ID:

dps_30

 Coordinate:

4_group3:7165422-7165486 -

 Confidence:

confident

 Class:

Canonical miRNA

 Genomic Locale:

intergenic

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-40.9 -40.7 -40.5

Flybase annnotation

intergenic

No Repeatable elements found

mature

  1. dps_30  4_group3:7165423-7165445 -
  2. dps_31  Unknown_singleton_3046:125-147 +
star

  1. dps_30  4_group3:7165466-7165486 -
  2. dps_31  Unknown_singleton_3046:84-104 +

Sense Strand Reads

ACAAAAGATAAAACTAATCTCGGATCGGATGTTCCTTAAACCTTAACTGCCGTCTTGCAGCGCCTGTGGACGATAGGTCCAAAATTTCAGTCTACAGACGCTGCGATTCCGGGCAGTTGAGTGGATGGGATCCACCTTTAAATCACACTTAAAGCTATGTGCACA

***********************************......((((((((((...((((((((.((((((((((.............)).)))))))).)))))))).....))))))))))........************************************ 		Read size # Mismatch Hit Count Total Norm Total M040

female body

 V112

male body		 M062

head

 M059

embryo

 GSM444067

head

 GSM343916

embryo

 M022

male body		 SRR902011

testis

 SRR902012

CNS imaginal disc

 SRR902010

ovaries
...........................................................................................CTACAGACGCTGCGATTCCGGGC................................................... 23 0 2 347.00 694 592 63 16 1 4 1 11 3 3 0
...........................................................................................CTACAGACGCTGCGATTCCGGG.................................................... 22 0 2 235.50 471 446 22 1 0 2 0 0 0 0 0
...........................................................................................CTACAGACGCTGCGATTCCGG..................................................... 21 0 2 122.00 244 227 14 1 1 0 1 0 0 0 0
...........................................................................................CTACAGACGCTGCGATTCCG...................................................... 20 0 2 45.00 90 35 49 0 0 6 0 0 0 0 0
..................................................CGTCTTGCAGCGCCTGTGGAC.............................................................................................. 21 0 2 28.50 57 47 4 2 1 2 0 1 0 0 0
..................................................CGTCTTGCAGCGCCTGTGGA............................................................................................... 20 0 2 26.00 52 39 8 0 0 5 0 0 0 0 0
............................................................................................TACAGACGCTGCGATTCCGGGC................................................... 22 0 2 21.50 43 43 0 0 0 0 0 0 0 0 0
............................................................................................TACAGACGCTGCGATTCCGGG.................................................... 21 0 2 14.00 28 28 0 0 0 0 0 0 0 0 0
............................................................................................TACAGACGCTGCGATTCCGG..................................................... 20 0 2 13.00 26 24 2 0 0 0 0 0 0 0 0
..................................................CGTCTTGCAGCGCCTGTGG................................................................................................ 19 0 2 9.00 18 18 0 0 0 0 0 0 0 0 0
...................................................GTCTTGCAGCGCCTGTGGAC.............................................................................................. 20 0 2 8.50 17 14 0 3 0 0 0 0 0 0 0
...........................................................................................CTACAGACGCTGCGATTCC....................................................... 19 0 2 7.00 14 12 0 1 0 1 0 0 0 0 0
...........................................................................................CTACAGACGCTGCGATTCCGGGCT.................................................. 24 1 2 4.00 8 6 0 0 0 0 1 1 0 0 0
...........................................................................................CTACAGACGCTGCGATTCCGGGT................................................... 23 1 2 3.50 7 7 0 0 0 0 0 0 0 0 0
...........................................................................................CGACAGACGCTGCGATTCCGGGC................................................... 23 1 2 2.50 5 0 0 5 0 0 0 0 0 0 0
..........................................................................................TCTACAGACGCTGCGATTCCGGG.................................................... 23 0 2 2.00 4 4 0 0 0 0 0 0 0 0 0
..........................................................................................TCTACAGACGCTGCGATTCCGG..................................................... 22 0 2 2.00 4 4 0 0 0 0 0 0 0 0 0
...................................................GTCTTGCAGCGCCTGTGGA............................................................................................... 19 0 2 2.00 4 4 0 0 0 0 0 0 0 0 0
...........................................................................................CTACAGACGCTGCGATTCCGGGCA.................................................. 24 0 2 2.00 4 1 0 0 2 0 1 0 0 0 0
..................................................CGTCTTGCAGCGCCTGTG................................................................................................. 18 0 2 2.00 4 4 0 0 0 0 0 0 0 0 0
.............................................ACTGCCGTCTTGCAGCGCCTGT.................................................................................................. 22 0 2 1.50 3 0 0 0 0 0 3 0 0 0 0
..................................................................................AATTTCAGTCTACAGACGCTGC............................................................. 22 0 2 1.50 3 0 0 0 0 0 3 0 0 0 0
...........................................................................................CTACAGACGCTGCGATTCCGGGCTT................................................. 25 2 2 1.50 3 3 0 0 0 0 0 0 0 0 0
..................................................CGTCTTGCAGCGCCTGTGGT............................................................................................... 20 1 2 1.50 3 3 0 0 0 0 0 0 0 0 0
...........................................................................................CTACAGACGCTGCGATTCCGGT.................................................... 22 1 2 1.50 3 3 0 0 0 0 0 0 0 0 0
...............................................................................................AGACGCTGCGATTCCGGGCA.................................................. 20 0 2 1.50 3 3 0 0 0 0 0 0 0 0 0
..........................................................................................................TTCCGGGCAGTTGAGTGGATGG..................................... 22 0 2 1.00 2 0 0 0 0 0 0 0 2 0 0
................................................................................AAAATTTCAGTCTACAGACGCTGC............................................................. 24 0 2 1.00 2 0 0 0 2 0 0 0 0 0 0
............................................AACTGCCGTCTTGCAGCGCCTGT.................................................................................................. 23 0 2 1.00 2 0 0 0 1 0 1 0 0 0 0
..............................................................................................CAGACGCTGCGATTCCGGGCA.................................................. 21 0 2 1.00 2 0 0 0 1 0 1 0 0 0 0
...........................GATGTTCCTTAAACCTTAACTG.................................................................................................................... 22 0 2 1.00 2 1 0 0 1 0 0 0 0 0 0
..........................................................................................CCTACAGACGCTGCGATTCCGGGC................................................... 24 1 2 1.00 2 2 0 0 0 0 0 0 0 0 0
...................................................................................ATTTCAGTCTACAGACGCTGC............................................................. 21 0 2 1.00 2 1 0 0 0 0 1 0 0 0 0
..................................................CGTCTTGCAGCGCCTGTGGTT.............................................................................................. 21 2 2 1.00 2 1 1 0 0 0 0 0 0 0 0
...................................................GTCTTGCAGCGCCTGTGGACG............................................................................................. 21 0 2 1.00 2 2 0 0 0 0 0 0 0 0 0
............................................................................................TACAGACGCTGCGATTCCGGGCT.................................................. 23 1 2 1.00 2 2 0 0 0 0 0 0 0 0 0
.............................................................................................ACAGACGCTGCGATTCCGGGC................................................... 21 0 2 1.00 2 2 0 0 0 0 0 0 0 0 0
..........................................................................................GCTACAGACGCTGCGATTCCGGGC................................................... 24 1 2 1.00 2 2 0 0 0 0 0 0 0 0 0
...............................................................................................AGACGCTGCGATTCCGGG.................................................... 18 0 2 1.00 2 1 1 0 0 0 0 0 0 0 0
......................................................................................TCAGTCTACAGACGCTGCGATT......................................................... 22 0 2 1.00 2 2 0 0 0 0 0 0 0 0 0
...................................................GTCTTGCAGCGCCTGTGG................................................................................................ 18 0 2 1.00 2 2 0 0 0 0 0 0 0 0 0
...........................................................................................CTACAGACGCTGCGATTCT....................................................... 19 1 2 1.00 2 2 0 0 0 0 0 0 0 0 0
..................................................CGTCTTGCAGCGCCTGTGGAT.............................................................................................. 21 1 2 1.00 2 2 0 0 0 0 0 0 0 0 0
...........................................................................................CTACAGACGCTGCGATTCCGGA.................................................... 22 1 2 1.00 2 2 0 0 0 0 0 0 0 0 0
..................................................CGTCTTGCAGCGCCTGTGGACG............................................................................................. 22 0 2 1.00 2 2 0 0 0 0 0 0 0 0 0
...........................................................................................CTACAGACGCTGCGATTCCGGGCC.................................................. 24 1 2 1.00 2 2 0 0 0 0 0 0 0 0 0
............................................................................................TACAGACGCTGCGATTCCG...................................................... 19 0 2 1.00 2 2 0 0 0 0 0 0 0 0 0
..........................................................................................TCTACAGACGCTGCGATTCCG...................................................... 21 0 2 1.00 2 0 0 0 0 0 0 0 0 2 0
.........................................CTTAACTGCCGTCTTGCAGCGCCTGC.................................................................................................. 26 1 2 1.00 2 0 0 0 2 0 0 0 0 0 0
..................................................CGTCTTGCAGCGCCTGTGGACT............................................................................................. 22 1 2 1.00 2 2 0 0 0 0 0 0 0 0 0
..........................................................................................TCTACAGACGCTGCGATTCCGGGA................................................... 24 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0
.................................CCTTAAACCTTAACTGCCGTC............................................................................................................... 21 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0
...........................................................................................CTACAGACGCTGCGATTC........................................................ 18 0 2 0.50 1 0 0 0 0 0 0 1 0 0 0
...........................................................................................CTACAGACGCTGCGATTCCGGGCTTT................................................ 26 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0
................................................................................................GACGCTGCGATTCCGGGCA.................................................. 19 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0
..............................................................................................CAGACGCTGCGATTCCGGGC................................................... 20 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
........................................................................ATAGGTCCAAAATTTCAGTCTAC...................................................................... 23 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0
.........AAAACTAATCTCGGATCGGATG...................................................................................................................................... 22 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
.........................................................CAGCGCCTGTGGACGATAGGT....................................................................................... 21 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0
............................................................................................TACAGACGCTGCGATTCCGGGT................................................... 22 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................CTACAGACGCTGCCATTCCGGGC................................................... 23 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................CTACAGACGCTGCGATTCCGGGA................................................... 23 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................CTACAGACGCTGCAATTCCGG..................................................... 21 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................ACTACAGACGCTGCGATTCCGG..................................................... 22 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0
..............................................CTGCCGTCTTGCCGCGCCTGTG................................................................................................. 22 1 2 0.50 1 0 0 0 0 0 1 0 0 0 0
.........AAAACTAATCTCGGATCGGATGTC.................................................................................................................................... 24 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0
...................................................................................................................GTTGAGTGGATGGGATCCACCTT........................... 23 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0
...........................................................................................CTACAGACGCTCCGATTCCG...................................................... 20 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0
...........................................................................................CTACAGACACTGCGATTCCGGGC................................................... 23 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................TGCAGTCTACAGACGCTGCGATT......................................................... 23 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0
......................................................TTGCAGCGCCTGTGGACGATA.......................................................................................... 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
...................................................GTCGTGCAGCGCCTGTGGA............................................................................................... 19 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0
.................................................CCGTCTTGCAGCGCCTGTGGAC.............................................................................................. 22 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................CTACAGACGCTTCGATTCCGG..................................................... 21 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0
......GGTAAAACTAATCTCTGATCGGAT....................................................................................................................................... 24 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0
