTGCGAAATAGCACATATTCATATAATTTGCCAGTCGATTACCATAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATTTGCCAGTCGATTACC....2313.00320100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTGCCAGTCGATTACC....1912.00200020
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTTGCCAGTCGATTAC.....2012.00211000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTTGCCAGTCGATTACC....2111.00100010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAAATGCTGCGAAATAGC...................................2011.00101000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATTTGCCAGTCGAT........1911.00110000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTGCCAGTCGATTAC.....1811.00100010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTGCCAGTCGATTACCATAA2311.00100100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAATTTGCCAGTCGATT.......1911.00101000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATAATTTGCCAGTCGATTACCAT..2611.00100010
droVir3
GTTAA-------------------------------------TTATAA--------ATAT---AT-----------AAGATTTTGTA---ATCGTA--------TTACAAGTGAAAGTT-TGCAATTATTTG-----TAA--CGGTTTGCAACAA-----ATTAGTGAAAGCA---A--------------------------A---CCC--AACCAAG--CCGCAATTGCAGAGCG------------GAAG---TT------------------------GGCTAACGGA-------------------------------------A---ACGCTGC-AAATAGTTATACATACATAACTGTG--------------CACACAC---CCACATTGGGTGTCGTTGATGAACAGAGTGATA----AATATATAA-------ATATCTGGTCAAAATGTTTCGCAATCACACATACCAATACAATTTGCCAGTCGATTACCACAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................................................................................................................................................................................................................................................T------------------------GGCTAACGGA-------------------------------------A---ACGCTGC-AAATAGTT.............................................................................................................................................................2712.002000001000000000000000010000000000000000000000000000000000000000
........................................................................................................................TGCAATTATTTG-----TAA--CGGTT.......................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000100000000000000000000000000000000000
................................................................................................................GAAAGTT-TGCAATTATTTG-----TAA--CGGTTT......................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000001000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTTGATGAACAGAGTG......................................................................................1911.001000000000000000000000000000000000000000000000000000000000001000
...................................................................................................................................G-----TAA--CGGTTTGCAACAA-----ATT.......................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
..........................................................................................................ACAAGTGAAAGTT-TGCAATTATTTG-----T................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000010000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................CAGAGCG------------GAAG---TT------------------------GGCTAACG........................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
..................................................................................................................................................TTGCAACAA-----ATTAGTGAAAG...............................................................................................................................................................................................................................................................................................................................................2011.001000000000000100000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................CACATTGGGTGTCGTTGATGAACAGAGT.......................................................................................2811.001000000000000000000000000000000000000000000000000000000000000010
.............................................................................................................................................................................................................................................................................................................................................ACGCTGC-AAATAGTTATACA........................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................TATACATACATAACTGTG--------------CACACAC---C...................................................................................................................2611.001000100000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................TGATGAACAGAGTGATA----AA.............................................................................1911.001000000000000000000000000000000000000000000000000000000000001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACAGAGTGATA----AAT............................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAATTTGCCAGTCGATT.......2011.001000000000000000000000000000001000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................CATAACTGTG--------------CACACAC---CCACATTGGGT.........................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................T------------------------GGCTAACGGA-------------------------------------A---ACGCTGC-AAATAGT..............................................................................................................................................................2611.001000000000000000000000000000001000000000000000000000000000000000
.............................................................................................................AGTGAAAGTT-TGCAATTATT........................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000100000000000000000000000
.........................................................................................................................................................................................................................................................GAAG---TT------------------------GGCTAACGGA-------------------------------------A---ACGCT........................................................................................................................................................................2211.001000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................GGTGTCGTTGATGAACAGAGTGATA----AA.............................................................................2711.001000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TATAA-------ATATCTGGTCAAAA.................................................1911.001000000000000000100000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................GAGCG------------GAAG---TT------------------------GGCTAAC.........................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................TT------------------------GGCTAACGGA-------------------------------------A---ACGCTGC-AAAT.................................................................................................................................................................2411.001000000000000000000000010000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTTGATGAACAGAGTGATA----AA.............................................................................2411.001000000001000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCTGGTCAAAATGTTTCGCAAT......................................2411.001000000010000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTTGATGAACAGAGTGATA----...............................................................................2211.001000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................TTGCAACAA-----ATTAGTGAAAGC..............................................................................................................................................................................................................................................................................................................................................2111.001000100000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................TGATGAACAGAGTGATA----AATATATAA-------...............................................................2611.001000000000000000001000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................T------------------------GGCTAACGGA-------------------------------------A---ACGCTGC-AAAT.................................................................................................................................................................2311.001000000000000000000000000000001000000000000000000000000000000000
............................................................................................................................ATTATTTG-----TAA--CGGTTTGCAACAA-----..........................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................ATTGGGTGTCGTTGATGAACAG..........................................................................................2211.001000000000000000000000000000000000000000000000000000000000001000
.................................................................................................................................................................................................................................................................T------------------------GGCTAACGGA-------------------------------------A---ACGCTGC-AAATA................................................................................................................................................................2411.001000000000000000001000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................G---TT------------------------GGCTAACGGA-------------------------------------A---ACGCTGC-AAA..................................................................................................................................................................2411.001000000000000000001000000000000000000000000000000000000000000000
....................................................................................GTA---ATCGTA--------TTACAAGTGAAAGTT-TGC...............................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000010
............................................................................................................................................................................................................................................................G---TT------------------------GGCTAACGGA-------------------------------------A---ACGCTGC-.....................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACAGAGTGATA----AATATATAA-------AT.............................................................2711.001000000000000000000000000000000000000000000000000000000000001000
............................................................................AAGATTTTGTA---ATCGTA--------TTACAAGT..........................................................................................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................GGCTAACGGA-------------------------------------A---ACGCTGC-AAATAGTT.............................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................T------------------------GGCTAACGGA-------------------------------------A---ACGCTGC-.....................................................................................................................................................................1911.001000000000000000000000000000001000000000000000000000000000000000
.................................................................................................................................................................TTAGTGAAAGCA---A--------------------------A---CCC--AACC..................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................ATAACTGTG--------------CACACAC---CCACATT.............................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAATTTGCCAGTCGATTAC.....2211.001000000000000000000000000000000000000100000000000000000000000000
..........................................................................................................................................................................................................................................................................................GGCTAACGGA-------------------------------------A---ACGCTGC-.....................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000001000
