ID:

dps_301

 Coordinate:

2:1817168-1817404 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-8.41 -8.21 -8.07

Flybase annnotation

exon [Dpse\GA26953:7]; CDS [Dpse\GA26953-cds]; CDS [Dpse\GA26953-cds]; exon [Dpse\GA26953:8]; intron [Dpse\GA26953-in]

Repeatable elements

NameClassFamilyStrand
(CA)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TGCCCGCCGTGGAGAAGCCCTATGTTTGCGAGATTGCCGACTGTTCAGCGGTAAGTTGTAGGCCTTAAATGCTGCAGCATGTCGCCAGCTCTAGCACACCCCTCTTGAGACCTTACCCAGCCGAATGACAGCCGTAACAGACACACACACACACACACACACACACAACATCCCGCCTCACCTCACCGGCTCTTTCTGTTTACTTTCTTTTCTGTATACTGTATATAATGCTCTGTACAAAATCAAATCAACCAAATCAACCCCTCCGCCCGCCCGTCCAAATGTAGAGCTTCAGTTCGAAGGCGGCGCTGCACGGCCATGTTCGCATACACGCTTT
*******************************************************************************************.((((..........((((........(((.(((.((..((((....................................................)))))).))).)))........))))((((((...)))))).))))....***************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902011
testis
 V112
male body		 M059
embryo
 SRR902012
CNS imaginal disc
 GSM444067
head
 M022
male body		 SRR902010
ovaries
 M062
head
 GSM343916
embryo
............................CGAGATTGCCGACTGTTCAGC................................................................................................................................................................................................................................................................................................ 21 0 1 14.00 14 6 2 1 0 3 0 1 0 1 0
.......................................................................................................................................................................................................................ATACTGTATATAATGCTCTGT..................................................................................................... 21 0 1 5.00 5 1 4 0 0 0 0 0 0 0 0
............................CGAGATTGCCGACTGTTCAG................................................................................................................................................................................................................................................................................................. 20 0 1 5.00 5 1 2 0 0 0 0 0 2 0 0
....................................................................................................................................................................................................................................................................................TCCAAATGTAGAGCTTCAGTT........................................ 21 0 1 4.00 4 1 3 0 0 0 0 0 0 0 0
...........................................................................................TAGCACACCCCTCTTGAGACC................................................................................................................................................................................................................................. 21 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0
.................................................................TAAATGCTGCAGCATGTCGCC........................................................................................................................................................................................................................................................... 21 0 1 3.00 3 2 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................CAACTGGAGAGCTTGAGTTCGA..................................... 22 3 1 3.00 3 3 0 0 0 0 0 0 0 0 0
...........................................................................AGCATGTCGCCAGCTCTAGC.................................................................................................................................................................................................................................................. 20 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0
......................TGTTTGCGAGATTGCCGACTG...................................................................................................................................................................................................................................................................................................... 21 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0
..................................................................AAATGCTGCAGCATGTCGCC........................................................................................................................................................................................................................................................... 20 0 1 3.00 3 2 0 1 0 0 0 0 0 0 0
................................................................TTAAATGCTGCAGCATGTCGC............................................................................................................................................................................................................................................................ 21 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................AATGTAGAGCTTCAGTTCGAAGGCGG............................... 26 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
................................................................................................................................................................ACACACAACATCCCGCCTCA............................................................................................................................................................. 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
....................TATGTTTGCGAGATTGCCGAC........................................................................................................................................................................................................................................................................................................ 21 0 1 2.00 2 1 0 0 0 0 1 0 0 0 0
........................................................................................................................................................................................................................TACTGTATATAATGCTCTGTA.................................................................................................... 21 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0
.................................................................................TCGCCAGCTCTAGCACACCC............................................................................................................................................................................................................................................ 20 0 1 2.00 2 1 0 0 0 0 0 0 0 0 1
............................CGAGATTGCCGACTGTTCAGTT............................................................................................................................................................................................................................................................................................... 22 2 1 2.00 2 0 2 0 0 0 0 0 0 0 0
................................................................................................................TTACCCAGCCGAATGACAGCC............................................................................................................................................................................................................ 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
...........................................................................................TAGCACACCCCTCTTGAGAC.................................................................................................................................................................................................................................. 20 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TTTACTTTCTTTTCTGTATAC...................................................................................................................... 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
..........................TGCGAGATTGCCGACTGTTCCC................................................................................................................................................................................................................................................................................................. 22 2 1 2.00 2 0 2 0 0 0 0 0 0 0 0
............................................TCAGCGGTAAGTTGTAGGC.................................................................................................................................................................................................................................................................................. 19 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0
....................................................GGGTTGTAGGCCTTAAATGCT........................................................................................................................................................................................................................................................................ 21 2 1 2.00 2 1 1 0 0 0 0 0 0 0 0
........................................................TGTAGGCCTTAAATGCTGCAG.................................................................................................................................................................................................................................................................... 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
........................................CTGTTCAGCGGTGGGTTGTA..................................................................................................................................................................................................................................................................................... 20 2 1 2.00 2 0 0 2 0 0 0 0 0 0 0
........................TTTGCGAGATTGCCGACTGTT.................................................................................................................................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
..........................TGCGAGATTGCCGACTGTTC................................................................................................................................................................................................................................................................................................... 20 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................CAACTGGAGAGCTTGAGTTCG...................................... 21 3 3 1.33 4 4 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................ATGTAGAGCTTCAGTTCGAGGT.................................. 22 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.....................GTGTTTGCGAGATTGCCGAC........................................................................................................................................................................................................................................................................................................ 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................CGCCTCACCTCACCGGCTCTT............................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TTACTTTCTTTTCTGTATACT..................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................................................................ATGCTGCAGCATGTCGCCA.......................................................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................CTCTGTACAAGGTCGAATCAA...................................................................................... 21 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................GATTGCCGACTGTTCGGCGGT............................................................................................................................................................................................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................TCGGTTCGAAGGCGGCGCT........................... 19 1 2 1.00 2 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................CAACCCCTCCGCCCGCCCGTC........................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TCTGTATACTGTATATAATGC.......................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................AATGTAGAGCTTCAGTTCGAA.................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...............................GATTGCCGACTGTTCAGCG............................................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................GTAGAGCTTCAGTTCGAAGGC................................. 21 0 2 1.00 2 2 0 0 0 0 0 0 0 0 0
..................................................GTAAGTTGTAGGCCTTAAATG.......................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................AGCTTCAGTTCGAAGGCGGCG............................. 21 0 2 1.00 2 2 0 0 0 0 0 0 0 0 0
.........................TTGCGAGATTGCCGACTGTTC................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
............................................TCAGCGGTAAGTTGTAGGCC................................................................................................................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................TATATAATGCTCTGTACAAAA............................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.................................................................TAAATGCTGCAGCGTGTCGCC........................................................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................GGTTGTAGGCCTTAGATGCTG....................................................................................................................................................................................................................................................................... 21 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................CACAACATCCCGCCTCACCTC......................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................................................................GTCGCCAGCTCTGGCACACCC............................................................................................................................................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................GTTGTAGGCCTTAAATGCTGC...................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...........................GCGAGATTGCCGACTGTTCA.................................................................................................................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
.....................................................................................................................................................................................CTCACCGGCTCTTTCTGTTTA....................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TTACTTTCTTTTCTGTATACC..................................................................................................................... 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................CGAATGACAGCCGTAACAAAT................................................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TCCCGCCTCACCTCACCGGC................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................CTTAAATGCTGCAGCATGTCG............................................................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................TAAATGCTGCAGCATGTCGC............................................................................................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................CGCACACACAACATCCCGCCTT.............................................................................................................................................................. 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................AACCAAATCAACCCCTCCGCCGA................................................................. 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TATACTGTATATAATGCTCT....................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................TCAACCCCTCCGCCCGCCCGT............................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................CCTTAAATGCTGCAGCATGTC.............................................................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................GTTTGCGAGATTGCCGACTGT..................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................ATCAACCCCTCCGCCCGC................................................................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................AGTTCGAAGGCGGCGCTGCA........................ 20 0 2 1.00 2 1 0 1 0 0 0 0 0 0 0