..................................................CGCCTTGCAGCGCCTGTGGAC.............................................................................................. 21 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0
............................................................................................TGCAGACGCTGCGATTCCGGG.................................................... 21 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0
............................................................................................TACAGTCGCTGCGATTCCGGGC................................................... 22 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0
...........................................................................................CTACAGACGCTGCGATTCCGGC.................................................... 22 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................CGATAGACGCTGCGATTCCGGGCA.................................................. 24 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0
...............AATCTCGGATCGGATGTTCCTTAAACCTT......................................................................................................................... 29 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0
............................................................................................TACAGACGCTGCGATTCCGGGCA.................................................. 23 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................CTACAGACGCTGCGATTCCCGGC................................................... 23 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0
..................................CTTAAACCTTAACTGCCGTCTTGCAGC........................................................................................................ 27 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0
.........................................................................................GGCTACAGACGCTGCGATTCCGGGCAGTC............................................... 29 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0
............................................................................................TACAGACGCTGCGATTCCGGGCTT................................................. 24 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................CTACAGACGCTGCGATTCCGGGTT.................................................. 24 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................TTCAGTCTACAGACGCTGCG............................................................ 20 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................GATTCCGGGTAGTTGAGGGGTT....................................... 22 3 2 0.50 1 0 0 0 0 0 1 0 0 0 0
...................................TTAAACCTTAACTGCCGTCTTGCAGCGCC..................................................................................................... 29 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0
........................................................................................................GATTCCGGGCAGTTGAGTGGATGGG.................................... 25 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0
..........................................................................................GTTACAGACGCTGCGATTCCGG..................................................... 22 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0
.....................................AAACCTTAACTGCCGTCTTGCAGC........................................................................................................ 24 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0
...........................................................................................CTACAGACGCTACGATTCCGGGC................................................... 23 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0
...................................................GTCTTGCAGCGCCTGTGGTT.............................................................................................. 20 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0
...........................................................................................TTACAGACGCTGCGATTCCGGG.................................................... 22 1 2 0.50 1 0 0 0 0 0 1 0 0 0 0
.......ATAAAACTAATCTCGGATCGGAC....................................................................................................................................... 23 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0
..................................CGTAAACCTTAACTGCCGTCTTGCAGC........................................................................................................ 27 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0
...........................................................................................CTACAGACCCTGCGATTCCGGGC................................................... 23 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................CTACAGACGCCGCGATTCCGGGC................................................... 23 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0
.......................ATCGGATGTTCCTTAAACCTTAACTGC................................................................................................................... 27 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0
............................................................................................................CCGGGCAGTTGAGTGGATG...................................... 19 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................CCTTAAAATCACACTTAAAGCTATGT..... 26 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0
...............................................................................................AGATGCTGCGATTCCGGGC................................................... 19 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0
...........................................................................................CTACAGACGCTGCGATTCCAGG.................................................... 22 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0
....................................................TCTTGCAGCGCCTGTGGAC.............................................................................................. 19 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
........................................................GCAGCGCCTGTGGACGATAG......................................................................................... 20 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0
...........................................................................................CTATAGACGCTGCGATTCCGGGC................................................... 23 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0
...................................................................................................................GTTGAGTGGATGGGATCCACCT............................ 22 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0
...........................................................................................CTACAGACGCTGCGGTTCCGGGCA.................................................. 24 1 2 0.50 1 0 0 0 0 0 1 0 0 0 0
...................................................GTATTGCAGCGCCTGTGGAC.............................................................................................. 20 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0
...........................................................................................CTACAGACGCTGCGATTCCGCGC................................................... 23 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................CTACATACGCTGCGATTCCGGGC................................................... 23 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................CTACAGAAGCTGCGATTCCGGGC................................................... 23 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0
....................................TAAACCTTAACTGCCGTCTTGCAG......................................................................................................... 24 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0
......GATAAAACTAATCTCGGATC........................................................................................................................................... 20 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0
..................................................................................................................AGTTGAGTGGATGGGATCCACCTT........................... 24 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0
..................................................CGTCCTGCAGCGCCTGTGGAC.............................................................................................. 21 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................TTACAGACGCTGCGATTCCGGGCAGTT............................................... 27 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0
......................................................TTGCAGCGCCTGTGGACGATAG......................................................................................... 22 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
................ATCTCGGATCGGATGTTCCTTAAACC........................................................................................................................... 26 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0
...........................................................................................CTACAGACGCAGCGATTCCGGGC................................................... 23 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0
...................................................................................ATTTCAGTCTACAGACGCTGCGATTCC....................................................... 27 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
...................................TTAAACCTTAACTGCCGTCTTGCAGCGC...................................................................................................... 28 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0
..................................................CGTCTTGCAGCGCCTGTGT................................................................................................ 19 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................CTACAGACGCTGCGATTCCGGTTT.................................................. 24 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0
........................................................GCAGCGCCTGTGGACGATAGGCCC..................................................................................... 24 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0
..............................................CTGCCGTCTTGCAGCGCCTGT.................................................................................................. 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
............................................................................................TACAGACGCTGCGATTCCGGGTC.................................................. 23 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................CACTACAGACGCTGCGATTCCGGGC................................................... 25 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0
................................................................................AAAATTTCAGTCTACAGACGCTGCGA........................................................... 26 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0
............................................................................................................CCGGGCAGTTGAGTGGATGGG.................................... 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................GATTCCGGGCAGTTGAGTGGATGG..................................... 24 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
....................................................TCTTGCAGCGCCTGTGGACGATAGG........................................................................................ 25 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................ACTACAGACGCTGCGATTCCGGG.................................................... 23 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0
..............................................CTGCCGTCTTGCAGCGCCTGTG................................................................................................. 22 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
....................................................TCTTGCAGCGCCTGTGGA............................................................................................... 18 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
....................................................TCTTGCAGCGCCTGTGGACG............................................................................................. 20 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................TACACTACAGACGCTGCGATTCCGGG.................................................... 26 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................TTCCGGGCAGTTGAGTGGATGGA.................................... 23 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................CTACAGACGCTGCGAATCCG...................................................... 20 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0
.............................................................................................ACAGACGCTGCGATTCCGGG.................................................... 20 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
......................................................................................TGAGTCTACAGTCGCTGCGATTCCGGGC................................................... 28 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0
............................................................................................TACAGACGCTGCGATTCC....................................................... 18 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................TCTACAGACGCTGCGATTCC....................................................... 20 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................GATTCCGGGCAGTTGAGTGGAT....................................... 22 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0
...........................................................................................CTACAGACGCTGCGATTCCGGAC................................................... 23 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0
...................................................GTCTTGCAGCGCCTGTGGACC............................................................................................. 21 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................CTACAGACGCTGCGATTCTGG..................................................... 21 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................AGACGCTGCGATTCCGGGCAGT................................................ 22 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0
......................................................TTGCAGCGCCTGTGGACGATAGG........................................................................................ 23 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0
......................................AGCCTTAACTGCCGTCTTGCAGCGCC..................................................................................................... 26 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0
...........................................................................................CTGCAGACGCTACGATTCCGG..................................................... 21 2 3 0.33 1 0 0 0 0 1 0 0 0 0 0
...........................................................................................CTACAGACGCTGCCCTTCCCGGC................................................... 23 3 3 0.33 1 0 0 0 0 1 0 0 0 0 0
...................................................GTCTTGAAGCGCTTGTGG................................................................................................ 18 2 11 0.09 1 1 0 0 0 0 0 0 0 0 0
.......................TTCGGATGTTCATTAAATC........................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1
...........................................................................................CTACAGACGCTGCGACTTT....................................................... 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