................................................................................................................................................................................................................................................................................................................................................................................................................TGTCGTTGATGAACAGAGTGATA----A..............................................................................2411.001000000000000000000000001000000000000000000000000000000000000000
..............................................................................................................................................CGGTTTGCAACAA-----ATTAGTGAAAGCA---..........................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000010000000000000000000000000000000
........................................................................................................................................................................................................................AAG--CCGCAATTGCAGAGCG------------.................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000100000000000000000000000000
......................................................................................A---ATCGTA--------TTACAAGTGAAAGTT-TGCAA.............................................................................................................................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................GTGTCGTTGATGAACAGAGTG......................................................................................2111.001000000000000000000000000000000000000000000000000000000000001000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAA-------ATATCTGGTCAAAATGT..............................................2311.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................ACAA-----ATTAGTGAAAGCA---A--------------------------A---CCC--AA....................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000010
..........................................................................................................................................................................................................................................................................................................................................................................................................ATTGGGTGTCGTTGATGAAC............................................................................................2011.001000000000000000000000000000000000000010000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................CACATTGGGTGTCGTTGATGAACAGAG........................................................................................2711.001000000000000000000000000000000000000000000000000000000000001000
................................................................................................................................................GTTTGCAACAA-----ATTAGTGAAAGCA---A--------------------------...............................................................................................................................................................................................................................................................................................................2511.001000000000000000000000010000000000000000000000000000000000000000
....................................................................................................................................................................................................................................TGCAGAGCG------------GAAG---TT------------------------GGCTAACGG.......................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
AT--------------------------------------------------------------------------------TTGTA---ACCGCTAACGCGAGTTACCAGTGAAAGTT-TGCAGCTGTT-----TGAAA--CAGTCTGCAACAA------ATAGTGAAAGCC---C----------GCTGTGCTGCACATTAA---CACACTCGCGAA--CCGCAATTATAAAACG------------GAAA---TC------------------------GGCCAACGGA-------------------------------------A---ACGTTGT-AACGAGATTTAC--ACATAACTGTGACTTAATCCGCACACACACAC---CCGCTGTGGGTGTCATTGATGAGCAGAGTGTTACCATA--ATAT---CAAAGAAAACTTGGTCAAAATGTTTCGAAACAATACCTACCAATACAATTTGCCAGTCGATTACCACAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..................................................................................................................................................................................................................................ATTATAAAACG------------GAAA---TC------------------------GGCC............................................................................................................................................................................................................................2112.002200000
..........................................................................................................ACCAGTGAAAGTT-TGCAGCTGT.........................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
...........................................................................................................CCAGTGAAAGTT-TGCAGCT...........................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
...........................................................................................................CCAGTGAAAGTT-TGCAGC............................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTGATGAGCAGAGTGTTACC.................................................................................2411.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTGATGAGCAGAGTGTTACCATA--............................................................................2711.001000001
...........................................................................................................................................A--CAGTCTGCAACAA------ATAGTGAAAGC..............................................................................................................................................................................................................................................................................................................................................2511.001000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................ATA--ATAT---CAAAGAAAACTTGGT......................................................2211.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTGATGAGCAGAGTGTTACCATA--A...........................................................................2811.001000001
.................................................................................................................................................................................................................................................................C------------------------GGCCAACGGA-------------------------------------A---ACGTTGT-AACGAGA..............................................................................................................................................................2611.001000100
.........................................................................................................................................................................................................TAA---CACACTCGCGAA--CCGC.........................................................................................................................................................................................................................................................................................1911.001100000
...................................................................................................................................................................................................GCACATTAA---CACACTCGCGAA--CCGC.........................................................................................................................................................................................................................................................................................2511.001100000
.........................................................................................................................................................AA------ATAGTGAAAGCC---C----------GCTGT..........................................................................................................................................................................................................................................................................................................................2011.001000001
.......................................................................................................................................................................................................ATTAA---CACACTCGCGAA--CC...........................................................................................................................................................................................................................................................................................1911.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................GGTGTCATTGATGAGCAGAGT.......................................................................................2111.001000001
.........................................................................................................................................................................................................................................................................................................................................................................................................CTGTGGGTGTCATTGATGAGCAG..........................................................................................2311.001100000
droGri2
AATAA--------------------------------------------------------------------------------------TAA----------TTAACAGTGAAAGTT-TTTG-------------CAACACACATTGCAACAC--AAATTTAGTGAAAGCT---GCA----CC-AGTTCAAATACGCACAAC---TATCCATCCTAA--ACGCTCATTTAAAGCG------------GAAG---TGT---GGA-------------------ATATTGGC-------------------------------------A---ACAACAAGCACGAGTCTT--------ATTCGTG--------------TCAATAC---TCAATTTGTGT------GATATACAGAAATATA----TATATATAA-------A--AAAAACCAATATGTTCCGCAATACAACATATCAATACAATTTGCCAGTCGACTACCATAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
......................................................................................................................................................................................................................................TAAAGCG------------GAAG---TGT---GGA-------------------ATA...........................................................................................................................................................................................................................2011.00101
.............................................................................................................AGTGAAAGTT-TTTG-------------CAACA............................................................................................................................................................................................................................................................................................................................................................................1911.00110
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACCAATATGTTCCGCAATACA...................................2411.00110
....................................................................................................................................................................................................CGCACAAC---TATCCATCCTA................................................................................................................................................................................................................................................................................................1911.00110