.................................................................................................................TACCCAGCCGAATGACAGCCG........................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................AGCTCTAGCACACCCCTCTTG...................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TCCCGCCTCACCTCACCGGCT.................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................CAACCAAATCAACCCCTCCGC.................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................................................GGGGTGTAGGCCTTAAATGCT........................................................................................................................................................................................................................................................................ 21 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................................TGAGACCTTACCCAGCCGA..................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................TAGCACACCCCTCTTGAGACCT................................................................................................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................TAAGTTGTAGGCCTTGAATGC......................................................................................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................CGTCCAAATGTAGAGCTTCAG.......................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................CCAAATCAACCCCTCCGCCCG................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................CTGTATACTGTATATAATGC.......................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................CTATGTTTGCGAGATTGCC........................................................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................TGAATGCTGCGGCATGTCGCC........................................................................................................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................TGTAGAGCTTCAGTTCGAAGGCGGC.............................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................AATCAACCCCTCCGCCCGCCC.............................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................TATGTTTGCGAGATTGCCGA......................................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
......................TGTTTGCGAGATTGCCGACT....................................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................AAATCAACCAAATCAACCCCT........................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................TCTTGAGACCTTACCCAGCC....................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................GTTCAGCGGTGGGTTGTAGGC.................................................................................................................................................................................................................................................................................. 21 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...............................................................................TGTCGCCAGCTCTAGCACACCC............................................................................................................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................TGAGACCTTGCCCAGCCGAAT................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................TGTCGCCAGCTCTAGCACAC.............................................................................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................CGAAGGCGGCGCTGCACGGC.................... 20 0 2 1.00 2 1 0 0 0 1 0 0 0 0 0
........................................................................TGCAGCATGTCGCCAGCTCT..................................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............TGAAGCCCTATGTTTGCGAGA................................................................................................................................................................................................................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................AAATGCCGCAGCATGTCGCC........................................................................................................................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................ACTTTCTTTTCTGTATACTG.................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................CAAATCAACCAAATCAACCCC......................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................TCTAGCACACCCCTCTTGAGA................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................TCAGCGGTAGGTTGTGGGCC................................................................................................................................................................................................................................................................................. 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................CGCCCGTCCAAATGTAGAGCT.............................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................TGTTCAGCGGTAAGTTGTAGG................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TATAGTGCTCTGTACAAAATC............................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................CGAGATTGCCGACTGTTCAAA................................................................................................................................................................................................................................................................................................ 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
......................................GACTGTTCAGCGGTGGGTTG....................................................................................................................................................................................................................................................................................... 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................AACATCCCGCCTCACCTCACC...................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................ACACACACACAACATCCCGCC................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................CACACACACACAACATCCCGC................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................TGCGAGATTGCCGACTGTTTT.................................................................................................................................................................................................................................................................................................. 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..............................AGATTGCCGACTGTTCAGCGT.............................................................................................................................................................................................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................................................TTAAATGCTGCAGCATGTCGCC........................................................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................CTTACCCAGCCGAATGACAG.............................................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................CTTCGGTTCGAGGGCGGCGCT........................... 21 2 2 1.00 2 2 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................GGTCAACCCCTCCGCCCGCC............................................................... 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........CTGAAGCCCTATGTTTGCGAGA................................................................................................................................................................................................................................................................................................................ 22 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................GCCCAGCCGAGTGACAGCCGT.......................................................................................................................................................................................................... 21 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0
............................................TCAGCGGTGGGTTGTAGGCCT................................................................................................................................................................................................................................................................................ 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................CTGTTCAGCGGTAAGTTGTAGA................................................................................................................................................................................................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..........................................GTTCAGCGGTAAGTTGTAGGC.................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
........................................................................................CTCTGGCACACCCCTCTTGAGA................................................................................................................................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................GAATGCTGCAGCATGTCGCC........................................................................................................................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TATACTGTATATAATGCTCTG...................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................GGATACTGTATATAATGCTCT....................................................................................................... 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.............................................................................................GCACACCCCTCTTGAGACCTT............................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................TGTATACTGTATATAATGCTC........................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.................................................................................TCGCCAGCTCTAGCACACCCC........................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................ATCAGCCCCTCCGCCCGC................................................................ 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................ATTGCCGACTGTTCAGCGGT............................................................................................................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.....................ATGTTTGCGAGATTGCCGAC........................................................................................................................................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................CTTTCTTTTCTGTATACTGTA.................................................................................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................AACTGGAGAGCTTGAGTTCGA..................................... 21 3 10 0.90 9 9 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................ACTGGAGAGCTTGAGTTCGA..................................... 20 3 17 0.71 12 12 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................AACTGGAGAGCTTGAGTTCG...................................... 20 3 13 0.69 9 9 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................TTCAGTTCGAAGGCGGCGCT........................... 20 0 2 0.50 1 0 0 0 0 0 0 1 0 0 0
.....................................................................................................................................................................................................................................................................................................AGTTCGAAGGCGGCGCTGCAC....................... 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................GTAGAGCTTCAGTTCGAAGG.................................. 20 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................TCGAGGGCGGCGCTGCACG...................... 19 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................AGCTTCAGTTCGAAGGCGG............................... 19 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................TCGAAGGCGGCGCTGCACGGC.................... 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................TAGAGCTTCAGTTCGAAGGCGGCG............................. 24 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................TTCAGTTCGAAGGCGGCGCTT.......................... 21 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................GAAGGCGGCGCTGCACGG..................... 18 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................AGGCGGCGCTGCACGGCA................... 18 1 2 0.50 1 0 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................................................................................................................CTTCAGTTCGAAGGCGGCGC............................ 20 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................AGCTTCAGTTCGAGGGCGGC.............................. 20 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................CGGTTCGAAGGCGGCGCTGC......................... 20 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................GGAGCTTCGGTTCGAAGGCGGC.............................. 22 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................GCCCAGCCGAATGACGGCCGT.......................................................................................................................................................................................................... 21 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................AACTGGAGAGCTTGAGTTC....................................... 19 3 20 0.40 8 8 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................CAACTGGAGAGCTTGAGTTC....................................... 20 3 9 0.33 3 3 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................AGCTTCGGTTCGAGGGCGGCG............................. 21 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................AATGACAGCCGTAACAAATTC................................................................................................................................................................................................. 21 3 4 0.25 1 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................ACACGCACACGGCATCCCGCC................................................................................................................................................................ 21 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................ACTGGAGAGCTTGAGTTCG...................................... 19 3 20 0.25 5 5 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................TCACGGGCTCGTTCTGTGTA....................................................................................................................................... 20 3 6 0.17 1 0 0 0 0 0 0 0 0 0 1
................................................................................................................TTGCCCAGCCGAGTGACGGCC............................................................................................................................................................................................................ 21 3 6 0.17 1 0 0 1 0 0 0 0 0 0 0
..................................TGCCGGTAGTTCAGCGGTA............................................................................................................................................................................................................................................................................................ 19 3 8 0.13 1 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................AATGAAAACAACGAAATCAACC........................................................................... 22 3 8 0.13 1 0 0 0 0 0 0 0 0 1 0
..................................................................................................................................................................................................................................................................AACGCCTCCGCCGGCACGTC........................................................... 20 3 9 0.11 1 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................CTGGAGAGCTTGAGTTCGA..................................... 19 3 20 0.10 2 2 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................CACACACACACACAACAT...................................................................................................................................................................... 18 0 19 0.05 1 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................AAATGTAGAGCTTCAGTTTCC..................................... 21 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................CTGTTCGAGGGCGGCGCTT.......................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