TGTTTTCTATTTTGATTAGAGCCTAGCCTACAAGGAATTTGGAATTGACGGCAGAACGTCGCGGACACCTGCTATCCAGGTTTTAAAGTCAGATGTCTGCGACGCTAAGGCCCGTCAACTCACCTACCCTAGGTGGAAATTTAGTGTGAATTTCGATACACGTGT

************************************......((((((((((...((((((((.((((((((((.............)).)))))))).)))))))).....))))))))))........*********************************** 		Read size # Mismatch Hit Count Total Norm Total M040

female body

 V112

male body		 GSM444067

head
...........................................................................................GATGTCTGCGACGCTAAGGC...................................................... 20 0 2 0.50 1 1 0 0
.................AGAGCCTATCCTACAAGGAAT............................................................................................................................... 21 1 2 0.50 1 1 0 0
...........................................................................................................................CTACCCTAGGTGGAAATTTAG..................... 21 0 2 0.50 1 1 0 0
..........................................................TCGCGGACACCTGCTATCCA....................................................................................... 20 0 2 0.50 1 0 1 0
...............................................................................................................................CCTAGGGGGAAATGTAGGGT.................. 20 3 8 0.13 1 0 0 1
.........................................................................................................GAAGGCCCGTCAGCGCACC......................................... 19 3 16 0.06 1 1 0 0
......................................................................................................................................GGAATTTGGGTGTGAATTT............ 19 3 20 0.05 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
dp5 4_group3:7165372-7165536 - dps_30 confident ACA-AAAGATAAAAC---TAAT-C-TCGGATCGG--------------------ATGTTCCTTAAACC---------T--TAACTGCCGTCTTGCAGCGCCT--GTGGACG--ATAGGTCCAAA---ATTTCAGTCTACAGACGCTGCGATTCCG-GGCAGTTGAGT-GG---AT--------GGGAT---CCA--CCTTTAAATCACACTTAAAGCTA--TGTGCACA----------
droPer2 scaffold_1:8612784-8612948 - dpe_229 confident ACA-AAAGATAAAAC---TAAT-C-TCGGATCGG--------------------ATGTTCCTTAAACC---------T--TAACTGCCGTCTTGCAGCGCCT--GTGGACG--ATAGGTCCAAA---ATTTCAGTCTACAGACGCTGCGATTCCG-GGCAGTTGAGT-GG---AT--------GGGAT---CCA--CCTTTAAATCACACTTAAAGCTA--TGTGCACA----------
droWil2 scf2_1100000004945:407286-407437 + dwi_5419 candidate-rescued ATA-CATGATATATCCTCCAAA--TGTGAATTAGATAT-----AAGTTATATCCA-------GTGATC------GATT--TAATTGCCGTCTTGCAGGGTCTTTGTAAAGAATCCAGGTCCAAATT-AAAT-TCTTTATAGATCCTGCGATTCTG-GGCAATTGAAT-GA-----------------------------------CACACTGAA-------------------------
droVir3 scaffold_12963:14467473-14467585 - dvi_24646 candidate-rescued AGT-CTATGTA----------------------------------------------------------------ATG--TAACTGCCGTCTTGCAACGCCT--GTGGATA-CAAAGGTCCAAA---AATT-AATCCACACGAGTTGCGATTCTG-GGCAGTTGA---------------------------------------TTTTACTAAAATCTT--TATGCACA----------
droMoj3 scaffold_6500:15423853-15423994 - dmo_3155 candidate GACAACAG----CACAGCAGC---C------GGCACTC--------------G---------------------TCTT--TAACTGCCGTCTTGCAGCTCCT--GTGGATG-CCCAGGTCCAAT---AAGT-AATCCACACGTGCTGCGATTCCG-GGCAGTTGAGG-GG---A-GCAA-CAGG--AT--TCCT--TTAA-GAACTACAGCT------A--------------------
droGri2 scaffold_15252:2029231-2029386 + dgr_469 candidate ATA-GAGGA---ATCATCATAAT-T------TGTAT---------ATCAATCTA-T------ATAATCTTACAATGAT--TAACTGCCGTCTTGCCGGGCCT--GTGGGCA-CCCAGGTCCAAACAAAAGT-TGCCCACATGCTCGGCGATTCTG-AGCAGTTAAA--------------------------C---TCAGT---------TTAA--CTT--CATTCACAACT-------
droAna3 scaffold_12916:9588080-9588226 - dan_4042 candidate-rescued TTA-AG------------------------------------------GAACCGTT------T--ATC------TCCCATTAACTGCTGTCTTGCAGAGTCT--GTGGAC---G-TGGTCCAAA----TT--TGTCTACAGCCACTGCGATTCCG-GGCAGTTGAAAGTG---AT--AA-TACGG-AC--TCCCCAAAAACACATCACATCT-GCGCTT--TGTGCACC----------
droBip1 scf7180000396580:1442858-1443004 + TTA-AG------------------------------------------GATCAGCA-T----T---TC------TCCCATTAACTGCCGTCTTGCAGCGTCT--GTGGAC---G-TGGTCCAAA----TT--TGTCTACAGCCGCTGCGATTCCGGGGCAGTTGCAAGTG---AAACCA-TACGG-AT--TCCT--CAAATACATCACATCT-GCGCTT--TGTGCAC-----------
droKik1 scf7180000302246:274527-274648 + A--------------------------------------------------------------------------------AACTGCTGTCTTGCAGCGCCT--GTGGAC---TGTGGTCCAAA----TTA-AGTCTACAGTCGCTGCGATTCCG-GGCAGTTGAGT-GGCCGATGCTG-G----------------------ATCGCACTTAACGCTTCGTGTGCACC--GCAGAGAA
droFic1 scf7180000453924:1051732-1051906 + AGA-AGAGATAGG--ATCGGA---T------TGGAGTG-----G-ATCGATCGCCT------GGGATC------TGCC--TAACTGCCGTCTTGCAGCGC-C--GTAGAC---TTTGGTCCAAA---ATTT-AGCCTACGGCCGCTACGATTCCG-GGCAGTTGAAA-GG---ATCCAG-GATGCGAGT-CGC---CCAACCCTTCACACTTAACGCTT--TGTGCACC----------
droEle1 scf7180000491046:1758551-1758727 + AGA-AGAGATAAGTCAACGGA---T------CGGATTG-----GAGTGGATCGGAT------TGCGTC------TGCC--TAACTGCCGTCTTGCAGCAC-T--GTAGTC---TTTGGTCCAAA---ATTT-AGTCTACAGCCGCTGCGATTCTG-GGCAGTTGAAA-GG---ATGCAATGATGACAG---GC---CCAGACCATCACACTTAACGCTT--TGTGCACC----------
droRho1 scf7180000780028:158230-158404 + AGA-GGAGATAAGTCAACGGA---T------CGGATTG-----GAATGGATTGGAT------TGGATC------TGCC--TAACTGCCGTCTTGCAGCGC-T--GTATTC---TTTGGTCCAAA---ATTT-AGTCTATAGTCGCTACGATTCTG-GGCAGTTGAAA-TG---ATCCAA-GACGAGAG---GC---CCAATCCATCACACTTAACGCTT--TGTGCAC-----------
droBia1 scf7180000302188:2122009-2122188 + AGA-GGAGATAAGTAAACAGA---T------CGGATTGGACTGGAGTGGATCGGAT------TGCATC------GGCC--TAACTGCTGTCTTGCAGGGC-C--GTAGAC---TTTGGTCCAAA---ATTT-AGTCTACGGTCGCTGCGATTCCG-GGCAGTTGAAA-GG---ATGCAA-GACGAGAG---AC---TCAGTCCACTAGACTTAACGCTT--TGTGCAC-----------
droTak1 scf7180000415438:753082-753217 - G---------------------------------------------TGGATCGGAT------GGCATC------TGCC--TAACTGCTGTCTTGCAGGGC-C--GTGGAC---TTTGGTCCAAA---ATTT-AGTCTATGGTCGCTGCGATTCCG-GGCAGTTGAAA-GG---ATGCCA-AATGAGAG---AC---CCA---------ACCTAACGCTT--TGTGCAC-----------
droEug1 scf7180000409554:3024279-3024455 - AAA-AGAGATAACTCAACAGG---T------CGGATTG-----GAGCGGATCGGAT------TGAATC------TGAT--TAACTGCTGTCTTGCAGCGC-T--GTAGAC---TGTGGTCCAAA---ATTT-AGTCTATAGTCGCTGCGATTCTG-GGCAGTTGTAA-GG---ATAAAAAGATGAGAG---GC---CCAAACCATCACACTTAACGCTT--TGTGCACC----------
dm3 chr2L:3067716-3067891 + dme_436 candidate-rescued AGA-AGAGATAAGTTAACAGA---T------TGGATTT-----GCGTCGATCGGAT------TGAATC------TGCC--TAACTGCTGTCTTGCAGGGC-T--GTAGGC---TTCGGTCCAAA---ATTA-AGTCTACAGTCTCTGCGATTCCG-GGCAGTTGAAA-TG---ATGCAA-GATGAGAG---GC---TCAGTCCATAACACTTAACGCTT--TGTGCACC----------
droSim2 2l:2946901-2947076 + dsi_32463 candidate AGA-AGAGATAAGTCAACAGA---T------TGGATTT-----GCGCCGATCGGCT------TGAATC------TGCC--TAACTGCTGTCTTGCAGGGC-T--GTAGGC---TTCGGTCCAAA---ATTT-AGTCTACAGTCGCTGCGATTCCG-GGCAGTTGAAA-TG---ATGCAA-GATGAGAG---GC---CCAGTCCATAACACTTAACGCTT--TGTGCACC----------
droSec2 scaffold_5:1224959-1225134 + dse_1854 candidate-rescued AGA-AGAGATAAGTCAACAGA---T------TGGATTT-----GCGTCGATCGGCT------TGAATC------TGCC--TAACTGCTGTCTTGCAGGGC-T--GTAGGC---TTCGGTCCAAA---ATTT-AGTCTACAGTCACTGCGATTCCG-GGCAGTTGAAA-TG---ATGCAA-GATGAGAG---GC---CCAGTCCATAACACTTAACGCTT--TGTGCACC----------
droYak3 2L:3063715-3063881 + dya_1801 candidate-rescued AGA-AGAGAT---------------------CGGATCG-----GCGTCGATCGGAT------TAAGTC------TGCC--TAACTGCTGTCTTGCAGGGC-T--GTAGGC---TTTGGTCCAAA---ATTT-AGTCTACAGTCGCTGCGATTCCG-GGCAGTTGAAA-TG---ATGCAA-GATGAAAGAGAGC---CCGGTCCATAACACTTAACGCTT--TGTGCACC----------
droEre2 scaffold_4929:3115459-3115621 + der_1527 candidate-rescued AGA-AGAGAT---------------------CGGATTG-----GCGTCAATCGGAT------TGAATC------TGCC--TAACTGCTGTCTTGCAGGGC-T--GTAGGC---TTCGGTCCAAA---ATTT-AGTCTACAGTCGCTGCGATTCCG-GGCAGTTGAAA-GG---ATGCAA-GATGAGAG---GC---CCAGTCCATGACACTTAACGCTT--TGTGCAC-----------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
ACA-AAAGATAAAAC---TAAT-C-TCGGATCGG--------------------ATGTTCCTTAAACC---------T--TAACTGCCGTCTTGCAGCGCCT--GTGGACG--ATAGGTCCAAA---ATTTCAGTCTACAGACGCTGCGATTCCG-GGCAGTTGAGT-GG---AT--------GGGAT---CCA--CCTTTAAATCACACTTAAAGCTA--TGTGCACA----------SizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
.......................................................................................................................................CTACAGACGCTGCGATTCCG-GGC................................................................................232347.00694115921161463033
.......................................................................................................................................CTACAGACGCTGCGATTCCG-GG.................................................................................222235.504710446010222000
.......................................................................................................................................CTACAGACGCTGCGATTCCG-G..................................................................................212122.002440227111014000
.......................................................................................................................................CTACAGACGCTGCGATTCCG-...................................................................................20245.0090035000649000
.......................................................................................CGTCTTGCAGCGCCT--GTGGAC.................................................................................................................................21228.505714712024000
.......................................................................................CGTCTTGCAGCGCCT--GTGGA..................................................................................................................................20226.005203900058000
........................................................................................................................................TACAGACGCTGCGATTCCG-GGC................................................................................22221.504304300000000
........................................................................................................................................TACAGACGCTGCGATTCCG-GG.................................................................................21214.002802800000000
........................................................................................................................................TACAGACGCTGCGATTCCG-G..................................................................................20213.002602400002000
.......................................................................................CGTCTTGCAGCGCCT--GTGG...................................................................................................................................1929.001801800000000
........................................................................................GTCTTGCAGCGCCT--GTGGAC.................................................................................................................................2028.501701403000000
.......................................................................................................................................CTACAGACGCTGCGATTCC.....................................................................................1927.001401201010000
.......................................................................................................................................CTACAGACGCTGCGATTCCG-GGCT...............................................................................2424.0081600100000
.......................................................................................................................................CTACAGACGCTGCGATTCCG-GGT................................................................................2323.5070700000000
......................................................................................................................................TCTACAGACGCTGCGATTCCG-GG.................................................................................2322.0040400000000
......................................................................................................................................TCTACAGACGCTGCGATTCCG-G..................................................................................2222.0040400000000
........................................................................................GTCTTGCAGCGCCT--GTGGA..................................................................................................................................1922.0040400000000
.......................................................................................................................................CTACAGACGCTGCGATTCCG-GGCA...............................................................................2422.0040120100000
.......................................................................................CGTCTTGCAGCGCCT--GTG....................................................................................................................................1822.0040400000000
..................................................................................ACTGCCGTCTTGCAGCGCCT--GT.....................................................................................................................................2221.5030000300000
...........................................................................................................................A---ATTTCAGTCTACAGACGCTGC...........................................................................................2221.5030000300000
.......................................................................................................................................CTACAGACGCTGCGATTCCG-GGCTT..............................................................................2521.5030300000000
.......................................................................................CGTCTTGCAGCGCCT--GTGGT..................................................................................................................................2021.5030300000000
.......................................................................................................................................CTACAGACGCTGCGATTCCG-GT.................................................................................2221.5030300000000
...........................................................................................................................................AGACGCTGCGATTCCG-GGCA...............................................................................2021.5030300000000
......................................................................................................................................................TTCCG-GGCAGTTGAGT-GG---AT--------GG......................................................2221.0020000000020
.........................................................................................................................AAA---ATTTCAGTCTACAGACGCTGC...........................................................................................2421.0020020000000
.................................................................................AACTGCCGTCTTGCAGCGCCT--GT.....................................................................................................................................2321.0020010100000
..........................................................................................................................................CAGACGCTGCGATTCCG-GGCA...............................................................................2121.0020010100000
.................................G--------------------ATGTTCCTTAAACC---------T--TAACTG.........................................................................................................................................................2221.0020110000000
...............................................................................................................................ATTTCAGTCTACAGACGCTGC...........................................................................................2121.0020100100000
.......................................................................................CGTCTTGCAGCGCCT--GTGGTT.................................................................................................................................2121.0020100001000
