ID:

dps_300

 Coordinate:

2:1734008-1734284 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-85.8 -85.8 -85.8

Flybase annnotation

CDS [Dpse\GA10500-cds]; exon [Dpse\GA10500:25]; exon [Dpse\GA10500:26]; CDS [Dpse\GA10500-cds]; intron [Dpse\GA10500-in]

Repeatable elements

NameClassFamilyStrand
(TG)nSimple_repeatSimple_repeat+
mature
  1. XL_group1e:983725-983747 +
  2. XL_group1e:3936967-3936989 -
  3. dps_2695  XL_group1e:5178406-5178428 -
  4. 4_group5:1542728-1542750 -
  5. Unknown_singleton_1460:8835-8857 -
  6. dps_300  2:1734248-1734270 -
  7. 2:10108367-10108389 -
  8. 2:24391748-24391770 -
  9. 2:28201089-28201111 -
  10. 2:28352720-28352742 -
  11. 2:28358179-28358201 -
  12. XR_group8:5307819-5307841 +
  13. 4_group1:30275-30297 +
  14. 4_group1:5243587-5243609 -
  15. 4_group2:276042-276064 -
  16. XR_group6:12518190-12518212 -
  17. XL_group1a:2710208-2710230 -
star

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TATCAATTTTTATATCCGTGTGGTTAACAGCAGCGGGCATTATACATCTGGTATGTAGAACAGACACACACACACACACCACACACACTCGGGGATCAGCTGTTCCCTGGTCTATGGCTCTGTGACTGGGACTGCAATGTGTGCCAAGAGCCAGTGTCATGAATATAACAAAGAAATACAAATTAATATGCCACATTGCAACCGGCTACAGAGTGTGGAACGAGGGCACGCCTGATCCCACACCGATCCTATATAGAGAGTGTCCAAATTGGTTGAGATTATCGCTGATGCGGTGGATAATGGCATTTGCATTTACTTAAAATTTAGCTGGAGAACTCTGGCGATCCGCTGGATTTTAATAATGCTCATCGTTTATC
***********************************..((((((...((((..........))))..........((.((((...((((((.((((((((.(((.((((.(((((..((((((((.((((...(((((((((.((.........((((..................))))..........))))))))))).)))).)))))))).))).)).)))).))).)))))))).......((.......))))))))......))))))...(((((((....)))))))))))))((....))................((((((....))))))*********************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 V112
male body		 GSM444067
head
 M059
embryo
 GSM343916
embryo
.......................................................................................CGCGGGGATCAGCGGTTC................................................................................................................................................................................................................................................................................ 18 2 1 3447.00 3447 3422 25 0 0 0
......................................................................................ACGCGGGGATCAGCGGTTC................................................................................................................................................................................................................................................................................ 19 2 1 546.00 546 525 21 0 0 0
.......................................................................................CGCGGGGATCAGCGGTTCG............................................................................................................................................................................................................................................................................... 19 3 15 484.13 7262 7092 169 1 0 0
......................................................................................ACGCGGGGATCAGCGGTTCG............................................................................................................................................................................................................................................................................... 20 3 4 229.00 916 822 94 0 0 0
.....................................................................................AACGCGGGGATCAGCGGTTC................................................................................................................................................................................................................................................................................ 20 3 2 134.00 268 243 25 0 0 0
.......................................................................................CTCGGGGATCAGCGGTTC................................................................................................................................................................................................................................................................................ 18 1 1 42.00 42 41 0 1 0 0
......................................................................................ACGCGGGGATCAGCGGTT................................................................................................................................................................................................................................................................................. 18 2 1 16.00 16 15 1 0 0 0
.......................................................................................CTCGGGGATCAGCGGTTCG............................................................................................................................................................................................................................................................................... 19 2 4 11.25 45 32 13 0 0 0
......................................................................................ACCCGGGGATCAGCGGTTC................................................................................................................................................................................................................................................................................ 19 2 1 8.00 8 5 3 0 0 0
.......................................................................................CGCGGGGATCAGCTGTTC................................................................................................................................................................................................................................................................................ 18 1 1 5.00 5 5 0 0 0 0
......................................................................................ACTCGGGGATCAGCGGTTC................................................................................................................................................................................................................................................................................ 19 1 1 4.00 4 3 1 0 0 0
.......................................................................................CCCGGGGATCAGCGGTTC................................................................................................................................................................................................................................................................................ 18 2 3 4.00 12 10 2 0 0 0
.......................................................................................CGCGGGGATCAGCGGTTCC............................................................................................................................................................................................................................................................................... 19 2 1 4.00 4 2 2 0 0 0
.....................................................................................AACTCGGGGATCAGCGGTTC................................................................................................................................................................................................................................................................................ 20 2 1 3.00 3 2 1 0 0 0
......................................................................................ACTCGGGGATCAGCGGTTCG............................................................................................................................................................................................................................................................................... 20 2 3 2.67 8 7 1 0 0 0
.......................................................................................CGCGGGGATCAGCTGTTCG............................................................................................................................................................................................................................................................................... 19 2 2 2.00 4 4 0 0 0 0
......................................................................................ATGCGGGGATCAGCGGTTC................................................................................................................................................................................................................................................................................ 19 3 15 1.67 25 17 8 0 0 0
......................................................................................ACGTGGGGATCAGCGGTTC................................................................................................................................................................................................................................................................................ 19 3 8 1.63 13 8 5 0 0 0
........................................................................................GCGGGGATCAGCGGTTCC............................................................................................................................................................................................................................................................................... 18 2 2 1.50 3 1 2 0 0 0
.......................................................................................CGCGGGGATCAGCGGTTCGC.............................................................................................................................................................................................................................................................................. 20 3 2 1.50 3 3 0 0 0 0