ACGGGCGGCACCTCTTCGGGATACAAACGCTCTAACGGCTGACAAGTCGCCATTCAACATCCGGAATTTACGACGTCGTACAGCGGTCGAGATCGTGTGGGGAGAACTCTGGAATGGGTCGGCTTACTGTCGGCATTGTCTGTGTGTGTGTGTGTGTGTGTGTGTGTTGTAGGGCGGAGTGGAGTGGCCGAGAAAGACAAATGAAAGAAAAGACATATGACATATATTACGAGACATGTTTTAGTTTAGTTGGTTTAGTTGGGGAGGCGGGCGGGCAGGTTTACATCTCGAAGTCAAGCTTCCGCCGCGACGTGCCGGTACAAGCGTATGTGCGAAA
*****************************************************************************************************.((((..........((((........(((.(((.((..((((....................................................)))))).))).)))........))))((((((...)))))).))))....******************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 V112
male body		 SRR902011
testis
 GSM444067
head
 GSM343916
embryo
 M062
head
 M059
embryo
...................................................................................CGGTCGAGATCGTGTGGGGAG......................................................................................................................................................................................................................................... 21 0 1 4.00 4 1 1 2 0 0 0 0
..............................................................................................GTGTGGGGAGAACTCTGGAA............................................................................................................................................................................................................................... 20 0 1 3.00 3 1 2 0 0 0 0 0
...........................CGCTCTAACGGCTGACAAGTC................................................................................................................................................................................................................................................................................................. 21 0 1 3.00 3 2 0 1 0 0 0 0
.......................................................................................................................................................................................GTGGCCGAGAAAGACAAATGA..................................................................................................................................... 21 0 1 3.00 3 0 0 3 0 0 0 0
...................................................................................CGGTCGAGATCGTGTGGGGA.......................................................................................................................................................................................................................................... 20 0 1 2.00 2 1 0 1 0 0 0 0
.........................................................................CGTCGTACAGCGGTCGAGATC................................................................................................................................................................................................................................................... 21 0 1 2.00 2 1 0 0 1 0 0 0
...............................................................................................................................................................................................................................................TTTAGTTTAGTTGGTTTAGTTG............................................................................ 22 0 1 2.00 2 0 0 2 0 0 0 0
.....................................GCTGACAAGTCGCCATTCAAC....................................................................................................................................................................................................................................................................................... 21 0 1 2.00 2 1 1 0 0 0 0 0
........................................................................................................................GGCTTACTGTCGGCATTGTTT.................................................................................................................................................................................................... 21 1 1 2.00 2 2 0 0 0 0 0 0
..............................................................................................................................................................................CGGAGTGGAGTGGCCGAGA................................................................................................................................................ 19 0 1 2.00 2 1 1 0 0 0 0 0
.......................................................................................CGAGATCGTGTGGGGAGAACT..................................................................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0
...............................................................................................................................................................GTGTGTGTTGTAGGGCGGAGT............................................................................................................................................................. 21 0 1 2.00 2 1 1 0 0 0 0 0
......................................................................................................................................................................................................................................GAGACATGTTTTAGTTTAGTT...................................................................................... 21 0 1 2.00 2 0 0 2 0 0 0 0
.......................................TGACAAGTCGCCATTCAACAT..................................................................................................................................................................................................................................................................................... 21 0 1 2.00 2 1 0 0 1 0 0 0
....................................................................................................................................................................................................................................................................................AGGTTTACATCTCGAAGTCAA........................................ 21 0 1 2.00 2 1 0 1 0 0 0 0
.....................................................................................................................................................................................GAGTGGCCGAGAAAGACAAAT....................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0
.........................................................................................AGATCGTGTGGGGAGAACTCT................................................................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0
....................................GGCTGACAAGTCGCCATTCAA........................................................................................................................................................................................................................................................................................ 21 0 1 2.00 2 2 0 0 0 0 0 0
............................................................................CGTACAGCGGTCGAGATCGT................................................................................................................................................................................................................................................. 20 0 1 2.00 2 0 1 1 0 0 0 0
..................................................................................................................................................................................................................................TTACGAGACATGTTTTAGTTT.......................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0
..............................................................................................................GGAATGGGTCGGCTTACTGT............................................................................................................................................................................................................... 20 0 1 2.00 2 0 2 0 0 0 0 0
..............................................................................................................................................................TGTGTGTGTTGTAGGGCGGA............................................................................................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0
....................................................................................................................................................................................GGAGTGGCCGAGAAAGACAAA........................................................................................................................................ 21 0 1 2.00 2 0 0 2 0 0 0 0
...................................................................................................GGGAGAACTCTGGAATGGGT.......................................................................................................................................................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0
..................................................................................................................................................................................TTGGAGTGGCCGAGAAAGACA.......................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0
.....................................................................................................................................................................................................................CATATGACATATATTACGAGA....................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
...............TCGGGATACAAACGCTCTAAC............................................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................CGTGTGGGGAGAACTCTGGAA............................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................................................................................TGTGTTGTAGGGCGGAGTGGA.......................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0
...................................CGGCTGACAAGTCGCCGTTCA......................................................................................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
................................................................................AAGCGGTCGAGATCGTGTG.............................................................................................................................................................................................................................................. 19 1 1 1.00 1 0 1 0 0 0 0 0
................................................................................................................................................................TGTGTGTTGTAGGGCGGAGTG............................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................................ATGTTTTAGTTTAGTTGGTTT................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0
.....................................................................................GTCGAGATCGTGTGGGGAGAA....................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................TTACATCTCGAAGTCAAGCTT.................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
..................................ACGGCTGGCAAGTCGCCGTTC.......................................................................................................................................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................................................................................GTGTTGTAGGGCGGAGTGGA.......................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0
....................................GGCTGACGAGTCGCCATTCAA........................................................................................................................................................................................................................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0 0
...........................TGCTCTAACGGCTGACAAGTC................................................................................................................................................................................................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0
...............................................................................ACAGCGGTCGAGATCGTGTGGG............................................................................................................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................................CCATGTTTTAGTTTAGTTGGTT.................................................................................. 22 1 1 1.00 1 0 0 1 0 0 0 0
.............................................................................................................................................................................GCGGAGTGGAGTGGCCGAGG................................................................................................................................................ 20 1 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................TGAATGGGTCGGCTTACTG................................................................................................................................................................................................................ 19 1 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................TTGAGAACTCTGGAATGGGT.......................................................................................................................................................................................................................... 20 2 1 1.00 1 0 1 0 0 0 0 0
...................................................................................................................................................................................................................................TACGAGACATGTTTTAGTTTA......................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
....................................GGCTGACAAGTCGCCGTTCGA........................................................................................................................................................................................................................................................................................ 21 2 1 1.00 1 0 1 0 0 0 0 0
.................................................................................AGCGGTCGAGATCGTGTGG............................................................................................................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................AACTCTGGAATGGGTCGGCTT.................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................CTGGGGTGGGTCGGCTTACT................................................................................................................................................................................................................. 20 2 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................................ATGGGTCGGCTTACTGTC.............................................................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................................................................................................TGGAGTGGCCGAGAAAGACAA......................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0
...........................................................................................................................................................................GGGCGGAGTGGAGTGGCCGAG................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................GCAGGTTTACATCTCGAAGT........................................... 20 0 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................GGGATGGGTCGGCTTACTGT............................................................................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................TGAGGCGGGCGGGCAGGTT........................................................ 19 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................GGCGCACTCTGGTATGGGTC......................................................................................................................................................................................................................... 20 3 2 1.00 2 2 0 0 0 0 0 0
...........................................................TCCGGAATTTACGACGTCGT.................................................................................................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................GACATATATTACGAGACATGT.................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................................................................................................................................ATATGACATATATTACGAGAC...................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0