........................................................................................GTCTTGCAGCGCCT--GTGGACG--..............................................................................................................................2121.0020200000000
........................................................................................................................................TACAGACGCTGCGATTCCG-GGCT...............................................................................2321.0020200000000
.........................................................................................................................................ACAGACGCTGCGATTCCG-GGC................................................................................2121.0020200000000
...........................................................................................................................................AGACGCTGCGATTCCG-GG.................................................................................1821.0020100001000
..................................................................................................................................TCAGTCTACAGACGCTGCGATT.......................................................................................2221.0020200000000
........................................................................................GTCTTGCAGCGCCT--GTGG...................................................................................................................................1821.0020200000000
.......................................................................................................................................CTACAGACGCTGCGATTCT.....................................................................................1921.0020200000000
.......................................................................................CGTCTTGCAGCGCCT--GTGGAT.................................................................................................................................2121.0020200000000
.......................................................................................................................................CTACAGACGCTGCGATTCCG-GA.................................................................................2221.0020200000000
.......................................................................................CGTCTTGCAGCGCCT--GTGGACG--..............................................................................................................................2221.0020200000000
.......................................................................................................................................CTACAGACGCTGCGATTCCG-GGCC...............................................................................2421.0020200000000
........................................................................................................................................TACAGACGCTGCGATTCCG-...................................................................................1921.0020200000000
......................................................................................................................................TCTACAGACGCTGCGATTCCG-...................................................................................2121.0020000000002
...................................................................C---------T--TAACTGCCGTCTTGCAGCGCCT--GC.....................................................................................................................................2621.0020020000000
.......................................................................................CGTCTTGCAGCGCCT--GTGGACT--..............................................................................................................................2221.0020200000000
......................................................................................................................................TCTACAGACGCTGCGATTCCG-GGA................................................................................2420.5010100000000
...........................................................CCTTAAACC---------T--TAACTGCCGTC....................................................................................................................................................2120.5010001000000
.......................................................................................................................................CTACAGACGCTGCGATTC......................................................................................1820.5011000000000
............................................................................................................................................GACGCTGCGATTCCG-GGCA...............................................................................1920.5010000100000
..........................................................................................................................................CAGACGCTGCGATTCCG-GGC................................................................................2020.5010100000000
.................................................................................................................ATAGGTCCAAA---ATTTCAGTCTAC....................................................................................................2320.5010000100000
..........AAAAC---TAAT-C-TCGGATCGG--------------------ATG......................................................................................................................................................................................2220.5010100000000
..............................................................................................CAGCGCCT--GTGGACG--ATAGGT........................................................................................................................2120.5010000100000
........................................................................................................................................TACAGACGCTGCGATTCCG-GGT................................................................................2220.5010100000000
.......................................................................................................................................CTACAGACGCTGCGATTCCG-GGA................................................................................2320.5010100000000
..........AAAAC---TAAT-C-TCGGATCGG--------------------ATGTC....................................................................................................................................................................................2420.5010010000000
................................................................................................................................................................GTTGAGT-GG---AT--------GGGAT---CCA--CCTT.......................................2320.5010000100000
...........................................................................................TTGCAGCGCCT--GTGGACG--ATA...........................................................................................................................2120.5010100000000
......................................................................................CCGTCTTGCAGCGCCT--GTGGAC.................................................................................................................................2220.5010100000000
.......................................................................................................................................CTACAGACGCTGCGATTCCG-GC.................................................................................2220.5010100000000
...................AAT-C-TCGGATCGG--------------------ATGTTCCTTAAACC---------T--T..............................................................................................................................................................2920.5010010000000
........................................................................................................................................TACAGACGCTGCGATTCCG-GGCA...............................................................................2320.5010100000000
............................................................CTTAAACC---------T--TAACTGCCGTCTTGCAGC.............................................................................................................................................2720.5010010000000
........................................................................................................................................TACAGACGCTGCGATTCCG-GGCTT..............................................................................2420.5010100000000
.......................................................................................................................................CTACAGACGCTGCGATTCCG-GGTT...............................................................................2420.5010100000000
.................................................................................................................................TTCAGTCTACAGACGCTGCG..........................................................................................2020.5010100000000
.............................................................TTAAACC---------T--TAACTGCCGTCTTGCAGCGCC..........................................................................................................................................2920.5010010000000
....................................................................................................................................................GATTCCG-GGCAGTTGAGT-GG---AT--------GGG.....................................................2520.5010000100000
...............................................................AAACC---------T--TAACTGCCGTCTTGCAGC.............................................................................................................................................2420.5010010000000
........................................................................................GTCTTGCAGCGCCT--GTGGTT.................................................................................................................................2020.5010000001000
........ATAAAAC---TAAT-C-TCGGATCGG--------------------AC.......................................................................................................................................................................................2320.5010010000000
.............................ATCGG--------------------ATGTTCCTTAAACC---------T--TAACTGC........................................................................................................................................................2720.5010010000000
........................................................................................................................................................CCG-GGCAGTTGAGT-GG---AT--------G.......................................................1920.5010000010000
.........................................................................................TCTTGCAGCGCCT--GTGGAC.................................................................................................................................1920.5010100000000
.............................................................................................GCAGCGCCT--GTGGACG--ATAG..........................................................................................................................2020.5010000001000
................................................................................................................................................................GTTGAGT-GG---AT--------GGGAT---CCA--CCT........................................2220.5010000100000
..............................................................TAAACC---------T--TAACTGCCGTCTTGCAG..............................................................................................................................................2420.5010000100000
.......GATAAAAC---TAAT-C-TCGGATC...............................................................................................................................................................................................................2020.5010010000000
...............................................................................................................................................................AGTTGAGT-GG---AT--------GGGAT---CCA--CCTT.......................................2420.5010000100000
...........................................................................................TTGCAGCGCCT--GTGGACG--ATAG..........................................................................................................................2220.5010100000000
....................AT-C-TCGGATCGG--------------------ATGTTCCTTAAACC---------..................................................................................................................................................................2620.5010010000000
...............................................................................................................................ATTTCAGTCTACAGACGCTGCGATTCC.....................................................................................2720.5010100000000
.............................................................TTAAACC---------T--TAACTGCCGTCTTGCAGCGC...........................................................................................................................................2820.5010010000000
.......................................................................................CGTCTTGCAGCGCCT--GTGT...................................................................................................................................1920.5010100000000
.......................................................................................................................................CTACAGACGCTGCGATTCCG-GTTT...............................................................................2420.5010100000000
...................................................................................CTGCCGTCTTGCAGCGCCT--GT.....................................................................................................................................2120.5010100000000
........................................................................................................................................TACAGACGCTGCGATTCCG-GGTC...............................................................................2320.5010100000000
.........................................................................................................................AAA---ATTTCAGTCTACAGACGCTGCGA.........................................................................................2620.5010010000000
........................................................................................................................................................CCG-GGCAGTTGAGT-GG---AT--------GGG.....................................................2120.5010100000000
....................................................................................................................................................GATTCCG-GGCAGTTGAGT-GG---AT--------GG......................................................2420.5010100000000
.........................................................................................TCTTGCAGCGCCT--GTGGACG--ATAGG.........................................................................................................................2520.5010100000000
...................................................................................CTGCCGTCTTGCAGCGCCT--GTG....................................................................................................................................2220.5010100000000
.........................................................................................TCTTGCAGCGCCT--GTGGA..................................................................................................................................1820.5010100000000