......................................................................................ACGCGGGGATCAGTGGTTC................................................................................................................................................................................................................................................................................ 19 3 9 1.22 11 9 2 0 0 0
......................................................................................ACGCGGGGATCAGCTGTTCG............................................................................................................................................................................................................................................................................... 20 2 1 1.00 1 1 0 0 0 0
......................................................................................ACTCGGGGATCAGCGGTT................................................................................................................................................................................................................................................................................. 18 1 1 1.00 1 1 0 0 0 0
...................................................................................CACCCGCGGGGATCAGCGGTTC................................................................................................................................................................................................................................................................................ 22 3 1 1.00 1 1 0 0 0 0
......................................................................................ACTCGCGGATCAGCGGTTC................................................................................................................................................................................................................................................................................ 19 2 1 1.00 1 0 1 0 0 0
................CTTGTGGTTAACAGCAGCGGG.................................................................................................................................................................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 1 0
.....................................................................................AACGCGGGGATCAGCTGTTCG............................................................................................................................................................................................................................................................................... 21 3 1 1.00 1 0 1 0 0 0
.......................................................................................CACGGGGATCAGCGGTTC................................................................................................................................................................................................................................................................................ 18 2 1 1.00 1 1 0 0 0 0
......................................................................................ACGCGGGGATCAGCGGTTCC............................................................................................................................................................................................................................................................................... 20 2 1 1.00 1 0 1 0 0 0
.............................................................................................................................................................................................................................................................................................................................................................TGGATTGTAATCATGCTCGTCG...... 22 3 1 1.00 1 0 0 1 0 0
.......................................................................................CGCGGGGATCAGCCGTTC................................................................................................................................................................................................................................................................................ 18 2 3 1.00 3 3 0 0 0 0
.....................................................................................AACCCGGGGATCAGCGGTTC................................................................................................................................................................................................................................................................................ 20 3 3 1.00 3 2 1 0 0 0
.......................................................................................CCCGGGGATCAGCGGTTCG............................................................................................................................................................................................................................................................................... 19 3 20 0.75 15 11 4 0 0 0
.......................................................................................CGCGGGGATCAGCGGTTT................................................................................................................................................................................................................................................................................ 18 3 20 0.55 11 11 0 0 0 0
...............................................................................................................................................................................................................................................................................................TTGCGGTGGATGATGGCATTGGC................................................................... 23 3 2 0.50 1 1 0 0 0 0
......................................................................................ACGCGGGGATCACCGGTTC................................................................................................................................................................................................................................................................................ 19 3 6 0.50 3 2 1 0 0 0
.....................................................................................CTCGCGGGGATCAGCGGTTC................................................................................................................................................................................................................................................................................ 20 3 2 0.50 1 1 0 0 0 0
.....................................................................................AACGCGGGGATCAGCGGTT................................................................................................................................................................................................................................................................................. 19 3 9 0.44 4 4 0 0 0 0
......................................................................................ACACGGGGATCAGCGGTTCG............................................................................................................................................................................................................................................................................... 20 3 7 0.43 3 2 1 0 0 0
......................................................................................CCGCGGGGATCAGCGGTTC................................................................................................................................................................................................................................................................................ 19 3 14 0.43 6 6 0 0 0 0
......................................................................................ACCCGGGGATCAGCGGTTCG............................................................................................................................................................................................................................................................................... 20 3 5 0.40 2 2 0 0 0 0
......................................................................................TCGCGGGGATCAGCGGTTC................................................................................................................................................................................................................................................................................ 19 3 10 0.40 4 4 0 0 0 0
.....................................................................................CGCGCGGGGATCAGCGGTTC................................................................................................................................................................................................................................................................................ 20 3 3 0.33 1 1 0 0 0 0
.....................................................................................AACTCGGGGATCAGCGGTTCG............................................................................................................................................................................................................................................................................... 21 3 3 0.33 1 1 0 0 0 0
.....................................................................................AACACGGGGATCAGCGGTTC................................................................................................................................................................................................................................................................................ 20 3 3 0.33 1 1 0 0 0 0