.......................................................................................................................................................................................................................................................................................................................................................CGAGTCTT--------ATTCGTG--------------TCAATAC---....................................................................................................................2211.00101
droAna3
AGTCG-------------------------------GGCCGTGGAG----------CTGCTGCA------CAA---GATATTTTGTAACAACGG----------CCCCCAGTGAAAGT--TGCAAGTGTGTGATTTT----------TTGG----------AGAGTGAAAGCC---ACATTCCGG-CGCCAAAACTACCG-TAA---CGGAAACGGAAAAGCCGGAGTTTCGGATCG------------GAAG---TG--------------------------------------------------------------------------------------------------------------------------------C---TG---C--------------------------------A-GT-----TGAGCCAAATCCGGACAAGATGCTGCGAAACGGCACCTACCAGTACAATCTGCCAGTCGATTACCACAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................................................................................................................................................................AGTGAAAGCC---ACATTCCGG-CGCC............................................................................................................................................................................................................................................................................................................................2312.002020000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................T-----TGAGCCAAATCCGGACAAGATGCTGC...........................................2711.001000001
.................................................................................................................................GTGATTTT----------TTGG----------AGAGTGAAA................................................................................................................................................................................................................................................................................................................................................2111.001000001
.GTCG-------------------------------GGCCGTGGAG----------CTGCTGCA------CAA---G.............................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCTACCAGTACAATCTGCCAGTCGAC........2811.001010000
.................................................................................................................................................................................................................................................................G--------------------------------------------------------------------------------------------------------------------------------C---TG---C--------------------------------A-GT-----TGAGCCAAATCC.........................................................2011.001010000
....................................................................................................................................................................................................................................TTCGGATCG------------GAAG---TG--------------------------------------------------------------------------------------------------------------------------------C---TG---C--------------------------------A-............................................................................2011.001010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAATCTGCCAGTCGAT........1911.001010000
...................................................................................TGTAACAACGG----------CCCCCAGTGAA.......................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
....G-------------------------------GGCCGTGGAG----------CTGCTGCA------CAA---G.............................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCCAGTCGATTACCACA.2011.001000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCGAAACGGCACCTACC............................2011.001010000
.........................................................................................................................................................................................................................................ATCG------------GAAG---TG--------------------------------------------------------------------------------------------------------------------------------C---TG---C--------------------------------A-GT-----TGAGC................................................................2211.001010000
.......................................................................AA---GATATTTTGTAACAACGG----------C.................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
...................................................................................................................................................................................................TACCG-TAA---CGGAAACGGAAAAGCC...........................................................................................................................................................................................................................................................................................2411.001010000
...................................................................................................................AGT--TGCAAGTGTGTGATTTT----------TTGG----------AGA......................................................................................................................................................................................................................................................................................................................................................2711.001010000
.........................................................................................................................GCAAGTGTGTGATTTT----------TTG....................................................................................................................................................................................................................................................................................................................................................................1911.001000010
droBip1
AG------------------------------------CCAAAGACA------------------------A----GATATTTTGTAACAACGG----------CTCGCAGTGAAAGT--TGCAATTGTGTG----T----------TCGG----------ACAGTGAAAGCC---ACATTCCGG-CGCCAAAACTAGCG-TAA---CGGAAACGAATAACCCGGAGTTTCGGATCG------------GAAG---TG--------------------------------------------------------------------------------------------------------------------------------G---T-------------------------------------G-GTGCAGTTGAACCAAATCCAGACAAGATGCTGCGAAATAGCACCTACCAGTACAATCTGCCAGTCGATTACCACAASizeHit CountTotal NormTotal
No Reads
droKik1
AGCCA-----------------------------------ATAGCGAG--------CCGT---G------CA----CATATTTTGTA---ACGG----------TTTCGAGTGAAAGTT-TGCAATTGTT-----TC----------CCGAACGAACGGGCCCAGTGAAAGCCACCACATTCCGG-CGCCAAAATTAGCGGAAA---CGG------AAA--TCATAGTTTGAAATCG------------GAAGAAGTG--------------------------------------------------------------------------------------------------------------------------------C---AA---C--------------------------------A-GTGCAA-------TAATCTGGACAAAATGCTGCGGAATAGCACATATCAGTACAATCTGCCAGTTGATTACCACAASizeHit CountTotal NormTotal
No Reads
droFic1
AAG-----------------------------------CCAAAGAGAG--------CTGC---A------CAAATATATATTGTGTC---ACAG----------CTTCGAGTGAAAGTTTTGCAATTGTT-----TTGA--------CTGA----------CCAGTGAAAGCC---ACATTCCGG-CGCTAAAATAGGCGGAAA---CGG------AAA--TCGCAATTCAAGATCG------------GAAG---CA--------------------------------------------------------------------------------------------------------------------------------A---AG---A--------------------------------A-GTGCAA----------ACTAGACAAGATGCTGCGGAATAGCACATATCAGTACAATCTGCCCGTCGATTACCACAASizeHit CountTotal NormTotal
No Reads
droEle1
AATTA---------------------------CAAAAACCAAAGAGAGCTGCTGAGCTGC---A-CAACACA----TATATTTTGTA---ACAG----------CTTCGAGTGAAAGTT-TGCAATTGTT-----TT----------TTGA----------ACAGTGAAAGCC---ACATTCCGT-AGCTAAAATAGGCGGAAA---CGG------AAA--ACGCAGTTTTGGATCG------------GAAG---TG--------------------------------------------------------------------------------------------------------------------------------A---AA---C--------------------------------A-GTGCAA----------ACGTGACAAGATGCTGCGGAATAGCACCTATCAGTACAATTTGCCCGTCGATTACCACAASizeHit CountTotal NormTotal
No Reads
droRho1
AATA------------------TAGATAAACCCAAAAGCCAAAGAGAA-----GAGCTGC---A------CA----AATATTTTGTTGTAACAG----------CTTCGAGTGAAAGTT-TGCAATTATT-----TT----------TTGA----------ACAGTGAAAGCC---ACATTCCGG-CGCTAAAATAGGCGGAAA---CGG------AAA--ACGTAGTTTTGGATCG------------GAAG---TG--------------------------------------------------------------------------------------------------------------------------------A---AA---C--------------------------------A-GTGCAA----------ACTTGACAAGATGCTGCGAAATAGCACCTATCAGTACAATTTGCCCGTCGATTACCACAASizeHit CountTotal NormTotal
No Reads
droBia1
AGG-----------------------------------CCAAAGAGAG--------CTGCTGCA------CAAATACACATTTTGTA---ACAG----------CCGCCAGTGAAAGTT-TGCAATTGTT-----TT----------CGGA----------ACAGTGAAAGCC---ACATTCCGG-CGCTAAGATAGGCGGAAA---CGG------AAG--ACGCAGTTCGAGATCG------------GAAG---TG--------------------------------------------------------------------------------------------------------------------------------AGACAA---C--------------------------------A-GTGCAA----------ACCTGACAAGATGCTGCGGAATAGCACATATCAGTACAACCTGCCCGTCGACTACCACAASizeHit CountTotal NormTotal
No Reads
droTak1
AAG-----------------------------------CCAAAGAGAG--------CTGC---AC----ACA----AATATTTTGTA---ACGG----------CTGCGAGTGAAAGTT-TGCAATTGTTT----TT----------TCGA----------ACAGTGAAAGCC---ACATTCCGG-CGCTAAAATAGGCGGAAA---CGG------AAG--ACGGAGTTTGAGATCGGATTCGAAATCGGAAG---TG--------------------------------------------------------------------------------------------------------------------------------A---AA---C--------------------------------A-GTGCAA----------ACTCGACAAGATGCTGCGGAATAGCACCTATCAGTACAATCTGCCCGTCGATTACCACAASizeHit CountTotal NormTotal
No Reads
droEug1
AGTTA-----------------TTGA-------AAAAACCAAAGAGAG--------CTGC---A------CAAATATAAATTTTGTA---ACAG----------CTTCGAGTGAAAGTT-TGCAATTGTTAT-TTTT----------TTGA----------ACAGTGAAAGCC---ACATTCCGG-CGCTAAAATAGGCGGAAA---CGG------AAA--ACGGAGTTTGAGATCG------------GAAG---TG--------------------------------------------------------------------------------------------------------------------------------A---AT---C--------------------------------A-GTGCAA----------ACTAGACAAGATGTTGCGGAATAGCACATATCAGTACAATCTGCCCGTCGATTACCACAASizeHit CountTotal NormTotal
No Reads
dm3
AATCA--------AATCAGAAATAG-------C-AGAGCCAAAGATAG--------CTGC---ATCATCACA----TATATTTTGTA---ACTGTAGT----GACTGCGAGTGAAAGTT-TGCAATTGTCGG---TT----------TTGA----------AGAGTGAAAGCC---GCATACC----GCTAAGATAGGCGGAAA---CGGAAACGCAAA--TCGGAGTTCGAGATCG------------GAAG---TG--------------------------------------------------------------------------------------------------------------------------------A---AA---C--------------------------------A-GTGCAA----------AAGCGACAAGATGCTGCGGAATAGCACTTACCAGTACAATCTGCCCGTCGATTACCACAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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.............................................................................................................................................................................................TAAGATAGGCGGAAA---CGGAAA.....................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
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...................................................................................................................................................................................................................................TTCGAGATCG------------GAAG---TG--------------------------------------------------------------------------------------------------------------------------------A---AA---C--------------------------------A-GTGCA.......................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
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..................................AGAGCCAAAGATAG--------CTGC---AT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
AATCA--------AATCAGAAATAG-------C-AGAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.........................................................................................................TGCGAGTGAAAGTT-TGCA..............................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................A-GTGCAA----------AAGCGACAAGAT................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...................................................................................................................................G---TT----------TTGA----------AGAGTGAAAGC..............................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