...........................................................................................................TCTGGAATGGGTCGGCTTAC.................................................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................................................................................GTGTGTTGTAGGGCGGAGT............................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................................................GTCGGCTTACTGTCGGCATTG....................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
............................GCTCTAACGGCTGACAAGTCG................................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................GCAGGTTTACATCTCGAAGTC.......................................... 21 0 1 1.00 1 0 1 0 0 0 0 0
............................................................................TGTACAGCGGTCGAGATCG.................................................................................................................................................................................................................................................. 19 1 1 1.00 1 1 0 0 0 0 0 0
..................................................................................GCGGTCGAGATCGTGTGGGG........................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0
...................................................ATTCAACATCCGGAATTTAC.......................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................................................................................GGCGGAGTGGAGTGGCCGAGA................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................TATGACATATATTACGAGACA..................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0
.............................................................................................................................................................................................................................................GTTTTAGTTTAGTTGGTTTA................................................................................ 20 0 1 1.00 1 0 0 1 0 0 0 0
.............................................................................................CGTGTGGGGAGAACTCTGGA................................................................................................................................................................................................................................ 20 0 1 1.00 1 0 1 0 0 0 0 0
................................................................................................GTGGGGAGAACTCTGGGATG............................................................................................................................................................................................................................. 20 1 1 1.00 1 0 1 0 0 0 0 0
.................................................................................TGCGGTCGAGATCGTGTGGGG........................................................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 1 0
....................................................................................................................................................................................GGAGTGGCCGAGAAAGACAA......................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0
............................ACTCTAACGGCTGACAAGTC................................................................................................................................................................................................................................................................................................. 20 1 1 1.00 1 0 0 1 0 0 0 0
...........................................................................................................................................................................................................................................................................CGGGCGGGCAGGTTTACATCTCGAAG............................................ 26 0 1 1.00 1 0 0 0 1 0 0 0
.....................................................................................GTCGAGATCGTGTGGGGAGA........................................................................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0
................................................................................................................................................................................GAGTGGAGTGGCCGAGAAAGACAAA........................................................................................................................................ 25 0 1 1.00 1 0 0 1 0 0 0 0
.......................CAAACGCTCTGGCGGCTGACA..................................................................................................................................................................................................................................................................................................... 21 2 1 1.00 1 0 0 0 0 0 1 0
............................................................................CGTACAGCGGTCGAGATCGTG................................................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................GGAGAACTCTGGAATGGGT.......................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0
................................................................................................................................................................................................................................TATTACGAGACATGTTTTAGT............................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0
......................................................................................................................................................................................................................................................................................GTTGACCTCTCGAACTCAAGC...................................... 21 3 3 1.00 3 3 0 0 0 0 0 0
..........................................................................................................................................................................AGGGCGGAGTGGAGTGGCCGA.................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................GTTTACATCTCGAAGTCAAGC...................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................................................................................................................GAAAGACAAATGAAAGAAAAG............................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0
................................................................................CAGCGGTCGAGATCGTGTGG............................................................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 1 0 0 0 0
....................................................................................GGTCGAGATCGTGTGGGGA.......................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0
...................................................................................................................................................................................................................................................................................CAGGTTTACATCTCGAAGTCA......................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................................CGTCGTACAGCGGTCGAGGT.................................................................................................................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................CGTGTGGGGAGAACTCTGGG................................................................................................................................................................................................................................ 20 1 1 1.00 1 0 1 0 0 0 0 0
......................................................................................................................................................................TTGTAGGGCGGAGTGGAGT........................................................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0
.......................AAAACGCTCTAACGGCTGACAAG................................................................................................................................................................................................................................................................................................... 23 1 1 1.00 1 0 0 0 0 1 0 0
................CGGGATACAAACGCTCTAACG............................................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................................................................................TGTTGTAGGGCGGAGTGGAG......................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0
................................................GCCATTCAACATCCGGAATT............................................................................................................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0
...........................................................................................................................................................................GGGCGGAGTGGAGTGGCCGA.................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................................................................................GTGTGTGTTGTAGGGC.................................................................................................................................................................. 16 0 1 1.00 1 0 0 1 0 0 0 0
.........................AACGCTCTGACGGCTGACGAG................................................................................................................................................................................................................................................................................................... 21 2 1 1.00 1 0 0 0 1 0 0 0
...................................TGGCTGACAAGTCGCCGTTCA......................................................................................................................................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0
...........................................................................................................TCTGGGATGGGTCGGCTTGC.................................................................................................................................................................................................................. 20 2 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................................TGGAATGGGTCGGCTTACTGT............................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................GCGGGCAGGTTTACATCTCG............................................... 20 0 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................AGGTTTACATCTCGAAGTCA......................................... 20 0 1 1.00 1 1 0 0 0 0 0 0
.....................TACAAACGCTCTAACGGCTGA....................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
....................................................................................GGTCGAGATCGTGTGGGGAGA........................................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................AGGTTTACGTCTCGAAGTCAA........................................ 21 1 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................................GATGCAAGAAGAGACATATGAC.................................................................................................................... 22 3 1 1.00 1 0 0 0 0 1 0 0
.............................................................CGGAATTTACGACGTCGTGC................................................................................................................................................................................................................................................................ 20 1 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................GGGGAGAACTCTGGAATGGGTC......................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0
.................................................................................................................................................................GTGTGTTGTAGGGCGGAGTC............................................................................................................................................................ 20 1 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................................................................................TGGCCGAGAAAGACAAATGAG.................................................................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0
....................................................................................................................................................................................................................................ACGAGACATGTTTTGGTTTAGTTG..................................................................................... 24 1 1 1.00 1 0 0 0 1 0 0 0
...................................................................................................................................................................................TGGAGTGGCCGAGAAAGACA.......................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0
..................................................................................CCGGTCGAGATCGTGTGGGGA.......................................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................GGCCGAGAAAGACAAATGAA.................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0
.......................................................................................................................................................................................GTGGCCGAGAAAGACAAGTG...................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0
............................................................CCGGAGTTTACGACGTCGTA................................................................................................................................................................................................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0 0
..........................................................................GTCGTACAGCGGTCGAGATC................................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................................................................................TAGCCGAGAAAGACAAATGAA.................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................................................................TGTGTGTGTGTTGTAGGGCG................................................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0
.........................................................................................................................................................................................................................TGACATATATTACGAGACATG................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0
....................................GGCTGACGAGTCGCCGTTCAA........................................................................................................................................................................................................................................................................................ 21 2 1 1.00 1 0 1 0 0 0 0 0
..................................................................................................GGGGAGAACTCTGGAATGG............................................................................................................................................................................................................................ 19 0 1 1.00 1 0 1 0 0 0 0 0
...........................................................TCCGGAATTTACGACGTCGTA................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................................TTTAGTTGGTTTAGTTGGGGA........................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0
...........................................................................................................TCTGGAATGGGTCGGCTTACT................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0
................................................................................................................................................................................................................................................TTAGTTTAGTCGGTTTAGTTG............................................................................ 21 1 1 1.00 1 0 1 0 0 0 0 0
.................................................................................................................................................................................................AAGACAAATGAAAGAAAAGAC........................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0