.......................................................................................CTCGGGGATCAGCGGTTCA............................................................................................................................................................................................................................................................................... 19 2 3 0.33 1 1 0 0 0 0
.....................................................................................CACGCGGGGATCAGCGGTTCG............................................................................................................................................................................................................................................................................... 21 3 3 0.33 1 1 0 0 0 0
.....................................................................................TACGCGGGGATCAGCGGTTC................................................................................................................................................................................................................................................................................ 20 3 3 0.33 1 1 0 0 0 0
.........................................................................................CGGGGATCAGCGGTTTCC.............................................................................................................................................................................................................................................................................. 18 2 3 0.33 1 0 1 0 0 0
.....................................................................................CATGCGGGGATCAGCGGTTC................................................................................................................................................................................................................................................................................ 20 3 4 0.25 1 1 0 0 0 0
......................................................................................GCGCGGGGATCAGCGGTTC................................................................................................................................................................................................................................................................................ 19 3 17 0.24 4 4 0 0 0 0
........................................................................................GCGGGGATCAGCGGTTCGC.............................................................................................................................................................................................................................................................................. 19 3 20 0.20 4 3 1 0 0 0
......................................................................................ACGCGGGGATCAGCGGTTT................................................................................................................................................................................................................................................................................ 19 3 10 0.20 2 2 0 0 0 0
.......................................................................................CGCGGGGATCAGCAGTTC................................................................................................................................................................................................................................................................................ 18 2 5 0.20 1 1 0 0 0 0
......................................................................................ACGCGCGGATCAGCGGTTC................................................................................................................................................................................................................................................................................ 19 3 11 0.18 2 2 0 0 0 0
....................................................................................ACAGTCGGGGATGAGCTGTA................................................................................................................................................................................................................................................................................. 20 3 6 0.17 1 0 1 0 0 0
......................................................................................ACGCGGGGATCAGCGGTCC................................................................................................................................................................................................................................................................................ 19 3 8 0.13 1 0 1 0 0 0
......................................................................................................................................................................................................................................................................................................................................GCTGGAGAAATCTGGCGC................................. 18 2 8 0.13 1 1 0 0 0 0
.......................................................................................ACCGGGGATCAGCGGTTCC............................................................................................................................................................................................................................................................................... 19 3 9 0.11 1 0 1 0 0 0
.......................................................................................CACGGGGATCAGCGGTTCG............................................................................................................................................................................................................................................................................... 19 3 20 0.10 2 2 0 0 0 0
.......................................................................................ACCGGGGATCAGCGGTTC................................................................................................................................................................................................................................................................................ 18 3 20 0.10 2 0 2 0 0 0
.......................................................................................CGCGGGGATCAGCGGTTCA............................................................................................................................................................................................................................................................................... 19 3 11 0.09 1 1 0 0 0 0
........................................................................................GCGGGGATCAGCTGTTCG............................................................................................................................................................................................................................................................................... 18 2 12 0.08 1 1 0 0 0 0
......................................................................................AAGCGGGGATCAGCGGTTC................................................................................................................................................................................................................................................................................ 19 3 15 0.07 1 1 0 0 0 0
..........................................................................................................ATGGTCTATGGCTCTGCGCC........................................................................................................................................................................................................................................................... 20 3 18 0.06 1 0 0 0 0 1
.......................................................................................CTCGGGGATCAGCGGGTCG............................................................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 1 0 0 0
......................................................................................AGTCGGGGATGAGCTGTTG................................................................................................................................................................................................................................................................................ 19 3 20 0.05 1 1 0 0 0 0
....................................................................................AAAGTCGGGGATTAGCTGT.................................................................................................................................................................................................................................................................................. 19 3 20 0.05 1 1 0 0 0 0
................................................................CACACACACACACACCACACACA.................................................................................................................................................................................................................................................................................................. 23 0 20 0.05 1 1 0 0 0 0
.......................................................................................CTCGGTGATCAGCGGTTCG............................................................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 1 0 0 0