....................AATAG-------C-AGAGCCAAAGATAG--------CTGC---ATC........................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGCGGAATAGCACTTACCAGTACAAA....................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................GGAGTTCGAGATCG------------GAAG---..........................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCAGTACAATCTGCCCGT............2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
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..........................................................................................ACTGTAGT----GACTGCGAGTGAAAGTT-..................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
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...CA--------AATCAGAAATAG-------C-AGAGCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
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.............................................................................ATATTTTGTA---ACTGTAGT----GACTGC..............................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
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...........................................................................................................................................................................................................................................................AG---TG--------------------------------------------------------------------------------------------------------------------------------A---AA---C--------------------------------A-GTGCAA----------AAGCGA......................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
...................................................................................................................................................................................................AGGCGGAAA---CGGAAACGCA.................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
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..............................................................................TATTTTGTA---ACTGTAGT----GACTGCGAG...........................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.................................................................................................T----GACTGCGAGTGAAAGTT-TGCAAT............................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
......................................................................................................................................................A----------AGAGTGAAAGCC---GCATACC----GC.............................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGCCCGTCGATTACC....1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................AG-------C-AGAGCCAAAGATAG--------CTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
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....................AATAG-------C-AGAGCCAAAGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................A---ACTGTAGT----GACTGCGAGTGAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................................TCGAGATCG------------GAAG---TG--------------------------------------------------------------------------------------------------------------------------------A---AA---C--------------------------------A-GTGCA.......................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................TCG------------GAAG---TG--------------------------------------------------------------------------------------------------------------------------------A---AA---C--------------------------------A-GTGCAA----------AAGCG.......................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.......................................................................................................................................................................................................................................................................................................................................................................................................A---C--------------------------------A-GTGCAA----------AAGCGACAAGATGCTG............................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000
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....................................................................................................................................................TGA----------AGAGTGAAAGCC---GCATACC----...............................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
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................................................................................................................................................................................................................................GAGTTCGAGATCG------------GAAG---TG--------------------------------------------------------------------------------------------------------------------------------A---AA---C--------------------------------A-............................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................ATTTTGTA---ACTGTAGT----GACTGCGAG...........................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.................................................................................................T----GACTGCGAGTGAAAGTT-TGC...............................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
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...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCGGAATAGCACTTACCAGT.........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
droSim2
AGTCAACAAATCAAATG--AAATAG-------C-AAAGCCAAAGAGAG--------CTGC---AT-----------CATATTTTGTG---ACTGTAGT----GACTGCGAGTGAAAGTT-TGCAATTGTCAG---TT----------TTGA----------ACAGTGAAAGCC---GCATACC----GCTAAGATAGGCGGAAA---CGGAAACGCAAA--TCGGAGTTCGAGATCG------------GAAG---TG--------------------------------------------------------------------------------------------------------------------------------A---AA---C--------------------------------A-GTGCAA----------ACGGGACAAGATGCTGCGGAATAGCACCTACCAGTACAATCTGCCCGTCGATTACCACAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................................................................................................................................................................................................................CGAGATCG------------GAAG---TG--------------------------------------------------------------------------------------------------------------------------------A---AA---C--------------------------------A-GT..........................................................................2113.00300300000000000000
...................................................................................TGTG---ACTGTAGT----GACTGCGAGT..........................................................................................................................................................................................................................................................................................................................................................................................................2213.00300300000000000000
...........................................................C---AT-----------CATATTTTGTG---ACTGTA..........................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200200000000000000
...........................................................................................................................AATTGTCAG---TT----------TTGA----------ACAGTGAAAGCC---..........................................................................................................................................................................................................................................................................................................................................2712.00200200000000000000
..................................................................................................................................................................................................................................GTTCGAGATCG------------GAAG---TG--------------------------------------------------------------------------------------------------------------------------------A---AA---C--------------------------------A-............................................................................2212.00202000000000000000
.............................................................................................................................................................................................................................TCGGAGTTCGAGATCG------------GAAG---TG--------------------------------------------------------------------------------------------------------------------------------A---AA---C--------------------------------A-............................................................................2711.00100100000000000000
.........................................................................................................................................................................................................AAA---CGGAAACGCAAA--TCG..........................................................................................................................................................................................................................................................................................1811.00100000000001000000
............AAATG--AAATAG-------C-AAAGCCAAAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000000000100000
..................................................................................................................................................................................................................................GTTCGAGATCG------------GAAG---TG--------------------------------------------------------------------------------------------------------------------------------A---AA---C--------------------------------..............................................................................2111.00101000000000000000
......................................................................................................................T-TGCAATTGTCAG---TT----------TTG....................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
...............................................................................................AGT----GACTGCGAGTGAAAGTT-TGC...............................................................................................................................................................................................................................................................................................................................................................................................2311.00100010000000000000
......................................................................................................................................................................................................................GCAAA--TCGGAGTTCGAGATCG------------GAAG---T.........................................................................................................................................................................................................................................................2611.00100100000000000000
...............................................................................................................................GTCAG---TT----------TTGA----------ACAGTGAAAA...............................................................................................................................................................................................................................................................................................................................................2111.00100000000000100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGCCCGTCGATTACCACA.2111.00100000010000000000