.........................................................................................TCTTGCAGCGCCT--GTGGACG--..............................................................................................................................2020.5010100000000
......................................................................................................................................................TTCCG-GGCAGTTGAGT-GG---AT--------GGA.....................................................2320.5010100000000
.........................................................................................................................................ACAGACGCTGCGATTCCG-GG.................................................................................2020.5010100000000
........................................................................................................................................TACAGACGCTGCGATTCC.....................................................................................1820.5010100000000
......................................................................................................................................TCTACAGACGCTGCGATTCC.....................................................................................2020.5010100000000
....................................................................................................................................................GATTCCG-GGCAGTTGAGT-GG---AT--------........................................................2220.5010000100000
........................................................................................GTCTTGCAGCGCCT--GTGGACC--..............................................................................................................................2120.5010100000000
...........................................................................................................................................AGACGCTGCGATTCCG-GGCAGT.............................................................................2220.5010010000000
...........................................................................................TTGCAGCGCCT--GTGGACG--ATAGG.........................................................................................................................2320.5010000001000
droPer2
ACA-AAAGATAAAAC---TAAT-C-TCGGATCGG--------------------ATGTTCCTTAAACC---------T--TAACTGCCGTCTTGCAGCGCCT--GTGGACG--ATAGGTCCAAA---ATTTCAGTCTACAGACGCTGCGATTCCG-GGCAGTTGAGT-GG---AT--------GGGAT---CCA--CCTTTAAATCACACTTAAAGCTA--TGTGCACA----------SizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
.......................................................................................................................................CTACAGACGCTGCGATTCCG-GG.................................................................................22163.006304302414
.......................................................................................................................................CTACAGACGCTGCGATTCCG-GGC................................................................................23162.0062123021413
.......................................................................................................................................CTACAGACGCTGCGATTCCG-G..................................................................................21152.00520381067
.......................................................................................................................................CTACAGACGCTGCGATTCCG-...................................................................................20137.00371502920
.......................................................................................CGTCTTGCAGCGCCT--GTGGAC.................................................................................................................................21125.0025150478
..........AAAAC---TAAT-C-TCGGATCGG--------------------AT.......................................................................................................................................................................................21119.00191900000
.......................................................................................CGTCTTGCAGCGCCT--GTGGA..................................................................................................................................20114.0014040154
............AAC---TAAT-C-TCGGATCGG--------------------AT.......................................................................................................................................................................................19110.00101000000
...........AAAC---TAAT-C-TCGGATCGG--------------------AT.......................................................................................................................................................................................20110.0010900100
..........................................................................................................................................CAGACGCTGCGATTCCG-GGC................................................................................2017.007700000
.......................................................................................................................................CTACAGACGCTGCGATTCCG-GGCA...............................................................................2417.007601000
...........................................................................................................................................AGACGCTGCGATTCCG-GGC................................................................................1916.006600000
........................................................................................GTCTTGCAGCGCCT--GTGGAC.................................................................................................................................2016.006020004
.......................................................................................................................................CTACAGACGCTGCGATTCC.....................................................................................1915.005010121
........ATAAAAC---TAAT-C-TCGGAT................................................................................................................................................................................................................1815.005500000
.........TAAAAC---TAAT-C-TCGGATCGG--------------------AT.......................................................................................................................................................................................2215.005500000
........................................................................................................................................TACAGACGCTGCGATTCCG-GG.................................................................................2115.005050000
............................................................................................................................................GACGCTGCGATTCCG-GGC................................................................................1815.005500000
.......GATAAAAC---TAAT-C-TCGGATCGG--------------------AT.......................................................................................................................................................................................2414.004400000
......................................................................................................................................TCTACAGACGCTGCGATTCCG-...................................................................................2114.004020002
.............AC---TAAT-C-TCGGATCGG--------------------AT.......................................................................................................................................................................................1813.003300000
........................................................................................................................................TACAGACGCTGCGATTCCG-G..................................................................................2013.003020001
........................................................................................GTCTTGCAGCGCCT--GTGGA..................................................................................................................................1913.003000012
.......GATAAAAC---TAAT-C-TCGGAT................................................................................................................................................................................................................1913.003300000
.......................................................................................................................................CTACAGACGCTGCGATTCCG-GGA................................................................................2313.003000003
........ATAAAAC---TAAT-C-TCGGATCGG--------------------AT.......................................................................................................................................................................................2313.003300000
..........AAAAC---TAAT-C-TCGGATCGG--------------------ATGTTC...................................................................................................................................................................................2513.003300000
...........................................................CCTTAAACC---------T--TAACTGCCGT.....................................................................................................................................................2013.003300000
.......................................................................................CGTCTTGCAGCGCCT--GTGGT..................................................................................................................................2013.003000012
.......................................................................................................................CCAAA---ATTTCAGTCTACAGAC................................................................................................2112.002200000
....AAAGATAAAAC---TAAT-C-TCGGATCGG--------------------AT.......................................................................................................................................................................................2712.002200000
..................................................................CC---------T--TAACTGCCGTCTTGCAGC.............................................................................................................................................2112.002200000
...................AAT-C-TCGGATCGG--------------------ATGTTC...................................................................................................................................................................................1912.002200000
........................................................................................................................................TACAGACGCTGCGATTCCG-GGC................................................................................2212.002010001
.......................................................................................CGTCTTGCAGCGCCT--GTG....................................................................................................................................1812.002020000
...........AAAC---TAAT-C-TCGGATCGG--------------------.........................................................................................................................................................................................1812.002200000
.......GATAAAAC---TAAT-C-TCGGATCGG--------------------ATGTTC...................................................................................................................................................................................2812.002200000
..........AAAAC---TAAT-C-TCGGATCGG--------------------.........................................................................................................................................................................................1912.002200000
....................AT-C-TCGGATCGG--------------------ATGTTC...................................................................................................................................................................................1812.002200000
......AGATAAAAC---TAAT-C-TCGGATCGG--------------------AT.......................................................................................................................................................................................2512.002200000
...................................................................................CTGCCGTCTTGCAGCGCCT--GTGGAC.................................................................................................................................2512.002200000
............................................................CTTAAACC---------T--TAACTGCCGTCTTGC................................................................................................................................................2412.002101000
.....................................................................................................................................................ATTCCG-GGCAGTTGAGT-GG---AT--------GG......................................................2311.001000001
................................................................AACC---------T--TAACTGCCGTCTTGCAGC.............................................................................................................................................2311.001001000
.......................................................................................................................................CTACAGACGCTGCGATTTT.....................................................................................1921.002000002
.................................................................................AACTGCCGTCTTGCAGCGCCT--GT.....................................................................................................................................2311.001001000
...................................................................C---------T--TAACTGCCGTCTTGCAGCGCCT--GC.....................................................................................................................................2611.001100000
..........AAAAC---TAAT-C-TCGGATCGG--------------------ATGTT....................................................................................................................................................................................2411.001100000
...................................................................C---------T--TAACTGCCGTCTTGCA...............................................................................................................................................1811.001001000
....................AT-C-TCGGATCGG--------------------ATGTTCC..................................................................................................................................................................................1911.001100000
..................................................................CC---------T--TAACTGCCGTCTTGCAGCGCCT--GT.....................................................................................................................................2711.001001000
........................................................................................................................................TACAGACGCTGCGATTCCG-T..................................................................................2011.001010000
.................................................................................................................................TTCAGTCTACAGACGCTGC...........................................................................................1911.001100000
...................AAT-C-TCGGATCGG--------------------ATGTTCC..................................................................................................................................................................................2011.001100000