......................................................................................ATGCGGGGATCAGCGGTT................................................................................................................................................................................................................................................................................. 18 3 20 0.05 1 1 0 0 0 0
.........................................................................................CGGGGATCAGCGGTTCGTT............................................................................................................................................................................................................................................................................. 19 3 20 0.05 1 1 0 0 0 0
.......................................................................................CTCGGGGATCAGTGGTTCG............................................................................................................................................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

ATAGTTAAAAATATAGGCACACCAATTGTCGTCGCCCGTAATATGTAGACCATACATCTTGTCTGTGTGTGTGTGTGTGGTGTGTGTGAGCCCCTAGTCGACAAGGGACCAGATACCGAGACACTGACCCTGACGTTACACACGGTTCTCGGTCACAGTACTTATATTGTTTCTTTATGTTTAATTATACGGTGTAACGTTGGCCGATGTCTCACACCTTGCTCCCGTGCGGACTAGGGTGTGGCTAGGATATATCTCTCACAGGTTTAACCAACTCTAATAGCGACTACGCCACCTATTACCGTAAACGTAAATGAATTTTAAATCGACCTCTTGAGACCGCTAGGCGACCTAAAATTATTACGAGTAGCAAATAG
***********************************..((((((...((((..........))))..........((.((((...((((((.((((((((.(((.((((.(((((..((((((((.((((...(((((((((.((.........((((..................))))..........))))))))))).)))).)))))))).))).)).)))).))).)))))))).......((.......))))))))......))))))...(((((((....)))))))))))))((....))................((((((....))))))*********************************** 		Read size # Mismatch Hit Count Total Norm Total V112
male body		 M040
female body
.....................................................................................................................................................................................................................................................................................................................................................GCTAGGCGACATAAAATCAAT............... 21 3 1 1.00 1 1 0
...............................................................................................................................................................................................................TGACTCCCACCTTGCTGCCG...................................................................................................................................................... 20 3 5 0.20 1 0 1
...............................................................................................................................................GGTAGTCGGTCACAGTAC........................................................................................................................................................................................................................ 18 2 8 0.13 1 0 1
.....................................................................................................................................................................................................................................................................................................................................................GATTGGCGTCCTAAAATT.................. 18 3 20 0.05 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 2:1733958-1734334 - dps_300 TATCAATTTTTA-TATCCGTGTGGTTAACAGCAGCGGGCATTATACATCTGGTATGTAGAA-CAGACACACACACA--------------------------------------------------CACAC-------------------------C-------A--------CACA--CACT----CGGGGATCA-GCTGTTCCCT-------G---GTCTATGGCTCTGTGACTGGG-ACTGCAATGTGTG--CCA-AGAGC-CAGTGTCATGA-ATATAACAAAGAAATACAAATTAATATGCCACATTGCAACCGGCTACAGAGTGTGG--AAC--------------------------GAGGGCACGCCTGA-T--C--CCACA--CCGATC----------------------------------------------CTATATAGAGAGTGTCCA--AA-----------------------------TT-GGTTGAGATTAT-CGCTGATGCG------------GTGGAT--AATGG-CATTTGCATTTACTTAAAATTTAGCTGGAGAACTCTGGCGATCCGCTGGATTTTAATAATGCTCATCGTTTATC
droPer2 scaffold_7:1887363-1887751 - TATCAATTTTTA-TATCCGTGTGGTTAACAGCAGCGGGCATTATACATCTGGTATGTAGAA-CACACAAACACACAC--ACACAC----------------------------------------ACAC--------------ATA----------A-------A--------CCTATACACT----CGGGGATCA-GCTGTTCCCT-------G---GTCTATGGCTCTGTGACTGGG-ACTGCAATGTGTG--CCA-AGAGC-CAGTGTCATGA-ATATAACAAAGAAATACAAATTAATATGCCACATTGCAACCGGCTACAGAGTGTGG--AAC--------------------------GAGGGCACGTCTGA-T--CC--CACAGCC-GATC----------------------------------------------CTATATAGAGAGTGTCCA--AA-----------------------------TT-GGTTGAGATTAT-CGCTGATGCG------------GTGGAT--AATGG-CATTTGCATTTACTTAAAATTTAGCTGGAGAACTCTGGCGATCCGCTGGATTTTAATAATGCTCATCGTTTATC
droWil2 scf2_1100000004902:9597016-9597122 - -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTCCA--ATGGTT--TC-------------------------AATC-------------ATT--------------A-CGAT--TATTGCAATTTGCATTTACTTAAAATTTAGCTGGAGAACTCTGGCGATCCGCTGGATTTTAATAATGCTCATCGTTTATC
droVir3 scaffold_13047:799052-799444 + dvi_14966 TATCAATTTTTA-TATCCGTGTGGTTAACAGCAGCGGGCATTATACATCTGGTATGTAGACACACACTCACAGTTAACA-----T----------------------------------------TTAC--------------ACA----------C-------A--------CAT-----------------TTA-GCTATGCGTGTCGCGCGTCTTCCAGCCGGCTCTGTGGCAGA--TTTGCAGCGCGTG--TC--TGAGC-CAGTT-A--AA-ATATTACG--------------CATACGCCGCGTTGCACGCTGTTACAGAGTATGA--GCCCGG--------CGCTAACAGCTG--GGAGGGCGTGCGTA-----GCGC-------------------------------------------------------------TTTTTCCAGTGTCCA--ATGGCAT-AGG---------AAATGTGCAATCT-GA-----ATAAT-CGCTGATGCGTATTTGTTTGCAATTGAA--AATTG-CAATTGCATTTTCTTAAAATTTAGCTGGAGAACTCTGGCGATCCGCTGGATTTTAATAATGCTCATCGTTTATC
droMoj3 scaffold_6540:4799843-4800313 + TATCAATTTTTA-TATCCGTGTGGTTAACAGCAGCGGGCATTATACATCTGGTATGTAGACACACAAACACATATA----CACACTCACCAACAC--ACACACCT--------------------ACACACGA---ACACTCAACAGAAAAACGCAC-------ACACACACCCACA--CACTCACACTGTATTCA-GCTATGCATGACGACCGTCTTCCAGCCGGCTCTGTGACAGC--TCTGCAGTGCGTG--CT--TGAGC-CAGTTGA--AG-AGATTACG--------------TATACGCCGCGCGGCACGCTGTCACAGAGCACGA--GTGTGGCAAGCTGACGCTGATAGCTGA-GGAGGGCATGCGTG-----------------------------------------------------------------GCGTTTTTTTGCAGTGCCCC--A---A-AAAGGTTCCATTTG---TGTTCAATAT-GA-----ATAAT-CGCTGATGCGTATTTATTTGCAATTGATC-GATTG-CAATTGCATTTACTTAAAATTTAGCTGGAGAACTCTGGCGATCCGCTGGATTTTAATAATGCTCATCGTTTATC
droGri2 scaffold_14906:5506289-5506705 - TATCAATTTTTA-TATCCGTGTGGTTAACAGCAGCGGGCATTATACATCTGGTATGTAGACACACACTCACACA----------C------------------CTACACAATTACACACATACACT--------------TTTAAA----------C-------A--------TTTACACAC---------TCTCA-GCTATGCGTGACGAGCGTCTTCCCGACGGCTCTGTGACAGA--TTTGCAGTGTGTG--TT--TGAGC-CAGTT-A--AA-AGATTACG--------------CATACGCCTCGCTGCACACTGTTACAGAGCATGT--G------------------------GAGGAAGGACGTACGTT-----TCGCTT-------------------------------------------------------TCTTTTTGTCGAGTGTCCA--ATGGCATAGTG----ATTTGAAATGTGCAATGTCGA-----AAAAT-CGCTGATGCGTATTTGTTTGCAATTGAA--AATTG-CAATTGCATTTACTTAAAATTTAGCTGGAGAACTCTGGCGATCCGCTGGATTTTAATAATGCTCATCGTTTATC
droAna3 scaffold_13340:4674115-4674504 - TATCAATTTTTA-TATCCGTGTGGTTAACAGCAGCGGGCATTATACATCTGGTATGTAGAAACACACCCACATTTAACT-----C----------------------------------------GA----------------ATA----------C-------A--------CCTG--CACACCC-CGGGAATCAGGCTGTGCCTG-------TG-TCTGTGTGACTTTGTGACCG----------TGCGTG--CCA-TGTGCACAGACCA--GAAATATTACG--------------CATACGCCTCGTGGCACGCCGCTACAAAGTCTGA--GAC---------------------------AGGGCACACCTGA-T--ACCCTACA--C-TTT-GTATTTAT-------ATTAATA----TATATTTTGTAAATATGGATGTGTACTTGGAGTGTCCA--ATAGTA--GC-------------------------GATG-------------AGTAG------------AGAAAT--GATAC-CATTTGCATTTACTTAAAATTTAGCTGGAGAACTCTGGCGATCCGCTGGATTTTAATAATGCTCATCGTTTATC
droBip1 scf7180000396359:515863-516251 + TATCAATTTTTA-TATCCGTGTGGTTAACAGCAGCGGGCATTATACATCTGGTATGTAGAAACACACCCACATTCAACT-----C----------------------------------------TA----------------ATA----------C-------A--------CCAGCAC----ACCCGGGAATCA-GGTGTGCCTA-------TG-CCTGTGTGACTTTGTGAC----------AGTGCGTG--GCA-TGTGTCTAGTCCA--GATATATTACG--------------TATACGCCTCGTGGCACGCCGCTACAAAGTCCGA--GAC---------------------------GGGGCACACTTGA-T--ACCCTACA--CCTTT-GTATTTAT-------ATTA--A--TAAATGTTTTGTAAATATGGATGTGTAACTGGAGTGTCCA--ATAGTA--GC-------------------------GATG-------------AGTTG------------AGAAAT--GATTC-CATTTGCATTTACTTAAAATTTAGCTGGAGAACTCTGGCGATCCGCTGGATTTTAATAATGCTCATCGTTTATC
droKik1 scf7180000302388:1695759-1696148 - TATCAATTTTTA-TATCCGTGTGGTTAACAGCAGCGGGCATTATACATCTGGTATGTAGAAACACACACA-A------------------------------------------------------CAC--------------ACA----------C-------A--------CATA--C--TAAT-T-GGGATCG-GTTGTGCCTGC-----TTG-GGTGAGTGCCTCTGTGACATG--GTTGCAACGCGTG--CTACAGAGC-CAGTACCA-AAAAAATTACG--------------CATACGCCGCGTTGCATTCTGGCACAGAGACCGC--CTG---------------------------TGGGCACGCCCGA-A--TCCCTACA--C-TAT-----ATCTGCAC---A----TATTTATGTG---------CCAGGATGTGTTTATGGAGTGTCCA--AA------------------------------T-AGATGAACCGAT-CGCTGAGGCG------------ACTGATAAAATTG-CATTTGCATTTACTTAAAATTTAGCTGGAGAACTCTGGCGATCCGCTGGATTTTAATAATGCTCATCGTTTATC
droFic1 scf7180000454106:1811080-1811508 - TATCAATTTTTA-TATCCGTGTGGTTAACAGCAGCGGGCATTATACATCTGGTATGTAGAAACACACACACAAACA----CTGGT--------ACACGCA----------------------CACTCACACAA---ACACTCGACA----------C-------A--------CATA--CAC--ACGC-G-GATCGGGTTGTAACTG-------TG-TGTGGGTGACTCTGTGATGGGTTTTTGCAATGTGTG--CGA-GGAGC-CAGTCCC--GA-AAATCACG--------------CATACGCCGCGTTGCA-CCCGCCACAGAGCCCCGAAAAC---------------------------CAGTCACTTCCGGAT--TCCCTACA--C-TGT-------ACAAA----A----TATATATCTG---------TTTCGATGTGTTTATGGAGTGTCCA--GTAGCA--ACG---------A-C-------CTT-TGATGACACGATCCGCTGATGCG------------GCTGAT--AATTG-CATTTGCATTTACTTAAAATTTAGCTGGAGAACTCTGGCGATCCGCTGGATTTTAATAATGCTCATCGTTTATC