..................................................................................................................................................................................................................................GTTCGAGATCG------------GAAG---TG--------------------------------------------------------------------------------------------------------------------------------A---AA---C--------------------------------A-GTGCA.......................................................................2711.00101000000000000000
...............................................................................ATTTTGTG---ACTGTAGT----GACT................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010000000000000
..................................................................................................................................................................................................................................GTTCGAGATCG------------GAAG---TG--------------------------------------------------------------------------------------------------------------------------------A---AA---C--------------------------------A-GC..........................................................................2411.00100100000000000000
..............................................................................TATTTTGTG---ACTGTAGT----GACTGC..............................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010000000000000
.................................................................................................................................................................................................................................AGTTCGAGATCG------------GAAG---TG--------------------------------------------------------------------------------------------------------------------------------A---AA---...............................................................................................................2111.00110000000000000000
....................................................................................................................................................................................................................................TCGAGATCG------------GAAG---TG--------------------------------------------------------------------------------------------------------------------------------A---AA---C--------------------------------A-GTGCA.......................................................................2511.00101000000000000000
................................................................................................................................................................................................................GGAAACGCAAA--TCGGAGTT.....................................................................................................................................................................................................................................................................................1911.00101000000000000000
..................................................................................................................................................................................................TAGGCGGAAA---CGGAAACGCAAA--TCGGAGTT.....................................................................................................................................................................................................................................................................................3011.00100000010000000000
.................................................................................................................................................................................................................................AGTTCGAGATCG------------GAAG---TG--------------------------------------------------------------------------------------------------------------------------------A---AA---C--------------------------------A-GC..........................................................................2511.00110000000000000000
...........................................................................................................................................................................................GCTAAGATAGGCGGAAA---CGGAAACGC..................................................................................................................................................................................................................................................................................................2611.00100100000000000000
............................................................................................................GAGTGAAAGTT-TGCA..............................................................................................................................................................................................................................................................................................................................................................................................1511.00100000010000000000
...........................................................................................................................................................................................................................................CG------------GAAG---TG--------------------------------------------------------------------------------------------------------------------------------A---AA---C--------------------------------A-GTGCAA----------ACGG........................................................2311.00100000000000001000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAATCTGCCCGTCGAT........1911.00101000000000000000
.................................................................................................................................................................................................ATAGGCGGAAA---CGGAAACGCAAA--TC...........................................................................................................................................................................................................................................................................................2511.00100010000000000000
...................................................................................................................................................................................................................................TTCGAGATCG------------GAAG---TG--------------------------------------------------------------------------------------------------------------------------------A---AA---C--------------------------------..............................................................................2011.00100100000000000000
...............................................................................................AGT----GACTGCGAGTGA........................................................................................................................................................................................................................................................................................................................................................................................................1511.00100000001000000000
...................................................................................................................................G---TT----------TTGA----------ACAGTGAAA................................................................................................................................................................................................................................................................................................................................................1611.00100000000001000000
......................................................................................................................................................A----------ACAGTGAAAGCC---GG........................................................................................................................................................................................................................................................................................................................................15120.08100000010000000000
droSec2
AATCA--------AATC--AAATAG-------C-AGAGCCAAAGAGAA--------CTGC---ATCATCACA----CATATTTTGTG---ACTGTAGT----GACTGCGAGTGAAAGTT-TGCAATTGTCAG---TT----------TTGA----------ACAGTGAAAGCC---GCATACC----GCTAAGATAGGCGGAAA---CGGAAACGCAAA--TCGCAGTTCGAGATCG------------GAAG---TG--------------------------------------------------------------------------------------------------------------------------------A---AA---C--------------------------------A-GTGCAA----------ACGCGACAAGATGCTGCGGAATAGCACCTACCAGTACAATCTGCCCGTAGATTACCATAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACAAGATGCTGCGGAATAGCAC.................................2411.0010100
................................................................................................GT----GACTGCGAGTGAAAGTT-TG................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCACCTACCAGTACAATCTGCCC..............2611.0010010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACAAGATGCTGCGGAATAGCACCT...............................2611.0010100
............................................................................................................................................................................................................................................................................................................................................................................................................................................A-GTGCAA----------ACGCGACAAGATGCT.............................................2211.0010001
.............................................................................................................................................................................................TAAGATAGGCGGAAA---CGGA.......................................................................................................................................................................................................................................................................................................1911.0011000
............................................................................................................................................................................................CTAAGATAGGCGGAAA---CGGAAA.....................................................................................................................................................................................................................................................................................................2211.0010010
........................................................................................................................................................................................................................AAA--TCGCAGTTCGAGATCG------------GAA..............................................................................................................................................................................................................................................................2211.0010010
...........................................................................................CTGTAGT----GACTGCGAGTGAAA......................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
...............................................................................................................................................................................................................................GCAGTTCGAGATCG------------GAAG---TG--------------------------------------------------------------------------------------------------------------------------------........................................................................................................................2011.0011000
......................................................................................G---ACTGTAGT----GACTGCGAGTGAAAGTT-TG................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100
.....................................GCCAAAGAGAA--------CTGC---ATCATCAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
.....................ATAG-------C-AGAGCCAAAGAGAA--------CTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