........ATAAAAC---TAAT-C-TCGGAC................................................................................................................................................................................................................1811.001100000
.......................................................................................................................................CTACAGACGCTGCGATTCCG-GGT................................................................................2311.001010000
...................AAT-C-TCGGATCGG--------------------ATGTT....................................................................................................................................................................................1811.001100000
.............................................................................................................CG--ATAGGTCCAAA---ATTTCAGT........................................................................................................2111.001001000
.......................................................................................CGTCTTGCAGCGCCT--GTGGAA.................................................................................................................................2111.001010000
.......................................................................................................................................CTACAGACGCTGCGATTC......................................................................................1811.001001000
..................................................................................ACTGCCGTCTTGCAGCGCCT--GTGGAC.................................................................................................................................2611.001100000
....................................................................................TGCCGTCTTGCAGCGCCT--.......................................................................................................................................1811.001010000
..................................................................CC---------T--TAACTGCCGTCTTGC................................................................................................................................................1811.001100000
.....................................................................................................................................GTCTACAGACGCTGCGATTCCG-GGCAGTT............................................................................2911.001100000
........ATAAAAC---TAAT-C-TCGGATCGG--------------------ATGTT....................................................................................................................................................................................2611.001100000
....................AT-C-TCGGATCGG--------------------ATGTTCCTTAAACC---------T--...............................................................................................................................................................2711.001100000
..............C---TAAT-C-TCGGATCGG--------------------ATGTTCCTTAAAC............................................................................................................................................................................2811.001100000
...................................................................................CTGCCGTCTTGCAGCGCCT--GT.....................................................................................................................................2111.001001000
........................................................................................GTCTTGCAGCGCCT--GTGT...................................................................................................................................1811.001000001
.......................................................................................................................................CTACAGACGCTGCGATTCCG-GGCT...............................................................................2411.001010000
.......................................................................................CGTCTTGCAGCGCCT--GTGT...................................................................................................................................1911.001000001
..................................................................................................................................TCAGTCTACAGACGCTGCGATTCCG-GGC................................................................................2811.001100000
........ATAAAAC---TAAT-C-TCGGATCGG--------------------G........................................................................................................................................................................................2211.001100000
.......................................................................................................................................CTACAGACGCTGCGATTCCG-GT.................................................................................2211.001010000
..................................................................................ACTGCCGTCTTGCAGCGCCT--GT.....................................................................................................................................2211.001001000
..........................................................................................CTTGCAGCGCCT--GTGGACG--AT............................................................................................................................2111.001000010
............AAC---TAAT-C-TCGGATCGG--------------------AC.......................................................................................................................................................................................1911.001100000
......................................................................................................................................TCTACAGACGCTGCGATTCCG-GG.................................................................................2311.001010000
.......................................................................................CGTCTTGCAGCGCCT--GTGG...................................................................................................................................1911.001010000
...........................................................................................TTGCAGCGCCT--GTGGACG--AT............................................................................................................................2011.001000010
................................................................AACC---------T--TAACTGCCGTCTTGCAG..............................................................................................................................................2211.001001000
...................................................................C---------T--TAACTGCCGTCTTGCAGCGCCT--GT.....................................................................................................................................2611.001100000
...........AAAC---TAAT-C-TCGGATCGG--------------------ATGT.....................................................................................................................................................................................2211.001100000
droWil2
ATA-CATGATATATCCTCCAAA--TGTGAATTAGATAT-----AAGTTATATCCA-------GTGATC------GATT--TAATTGCCGTCTTGCAGGGTCTTTGTAAAGAATCCAGGTCCAAATT-AAAT-TCTTTATAGATCCTGCGATTCTG-GGCAATTGAAT-GA-----------------------------------CACACTGAA-------------------------SizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
.........................................................................................................................................ATAGATCCTGCGATTCTG-GGC................................................................................21139.0039301350
........................................................................................................................................TATAGATCCTGCGATTCTG-GGC................................................................................22116.0016100150
.........................................................................................................................................ATAGATCCTGCGATTCTG-GGCA...............................................................................22116.001650290
.......................................................................................................................................TTATAGATCCTGCGATTCTG-GGC................................................................................23111.001140061
.........................................................................................................................................ATAGATCCTGCGATTCTG-GGCAATT............................................................................25111.0011000110
........................................................................................................................................TATAGATCCTGCGATTCTG-GGCAATT............................................................................2619.00900180
.........................................................................................................................................ATAGATCCTGCGATTCTG-GGCAAT.............................................................................2418.00810061
........................................................................................................................................TATAGATCCTGCGATTCTG-GGCAAT.............................................................................2518.00811060
.....................................................................................................................................CTTTATAGATCCTGCGATTCTG-GGC................................................................................2517.00700070
..................................................................................ATTGCCGTCTTGCAGGGTCTTTGTAAA..................................................................................................................................2717.00700160
........................................................................................................................................TATAGATCCTGCGATTCTG-GGCA...............................................................................2317.00760010
....................................AT-----AAGTTATATCCA-------GTGATC------GATT--TA.............................................................................................................................................................2615.00500050
.............................................................................T--TAATTGCCGTCTTGCAGG.............................................................................................................................................1915.00500050
..........................................................................GATT--TAATTGCCGTCTTGCAGG.............................................................................................................................................2215.00500050
..................................................................................................GTCTTTGTAAAGAATCCAGGTC.......................................................................................................................2215.00500140
............................................................................................................................................GATCCTGCGATTCTG-GGC................................................................................1814.00410030
.......................................................................................................................................TTATAGATCCTGCGATTCTG-GGCAATT............................................................................2714.00400040
......................................................................................................................................TTTATAGATCCTGCGATTCTG-GGC................................................................................2414.00400040
...................................................................C------GATT--TAATTGCCGTCTTGCA...............................................................................................................................................2114.00400040
..................................................................................ATTGCCGTCTTGCAGGGT...........................................................................................................................................1814.00400040
...................................................................C------GATT--TAATTGCCGTCTTGC................................................................................................................................................2014.00400040
...................................................................C------GATT--TAATTGCCGTCTTGCAGGGT...........................................................................................................................................2514.00400040
............................................................................................................................................GATCCTGCGATTCTG-GGCA...............................................................................1913.00300030
....................................................................................TGCCGTCTTGCAGGGTCTTTGTAAAGA................................................................................................................................2713.00300030
.......................................................................................CGTCTTGCAGGGTCTTTGTAAAGA................................................................................................................................2413.00300030
..................................................................................ATTGCCGTCTTGCAGGGTC..........................................................................................................................................1913.00300030
...................................................................C------GATT--TAATTGCCGTCTTGCAGGGTC..........................................................................................................................................2613.00300030
....................................AT-----AAGTTATATCCA-------GTGATC------GATT--T..............................................................................................................................................................2513.00300030
...........................................................................ATT--TAATTGCCGTCTTGCAGG.............................................................................................................................................2113.00300030
..................................................................................ATTGCCGTCTTGCAGGGTCTTTGTAA...................................................................................................................................2613.00300030
..................................................................................ATTGCCGTCTTGCAGGGTCTTTGTA....................................................................................................................................2513.00300120
................................................ATATCCA-------GTGATC------GATT--TA.............................................................................................................................................................1913.00300030
............ATCCTCCAAA--TGTGAATTAGAT...........................................................................................................................................................................................................2213.00300030
....................................AT-----AAGTTATATCCA-------GTGATC------.....................................................................................................................................................................2013.00300030