..................................................CATTCAACATCCGGAATTTAC.......................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................GTTGACCTCTCGAACTCAAG....................................... 20 3 9 0.56 5 5 0 0 0 0 0 0
...........................................................................................................................................................GTGTGTGTGTGTTGTAGG.................................................................................................................................................................... 18 0 2 0.50 1 1 0 0 0 0 0 0
..........................................................................................................................................................TGTGTGTGTGTGTTGTAGGG................................................................................................................................................................... 20 0 2 0.50 1 0 1 0 0 0 0 0
....................................GGCTGGCGAGTCGCCGTTCAA........................................................................................................................................................................................................................................................................................ 21 3 4 0.50 2 1 0 0 1 0 0 0
..........................................................................................................................................................................................................................................................................................................CTTCCGCCGCGACGTGCCGGT.................. 21 0 2 0.50 1 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................GGGAGGCGGGCGGGCAGGT......................................................... 19 0 2 0.50 1 1 0 0 0 0 0 0
...........................................................................................................................................................................................................AAAGGAAAGACATGTGACATA................................................................................................................. 21 2 2 0.50 1 0 0 0 0 1 0 0
...........................CGCTCTGACGGCTGACGAGTC................................................................................................................................................................................................................................................................................................. 21 2 2 0.50 1 1 0 0 0 0 0 0
....................................GGCTGGCAAGTCGCCGTTCA......................................................................................................................................................................................................................................................................................... 20 2 2 0.50 1 0 0 0 1 0 0 0
...........................................................TCCGGGGTTTACGACGTCGT.................................................................................................................................................................................................................................................................. 20 2 3 0.33 1 1 0 0 0 0 0 0
........................................................................................................................................................TTTGTGTGTGTGTGTTGTAG..................................................................................................................................................................... 20 1 6 0.33 2 0 2 0 0 0 0 0
...............................................................................................................................................................................................................................................TTTTGTTTAGGTGGTTTAGTTA............................................................................ 22 3 12 0.33 4 0 0 4 0 0 0 0
........................................................................................................................................................TGTGTGTGTGTGTGTTGTAG..................................................................................................................................................................... 20 0 3 0.33 1 1 0 0 0 0 0 0
................................................................................................................................................................TATGTGTTGGATGGCGGAGT............................................................................................................................................................. 20 3 3 0.33 1 0 0 0 1 0 0 0
.......................................................................................................GGACTCTGGGGTGGGTCGGCTT.................................................................................................................................................................................................................... 22 3 3 0.33 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................TTGACCTCTCGAACTCAAGC...................................... 20 3 13 0.31 4 4 0 0 0 0 0 0
...............................................................................................................................................................................................................................................TTTAGTTTAGGTGGTTTAGTTAT........................................................................... 23 3 7 0.29 2 0 0 2 0 0 0 0
..........................................................................................................................CTTACTGTCGGCATTGTTTAA.................................................................................................................................................................................................. 21 3 5 0.20 1 1 0 0 0 0 0 0
..............................................TCGCCGTTCAACATCCGGGGT.............................................................................................................................................................................................................................................................................. 21 3 5 0.20 1 1 0 0 0 0 0 0
..................................................................................................................TGGGTTAGCTTACTGTCGG............................................................................................................................................................................................................ 19 2 12 0.17 2 1 1 0 0 0 0 0
...........................................................TCCGGGGTTTACGACGTCGTG................................................................................................................................................................................................................................................................. 21 3 8 0.13 1 1 0 0 0 0 0 0
................................................................................................................................................................GATGTGTTGGAGGGCGGAGT............................................................................................................................................................. 20 3 9 0.11 1 0 0 0 1 0 0 0
..............................................................................................GTGTGGGGGGAACTCTGGGGT.............................................................................................................................................................................................................................. 21 3 9 0.11 1 1 0 0 0 0 0 0
..................................................................................................................................................................................................................................................TGTTTAGTGGGTTAAGTTGG........................................................................... 20 3 10 0.10 1 0 1 0 0 0 0 0
...........................................................................................................................................CTGTGTGTGTGTGTGTGT.................................................................................................................................................................................... 18 0 20 0.10 2 1 0 0 0 0 0 1
...........................................................................TCGTACAGCGGTCGCAAGCG.................................................................................................................................................................................................................................................. 20 3 11 0.09 1 1 0 0 0 0 0 0
.......................CAGACGCTCTAACGGCTTA....................................................................................................................................................................................................................................................................................................... 19 2 12 0.08 1 1 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................TCCGCCCCGACCGGCCGGTA................. 20 3 12 0.08 1 1 0 0 0 0 0 0
................CGCGGTACAAACGGTCTAAC............................................................................................................................................................................................................................................................................................................. 20 3 12 0.08 1 1 0 0 0 0 0 0
...............................................................................................................................TGTCGGCGTTGTTTGAGTGTGT............................................................................................................................................................................................ 22 3 12 0.08 1 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................................TTTAGTCGGTTTAGTTTGAGA........................................................................ 21 3 13 0.08 1 1 0 0 0 0 0 0
.......................................................................................................GAACCCTGGACTAGGTCGG....................................................................................................................................................................................................................... 19 3 13 0.08 1 1 0 0 0 0 0 0
........................................................................................................................................................................................................................TTGACTTATATTACGAGATA..................................................................................................... 20 3 17 0.06 1 1 0 0 0 0 0 0
...................................................................................................................................................................................TGGAGTGGCCGAGGGAGGC........................................................................................................................................... 19 3 18 0.06 1 1 0 0 0 0 0 0
....................................................................................................................................................................TGTGGGAGGGCGAAGTGGAG......................................................................................................................................................... 20 3 18 0.06 1 0 1 0 0 0 0 0
........................................................................................................................................................TTTGTGTGTGCGTGTTGTAG..................................................................................................................................................................... 20 2 19 0.05 1 0 1 0 0 0 0 0
.......................................................................................................................................TTGTCTGTGTGTGTGTGTGT...................................................................................................................................................................................... 20 0 20 0.05 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................GACCTCTCGAACTCAAGCT..................................... 19 3 20 0.05 1 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 2:1817118-1817454 + dps_301 TGCCCGCCGTGGA---GAAGCCCTATGTTTGCGAGATTGCCGACTGTTCAGCGGTAAGTTGTAGG------CCTT--AA-ATG----------------------------CTGCAGCATGTCG---------------------------------------------------------CCAG--C-TCT-AGCAC------------------------------------------------ACCCCTCTTGAGACCTTACCCAG---CCGAATGACAGCCGTAACAGACAC--------------------------ACACACACACACACACACAC-ACAACATCC---CGCCTCACCTCACC-----------GGCTC--T--------------------TTCTGTTTACTTTCTTTTCTGTATACTGTATATAATGC-TCT-----------GTACAA-AATCA---------AA-------TC-----AACCAAATCA------------ACCCCT------------CCGCCCGCCCG----T---C---C-AAATGT--AGAGCTTCAGTTCGAAGGCGGCGCTGCACGGCCATGTTCGCATACACGCTTT
droPer2 scaffold_7:1970961-1971291 + TGCCCGCCGTGGA---GAAGCCCTATGTTTGCGAGATTGCCGACTGTTCAGCGGTAAGTTGTAGG------CCTT--AA-ATG----------------------------CTGCAGCATGTCG---------------------------------------------------------CCAG--C-TCT-AGCAC------------------------------------------------ACCCCTCTTGAGACCTTACCCAG---CCGAATGACAGCCGTAACAGACAC--------------------------------ACACACACACACAC-ACAACATCC---CGCCTCACCTCACC-----------GGCTC--T--------------------TTCTGTTTACTTTCTTTTCTGTATACTGTATATAATGC-TCT-----------GTACAA-AATCA---------AA-------TC-----AACCAAATCA------------ACCCCT------------CCGCCCGCCCG----T---C---C-AAATGT--AGAGCTTCAGTTCGAAGGCGGCGCTGCACGGCCATGTTCGCATACACGCTTT
droWil2 scf2_1100000004902:9686319-9686648 + CACCAGCCATAGA---GAAGCCCTATGTATGCGAAATAGCTGATTGTTCGGCGGTAAGTTTTAAT------TA--GAGT-T-------------------------------TTTTGCATGATT--------------------------------------------------------------------------------GCA--------------------------------------------TTTTGAAAACTAACAATT---CCAAAT----------------ATATGTACATGGAACACCTTA-----------------------ACAC-ATAAT--------ACCTTAC--CACTGGCCCATCT----CTC--TCTCTCTCTCTCTCCCATACTCTCCCTTTAATTTCTTTCTTGTATCATACTCATAATGGCATC---------------AA-AAACGAAAAAA---AA---------AAACC---------AAAAATTTT------C--C------------CTGCCTG--------TGTGCAAAAATATTGT--AGAGCTTTACTTCGAAAGCGGCGCTGCACGGTCATGTACGCATACACGCTTA
droVir3 scaffold_13047:713893-714181 - dvi_14936 CTCCAACGGTGGAACAGAAGCCCTACGTCTGCGAGATTGCCGACTGCTCGGCGGTAAGTTATAGT------CTAT--GA-ATG----------------------------CTGCAATATATAG---------------AGTCCGGCATATAACCATAATTAGTCCTGCCAAGCCCC----A----T------AGCACAAG-AACAAG-TC-------------------------------------------------------------------------------------------------------------------------------------------------CTCAA----AACTGA-----CTCACA-----T--------------------TCATTTTTCCTTTCTTTCTTGT-------ACATACTGC-TAATATATCTCCCTGC------------------------------------------------G-------------T------------TTGACTACGCGTCTGTG--A--CCAAACTAT--AGAGCTTCACCTCGAAAGCAGCTCTGCATGGTCATGTTCGCATACACGCTTA
droMoj3 scaffold_6540:4704804-4705094 - TTCCGACGGTGGAGCAGAAGCCCTACGTATGCGAGATTGCCGACTGCTCGGCGGTAAGTAGTG--------TTCAGAG---TG----------------------------CGG----------------------------------------------------------------------------------------------GTAG---AC-CTGTTCAGGTCACGCTACGCTATCCCGATTCCCTGTTGCGCTATT---TAG-----------------------------------------------T-----ACCCACATACACACGCGTCT-ACCAAATAC---CCCCACAACTCACT---------CCGGCTC--A--------------------TT---TTTACTTTCTTTCTTGT-------ACATAATGC-CGC---------------------------------------------------------------------------T------------TTCTCTGC-GTTCCATG--A--CCAAAATGT--AGAGCTTCAGTTCTAAGGCGGCGCTGCATGGTCATGTTCGCATACACGCTTA
droGri2 scaffold_14906:5609429-5609717 + CCCCAGTTGTGGAGCAAAAGCCATATGTCTGCGAGATTGCCGACTGCTCAGCGGTAAGTTATAGT------CTACG-AGTATGT-GTATGAG---------------AATGCTGCGGCATGTTT---------------AGTTCGCCCCACACACACACACACACACACTCAGACAC----A----C------A-C--------------------------------------------------------------------------ACA----------------------------CGC---A---------------------------------A---ACCATGT---CCTCATACCTTAGT---------CGGGTTC--A--------------------TTCTGTTTACTTTCTTTCTTGT-------ACATAATGC-TGA---------------------------------------------------------------------TATC--C------------CCGCCCC---------G--A--TCAAACTGT--AGAGCTTCAGCTCGAAGGCGGCGCTGCACGGTCATGTTCGCATACACGCTTA
droAna3 scaffold_13340:4753506-4753810 + dan_2902 CGCCCCCAATTGA---GAAACCCTACGTGTGCGAGATCCCCGACTGCTCAGCGGTAAGTTTTAGG------TT-TA-AG-ATG----------------------------CGGCAGCATGTCC---------------------------------------------------------TCAG--A-CCG-AGCACGAAGCCACAGCTCT---CT----------------------------------------------------AACC----------------------------CGCGGCCCCCCTCGTCACCCC--------------ACATTC-ACAACACCC---CACCTCACCTCACC-----------GGCTCTCT--------------------TTCCTTTTATTTTCTTT-TTGT-------ACCTAACGC-TCG---------------AAAAATCAAAAACA---AA---------A--------AAACCA------------AAC--C------------CTGCCTGC-------CT--C---C-GAATGT--AGAGCTTCAGTTCGAAAGCGGCACTGCACGGCCATGTCCGCATACACGCTTA