droEle1 scf7180000491194:558290-558688 + TATCAATTTTTA-TATCCGTGTGGTTAACAGCAGCGGGCATTATACATCTGGTATGTAGAAAAACACTCACGCA----------C----------------------------------------TCACACAAAACACACTCGACA----------C-------A--------TATA--CACACACGC-GGAATGG-GTTGTGCCTGA-----GTG-TGCGGATGACTCTGTGACGGGC-TTTGCAGTGTGTGTGCGA-GGAGC-CAGTCCC--AA-ATATCACG--------------CATACGCCGCGTTGCAACCCGGTACAGAGCCCAA--AAC---------------------------CAGGCACTTCCGA-T--GCCCCACA--C-TA--------------------------TGTCTG---------TATCGATGTGTTTATGGAGTGTCCAAAGCAGCA--AG-------------------------AATG----GATCCGCTGATGCG------------GCTGAT--AATTG-CATTTGCATTTACTTAAAATTTAGCTGGAGAACTCTGGCGATCCGCTGGATTTTAATAATGCTCATCGTTTATC
droRho1 scf7180000779488:600011-600416 + TATCAATTTTTA-TATCCGTGTGGTTAACAGCAGCGGGCATTATACATCTGGTATGTAGAAACACACACACGCA----------C----------------------------------------TCACACAA---ACACTCGACA----------CTCGATTTA--------CATA--CAC--ACGC-GGGATGG-GTTGTGCCTG-------TG-TGTGGGTGACTCTGTGGCGGG--TTTGCAGTGTGTGTGCAA-GGAGC-CAGTCCC--GA-ATATCACG--------------CATACGCCGCGTTGCAGCCCGCTACAGAGCCCAA--AAC---------------------------CGGGCACGTCCGA-T--TCGCCACA--C-AAT-----ATGT-------T----TATGTATCTG---------TATCGATGTGTTTATGGAGTGTCAA--ACAGCA--AG-------------------------GATG----GATCCGCTCATGCG------------GCTGAT--AATTG-CATTTGCATTTACTTAAAATTTAGCTGGAGAACTCTGGCGATCCGCTGGATTTTAATAATGCTCATCGTTTATC
droBia1 scf7180000302402:4281211-4281619 + TATCAATTTTTA-TATCCGTGTGGTTAACAGCAGCGGGCATTATACATCTGGTATGTAGAAACACACACACGCA----------------------------------------------------CACTCAA---ACACTCGACA----------C-------A--------CATA--CCAACACGAGGGGATCG-GTTGTGCCCG-------TG-TGTGGGTGTATCTGTGGCGGG--TTGGCAATGTGTG--CGA-GGAGC-CAGTA-C--GA-ATATCACG--------------CATACGCAGCGTTGT-GCCCGCTACAGAGCCCCAA-AAC---------------------------AGGGCACTTTCGA-C--ACCCCACA--C-TAT-----ATAAGT----------TATATATCTG---------TATCGATGTGTTTGTGGAGTGTCCC--ACCGA--GGGG---------A-C-------CTC-AGATGACCCGATCCACTGATGCG------------GCTGAT--AATTG-CATTTGCATTTACTTAAAATTTAGCTGGAGAACTCTGGCGATCCGCTGGATTTTAATAATGCTCATCGTTTATC
droTak1 scf7180000415310:638379-638792 - TATCAATTTTTA-TATCCGTGTGGTTAACAGCAGCGGGCATTATACATCTGGTATGTAGAAACACACGCACAC----------------------------------------------------TCACACAA---ACACTCGACA----------C-------A--------CATA--CAC--ACG--GGGATCG-GTTGTGCCTG-------TG-TGTGGGTGACGCTGTGGCGGG--TTTGCAGTGTGTG--CAA-GGAGC-CAGTC-C--GA-ATATCAAG--------------CATACGCCGCGTTGCAACCTGCTACAGAGCCCCAAAAAC---------------------------CGGGCACTTCCGA-GTTGCCCCACC--ACTAT-AC--ATATGTAC----------TATATCTG---------TATCGATGTGTTTATGGAGTGTCCC--ATCGAAAGAGG---------A-C-------TTT-GGATGACCTGATCCGCTGATGCG------------GCTGAT--AATTG-CATTTGCATTTACTTAAAATTTAGCTGGAGAACTCTGGCGATCCGCTGGATTTTAATAATGCTCATCGTTTATC
droEug1 scf7180000409881:225998-226423 + TATCAATTTTTATTATCCGTGTGGTTAACAGCAGCGGGCATTATACATCTGGTATGTAGAAACACACACACACACA----CACAC--------------AC----------------ACATACACTTACACAA---ACACTCGACA----------C-------T--------CATA--CAAATACTA-GGTATCT-ATATTGCCTG-------TG-TGTGGGTGTCTCTGTGATGGGC-TTTGCAGTGTGTGTGCAA-GGAGC-CAGTCCA--GATTTATTACG--------------CATACGCCACGTTGCATCCCGACACAGAGCCCCAAAAGC---------------------------CAGGCACTCTCGA-T--AGCCTACA--C-TAT-----ATACCCAA---A----GA--TATCTG---------TATCGATGTGTTTATGGAGTGTCCA-AGAAGT------------------------------GAGGATATGATCCGCTGATGCG------------GCTGAT--AATTG-CATTTGCATTTACTTAAAATTTAGCTGGAGAACTCTGGCGATCCGCTGGATTTTAATAATGCTCATCGTTTATC
dm3 chr3R:20500991-20501404 + TATCAATTTTTA-TATCCGTGTGGTTAACAGCAGCGGGCATTATACATCTGGTATGTAGAAACACACACACA------------------------------------------------------CACACAA---ACACTCGACA----------C-------A--------CATA--CACTGACGC-GCGATCG-ATTGTGCCTG-------TG-TGTGGATGACTCTGTGATGGG--TTTGCAGTGTGTG--TGA-GAAGC-CAGTCCC--GA-ATATTACG--------------CATACGCCACGTTGCAGCCTACTACAGAGCCCCAA-AGC---------------------------CAGGCACCTTCGA-T--ACGCCACA--A-G-----ATTTACGAAC-ATA----TATGTATCTG---------TTTCGATGTGTTTATGAAGTGACCA--ACCGA-AAAGG---------A-C-------TTT-AGATGACCTGATCCGCTGATGCG------------GCTGAT--AATTG-CATTTGCATTTACTTAAAATTTAGCTGGAGAACTCTGGCGATCCGCTGGATTTTAATAATGCTCATCGTTTATC
droSim2 3r:20018634-20019049 + dsi_30649 TATCAATTTTTA-TATCCGTGTGGTTAACAGCAGCGGGCATTATACATCTGGTATGTAGAAACACACACACA------------------------------------------------------TACACAA---ACACTCGACA----------C-------A--------CATA--CACTCACGC-GCGATCG-GTTGTGCCTG-------TG-TGTGGGTGACTCTGTGATGGG--TTTGCAGTGTGTGTGCGA-GAAGC-CAGTTTC--GA-ATATTACG--------------CATACGCCGCGTTGCAGCCTGCTACAGAGCCCCAA-AAC---------------------------CAGGCACCTTCGA-G--ACGCCACA--A-G-----ATTTACGAAC-ATA----TATGTATCTG---------TTTCGATGTGTTTATGGAGTGTCCA--ACCGA-TAAGG---------A-C-------TTT-CGATGACCTGATCCGCTGATGCG------------GCTGAT--AATTG-CATTTGCATTTACTTAAAATTTAGCTGGAGAACTCTGGCGATCCGCTGGATTTTAATAATGCTCATCGTTTATC
droSec2 scaffold_0:20835464-20835877 + TATCAATTTTTA-TATCCGTGTGGTTAACAGCAGCGGGCATTATACATCTGGTATGTAGAAACACACACACA------------------------------------------------------TACACAA---GCACTCGACA----------C-------A--------CATA--CACTCACGC-GCGATCG-GTTGTGCCTG-------TG-TGTGGGTGACTCTGTGATGGG--TTTGCAGTGTGTG--CGA-GAAGC-CAGTCCC--GA-ATATTACG--------------CATACGCCGCGTTGCAGCCTGCTACAGAGCCCCAA-AGC---------------------------CAGGCACCTTCGA-G--ACGCCACA--A-G-----ATTTACGAAC-ATA----TATGTATCTG---------TTTCGATGTGTTTATGGAGTGTCCA--ACCGA-TAAGG---------A-C-------TTT-CGATGACCTGATCCGCTGATGCG------------GCTGAT--AATTG-CATTTGCATTTACTTAAAATTTAGCTGGAGAACTCTGGCGATCCGCTGGATTTTAATAATGCTCATCGTTTATC
droYak3 3R:25995525-25995971 - TATCAATTTTTA-TATCCGTGTGGTTAACAGCAGCGGGCATTATACATCTGGTATGTAGAAACACACAAATACACA----CAC--------------GCACACCTACCCATCTA--------CACTCACACAA---ACACTCGACA----------C-------A--------CATA--CACTCACGC-GCGTTCG-CTTGTGCCTG-------TG-TGTGGGTGACTCTGTGGTCGG--TTTGCAGTGTGTG--CGA-GAAGC-CAGTCCC--GA-ATATTACG--------------CATACGCCGCGTTGCAGCCTGTCACAGAGCCCCGAAAAC---------------------------CAGGCATCGGCGA-T--ACGCCACA--A-T-----ATTTACGATCGATACAAGTA--TATATG---------TTTCGATGTGTTTATGGAGTGTCCA--ATCGTAAAAGG---------A-C-------TTT-GGATGACCTGATCCGCTGATGCG------------GCTGAT--AATTG-CATTTGCATTTACTTAAAATTTAGCTGGAGAACTCTGGCGATCCGCTGGATTTTAATAATGCTCATCGTTTATC
droEre2 scaffold_4820:7556790-7557211 - der_976 TATCAATTTTTA-TATCCGTGTGGTTAACAGCAGCGGGCATTATACATCTGGTATGTAGAAACACACAAACACATAA--GCA--C------------TCAC------------------------ACACACAA---ACACTCGACA----------C-------A--------CATA--CACGCACGC-GCGATCG-GTTGTGCCTG-------T---GTGGGTGACTCTGTGGTGGG--CTTGCAGCGTGTG--CGA-GGAGC-CAGTCCC--GA-ATATTACG--------------CATACGCCGCGTTGCAGCCCGCTACAGAGCCCCAA-AAG---------------------------CAGGCACTTTCGA-T--ACGCCACA--A-T-----ATTTACGAAC-A----A--A--TATATG---------TTTCGATGTGTTTATGGAGTGTCCA--ACCGA-AGAGG---------A-C-------TTT-GGACGACCTGATCCGCTGATGCG------------GCTGAT--AATTG-CATTTGCATTTACTTAAAATTTAGCTGGAGAACTCTGGCGATCCGCTGGATTTTAATAATGCTCATCGTTTATC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
TATCAATTTTTA-TATCCGTGTGGTTAACAGCAGCGGGCATTATACATCTGGTATGTAGAA-CAGACACACACACA--------------------------------------------------CACAC-------------------------C-------A--------CACA--CACT----CGGGGATCA-GCTGTTCCCT-------G---GTCTATGGCTCTGTGACTGGG-ACTGCAATGTGTG--CCA-AGAGC-CAGTGTCATGA-ATATAACAAAGAAATACAAATTAATATGCCACATTGCAACCGGCTACAGAGTGTGG--AAC--------------------------GAGGGCACGCCTGA-T--C--CCACA--CCGATC----------------------------------------------CTATATAGAGAGTGTCCA--AA-----------------------------TT-GGTTGAGATTAT-CGCTGATGCG------------GTGGAT--AATGG-CATTTGCATTTACTTAAAATTTAGCTGGAGAACTCTGGCGATCCGCTGGATTTTAATAATGCTCATCGTTTATCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................................CACACACACA--------------------------------------------------CACAC-------------------------C-------A--------CACA--CA........................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510100000000
droPer2
TATCAATTTTTA-TATCCGTGTGGTTAACAGCAGCGGGCATTATACATCTGGTATGTAGAA-CACACAAACACACAC--ACACAC----------------------------------------ACAC--------------ATA----------A-------A--------CCTATACACT----CGGGGATCA-GCTGTTCCCT-------G---GTCTATGGCTCTGTGACTGGG-ACTGCAATGTGTG--CCA-AGAGC-CAGTGTCATGA-ATATAACAAAGAAATACAAATTAATATGCCACATTGCAACCGGCTACAGAGTGTGG--AAC--------------------------GAGGGCACGTCTGA-T--CC--CACAGCC-GATC----------------------------------------------CTATATAGAGAGTGTCCA--AA-----------------------------TT-GGTTGAGATTAT-CGCTGATGCG------------GTGGAT--AATGG-CATTTGCATTTACTTAAAATTTAGCTGGAGAACTCTGGCGATCCGCTGGATTTTAATAATGCTCATCGTTTATCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTCCA--ATGGTT--TC-------------------------AATC-------------ATT--------------A-CGAT--TATTGCAATTTGCATTTACTTAAAATTTAGCTGGAGAACTCTGGCGATCCGCTGGATTTTAATAATGCTCATCGTTTATCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
TATCAATTTTTA-TATCCGTGTGGTTAACAGCAGCGGGCATTATACATCTGGTATGTAGACACACACTCACAGTTAACA-----T----------------------------------------TTAC--------------ACA----------C-------A--------CAT-----------------TTA-GCTATGCGTGTCGCGCGTCTTCCAGCCGGCTCTGTGGCAGA--TTTGCAGCGCGTG--TC--TGAGC-CAGTT-A--AA-ATATTACG--------------CATACGCCGCGTTGCACGCTGTTACAGAGTATGA--GCCCGG--------CGCTAACAGCTG--GGAGGGCGTGCGTA-----GCGC-------------------------------------------------------------TTTTTCCAGTGTCCA--ATGGCAT-AGG---------AAATGTGCAATCT-GA-----ATAAT-CGCTGATGCGTATTTGTTTGCAATTGAA--AATTG-CAATTGCATTTTCTTAAAATTTAGCTGGAGAACTCTGGCGATCCGCTGGATTTTAATAATGCTCATCGTTTATCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA-----ATAAT-CGCTGATGCGTATT................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGAACTCTGGCGATCCGCT...........................2211.001000000000000000001000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................AGA--TTTGCAGCGCGTG--TC--TGAGC-C...................................................................................................................................................................................................................................................................................................................................................................2411.001000100000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAT-CGCTGATGCGTATTTGTTTGC.........................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT-CGCTGATGCGTATTTGTTTGC.........................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
..................GTGTGGTTAACAGCAGCGGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000001000