...........................GAATTAGATAT-----AAGTTAT.............................................................................................................................................................................................1812.00200020
............................................................................TT--TAATTGCCGTCTTGCAGG.............................................................................................................................................2012.00200020
....................................................................................................................................................GATTCTG-GGCAATTGAAT-GA-----------------------------------CACACT............................2612.00200020
..................................................................................................GTCTTTGTAAAGAATCCAGGTCC......................................................................................................................2312.00200020
............................................................................................................................................GATCCTGCGATTCTG-GGCAAT.............................................................................2112.00200020
...........................................AAGTTATATCCA-------GTGATC------GATT--TA.............................................................................................................................................................2412.00200020
.............................................GTTATATCCA-------GTGATC------GATT--TA.............................................................................................................................................................2212.00200020
....................................................................................................CTTTGTAAAGAATCCAGGTC.......................................................................................................................2012.00200020
.........................................................................................................................................ATAGATCCTGCGATTCTG-GGCAA..............................................................................2312.00201001
.....................................................................................GCCGTCTTGCAGGGTCTTTGTAAAGA................................................................................................................................2612.00200020
...............................................................................................................ATCCAGGTCCAAATT-AAAT-...........................................................................................................1912.00200020
..................................................................................ATTGCCGTCTTGCAGGGTCTTTGTAAAG.................................................................................................................................2812.00200200
....................................AT-----AAGTTATATCCA-------GTGAT............................................................................................................................................................................1912.00200020
......................................................................................................................................TTTATAGATCCTGCGATTCTG-G..................................................................................2212.00202000
.......................................................................................................................................TTATAGATCCTGCGATTCTG-GGCA...............................................................................2412.00200020
..........ATATCCTCCAAA--TGTGAATTAGAT...........................................................................................................................................................................................................2412.00200020
.........................GTGAATTAGATAT-----AAGTTAT.............................................................................................................................................................................................2012.00200020
....................................................................................................................................................GATTCTG-GGCAATTGAAT-.......................................................................1811.00100010
......................................................................................................................................................TTCTG-GGCAATTGAAT-GA-----------------------------------CACACT............................2411.00100010
...................................................................................TTGCCGTCTTGCAGGGTCTTTGTAAAG.................................................................................................................................2711.00100010
..................................ATAT-----AAGTTATATCCA-------GTGATC------GATT--TA.............................................................................................................................................................2811.00100010
.....................................................CA-------GTGATC------GATT--TAATTGCC.......................................................................................................................................................2011.00100010
....................................................................................................................................TCTTTATAGATCCTGCGATTCTG-GGC................................................................................2611.00100010
...........................................................................ATT--TAATTGCCGTCTTGC................................................................................................................................................1811.00100010
.........................................................................................................................................ATAGATCCTGCGATTCTG-GGCAATTGA..........................................................................2711.00100010
......................................................................................................................................TTTATAGATCCTGCGATTCTG-GGCA...............................................................................2511.00110000
..............CCTCCAAA--TGTGAATTAGATAT-----AAGT................................................................................................................................................................................................2611.00100010
........................TGTGAATTAGATAT-----AAGTTAT.............................................................................................................................................................................................2111.00100010
....................................................................................................................................................GATTCTG-GGCAATTGAAT-GA-----------------------------------CAC...............................2311.00100010
.....................................................................................GCCGTCTTGCAGGGTCTTTGTAAA..................................................................................................................................2411.00100010
...............................................................................................................ATCCAGGTCCAAATT-AAAT-TC.........................................................................................................2111.00100010
.................................................................................................................................AT-TCTTTATAGATCCTGCGATT.......................................................................................2211.00100010
....................................................................................TGCCGTCTTGCAGGGTCTTTGTAAAG.................................................................................................................................2611.00110000
.............................................................................................................................T-AAAT-TCTTTATAGATCCTGC...........................................................................................2111.00100010
.................................................................ATC------GATT--TAATTGCCGTCTTGCAGG.............................................................................................................................................2511.00100010
....................................................................................................CTTTGTAAAGAATCCAGGTCCA.....................................................................................................................2211.00100010
................................................................................................................................AAT-TCTTTATAGATCCTGCGATT.......................................................................................2311.00100010
...............................................TATATCCA-------GTGATC------GATT--TAA............................................................................................................................................................2111.00100010
..........................................................................GATT--TAATTGCCGTCTTGCAGGGT...........................................................................................................................................2411.00100100
...................................TAT-----AAGTTATATCCA-------GTGATC------.....................................................................................................................................................................2111.00100010
...........................................................................ATT--TAATTGCCGTCTTGCAGGGTC..........................................................................................................................................2411.00100010
...........TATCCTCCAAA--TGTGAATTAGA............................................................................................................................................................................................................2211.00101000
...................................................................C------GATT--TAATTGCCGTCTTGCAGG.............................................................................................................................................2311.00100010
............................................................................................................................................GATCCTGCGATTCTG-GGCAA..............................................................................2011.00100010
...................................................................................TTGCCGTCTTGCAGGGTCTTTGTAAAGA................................................................................................................................2811.00100100
....................................................CCA-------GTGATC------GATT--TAATTGC........................................................................................................................................................2011.00100010
........ATATATCCTCCAAA--TGTGAAT................................................................................................................................................................................................................2111.00100001
................................................................................TAATTGCCGTCTTGCAGG.............................................................................................................................................1811.00100010
....................................................................................TGCCGTCTTGCAGGGTCTTTGTAAA..................................................................................................................................2511.00100010
............................................................................................................................................GATCCTGCGATTCTG-GGCAATT............................................................................2211.00100010
....................................................................................................................................................GATTCTG-GGCAATTGAAT-G......................................................................1911.00100010
.............................................................................................................................................ATCCTGCGATTCTG-GGCAATT............................................................................2111.00100100
................................................................................TAATTGCCGTCTTGCAGGGT...........................................................................................................................................2011.00100010
.........................................................................................................................................ATAGATCCTGCGATTCTG-...................................................................................1811.00100010
....................................AT-----AAGTTATATCCA-------GTGATC------GAT..................................................................................................................................................................2311.00100010
..................................................................TC------GATT--TAATTGCCGTCTTGCA...............................................................................................................................................2211.00100010
...................................TAT-----AAGTTATATCCA-------GTGATC------GATT--TA.............................................................................................................................................................2711.00100010
...........................................................................................................................................AGATCCTGCGATTCTG-GGCA...............................................................................2011.00100010
..............................................TTATATCCA-------GTGATC------GATT--TA.............................................................................................................................................................2111.00100010
....................................AT-----AAGTTATATCCA-------GTGATC------GA...................................................................................................................................................................2211.00100010
.TA-CATGATATATCCTCCAAA--TGT....................................................................................................................................................................................................................2311.00100010
..........ATATCCTCCAAA--TGTGAA.................................................................................................................................................................................................................1811.00100010
....................................................................................TGCCGTCTTGCAGGGTCTTTG......................................................................................................................................2111.00101000
...............................................................................................................................................................AATTGAAT-GA-----------------------------------CACACTGA..........................1811.00100010
........ATATATCCTCCAAA--TGTGAATT...............................................................................................................................................................................................................2211.00100010