......................................................................................................................................................................................C----GCTAAGATAGGCGGAAA---CGGA.......................................................................................................................................................................................................................................................................................................2211.0010001
................................................................................................GT----GACTGCGAGTGAAAGT....................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAA----------ACGCGACAAGATGCTGCG..........................................2411.0010010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................AA----------ACGCGACAAGATGCTGC...........................................1911.0010010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGACAAGATGCTGCGGAATAGCACC................................2711.0011000
...............................................................................................................................GTCAG---TT----------TTGA----------ACAGTGA..................................................................................................................................................................................................................................................................................................................................................1811.0010010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAGATGCTGCGGAATAGC...................................2111.0010010
.................................................................................TTTGTG---ACTGTAGT----GACTGCGA............................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
..................................................................................................................................................................................................................................................................................................................................................................................................A---AA---C--------------------------------A-GTGCAA----------ACGCGAC.....................................................1811.0011000
..................................................................................................................................AG---TT----------TTGA----------ACAGTGAAAGCC---G.........................................................................................................................................................................................................................................................................................................................................2111.0010010
droYak3
AAG-----------------------------------CCAAAGAGAG--------CTGC---AT-----CA----GATATTTTGTA---ACTGCTG-------CAGCGAGTGAAAGTT-TGCAATTGTCAA---TT----------TTAA----------AGAGTGAAAGCCGCCACATTCC----GCAAAGATAGGCGGAAACAACGGACACGAACA--TCGGCGTTTGAGATCG------------GAAG---TG--------------------------------------------------------------------------------------------------------------------------------A---AA---C--------------------------------A-GTGCAA----------ACGAGACAAGATGCTGCGAAATAGCACATACCAGTACAATCTGCCCGTCGATTACCATAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................................................................................................................................................................................................GGAAACAACGGACACGAACA--TCGGC........................................................................................................................................................................................................................................................................................2512.00201100000000
...............................................................................ATTTTGTA---ACTGCTG-------CAGCGAGTGAAAGT....................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000010000
.......................................................................A----GATATTTTGTA---ACTGCTG-------C.................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAGTACAATCTGCCCGTCGATTAC.....2611.00100100000000
.........................................................................................................................................................................................................AAACAACGGACACGAACA--TCGGCGT......................................................................................................................................................................................................................................................................................2511.00100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCAGTACAATCTGCCCGTCGATTACC....2911.00101000000000
..................................................................................................................................AA---TT----------TTAA----------AGAGTGAAAGCCGC...........................................................................................................................................................................................................................................................................................................................................2211.00101000000000
...............................................................................ATTTTGTA---ACTGCTG-------CAGCGAGTGAA.......................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGACAAGATGCTGCGA.........................................1811.00100010000000
............................................................................................................................................................................................................................................................G---TG--------------------------------------------------------------------------------------------------------------------------------A---AA---C--------------------------------A-GTGCAA----------ACGAGACAAGATG...............................................2711.00100000010000
.................................................................................................................................................................................................ATAGGCGGAAACAACGGACACGAACA--.............................................................................................................................................................................................................................................................................................2611.00101000000000
...................................................................................................................................................................................................................................TTTGAGATCG------------GAAG---TG--------------------------------------------------------------------------------------------------------------------------------A---AA---C--------------------------------A-GTG.........................................................................2411.00100000010000
................................................................................................................................................................................................................GGACACGAACA--TCGGCGTT.....................................................................................................................................................................................................................................................................................1911.00101000000000
.........................................................................................................................................................................................................AAACAACGGACACGAACA--TCG..........................................................................................................................................................................................................................................................................................2111.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTACAATCTGCCCGTCGATTACC....2411.00100000010000
.........................................................................................................AGCGAGTGAAAGTT-TGCAATTGTC........................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
..................................................................................................................................................................................................................................GTTTGAGATCG------------GAAG---TG--------------------------------------------------------------------------------------------------------------------------------A---AA---C--------------------------------A-GTGC........................................................................2611.00100000010000
..................................................................................................................................................................................................................................GTTTGAGATCG------------GAAG---TG--------------------------------------------------------------------------------------------------------------------------------A---AA---C--------------------------------..............................................................................2111.00100000010000
......................................................................................................................................................................................................................GAACA--TCGGCGTTTGAGATCG------------GAAG---C.........................................................................................................................................................................................................................................................2611.00110000000000
...........................................................................................................................AATTGTCAA---TT----------TTAA----------AGAGTGAAAGCCGC...........................................................................................................................................................................................................................................................................................................................................2911.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAA----------ACGAGACAAGATGCTGCG..........................................2411.00100000010000
................................................................................................................................................................................................GATAGGCGGAAACAACGGACAC....................................................................................................................................................................................................................................................................................................2211.00100000010000
..........................................................................................ACTGCTG-------CAGCGAGTGAAAGTT-TGC...............................................................................................................................................................................................................................................................................................................................................................................................2511.00110000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCAGTACAATCTGCCCGTCGATTACC....2811.00100000010000
......................................................................................................................................................................GAAAGCCGCCACATTCC----GCAAA..........................................................................................................................................................................................................................................................................................................................2211.00101000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAATCTGCCCGTCGATT.......2011.00100000010000