droBip1 scf7180000396359:437033-437334 - CGCCCCCCGTGGA---GAAACCCTATGTGTGCGAGATCCCCGACTGCTCAGCGGTAAGTTTTAGG------CCTT--AG-AAG----------------------------CGGCAGCATGTCC---------------------------------------------------------TCAG--A-CCG-AGCACGAAGCCACAGCTCT---CT----------------------------------------------------AACC----------------------------CGCGACCCCCTTCGTCACCCC--------------ACATTC-GCAACACCC---CACCTCACCTCACC-----------GGCTCTCT--------------------TTCCTTTTATTTTCTTTTTTGT-------ACATAACGC-TCG---------------AA-AATCAAAAACA---AA-----------ACC---------A------------AAC--C------------CTGCCTGC-------CT--C---C-GAATGT--AGAGCTTCAGTTCGAAAGCGGCACTGCACGGCCATGTCCGCATACACGCTTA
droKik1 scf7180000302388:1791114-1791437 + CGCCCGCTGTGGA---GAAGCCCTATGTCTGCGAGATTGCCGATTGCTCAGCGGTAAGTTGAAGTAGTGATCC-TA-AG-AAG----------------------------GGAAAGCATGTCC-----------------TT-G--------------------------------TCCC----AGACCCG-AGCACGAAGTTGCAGCTCT---CCG--------------------------AAACCCCTGTTA-------ACCC--AA-GCTAAAGTCAT--------------------------------------------------------CAC-ACAACGACC---CACCTCACCTCACC-----------GGCTCTCTCTCTTT--------------CTCTGTTTACTCTATTCTCTGT-------ATATAATGC-TCC---------------AA-AA-----------------------AAACC---------AA-AATCATACCAAAATCC------------CTGCCTG--------CG------C-GAATGT--AGAGCTTCAGTTCGAAGGCGGCGCTGCACGGTCATGTACGCATTCACGCTTA
droFic1 scf7180000454106:1891147-1891476 + CACCCGCCGTGGA---GAAGCCCTACGTCTGCGAGATCGCCGACTGTTCAGCGGTAAGTTGCAGG------TTCCT-AG-TTGTAGATGCAG---------------CAG-CAGCAGCATGCCCCAAAGCCC-------------------------------------------------ACAG--C-CCGCAGCACGAA-ACGCAGTTGCCGCCT----------------------------------------------------AACC----------------------------CGAG--T---------------------------------AGCTT-GCCCC---CACCTCACCTCTG--A-----CCTCGGCTC--T--------------------CTCTGTTTACTTTCTTTCTTGT-------ACATAACGC-TCG---------------CA-AATCGCAAACCGCAAACCGCTCGT-AAACC---------A--AATCTTGCCCACC--C------------CCGCCTG--------AA--C---CGAACTGT--AGAGCTTCAGCTCGAAAGCAGCGCTGCACGGCCATGTCCGCATTCACGCTTA
droEle1 scf7180000491194:466026-466323 - CTCCAGCGGTGGA---GAAGCCCTATGTCTGCGAGATTGCGGACTGTTCAGCGGTAAGTTTTAGG------ATCTC-AG-CAG------------------------CAG-CAGCAGCATGCCC---------------CAAA-----------------------------------------G--C-CCT-AGCATGAA-TTGCAGATCCAGCCC----------------------------------------------------AAGC----------------------------CCAA--T---------------------------------TGCTAAGGCCCCACCACCTCACCTCACT-----------GGCTC--T--------------------TTCTGTTTACTTTCTTTCTTGT-------ACATAACGC-TCG---------------AA-AATCA---------------------AACCAAA---------AAATTTACCAATC--C------------CTGCCTG--------CGCGC---C-AAATGTATAGAGCTTCAGTTCGAAAGCGGCGCTGCACGGCCACGTTCGCATACACGCTTA
droRho1 scf7180000779488:513193-513482 - CACCGGCGGTGGA---GAAGCCCTATGTGTGCGAGATCGCAGACTGTTCAGCGGTAAGTCTTAGG------TTCTA-AG-CTG----------------------------CAGCAGCATGCTA----------------TTT-C--------------------------------CCCC----AAACCCG-AGCACGAA-TTGCAGATCC---CC----------------------------------------------------AACC----------------------------CGA---A---------------------------------CGCCAAGGCCC---CACCTCACCTCACT-----------GGCTC--T--------------------TTCTGTTTTCTTTCTTTC-TGT-------ACATAACGC-TCG---------------AA-TATAA---------------------AACC---------GA-AATCTGACCAATC--C------------CCGCCTG--------CG--C---C-AAATGTATAGAGCTTCAGTTCGAAAGCGGCGCTGCACGGCCATGTTCGCATACACGCTTA
droBia1 scf7180000302402:4589669-4589928 + CTCCGGCTGTGGA---GAAGCCCTACGTCTGCGAGATCGCCGATTGCTCAGCGGTAAGTGGTAGT------AAGG--AA-ATG------------------------CAG-CAGCAGCATGACA---------------CCAT-G--------------------------------ACC---------CCA-AGCACGAA-ATGCGGTTAA---CC------------------------------------------------------------------------------------CT-----------------------------------------CCATACCC---AACCTCACC---------------------------------------------------CACCCTCTATCTTGT-------ACATAACTC-TCG---------------AA-AATCA---------------------AACC---------GA-AATCTTTCCAATC--C------------CCGCCTG--------CG--C---C-GAATGT--AGAGCTTCAGTTCGAAAGCAGCGCTGCACGGCCATGTCCGCATACACGCTTA
droTak1 scf7180000414118:24751-25020 - CTCCCGCTGTGGA---GAAGCCCTATGTCTGCGAGATCGCCGACTGCTCAGCGGTAAGTTGTAGG------TTTTA-AGTATC------------------------CAG-GATCAGCATGTCC---------------C------------------------------------------CGAAG------TGCACGAA-ATGCAGTTCC---CT--------------------------------------------------A-AAC-------------------------------------------------------------------------------------CCTCCCTCGGTT-----------AGCCC--C--------------------TTCTGTTTACTTTCTATCTTGT-------ACATAACGC-TCG---------------AA-AATCAAA--------------------ACC---------AA-ACTCTTTCCAATCCCC------------CCGCCTG--------CG--C---C-GAATGT--AGAGCTTCAGTTCGAAAGCAGCGCTGCACGGTCATGTCCGCATACACGCTTA
droEug1 scf7180000407136:402833-403119 + CTCCCGCTGTGGA---GAAGCCCTATGTCTGCGAGATCGCCGACTGTTCAGCGGTAAGTTGTAGG------CTCTA-AG-ATGCA--------------------------CTGCAGCATGTCC---------------CCC---------------------------------------TTAG--C-CCG-AGCACGAA-TGGCAGCTCC---CC---------------------------------------------------CAAGC----------------------------CGA---A---------------------------------GGCCAACATCC---CACCTTACCTCACT-----------GGCTC--T--------------------TTCTGTTTACTTTCTTTCTTGT-------ACATAACGC-TCA---------------AA-A-------------------------ATCCAAA---------AATCTTGCCAATCCCC------------TCGCCTG--------CG--C---C-GAATGT--AGAGCTTCAGTTCGAAAGCGGCGCTGCACGGCCATGTCCGCATACACGCTTA
dm3 chr3R:5294077-5294400 - CTCCCGCGGTGGA---GAAGCCCTATGTCTGCGAGATTGCCGACTGTTCAGCGGTAAGTTCTAGG------CTCTC-AG-ATGCAGCAGCAGCAGCAGCAGCAGCAGCAG-CAGCAGCATGGCC---------------CCTT-G--------------------------------CCCC----AA------TGCACGTA-CTGCAGCTCC---CC--------------------------------------------------AGAAAC----------------------------CAA---A---------------------------------CGCTAACGCCC---CACCTCACCTCACT-----------GGCTC--T--------------------TTCTGTTTACTCTCTTTCCTGT-------ACATAACGC-TCG---------------AA-TATCACAATCA---AA---------AATCCAAA---------TATCTTGCCCATC--C------------CCGCCTG--------CG--C---C-GAATGT--AGAGCTTCAGTTCGAAGGCGGCACTGCACGGCCATGTCCGCATACACGCTTA
droSim2 3r:15732679-15732987 + dsi_22834 CTCCCGCGGTGGA---GAAGCCCTATGTCTGCGAGATCGCCGACTGCTCAGCGGTAAGTTCTAGG------CTCTC-AG-ATGCTGCAGCAG---------------CAG-CAGCAGCATGCCC---------------CCTT-G--------------------------------CCCC----AA------TGCACGTA-CTGCAGCTCC---CC--------------------------------------------------AGAAAC----------------------------CGA---A---------------------------------CGCTAACGCCC---CACCTCACCTCACT-----------GGCTC--T--------------------TTCTGTTTACTCTCTTTCCTGT-------ACATAACGC-TCG---------------AA-TGTCACAATCA---AA---------AATCCAAA---------TATCTTGCCCATC--C------------CCGCCTG--------CG--C---C-GAATGT--AGAGCTTCAGTTCGAAGGCGGCACTGCACGGCCATGTCCGCATACACGCTTA
droSec2 scaffold_0:16602142-16602448 + CTCCCGCGGTGGA---GAAGCCCTATGTCTGCGAGATCGCCGACTGCTCAGCGGTAAGTTCTAGG------CTCTC-AG-ATGCAGCAGCAG---------------CAG-CAGCAGCATGCCC---------------CCTT-G--------------------------------CCCC----AA------TGCACGTA-CTGCAGCGCC---CC--------------------------------------------------AGAAAC----------------------------CGA---A---------------------------------CGCTAACGCCC---CACCTCACCTCACT-----------GGCTC--T--------------------TTCTTTTTACTCTCTTTCCTGT-------ACATAACGC-TCG---------------AA-TGTCACAATCA---AA---------AATCCAAA---------TATCTTGCCC--C--C------------CCGCCTG--------CG--C---C-GAATGT--AGAGCTTCAGTTCGAAGGCGGCACTGCACGGCCATGTCCGCATACACGCTTA
droYak3 3R:9342829-9343166 - dya_986 CACCCGCGGTGGA---GAAGCCCTATGTCTGCGAGATCGCCGACTGTTCAGCGGTAAGTTCTAGG------CTCTC-AG-ATGCAGCAGC--CAGCAGCAGCAGCAACAG-CAGCCGCATGCCC---------------CACT-G-------C------------------------CCCC----AA------TGCACGTA-CTGCAGCTCC---CCC-------------------------------------------------AACAAC----------------------------CGA---A---------------------------------CGCTAACGCCC---CACCTCACCTCACT-----------GGCTC--T--------------------TTCTGTTTACTCTCTTTCCTGT-------ACATAACGC-TCG---------------AA-TGTCAAAATCA---AA-------TCAATCCACA---------TATCTTGCCCATT--CCCGCCTGCGCCTTCGCCTG--------CG--C---C-GAATGT--AGAGCTTCAGTTCGAAGGCGGCGCTGCACGGCCATGTCCGCATACACGCTTA
droEre2 scaffold_4770:16309596-16309890 + CACCCGCGGTGGA---GAAGCCCTATGTCTGCGAGATCGCCGACTGTTCCGCGGTAAGTTCTAGG------CTCTC-AT-GTG------------------------CAC-CAGCAGCATGCCC-ATTGCCCTCTGCCCCCCT-G--------------------------------CCCC----AA------TGCACGTG-CTGCAGCTCC---CA---------------------------------------------------AAAA-------------------------------------------------------------------------------------CCGCACCTCACT-----------GGCTC--T--------------------TTCTGTTTACTCTCTTTCCTGT-------ACATAACGC-TCG---------------AA-TGTCACAATCA---AA---------TATCCAAA---------TATCTTGCCCATT--C------------CCGCCTG--------CG--C---C-GAATGT--AGAGCTTCAGTTCGAAGGCGGCGCTGCACGGCCATGTCCGCATACACGCTTA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
TGCCCGCCGTGGA---GAAGCCCTATGTTTGCGAGATTGCCGACTGTTCAGCGGTAAGTTGTAGG------CCTT--AA-ATG----------------------------CTGCAGCATGTCG---------------------------------------------------------CCAG--C-TCT-AGCAC------------------------------------------------ACCCCTCTTGAGACCTTACCCAG---CCGAATGACAGCCGTAACAGACAC--------------------------ACACACACACACACACACAC-ACAACATCC---CGCCTCACCTCACC-----------GGCTC--T--------------------TTCTGTTTACTTTCTTTTCTGTATACTGTATATAATGC-TCT-----------GTACAA-AATCA---------AA-------TC-----AACCAAATCA------------ACCCCT------------CCGCCCGCCCG----T---C---C-AAATGT--AGAGCTTCAGTTCGAAGGCGGCGCTGCACGGCCATGTTCGCATACACGCTTTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................CGAGATTGCCGACTGTTCAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21114.00141601001023
..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTGTATATAATGC-TCT-----------GT................................................................................................................................................................2115.0050100000040
...............................CGAGATTGCCGACTGTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2015.0050100000220
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---C---C-AAATGT--AGAGCTTCAGTT........................................2114.0040100000030
...............................................................................................................................................................................................T-AGCAC------------------------------------------------ACCCCTCTTGAGACC..........................................................................................................................................................................................................................................................................................................................................................................2113.0030300000000
..........................................................................T--AA-ATG----------------------------CTGCAGCATGTCG---------------------------------------------------------CC........................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030210000000
...................................................................................................................AGCATGTCG---------------------------------------------------------CCAG--C-TCT-AGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................2013.0030300000000
.........................TGTTTGCGAGATTGCCGACTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030300000000
.............................................................................AA-ATG----------------------------CTGCAGCATGTCG---------------------------------------------------------CC........................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.0030200001000
.........................................................................TT--AA-ATG----------------------------CTGCAGCATGTCG---------------------------------------------------------C.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020100001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGT--AGAGCTTCAGTTCGAAGGCGG...............................2612.0020000000020
..................................................................................................................................................................................................................................................................................................................................................ACAC-ACAACATCC---CGCCTCA.....................................................................................................................................................................................................................................................................2012.0020200000000
.......................TATGTTTGCGAGATTGCCGAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020100010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TACTGTATATAATGC-TCT-----------GTA...............................................................................................................................................................2112.0020100000010
.........................................................................................................................TCG---------------------------------------------------------CCAG--C-TCT-AGCAC------------------------------------------------ACCC.....................................................................................................................................................................................................................................................................................................................................................................................2012.0020100100000
...............................CGAGATTGCCGACTGTTCAGTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000020
.....................................................................................................................................................................................................................................................................TTACCCAG---CCGAATGACAGCC..................................................................................................................................................................................................................................................................................................................................................2112.0020200000000
...............................................................................................................................................................................................T-AGCAC------------------------------------------------ACCCCTCTTGAGAC...........................................................................................................................................................................................................................................................................................................................................................................2012.0020100000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................TTTACTTTCTTTTCTGTATAC.............................................................................................................................................................................................2112.0020000000020
.............................TGCGAGATTGCCGACTGTTCCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000020
...............................................TCAGCGGTAAGTTGTAGG------C.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020100001000
...........................................................TGTAGG------CCTT--AA-ATG----------------------------CTGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000020
...........................TTTGCGAGATTGCCGACTGTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020200000000
.............................TGCGAGATTGCCGACTGTTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020100000010
...................................................................................................................................................................................................................................................................................................................................................................CGCCTCACCTCACC-----------GGCTC--T--------------------T......................................................................................................................................................................................................................2111.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................TTACTTTCTTTTCTGTATACT............................................................................................................................................................................................2111.0010100000000