droMoj3
TATCAATTTTTA-TATCCGTGTGGTTAACAGCAGCGGGCATTATACATCTGGTATGTAGACACACAAACACATATA----CACACTCACCAACAC--ACACACCT--------------------ACACACGA---ACACTCAACAGAAAAACGCAC-------ACACACACCCACA--CACTCACACTGTATTCA-GCTATGCATGACGACCGTCTTCCAGCCGGCTCTGTGACAGC--TCTGCAGTGCGTG--CT--TGAGC-CAGTTGA--AG-AGATTACG--------------TATACGCCGCGCGGCACGCTGTCACAGAGCACGA--GTGTGGCAAGCTGACGCTGATAGCTGA-GGAGGGCATGCGTG-----------------------------------------------------------------GCGTTTTTTTGCAGTGCCCC--A---A-AAAGGTTCCATTTG---TGTTCAATAT-GA-----ATAAT-CGCTGATGCGTATTTATTTGCAATTGATC-GATTG-CAATTGCATTTACTTAAAATTTAGCTGGAGAACTCTGGCGATCCGCTGGATTTTAATAATGCTCATCGTTTATCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.....................................................................................................................................................................................................................................TGTGACAGC--TCTGCAGTGCGT.................................................................................................................................................................................................................................................................................................................................................................................2113.003002100
.....................................................................................................................................................................................................................................TGTGACAGC--TCTGCAGTGCGTG--T.............................................................................................................................................................................................................................................................................................................................................................................2311.001001000
....................................................................................................................................................................................................................................CTGTGACAGC--TCTGCAGTGCG..................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
..................................................................................................................................................................................................................................................................................................................CGCGCGGCACGCTGTCACAGAG.....................................................................................................................................................................................................................................................................................................2211.001000001
............................................................................................................................................................................................................................................................................................................ATACGCCGCGCGGCACGCTGTCACAGA......................................................................................................................................................................................................................................................................................................2711.001001000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGGAGAACTCTGGCGATCCGCT...........................2511.001001000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTCTGGCGATCCGCTGG.........................2011.001000010
....................................................................................................................................................................................................................................CTGTGACAGC--TCTGCAGTGCGT.................................................................................................................................................................................................................................................................................................................................................................................2211.001000100
.....................................................................................................................................................................................................................................TGTGACAGC--TCTGCAGTGCGTG--C.............................................................................................................................................................................................................................................................................................................................................................................2311.001000100
.........................................................................................................................................................................................................................................................................................................................CACGCTGTCACAGAGCACG.................................................................................................................................................................................................................................................................................................1911.001000100
.....................................................................................................................................................................................................................................TGTGACAGC--TCTGCAGTGCGTG--..............................................................................................................................................................................................................................................................................................................................................................................2211.001000100
.......................................................................................................................................................................................................................................................................................................................................................AGCTGACGCTGATAGCTGA-G.................................................................................................................................................................................................................................................................2011.001001000
..TCAATTTTTA-TATCCGTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
.....................................................................................................................................................................................................................................TGTGACAGC--TCTGCAGTGCG..................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
droGri2
TATCAATTTTTA-TATCCGTGTGGTTAACAGCAGCGGGCATTATACATCTGGTATGTAGACACACACTCACACA----------C------------------CTACACAATTACACACATACACT--------------TTTAAA----------C-------A--------TTTACACAC---------TCTCA-GCTATGCGTGACGAGCGTCTTCCCGACGGCTCTGTGACAGA--TTTGCAGTGTGTG--TT--TGAGC-CAGTT-A--AA-AGATTACG--------------CATACGCCTCGCTGCACACTGTTACAGAGCATGT--G------------------------GAGGAAGGACGTACGTT-----TCGCTT-------------------------------------------------------TCTTTTTGTCGAGTGTCCA--ATGGCATAGTG----ATTTGAAATGTGCAATGTCGA-----AAAAT-CGCTGATGCGTATTTGTTTGCAATTGAA--AATTG-CAATTGCATTTACTTAAAATTTAGCTGGAGAACTCTGGCGATCCGCTGGATTTTAATAATGCTCATCGTTTATCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
TATCAATTTTTA-TATCCGTGTGGTTAACAGCAGCGGGCATTATACATCTGGTATGTAGAAACACACCCACATTTAACT-----C----------------------------------------GA----------------ATA----------C-------A--------CCTG--CACACCC-CGGGAATCAGGCTGTGCCTG-------TG-TCTGTGTGACTTTGTGACCG----------TGCGTG--CCA-TGTGCACAGACCA--GAAATATTACG--------------CATACGCCTCGTGGCACGCCGCTACAAAGTCTGA--GAC---------------------------AGGGCACACCTGA-T--ACCCTACA--C-TTT-GTATTTAT-------ATTAATA----TATATTTTGTAAATATGGATGTGTACTTGGAGTGTCCA--ATAGTA--GC-------------------------GATG-------------AGTAG------------AGAAAT--GATAC-CATTTGCATTTACTTAAAATTTAGCTGGAGAACTCTGGCGATCCGCTGGATTTTAATAATGCTCATCGTTTATCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TATCAATTTTTA-TATCCGTGTGGTTAACAGCAGCGGGCATTATACATCTGGTATGTAGAAACACACCCACATTCAACT-----C----------------------------------------TA----------------ATA----------C-------A--------CCAGCAC----ACCCGGGAATCA-GGTGTGCCTA-------TG-CCTGTGTGACTTTGTGAC----------AGTGCGTG--GCA-TGTGTCTAGTCCA--GATATATTACG--------------TATACGCCTCGTGGCACGCCGCTACAAAGTCCGA--GAC---------------------------GGGGCACACTTGA-T--ACCCTACA--CCTTT-GTATTTAT-------ATTA--A--TAAATGTTTTGTAAATATGGATGTGTAACTGGAGTGTCCA--ATAGTA--GC-------------------------GATG-------------AGTTG------------AGAAAT--GATTC-CATTTGCATTTACTTAAAATTTAGCTGGAGAACTCTGGCGATCCGCTGGATTTTAATAATGCTCATCGTTTATCSizeHit CountTotal NormTotal
No Reads
droKik1
TATCAATTTTTA-TATCCGTGTGGTTAACAGCAGCGGGCATTATACATCTGGTATGTAGAAACACACACA-A------------------------------------------------------CAC--------------ACA----------C-------A--------CATA--C--TAAT-T-GGGATCG-GTTGTGCCTGC-----TTG-GGTGAGTGCCTCTGTGACATG--GTTGCAACGCGTG--CTACAGAGC-CAGTACCA-AAAAAATTACG--------------CATACGCCGCGTTGCATTCTGGCACAGAGACCGC--CTG---------------------------TGGGCACGCCCGA-A--TCCCTACA--C-TAT-----ATCTGCAC---A----TATTTATGTG---------CCAGGATGTGTTTATGGAGTGTCCA--AA------------------------------T-AGATGAACCGAT-CGCTGAGGCG------------ACTGATAAAATTG-CATTTGCATTTACTTAAAATTTAGCTGGAGAACTCTGGCGATCCGCTGGATTTTAATAATGCTCATCGTTTATCSizeHit CountTotal NormTotal