...............................................................................................................................................................................................AGATAGGCGGAAACAACGG........................................................................................................................................................................................................................................................................................................1911.00100000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATACCAGTACAATCTGCCCGTCG..........2511.00100000010000
......................................................................................A---ACTGCTG-------CAGCGAGTGAAAGTT-TGC...............................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................A----------ACGAGACAAGATGCTGC...........................................1811.00101000000000
..............................................................................TATTTTGTA---ACTGCTG-------CAGCGAGTG.........................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGCCCGTCGATTACC....1811.00110000000000
.....................................................................................................................................................................................................................................TGAGATCG------------GAAG---TG--------------------------------------------------------------------------------------------------------------------------------A---AA---C--------------------------------..............................................................................1811.00101000000000
..............................................................................................................GTGAAAGTT-TGCAATTGTCAA---T..................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
........................................................................................................................................................................................................................................GATCG------------GAAG---TG--------------------------------------------------------------------------------------------------------------------------------A---AA---C--------------------------------A-GTGC........................................................................2011.00101000000000
..........................................................................................................................................................................................................AACAACGGACACGAACA--TCGGCGT......................................................................................................................................................................................................................................................................................2411.00101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCTGCCCGTCGATTACCA...2011.00101000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCTGCCCGTCGATTACC....2011.00100100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCAGTACAATCTGCCCGT............2111.00101000000000
..................................................................................TTGTA---ACTGCTG-------CAGCGAG...........................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
....................................................................................................................................................................................................................................TTGAGATCG------------GAAG---TG--------------------------------------------------------------------------------------------------------------------------------A---AA---C--------------------------------..............................................................................1911.00100000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCTGCCCGTCGATTACCAT..2111.00100000010000
.............................................................................................................................................................................................AAAGATAGGCGGAAACAAC..........................................................................................................................................................................................................................................................................................................1911.00100000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAATCTGCCCGTCGAT........1911.00110000000000
...............................................................................................................................GTCAA---TT----------TTAA----------AGAGTGAA.................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGCGAAATAGCACATACCA...........................2211.00101000000000
..................................................................................................................................AA---TT----------TTAA----------AGAGTGAAAGCCGCC..........................................................................................................................................................................................................................................................................................................................................2311.00101000000000
..................................................................................................................................................................................................................................GTTTGAGATCG------------GAAG---TG--------------------------------------------------------------------------------------------------------------------------------A---AA---C--------------------------------A-GTGCA.......................................................................2711.00100000010000
..........................................................................................................................................................................................................AACAACGGACACGAACA--TCGGC........................................................................................................................................................................................................................................................................................2211.00100000010000
................................................................................TTTTGTA---ACTGCTG-------CAGCGA............................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAA----------ACGAGACAAGATGCTGCGAAAT......................................2811.00100000010000
...........................................................................................................................AATTGTCAA---TT----------TTAA----------AGAGTGAAAGC..............................................................................................................................................................................................................................................................................................................................................2611.00100000010000
...............................................................................................................................................................................................AGATAGGCGGAAACAACGGACACGAA.................................................................................................................................................................................................................................................................................................2611.00101000000000
droEre2
AAG-----------------------------------CCAAAGAGAG--------CTGC---AT-----CA----GCTGTTTTGTA---ACTGTAG-------CCGCGAGTGAAAGTT-TGCAATTGTCAG---TT----------TTGA----------GCAGTGAAAGCC---ACATTCC----GCAAAGATAGGCGGAAA---CGGAAACGAACA--TCGGAGTTTGAGATCG------------GAAC---TA--------------------------------------------------------------------------------------------------------------------------------A---AG---C--------------------------------A-GTGCGA----------ACGCAACAAGATGCTGCGGAATAGCACATACCAATACAATCTGCCCGTCGATTACCACAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGATGCTGCGGAATAGCA..................................2112.0020000200
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAAGATGCTGCGGAATAGC...................................2212.0020000110
............................................................................................................................................................................................................................................................C---TA--------------------------------------------------------------------------------------------------------------------------------A---AG---C--------------------------------A-GTGCGA----------ACGCAA......................................................2012.0020001100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGATGCTGCGGAATAGC...................................1911.0010000100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATACCAATACAATCTGCCCGT............2311.0011000000
...............................................................................................................................GTCAG---TT----------TTGA----------GCAGTGAAAGCC---ACATTC....................................................................................................................................................................................................................................................................................................................................2911.0010000100
.....................................................................................................................................................................................CC----GCAAAGATAGGCGGAAA---CGGAAAC....................................................................................................................................................................................................................................................................................................2611.0010000100
.............................................................................................................................................................................................AAAGATAGGCGGAAA---CGGAAAC....................................................................................................................................................................................................................................................................................................2211.0010000100
.................................................................................................................................................................GCAGTGAAAGCC---ACATTCC----G..............................................................................................................................................................................................................................................................................................................................2011.0010001000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCAATACAATCTGCCCGT............2111.0010000100
.............................................................................................................................................................................................AAAGATAGGCGGAAA---CGGAA......................................................................................................................................................................................................................................................................................................2011.0010010000
......................................................................................................................................................................................................................GAACA--TCGGAGTTTGAGATCG------------GA...............................................................................................................................................................................................................................................................2311.0010000100