................................................................................ATG----------------------------CTGCAGCATGTCG---------------------------------------------------------CCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA------------ACCCCT------------CCGCCCGCCCG----T---C---..............................................................2111.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTATACTGTATATAATGC-................................................................................................................................................................................2111.0010000000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGT--AGAGCTTCAGTTCGAA....................................2111.0010000000010
..................................GATTGCCGACTGTTCAGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT--AGAGCTTCAGTTCGAAGGC.................................2121.0020200000000
.....................................................GTAAGTTGTAGG------CCTT--AA-ATG----------------------------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTCAGTTCGAAGGCGGCG.............................2121.0020200000000
............................TTGCGAGATTGCCGACTGTTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000010
...............................................TCAGCGGTAAGTTGTAGG------CC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATAATGC-TCT-----------GTACAA-AA.........................................................................................................................................................2111.0010000000010
.....................................................................................................................................................................................................................................................................................................................................................C-ACAACATCC---CGCCTCACCTC.................................................................................................................................................................................................................................................................2111.0010100000000
.........................................................GTTGTAGG------CCTT--AA-ATG----------------------------CTGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
..............................GCGAGATTGCCGACTGTTCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000000
...........................................................................................................................................................................................................................................................................................................................................................................CTCACC-----------GGCTC--T--------------------TTCTGTTTA..............................................................................................................................................................................................................2111.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................TTACTTTCTTTTCTGTATACC............................................................................................................................................................................................2111.0010010000000
.............................................................................................................................................................................................................................................................................................................................................................TCC---CGCCTCACCTCACC-----------GGC................................................................................................................................................................................................................................................2011.0010100000000
........................................................................CTT--AA-ATG----------------------------CTGCAGCATGTCG---------------------------------------------------------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..........................................................................T--AA-ATG----------------------------CTGCAGCATGTCG---------------------------------------------------------C.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCAAATCA------------ACCCCT------------CCGCCGA..............................................................................2311.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TATACTGTATATAATGC-TCT-----------..................................................................................................................................................................2011.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCA------------ACCCCT------------CCGCCCGCCCG----T---..................................................................2111.0010100000000
.......................................................................CCTT--AA-ATG----------------------------CTGCAGCATGTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..........................GTTTGCGAGATTGCCGACTGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCA------------ACCCCT------------CCGCCCGC.............................................................................1811.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTCGAAGGCGGCGCTGCA........................2021.0020100001000
......................................................................................................................................................................................................................................................................TACCCAG---CCGAATGACAGCCG.................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.......................................................................................................................................................................................AG--C-TCT-AGCAC------------------------------------------------ACCCCTCTTG...............................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................TCC---CGCCTCACCTCACC-----------GGCT...............................................................................................................................................................................................................................................2111.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-----AACCAAATCA------------ACCCCT------------CCGC.................................................................................2111.0010100000000
..............................................................................................................................................................................................................................................................TGAGACCTTACCCAG---CCGA...........................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
...............................................................................................................................................................................................T-AGCAC------------------------------------------------ACCCCTCTTGAGACCT.........................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG----T---C---C-AAATGT--AGAGCTTCAG..........................................2111.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAATCA------------ACCCCT------------CCGCCCG..............................................................................2111.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTATACTGTATATAATGC-................................................................................................................................................................................2011.0010100000000
......................CTATGTTTGCGAGATTGCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT--AGAGCTTCAGTTCGAAGGCGGC..............................2511.0010000000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCA------------ACCCCT------------CCGCCCGCCC...........................................................................2111.0010100000000
.......................TATGTTTGCGAGATTGCCGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000001000
.........................TGTTTGCGAGATTGCCGACT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------AA-------TC-----AACCAAATCA------------ACCCCT------------.....................................................................................2111.0010100000000
...........................................................................................................................................................................................................................................................TCTTGAGACCTTACCCAG---CC.............................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.......................................................................................................................TGTCG---------------------------------------------------------CCAG--C-TCT-AGCAC------------------------------------------------ACCC.....................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
.......................................................................................................................TGTCG---------------------------------------------------------CCAG--C-TCT-AGCAC------------------------------------------------AC.......................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAGGCGGCGCTGCACGGC....................2021.0020100000001
................................................................................................................TGCAGCATGTCG---------------------------------------------------------CCAG--C-TCT-..............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTTCTTTTCTGTATACTG...........................................................................................................................................................................................2011.0010000000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---------AA-------TC-----AACCAAATCA------------ACCCC..................................................................................................2111.0010100000000
.............................................................................................................................................................................................TCT-AGCAC------------------------------------------------ACCCCTCTTGAGA............................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCCG----T---C---C-AAATGT--AGAGCT..............................................2111.0010100000000
............................................TGTTCAGCGGTAAGTTGTAGG------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...............................CGAGATTGCCGACTGTTCAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000010
.........................................................................................................................................................................................................................................................................................................................................................AACATCC---CGCCTCACCTCACC-----------...................................................................................................................................................................................................................................................2111.0010100000000
..............................................................................................................................................................................................................................................................................................................................................ACACACAC-ACAACATCC---CGCC........................................................................................................................................................................................................................................................................2111.0010100000000
.............................................................................................................................................................................................................................................................................................................................................CACACACAC-ACAACATCC---CGC.........................................................................................................................................................................................................................................................................2111.0010100000000
.............................TGCGAGATTGCCGACTGTTTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000010
.................................AGATTGCCGACTGTTCAGCGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.........................................................................TT--AA-ATG----------------------------CTGCAGCATGTCG---------------------------------------------------------CC........................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
....................................................................................................................................................................................................................................................................CTTACCCAG---CCGAATGACAG....................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...........................................CTGTTCAGCGGTAAGTTGTAGA------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000010
.............................................GTTCAGCGGTAAGTTGTAGG------C.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TATACTGTATATAATGC-TCT-----------G.................................................................................................................................................................2111.0010100000000
..................................................................................................................................................................................................GCAC------------------------------------------------ACCCCTCTTGAGACCTT........................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATACTGTATATAATGC-TC..............................................................................................................................................................................2111.0010000000010
.........................................................................................................................TCG---------------------------------------------------------CCAG--C-TCT-AGCAC------------------------------------------------ACCCC....................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...................................ATTGCCGACTGTTCAGCGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010000
........................ATGTTTGCGAGATTGCCGAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTCTTTTCTGTATACTGTA.........................................................................................................................................................................................2111.0010010000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAGTTCGAAGGCGGCGCT...........................2020.5011000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTCGAAGGCGGCGCTGCAC.......................2120.5010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT--AGAGCTTCAGTTCGAAGG..................................2020.5010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTCAGTTCGAAGGCGG...............................1920.5010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAAGGCGGCGCTGCACGGC....................2120.5010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--AGAGCTTCAGTTCGAAGGCGGCG.............................2420.5010000000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAGTTCGAAGGCGGCGCTT..........................2120.5010000001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGCGGCGCTGCACGG.....................1820.5010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCGGCGCTGCACGGCA...................1820.5010000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCAGTTCGAAGGCGGCGC............................2020.5010100000000