No Reads
droFic1
TATCAATTTTTA-TATCCGTGTGGTTAACAGCAGCGGGCATTATACATCTGGTATGTAGAAACACACACACAAACA----CTGGT--------ACACGCA----------------------CACTCACACAA---ACACTCGACA----------C-------A--------CATA--CAC--ACGC-G-GATCGGGTTGTAACTG-------TG-TGTGGGTGACTCTGTGATGGGTTTTTGCAATGTGTG--CGA-GGAGC-CAGTCCC--GA-AAATCACG--------------CATACGCCGCGTTGCA-CCCGCCACAGAGCCCCGAAAAC---------------------------CAGTCACTTCCGGAT--TCCCTACA--C-TGT-------ACAAA----A----TATATATCTG---------TTTCGATGTGTTTATGGAGTGTCCA--GTAGCA--ACG---------A-C-------CTT-TGATGACACGATCCGCTGATGCG------------GCTGAT--AATTG-CATTTGCATTTACTTAAAATTTAGCTGGAGAACTCTGGCGATCCGCTGGATTTTAATAATGCTCATCGTTTATCSizeHit CountTotal NormTotal
No Reads
droEle1
TATCAATTTTTA-TATCCGTGTGGTTAACAGCAGCGGGCATTATACATCTGGTATGTAGAAAAACACTCACGCA----------C----------------------------------------TCACACAAAACACACTCGACA----------C-------A--------TATA--CACACACGC-GGAATGG-GTTGTGCCTGA-----GTG-TGCGGATGACTCTGTGACGGGC-TTTGCAGTGTGTGTGCGA-GGAGC-CAGTCCC--AA-ATATCACG--------------CATACGCCGCGTTGCAACCCGGTACAGAGCCCAA--AAC---------------------------CAGGCACTTCCGA-T--GCCCCACA--C-TA--------------------------TGTCTG---------TATCGATGTGTTTATGGAGTGTCCAAAGCAGCA--AG-------------------------AATG----GATCCGCTGATGCG------------GCTGAT--AATTG-CATTTGCATTTACTTAAAATTTAGCTGGAGAACTCTGGCGATCCGCTGGATTTTAATAATGCTCATCGTTTATCSizeHit CountTotal NormTotal
No Reads
droRho1
TATCAATTTTTA-TATCCGTGTGGTTAACAGCAGCGGGCATTATACATCTGGTATGTAGAAACACACACACGCA----------C----------------------------------------TCACACAA---ACACTCGACA----------CTCGATTTA--------CATA--CAC--ACGC-GGGATGG-GTTGTGCCTG-------TG-TGTGGGTGACTCTGTGGCGGG--TTTGCAGTGTGTGTGCAA-GGAGC-CAGTCCC--GA-ATATCACG--------------CATACGCCGCGTTGCAGCCCGCTACAGAGCCCAA--AAC---------------------------CGGGCACGTCCGA-T--TCGCCACA--C-AAT-----ATGT-------T----TATGTATCTG---------TATCGATGTGTTTATGGAGTGTCAA--ACAGCA--AG-------------------------GATG----GATCCGCTCATGCG------------GCTGAT--AATTG-CATTTGCATTTACTTAAAATTTAGCTGGAGAACTCTGGCGATCCGCTGGATTTTAATAATGCTCATCGTTTATCSizeHit CountTotal NormTotal
No Reads
droBia1
TATCAATTTTTA-TATCCGTGTGGTTAACAGCAGCGGGCATTATACATCTGGTATGTAGAAACACACACACGCA----------------------------------------------------CACTCAA---ACACTCGACA----------C-------A--------CATA--CCAACACGAGGGGATCG-GTTGTGCCCG-------TG-TGTGGGTGTATCTGTGGCGGG--TTGGCAATGTGTG--CGA-GGAGC-CAGTA-C--GA-ATATCACG--------------CATACGCAGCGTTGT-GCCCGCTACAGAGCCCCAA-AAC---------------------------AGGGCACTTTCGA-C--ACCCCACA--C-TAT-----ATAAGT----------TATATATCTG---------TATCGATGTGTTTGTGGAGTGTCCC--ACCGA--GGGG---------A-C-------CTC-AGATGACCCGATCCACTGATGCG------------GCTGAT--AATTG-CATTTGCATTTACTTAAAATTTAGCTGGAGAACTCTGGCGATCCGCTGGATTTTAATAATGCTCATCGTTTATCSizeHit CountTotal NormTotal
No Reads
droTak1
TATCAATTTTTA-TATCCGTGTGGTTAACAGCAGCGGGCATTATACATCTGGTATGTAGAAACACACGCACAC----------------------------------------------------TCACACAA---ACACTCGACA----------C-------A--------CATA--CAC--ACG--GGGATCG-GTTGTGCCTG-------TG-TGTGGGTGACGCTGTGGCGGG--TTTGCAGTGTGTG--CAA-GGAGC-CAGTC-C--GA-ATATCAAG--------------CATACGCCGCGTTGCAACCTGCTACAGAGCCCCAAAAAC---------------------------CGGGCACTTCCGA-GTTGCCCCACC--ACTAT-AC--ATATGTAC----------TATATCTG---------TATCGATGTGTTTATGGAGTGTCCC--ATCGAAAGAGG---------A-C-------TTT-GGATGACCTGATCCGCTGATGCG------------GCTGAT--AATTG-CATTTGCATTTACTTAAAATTTAGCTGGAGAACTCTGGCGATCCGCTGGATTTTAATAATGCTCATCGTTTATCSizeHit CountTotal NormTotal
No Reads
droEug1
TATCAATTTTTATTATCCGTGTGGTTAACAGCAGCGGGCATTATACATCTGGTATGTAGAAACACACACACACACA----CACAC--------------AC----------------ACATACACTTACACAA---ACACTCGACA----------C-------T--------CATA--CAAATACTA-GGTATCT-ATATTGCCTG-------TG-TGTGGGTGTCTCTGTGATGGGC-TTTGCAGTGTGTGTGCAA-GGAGC-CAGTCCA--GATTTATTACG--------------CATACGCCACGTTGCATCCCGACACAGAGCCCCAAAAGC---------------------------CAGGCACTCTCGA-T--AGCCTACA--C-TAT-----ATACCCAA---A----GA--TATCTG---------TATCGATGTGTTTATGGAGTGTCCA-AGAAGT------------------------------GAGGATATGATCCGCTGATGCG------------GCTGAT--AATTG-CATTTGCATTTACTTAAAATTTAGCTGGAGAACTCTGGCGATCCGCTGGATTTTAATAATGCTCATCGTTTATCSizeHit CountTotal NormTotal
No Reads
dm3
TATCAATTTTTA-TATCCGTGTGGTTAACAGCAGCGGGCATTATACATCTGGTATGTAGAAACACACACACA------------------------------------------------------CACACAA---ACACTCGACA----------C-------A--------CATA--CACTGACGC-GCGATCG-ATTGTGCCTG-------TG-TGTGGATGACTCTGTGATGGG--TTTGCAGTGTGTG--TGA-GAAGC-CAGTCCC--GA-ATATTACG--------------CATACGCCACGTTGCAGCCTACTACAGAGCCCCAA-AGC---------------------------CAGGCACCTTCGA-T--ACGCCACA--A-G-----ATTTACGAAC-ATA----TATGTATCTG---------TTTCGATGTGTTTATGAAGTGACCA--ACCGA-AAAGG---------A-C-------TTT-AGATGACCTGATCCGCTGATGCG------------GCTGAT--AATTG-CATTTGCATTTACTTAAAATTTAGCTGGAGAACTCTGGCGATCCGCTGGATTTTAATAATGCTCATCGTTTATCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGCTGATGCG------------GCTGAT--AATT............................................................................2211.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................ATCG-ATTGTGCCTG-------TG-TGTGGA..............................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
..............ATCCGTGTGGTTAACAGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.....................TGGTTAACAGCAGCGGGCAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................ATCTGGTATGTAGAAACACACACAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................TGACGC-GCGATCG-ATTGTGCCT...............................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................CTG-------TG-TGTGGATGACTCTGTGATGG................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
.............TATCCGTGTGGTTAACAGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................CG--------------CATACGCCACGTTGCAGC................................................................................................................................................................................................................................................................................................................2020.5010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................TATTACG--------------CATACGCCACGTTG....................................................................................................................................................................................................................................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................ATTACG--------------CATACGCCACGTTGC...................................................................................................................................................................................................................................................................................................................2160.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TATCAATTTTTA-TATCCGTGTGGTTAACAGCAGCGGGCATTATACATCTGGTATGTAGAAACACACACACA------------------------------------------------------TACACAA---ACACTCGACA----------C-------A--------CATA--CACTCACGC-GCGATCG-GTTGTGCCTG-------TG-TGTGGGTGACTCTGTGATGGG--TTTGCAGTGTGTGTGCGA-GAAGC-CAGTTTC--GA-ATATTACG--------------CATACGCCGCGTTGCAGCCTGCTACAGAGCCCCAA-AAC---------------------------CAGGCACCTTCGA-G--ACGCCACA--A-G-----ATTTACGAAC-ATA----TATGTATCTG---------TTTCGATGTGTTTATGGAGTGTCCA--ACCGA-TAAGG---------A-C-------TTT-CGATGACCTGATCCGCTGATGCG------------GCTGAT--AATTG-CATTTGCATTTACTTAAAATTTAGCTGGAGAACTCTGGCGATCCGCTGGATTTTAATAATGCTCATCGTTTATCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................................................................................................................CA----------C-------A--------CATA--CACTCACGC-G...............................................................................................................................................................................................................................................................................................................................................................................................................................................1813.00300000300000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCGCTGGATTTTAATAATGCTCATC.......2811.00100010000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGAACTCTGGCGATCCGCTGGATT......................2611.00100100000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGAACTCTGGCGATCCGCTGG.........................2311.00100100000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGG---------A-C-------TTT-CGATGACCTGA................................................................................................................1911.00100100000000000000
.....ATTTTTA-TATCCGTGTGGTTAACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000000000
........TTTA-TATCCGTGTGGTTAACAGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010000000000000
droSec2
TATCAATTTTTA-TATCCGTGTGGTTAACAGCAGCGGGCATTATACATCTGGTATGTAGAAACACACACACA------------------------------------------------------TACACAA---GCACTCGACA----------C-------A--------CATA--CACTCACGC-GCGATCG-GTTGTGCCTG-------TG-TGTGGGTGACTCTGTGATGGG--TTTGCAGTGTGTG--CGA-GAAGC-CAGTCCC--GA-ATATTACG--------------CATACGCCGCGTTGCAGCCTGCTACAGAGCCCCAA-AGC---------------------------CAGGCACCTTCGA-G--ACGCCACA--A-G-----ATTTACGAAC-ATA----TATGTATCTG---------TTTCGATGTGTTTATGGAGTGTCCA--ACCGA-TAAGG---------A-C-------TTT-CGATGACCTGATCCGCTGATGCG------------GCTGAT--AATTG-CATTTGCATTTACTTAAAATTTAGCTGGAGAACTCTGGCGATCCGCTGGATTTTAATAATGCTCATCGTTTATCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................................................................................................................................................................................................................................................................................ATACGCCGCGTTGCAGCCTGC............................................................................................................................................................................................................................................................................................................2111.0010001
..................GTGTGGTTAACAGCAGCGGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATGGAGTGTCCA--ACCGA-.......................................................................................................................................................2011.0011000
..............ATCCGTGTGGTTAACAGCAGCGGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAACTCTGGCGATCCGCTG..........................2111.0010010
................CCGTGTGGTTAACAGCAGCGGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
............................................................................................................................................................................................................................................................................................................ATACGCCGCGTTGCAGCCTGCT...........................................................................................................................................................................................................................................................................................................2211.0010001
.......TTTTA-TATCCGTGTGGTTAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
..........................................................................................................................................................................................................................................TGGG--TTTGCAGTGTGTG--CGA-GC........................................................................................................................................................................................................................................................................................................................................................................2211.0010001
droYak3
TATCAATTTTTA-TATCCGTGTGGTTAACAGCAGCGGGCATTATACATCTGGTATGTAGAAACACACAAATACACA----CAC--------------GCACACCTACCCATCTA--------CACTCACACAA---ACACTCGACA----------C-------A--------CATA--CACTCACGC-GCGTTCG-CTTGTGCCTG-------TG-TGTGGGTGACTCTGTGGTCGG--TTTGCAGTGTGTG--CGA-GAAGC-CAGTCCC--GA-ATATTACG--------------CATACGCCGCGTTGCAGCCTGTCACAGAGCCCCGAAAAC---------------------------CAGGCATCGGCGA-T--ACGCCACA--A-T-----ATTTACGATCGATACAAGTA--TATATG---------TTTCGATGTGTTTATGGAGTGTCCA--ATCGTAAAAGG---------A-C-------TTT-GGATGACCTGATCCGCTGATGCG------------GCTGAT--AATTG-CATTTGCATTTACTTAAAATTTAGCTGGAGAACTCTGGCGATCCGCTGGATTTTAATAATGCTCATCGTTTATCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................................................................................................................................................................TA--CACTCACGC-GCGTTCG-CTTGTGC.................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
..............ATCCGTGTGGTTAACAGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
...........................................................................................................................................................................................................................................................................................................................................CGAAAAC---------------------------CAGGCATCGGC.....................................................................................................................................................................................................................................................1811.00100100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTAGCTGGAGAACTCTGGA...................................2211.00100100000000
....................GTGGTTAACAGCAGCGGGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGAGAACTCTGGCGATCCGCTGGAT.......................2811.00100100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTTAATAATGCTCATC.......1911.00101000000000
..........TA-TATCCGTGTGGTTAACAGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
droEre2
TATCAATTTTTA-TATCCGTGTGGTTAACAGCAGCGGGCATTATACATCTGGTATGTAGAAACACACAAACACATAA--GCA--C------------TCAC------------------------ACACACAA---ACACTCGACA----------C-------A--------CATA--CACGCACGC-GCGATCG-GTTGTGCCTG-------T---GTGGGTGACTCTGTGGTGGG--CTTGCAGCGTGTG--CGA-GGAGC-CAGTCCC--GA-ATATTACG--------------CATACGCCGCGTTGCAGCCCGCTACAGAGCCCCAA-AAG---------------------------CAGGCACTTTCGA-T--ACGCCACA--A-T-----ATTTACGAAC-A----A--A--TATATG---------TTTCGATGTGTTTATGGAGTGTCCA--ACCGA-AGAGG---------A-C-------TTT-GGACGACCTGATCCGCTGATGCG------------GCTGAT--AATTG-CATTTGCATTTACTTAAAATTTAGCTGGAGAACTCTGGCGATCCGCTGGATTTTAATAATGCTCATCGTTTATCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................................................................................................................................................................................................................TGGG--CTTGCAGCGTGTG--CGA-GG........................................................................................................................................................................................................................................................................................................................................................................2213.0030000030
..........................................................................................................................................................................................................................................TGGG--CTTGCAGCGTGTG--CGA-GGA.......................................................................................................................................................................................................................................................................................................................................................................2312.0020000020
............................................................................................................................................................................................................................................................................................................ATACGCCGCGTTGCAGCCCGCT...........................................................................................................................................................................................................................................................................................................2212.0020000020
............................................................................................................................................................................................................................................GG--CTTGCAGCGTGTG--CGA-GG........................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
...........A-TATCCGTGTGGTTAACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTGGAGAACTCTGGC...................................1911.0010100000
.........................................................................................................................................................................................................................................GTGGG--CTTGCAGCGTGTG--CGA-GGAG......................................................................................................................................................................................................................................................................................................................................................................2511.0010000100
..........................................................................................................................................................................................................................................TGGG--CTTGCAGCGTGTG--CGA-..........................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
..............ATCCGTGTGGTTAACAGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
.......................................................................................................................................................................................................................................TGGTGGG--CTTGCAGCGTGTG--C.............................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
..........................................................................................................................................................................................................................................TGGG--CTTGCAGCGTGTG--CGA-GGAGC-....................................................................................................................................................................................................................................................................................................................................................................2511.0010000100
....................GTGGTTAACAGCAGCGGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
..........................................................................................................................................................................................................................................TGGG--CTTGCAGCGTGTG--CGA-GGAG......................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTCTGGCGATCCGCTGGA........................2111.0010001000

Generated: 06/11/2015 at 06:02 PM