...........................................................................................CTGTAG-------CCGCGAGTGAAAGTT-TGCAATT...........................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAGATGCTGCGGAATAGCACAT...............................2511.0010000100
...................................................................................................................................................................................................................AACGAACA--TCGGAGTTTGAGATC..............................................................................................................................................................................................................................................................................2311.0010100000
..G-----------------------------------CCAAAGAGAG--------CTGC---AT-----CA----GCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000010
.............................................................................................GTAG-------CCGCGAGTGAAAGTT-TGC...............................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
.........................................................................................................................................................................................................AAA---CGGAAACGAACA--TCGGAGT......................................................................................................................................................................................................................................................................................2211.0011000000
.....................................................................................................................................................................................................................CGAACA--TCGGAGTTTGAGATCG------------.................................................................................................................................................................................................................................................................2211.0011000000
.............................................................................................................................................................................................AAAGATAGGCGGAAA---CGG........................................................................................................................................................................................................................................................................................................1811.0010100000
..........................................................................................................................................................................................................................A--TCGGAGTTTGAGATCG------------GAAC---TA--------------------------------------------------------------------------------------------------------------------------------A---AG---C--------------------------------..............................................................................2711.0011000000
...............................................................................................................................GTCAG---TT----------TTGA----------GCAGTGAAAGCC---..........................................................................................................................................................................................................................................................................................................................................2311.0011000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGA----------ACGCAACAAGATGCT.............................................2111.0010000100
..................................................................................................................................................................................................................................GTTTGAGATCG------------GAAC---TA--------------------------------------------------------------------------------------------------------------------------------A---AG---C--------------------------------..............................................................................2111.0010100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATACCAATACAATCTGCCCGTC...........2311.0010100000
....................................................................................GTA---ACTGTAG-------CCGCGAGTGAAA......................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
...............................................................................................................................GTCAG---TT----------TTGA----------GCAGTGAAAGCC---ACAT......................................................................................................................................................................................................................................................................................................................................2711.0010000100
............................................................................................TGTAG-------CCGCGAGTGAAAGT....................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
.............................................................................................GTAG-------CCGCGAGTGAAAGTT-TGCAAT............................................................................................................................................................................................................................................................................................................................................................................................2511.0010000100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAGATGCTGCGGAATAGCAC.................................2311.0010000100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCAATACAATCTGCCCGTCGA.........2411.0010000100
...........................................................................................CTGTAG-------CCGCGAGTGAAAGTT-T.................................................................................................................................................................................................................................................................................................................................................................................................2211.0010001000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAGATGCTGCGGAATA.....................................1911.0010000100
....................................................................................................................................................................................................................................TTGAGATCG------------GAAC---TA--------------------------------------------------------------------------------------------------------------------------------A---AG---C--------------------------------A-GTGCGA----------AC..........................................................2811.0010000100
......................................................................................A---ACTGTAG-------CCGCGAGTGAAAGTT-TGCA..............................................................................................................................................................................................................................................................................................................................................................................................2711.0010000100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAGATGCTGCGGAATAGCA..................................2211.0010000010
..........................................................................................................................................................................................................AA---CGGAAACGAACA--TCGGA........................................................................................................................................................................................................................................................................................1911.0010010000
......................................................................................................................................................................................................................GAACA--TCGGAGTTTGAGATC..............................................................................................................................................................................................................................................................................2011.0010000100
........................................................................................................................................................................................................................................GATCG------------GAAC---TA--------------------------------------------------------------------------------------------------------------------------------A---AG---C--------------------------------A-GTGC........................................................................2011.0011000000
...................................................................................TGTA---ACTGTAG-------CCGCGAGTGAAAGT....................................................................................................................................................................................................................................................................................................................................................................................................2511.0010001000
.........................................................................................................................................................................................................................................................GAAC---TA--------------------------------------------------------------------------------------------------------------------------------A---AG---C--------------------------------A-GTGCGA----------ACGCAA......................................................2311.0010000100
....................................................................................................................................................................................................................................TTGAGATCG------------GAAC---TA--------------------------------------------------------------------------------------------------------------------------------A---AG---C--------------------------------..............................................................................1911.0010000100
.......................................CAAAGAGAG--------CTGC---AT-----CA----GCTGTTTT......................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000100
.........................................................TGC---AT-----CA----GCTGTTTTGTA---ACT.............................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
.........................................................................................................................................................................................................AAA---CGGAAACGAACA--TCGGAGTTTGAG.................................................................................................................................................................................................................................................................................2711.0010000100
.....................................................................................................................................................................................................................................TGAGATCG------------GAAC---TA--------------------------------------------------------------------------------------------------------------------------------A---AG---C--------------------------------A-GTGCGA----------ACG.........................................................2811.0010000100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGATGCTGCGGAATAGCA..................................2011.0010000100

Generated: 05/18/2015 at 05:56 AM