...........................................................................................................................................................................................................................................................................................................................................CACACACACAC-ACAACAT.................................................................................................................................................................................................................................................................................18190.0510010000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGT--AGAGCTTCAGTTTCC.....................................21200.0510000001000
droPer2
TGCCCGCCGTGGA---GAAGCCCTATGTTTGCGAGATTGCCGACTGTTCAGCGGTAAGTTGTAGG------CCTT--AA-ATG----------------------------CTGCAGCATGTCG---------------------------------------------------------CCAG--C-TCT-AGCAC------------------------------------------------ACCCCTCTTGAGACCTTACCCAG---CCGAATGACAGCCGTAACAGACAC--------------------------------ACACACACACACAC-ACAACATCC---CGCCTCACCTCACC-----------GGCTC--T--------------------TTCTGTTTACTTTCTTTTCTGTATACTGTATATAATGC-TCT-----------GTACAA-AATCA---------AA-------TC-----AACCAAATCA------------ACCCCT------------CCGCCCGCCCG----T---C---C-AAATGT--AGAGCTTCAGTTCGAAGGCGGCGCTGCACGGCCATGTTCGCATACACGCTTTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
CACCAGCCATAGA---GAAGCCCTATGTATGCGAAATAGCTGATTGTTCGGCGGTAAGTTTTAAT------TA--GAGT-T-------------------------------TTTTGCATGATT--------------------------------------------------------------------------------GCA--------------------------------------------TTTTGAAAACTAACAATT---CCAAAT----------------ATATGTACATGGAACACCTTA-----------------------ACAC-ATAAT--------ACCTTAC--CACTGGCCCATCT----CTC--TCTCTCTCTCTCTCCCATACTCTCCCTTTAATTTCTTTCTTGTATCATACTCATAATGGCATC---------------AA-AAACGAAAAAA---AA---------AAACC---------AAAAATTTT------C--C------------CTGCCTG--------TGTGCAAAAATATTGT--AGAGCTTTACTTCGAAAGCGGCGCTGCACGGTCATGTACGCATACACGCTTASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........................................................................................................................................................................................................................................................................CAATT---CCAAAT----------------ATATGTACATGG.............................................................................................................................................................................................................................................................................................................................2311.00100010
droVir3
CTCCAACGGTGGAACAGAAGCCCTACGTCTGCGAGATTGCCGACTGCTCGGCGGTAAGTTATAGT------CTAT--GA-ATG----------------------------CTGCAATATATAG---------------AGTCCGGCATATAACCATAATTAGTCCTGCCAAGCCCC----A----T------AGCACAAG-AACAAG-TC-------------------------------------------------------------------------------------------------------------------------------------------------CTCAA----AACTGA-----CTCACA-----T--------------------TCATTTTTCCTTTCTTTCTTGT-------ACATACTGC-TAATATATCTCCCTGC------------------------------------------------G-------------T------------TTGACTACGCGTCTGTG--A--CCAAACTAT--AGAGCTTCACCTCGAAAGCAGCTCTGCATGGTCATGTTCGCATACACGCTTASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................CTACGTCTGCGAGATTGCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000100000000000000000000000000000000000000000000000000000000000
droMoj3
TTCCGACGGTGGAGCAGAAGCCCTACGTATGCGAGATTGCCGACTGCTCGGCGGTAAGTAGTG--------TTCAGAG---TG----------------------------CGG----------------------------------------------------------------------------------------------GTAG---AC-CTGTTCAGGTCACGCTACGCTATCCCGATTCCCTGTTGCGCTATT---TAG-----------------------------------------------T-----ACCCACATACACACGCGTCT-ACCAAATAC---CCCCACAACTCACT---------CCGGCTC--A--------------------TT---TTTACTTTCTTTCTTGT-------ACATAATGC-CGC---------------------------------------------------------------------------T------------TTCTCTGC-GTTCCATG--A--CCAAAATGT--AGAGCTTCAGTTCTAAGGCGGCGCTGCATGGTCATGTTCGCATACACGCTTASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
CCCCAGTTGTGGAGCAAAAGCCATATGTCTGCGAGATTGCCGACTGCTCAGCGGTAAGTTATAGT------CTACG-AGTATGT-GTATGAG---------------AATGCTGCGGCATGTTT---------------AGTTCGCCCCACACACACACACACACACACTCAGACAC----A----C------A-C--------------------------------------------------------------------------ACA----------------------------CGC---A---------------------------------A---ACCATGT---CCTCATACCTTAGT---------CGGGTTC--A--------------------TTCTGTTTACTTTCTTTCTTGT-------ACATAATGC-TGA---------------------------------------------------------------------TATC--C------------CCGCCCC---------G--A--TCAAACTGT--AGAGCTTCAGCTCGAAGGCGGCGCTGCACGGTCATGTTCGCATACACGCTTASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
CGCCCCCAATTGA---GAAACCCTACGTGTGCGAGATCCCCGACTGCTCAGCGGTAAGTTTTAGG------TT-TA-AG-ATG----------------------------CGGCAGCATGTCC---------------------------------------------------------TCAG--A-CCG-AGCACGAAGCCACAGCTCT---CT----------------------------------------------------AACC----------------------------CGCGGCCCCCCTCGTCACCCC--------------ACATTC-ACAACACCC---CACCTCACCTCACC-----------GGCTCTCT--------------------TTCCTTTTATTTTCTTT-TTGT-------ACCTAACGC-TCG---------------AAAAATCAAAAACA---AA---------A--------AAACCA------------AAC--C------------CTGCCTGC-------CT--C---C-GAATGT--AGAGCTTCAGTTCGAAAGCGGCACTGCACGGCCATGTCCGCATACACGCTTASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................AACCCTACGTGTGCGAGATCCCCGACT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.002000002
...........................TGTGCGAGATCCCCGACTGCTCAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAAAAACA---AA---------A--------AAACC....................................................................................................................1911.001010000
droBip1
CGCCCCCCGTGGA---GAAACCCTATGTGTGCGAGATCCCCGACTGCTCAGCGGTAAGTTTTAGG------CCTT--AG-AAG----------------------------CGGCAGCATGTCC---------------------------------------------------------TCAG--A-CCG-AGCACGAAGCCACAGCTCT---CT----------------------------------------------------AACC----------------------------CGCGACCCCCTTCGTCACCCC--------------ACATTC-GCAACACCC---CACCTCACCTCACC-----------GGCTCTCT--------------------TTCCTTTTATTTTCTTTTTTGT-------ACATAACGC-TCG---------------AA-AATCAAAAACA---AA-----------ACC---------A------------AAC--C------------CTGCCTGC-------CT--C---C-GAATGT--AGAGCTTCAGTTCGAAAGCGGCACTGCACGGCCATGTCCGCATACACGCTTASizeHit CountTotal NormTotal
No Reads
droKik1
CGCCCGCTGTGGA---GAAGCCCTATGTCTGCGAGATTGCCGATTGCTCAGCGGTAAGTTGAAGTAGTGATCC-TA-AG-AAG----------------------------GGAAAGCATGTCC-----------------TT-G--------------------------------TCCC----AGACCCG-AGCACGAAGTTGCAGCTCT---CCG--------------------------AAACCCCTGTTA-------ACCC--AA-GCTAAAGTCAT--------------------------------------------------------CAC-ACAACGACC---CACCTCACCTCACC-----------GGCTCTCTCTCTTT--------------CTCTGTTTACTCTATTCTCTGT-------ATATAATGC-TCC---------------AA-AA-----------------------AAACC---------AA-AATCATACCAAAATCC------------CTGCCTG--------CG------C-GAATGT--AGAGCTTCAGTTCGAAGGCGGCGCTGCACGGTCATGTACGCATTCACGCTTASizeHit CountTotal NormTotal
No Reads
droFic1
CACCCGCCGTGGA---GAAGCCCTACGTCTGCGAGATCGCCGACTGTTCAGCGGTAAGTTGCAGG------TTCCT-AG-TTGTAGATGCAG---------------CAG-CAGCAGCATGCCCCAAAGCCC-------------------------------------------------ACAG--C-CCGCAGCACGAA-ACGCAGTTGCCGCCT----------------------------------------------------AACC----------------------------CGAG--T---------------------------------AGCTT-GCCCC---CACCTCACCTCTG--A-----CCTCGGCTC--T--------------------CTCTGTTTACTTTCTTTCTTGT-------ACATAACGC-TCG---------------CA-AATCGCAAACCGCAAACCGCTCGT-AAACC---------A--AATCTTGCCCACC--C------------CCGCCTG--------AA--C---CGAACTGT--AGAGCTTCAGCTCGAAAGCAGCGCTGCACGGCCATGTCCGCATTCACGCTTASizeHit CountTotal NormTotal
No Reads
droEle1
CTCCAGCGGTGGA---GAAGCCCTATGTCTGCGAGATTGCGGACTGTTCAGCGGTAAGTTTTAGG------ATCTC-AG-CAG------------------------CAG-CAGCAGCATGCCC---------------CAAA-----------------------------------------G--C-CCT-AGCATGAA-TTGCAGATCCAGCCC----------------------------------------------------AAGC----------------------------CCAA--T---------------------------------TGCTAAGGCCCCACCACCTCACCTCACT-----------GGCTC--T--------------------TTCTGTTTACTTTCTTTCTTGT-------ACATAACGC-TCG---------------AA-AATCA---------------------AACCAAA---------AAATTTACCAATC--C------------CTGCCTG--------CGCGC---C-AAATGTATAGAGCTTCAGTTCGAAAGCGGCGCTGCACGGCCACGTTCGCATACACGCTTASizeHit CountTotal NormTotal
No Reads
droRho1
CACCGGCGGTGGA---GAAGCCCTATGTGTGCGAGATCGCAGACTGTTCAGCGGTAAGTCTTAGG------TTCTA-AG-CTG----------------------------CAGCAGCATGCTA----------------TTT-C--------------------------------CCCC----AAACCCG-AGCACGAA-TTGCAGATCC---CC----------------------------------------------------AACC----------------------------CGA---A---------------------------------CGCCAAGGCCC---CACCTCACCTCACT-----------GGCTC--T--------------------TTCTGTTTTCTTTCTTTC-TGT-------ACATAACGC-TCG---------------AA-TATAA---------------------AACC---------GA-AATCTGACCAATC--C------------CCGCCTG--------CG--C---C-AAATGTATAGAGCTTCAGTTCGAAAGCGGCGCTGCACGGCCATGTTCGCATACACGCTTASizeHit CountTotal NormTotal
No Reads
droBia1
CTCCGGCTGTGGA---GAAGCCCTACGTCTGCGAGATCGCCGATTGCTCAGCGGTAAGTGGTAGT------AAGG--AA-ATG------------------------CAG-CAGCAGCATGACA---------------CCAT-G--------------------------------ACC---------CCA-AGCACGAA-ATGCGGTTAA---CC------------------------------------------------------------------------------------CT-----------------------------------------CCATACCC---AACCTCACC---------------------------------------------------CACCCTCTATCTTGT-------ACATAACTC-TCG---------------AA-AATCA---------------------AACC---------GA-AATCTTTCCAATC--C------------CCGCCTG--------CG--C---C-GAATGT--AGAGCTTCAGTTCGAAAGCAGCGCTGCACGGCCATGTCCGCATACACGCTTASizeHit CountTotal NormTotal
No Reads
droTak1
CTCCCGCTGTGGA---GAAGCCCTATGTCTGCGAGATCGCCGACTGCTCAGCGGTAAGTTGTAGG------TTTTA-AGTATC------------------------CAG-GATCAGCATGTCC---------------C------------------------------------------CGAAG------TGCACGAA-ATGCAGTTCC---CT--------------------------------------------------A-AAC-------------------------------------------------------------------------------------CCTCCCTCGGTT-----------AGCCC--C--------------------TTCTGTTTACTTTCTATCTTGT-------ACATAACGC-TCG---------------AA-AATCAAA--------------------ACC---------AA-ACTCTTTCCAATCCCC------------CCGCCTG--------CG--C---C-GAATGT--AGAGCTTCAGTTCGAAAGCAGCGCTGCACGGTCATGTCCGCATACACGCTTASizeHit CountTotal NormTotal
No Reads
droEug1
CTCCCGCTGTGGA---GAAGCCCTATGTCTGCGAGATCGCCGACTGTTCAGCGGTAAGTTGTAGG------CTCTA-AG-ATGCA--------------------------CTGCAGCATGTCC---------------CCC---------------------------------------TTAG--C-CCG-AGCACGAA-TGGCAGCTCC---CC---------------------------------------------------CAAGC----------------------------CGA---A---------------------------------GGCCAACATCC---CACCTTACCTCACT-----------GGCTC--T--------------------TTCTGTTTACTTTCTTTCTTGT-------ACATAACGC-TCA---------------AA-A-------------------------ATCCAAA---------AATCTTGCCAATCCCC------------TCGCCTG--------CG--C---C-GAATGT--AGAGCTTCAGTTCGAAAGCGGCGCTGCACGGCCATGTCCGCATACACGCTTASizeHit CountTotal NormTotal
No Reads
dm3
CTCCCGCGGTGGA---GAAGCCCTATGTCTGCGAGATTGCCGACTGTTCAGCGGTAAGTTCTAGG------CTCTC-AG-ATGCAGCAGCAGCAGCAGCAGCAGCAGCAG-CAGCAGCATGGCC---------------CCTT-G--------------------------------CCCC----AA------TGCACGTA-CTGCAGCTCC---CC--------------------------------------------------AGAAAC----------------------------CAA---A---------------------------------CGCTAACGCCC---CACCTCACCTCACT-----------GGCTC--T--------------------TTCTGTTTACTCTCTTTCCTGT-------ACATAACGC-TCG---------------AA-TATCACAATCA---AA---------AATCCAAA---------TATCTTGCCCATC--C------------CCGCCTG--------CG--C---C-GAATGT--AGAGCTTCAGTTCGAAGGCGGCACTGCACGGCCATGTCCGCATACACGCTTASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................AAGCCCTATGTCTGCGAGAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................AGCTCC---CC--------------------------------------------------AGAAAC----------------------------CAA---A---------------------------------CGC.......................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..CCCGCGGTGGA---GAAGCCCTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...............................CGAGATTGCCGACTGTTCAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................GCAGCAGCAG-CAGCAGCATGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................................................................................................AGCAGCAGCAGCAG-CAGCAGCATGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................GT-------ACATAACGC-TCG---------------AA-CCC........................................................................................................................................................1980.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
...................................................................................CAGCAGCAGCAGCAGCAGCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000
.................................................................................TGCAGCAGCAGCAGCAGCAGCAGCAGCAG-C...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................30100.1010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................ATGCAGCAGCAGCAGCAGCAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23150.0710000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................ATGCAGCAGCAGCAGCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21180.0610000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................GCAGCAGCAGCAGCAGCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................GCAGCAGCAGCAGCAG-CAGCAGCAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................TGCAGCAGCAGCAGCAGCAGCAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................AGCAGCAGCAG-CAGCAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................AGCAGCAGCAGCAGCAGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CTCCCGCGGTGGA---GAAGCCCTATGTCTGCGAGATCGCCGACTGCTCAGCGGTAAGTTCTAGG------CTCTC-AG-ATGCTGCAGCAG---------------CAG-CAGCAGCATGCCC---------------CCTT-G--------------------------------CCCC----AA------TGCACGTA-CTGCAGCTCC---CC--------------------------------------------------AGAAAC----------------------------CGA---A---------------------------------CGCTAACGCCC---CACCTCACCTCACT-----------GGCTC--T--------------------TTCTGTTTACTCTCTTTCCTGT-------ACATAACGC-TCG---------------AA-TGTCACAATCA---AA---------AATCCAAA---------TATCTTGCCCATC--C------------CCGCCTG--------CG--C---C-GAATGT--AGAGCTTCAGTTCGAAGGCGGCACTGCACGGCCATGTCCGCATACACGCTTASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAGTTCGAAGGCGGCACTGCACGGC....................2712.00200200000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------TATCTTGCCCATC--C------------CCG..................................................................................1811.00100000100000000000
droSec2
CTCCCGCGGTGGA---GAAGCCCTATGTCTGCGAGATCGCCGACTGCTCAGCGGTAAGTTCTAGG------CTCTC-AG-ATGCAGCAGCAG---------------CAG-CAGCAGCATGCCC---------------CCTT-G--------------------------------CCCC----AA------TGCACGTA-CTGCAGCGCC---CC--------------------------------------------------AGAAAC----------------------------CGA---A---------------------------------CGCTAACGCCC---CACCTCACCTCACT-----------GGCTC--T--------------------TTCTTTTTACTCTCTTTCCTGT-------ACATAACGC-TCG---------------AA-TGTCACAATCA---AA---------AATCCAAA---------TATCTTGCCC--C--C------------CCGCCTG--------CG--C---C-GAATGT--AGAGCTTCAGTTCGAAGGCGGCACTGCACGGCCATGTCCGCATACACGCTTASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
CACCCGCGGTGGA---GAAGCCCTATGTCTGCGAGATCGCCGACTGTTCAGCGGTAAGTTCTAGG------CTCTC-AG-ATGCAGCAGC--CAGCAGCAGCAGCAACAG-CAGCCGCATGCCC---------------CACT-G-------C------------------------CCCC----AA------TGCACGTA-CTGCAGCTCC---CCC-------------------------------------------------AACAAC----------------------------CGA---A---------------------------------CGCTAACGCCC---CACCTCACCTCACT-----------GGCTC--T--------------------TTCTGTTTACTCTCTTTCCTGT-------ACATAACGC-TCG---------------AA-TGTCAAAATCA---AA-------TCAATCCACA---------TATCTTGCCCATT--CCCGCCTGCGCCTTCGCCTG--------CG--C---C-GAATGT--AGAGCTTCAGTTCGAAGGCGGCGCTGCACGGCCATGTCCGCATACACGCTTASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
CACCCGCGGTGGA---GAAGCCCTATGTCTGCGAGATCGCCGACTGTTCCGCGGTAAGTTCTAGG------CTCTC-AT-GTG------------------------CAC-CAGCAGCATGCCC-ATTGCCCTCTGCCCCCCT-G--------------------------------CCCC----AA------TGCACGTG-CTGCAGCTCC---CA---------------------------------------------------AAAA-------------------------------------------------------------------------------------CCGCACCTCACT-----------GGCTC--T--------------------TTCTGTTTACTCTCTTTCCTGT-------ACATAACGC-TCG---------------AA-TGTCACAATCA---AA---------TATCCAAA---------TATCTTGCCCATT--C------------CCGCCTG--------CG--C---C-GAATGT--AGAGCTTCAGTTCGAAGGCGGCGCTGCACGGCCATGTCCGCATACACGCTTASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--C------------CCGCCTG--------CG--C---C-GAATGT--AG..................................................2111.0010000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--C------------CCGCCTG--------CG--C---C-GAATGT--....................................................1911.0010000010

Generated: 05/17/2015 at 10:04 PM