.............................................................................................................GAATCCAGGTCCAAATT-AAAT-...........................................................................................................2111.00100010
...............................................TATATCCA-------GTGATC------GATT--TA.............................................................................................................................................................2011.00100010
...........................................AAGTTATATCCA-------GTGATC------G....................................................................................................................................................................1911.00100010
.......................................................................................................................................TTATAGATCCTGCGATTCTG-GG.................................................................................2211.00110000
..................................................................................ATTGCCGTCTTGCAGGGTCTTT.......................................................................................................................................2211.00100010
..............................................................................................................AATCCAGGTCCAAATT-AAAT-TCT........................................................................................................2311.00100010
..........................................................................GATT--TAATTGCCGTCTTGCAGGGTC..........................................................................................................................................2511.00100010
...........................................AAGTTATATCCA-------GTGATC------.....................................................................................................................................................................1811.00100010
...........................................................................................................................................AGATCCTGCGATTCTG-GGC................................................................................1911.00100010
........................................................................................................................................TATAGATCCTGCGATTCTG-GGCC...............................................................................2311.00110000
......................................................................................................................................TTTATAGATCCTGCGATTCTG-GGCAAT.............................................................................2711.00100010
.................................................................................AATTGCCGTCTTGCAGGGT...........................................................................................................................................1911.00100010
.....................................................................................................TTTGTAAAGAATCCAGGTCCA.....................................................................................................................2111.00100010
.......................................................................................................................................TTATAGATCCTGCGATTCTG-...................................................................................2011.00101000
............................................................................................TGCAGGGTCTTTGTAAAGA................................................................................................................................1911.00101000
........ATATATCCTCCAAA--TGTGAATTAGAT...........................................................................................................................................................................................................2611.00101000
...............................................................................................................................AAAT-TCTTTATAGATCCTGCGATTCTG-...................................................................................2711.00100010
.....................................................................................................................................CTTTATAGATCCTGCGATTCTG-GGCA...............................................................................2611.00110000
...................................................................................TTGCCGTCTTGCAGGGTCTTTGTAAA..................................................................................................................................2611.00100010
...................................TAT-----AAGTTATATCCA-------GTGAT............................................................................................................................................................................2011.00100010
..................................................ATCCA-------GTGATC------GATT--TAA............................................................................................................................................................1811.00100010
.........................................................................................................................................ATAGATCCTGCGATTCTG-GGCAATTG...........................................................................2611.00100010
.................................................TATCCA-------GTGATC------GATT--TA.............................................................................................................................................................1811.00100010
..A-CATGATATATCCTCCAAA--TGT....................................................................................................................................................................................................................2211.00100010
.....ATGATATATCCTCCAAA--TGTGAAT................................................................................................................................................................................................................2411.00100010
.......................................................................................................................................TTATAGATCCTGCGATTC......................................................................................1811.00110000
............ATCCTCCAAA--TGTGAATTAGATA..........................................................................................................................................................................................................2311.00100010
..........ATATCCTCCAAA--TGTGAATTAGA............................................................................................................................................................................................................2311.00100010
................................................................................TAATTGCCGTCTTGCAGGGTC..........................................................................................................................................2111.00100100
...........................................................................................................................................AGATCCTGCGATTCTG-GGCAATT............................................................................2311.00100010
droVir3
AGT-CTATGTA----------------------------------------------------------------ATG--TAACTGCCGTCTTGCAACGCCT--GTGGATA-CAAAGGTCCAAA---AATT-AATCCACACGAGTTGCGATTCTG-GGCAGTTGA---------------------------------------TTTTACTAAAATCTT--TATGCACA----------SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
............................................................................................TGCAACGCCT--GTGGATA-CA.............................................................................................................................1916.0060000000000000000000000000000000000000000000000000000000000000000000001014000000
......................................................................................................................................TCCACACGAGTTGCGATTCTG-GGCAGT.............................................................................2714.0040000000000000000000000010010000000000000000000000000000000000010000010000000000
...............................................................................................................................................GTTGCGATTCTG-GGCAGTT............................................................................1914.0040001000000000000000000100000020000000000000000000000000000000000000000000000000
.............................................................................G--TAACTGCCGTCTTGCAACGCCT--.......................................................................................................................................2314.0040000000000000010000001000000000000000000000000000000000000000000000000000200000
............................................................................................TGCAACGCCT--GTGGATA-C..............................................................................................................................1814.0040000000000000000000000100000000000000000000000000000000000000000000020100000000
..................................................................................ACTGCCGTCTTGCAACGCCT--GT.....................................................................................................................................2213.0030000000000000000000000100000000000000000000000000000000000000000000002000000000
...........................................................................................................................................ACGAGTTGCGATTCTG-GGCAGT.............................................................................2213.0032000000000000000000000000000000000000000000000000000000000010000000000000000000
...........................................................................................TTGCAACGCCT--GTGGATA-CAAAGGTCC......................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000012000000
.........................................................................................................................................ACACGAGTTGCGATTCTG-GGCAGT.............................................................................2413.0030000000000000000000000000000000000000000000000000000000000010000000001010000000
.................................................................................AACTGCCGTCTTGCAACGCCT--GT.....................................................................................................................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000030000000
..........A----------------------------------------------------------------ATG--TAACTGCCGTCTTGCAACGCCT--.......................................................................................................................................2613.0030110000000000000000000000000000000000000000000000000000000010000000000000000000
..........................................................................................................................................CACGAGTTGCGATTCTG-GGC................................................................................2013.0030002000000000000000000000000000000000000000000000000000000010000000000000000000
............................................................................................TGCAACGCCT--GTGGATA-CAAAGGTCCA.....................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000300000
...........................................................................................................................................ACGAGTTGCGATTCTG-GGC................................................................................1912.0020001000100000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................TCCACACGAGTTGCGATTCTG-GGC................................................................................2412.0020001000000000000000000000000000000000000000000000000000000000001000000000000000
.......................................................................................CGTCTTGCAACGCCT--GTGGAT.................................................................................................................................2112.0020000000000000000000000000000000100000000000000000000000000000100000000000000000
.....................................................................................................................................ATCCACACGAGTTGCGATTCTG-GGC................................................................................2512.0020002000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................CGTCTTGCAACGCCT--GTGGA..................................................................................................................................2012.0020000000000000000100000000000000100000000000000000000000000000000000000000000000
.............................................................................G--TAACTGCCGTCTTGCAACGCCT--GT.....................................................................................................................................2512.0020011000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................TTGCAACGCCT--GTGGATA-...............................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000200000000
..........................................................................................................................................CACGAGTTGCGATTCTG-GGCAGT.............................................................................2312.0020001000000000000000000000000000000000000000000000000000000000000000000001000000
.................................................................................AACTGCCGTCTTGCAACGCCT--.......................................................................................................................................2112.0020001000000000000000000000000010000000000000000000000000000000000000000000000000
.................................................................................................................................TT-AATCCACACGAGTTGCGATTCTG-GGC................................................................................2812.0020002000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................AATCCACACGAGTTGCGATTCTG-GGCA...............................................................................2712.0020001000000000000001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................GAGTTGCGATTCTG-GGCA...............................................................................1812.0020001000000000000000000000000010000000000000000000000000000000000000000000000000
...........................................................................................................................................ACGAGTTGCGATTCTG-GGCAGTT............................................................................2312.0020001000000000000000000000000000000000000000000000000000000010000000000000000000
................................................................................TAACTGCCGTCTTGCAACGCCT--.......................................................................................................................................2212.0020100000000000000000000000000000000000000000000000000000000000000000000010000000
..................................................................................................................................T-AATCCACACGAGTTGCGATTCTG-GG.................................................................................2611.0010000000000000000000000000001000000000000000000000000000000000000000000000000000
..................................................................................................................................T-AATCCACACGAGTTGCGA.........................................................................................1911.0010000000000000001000000000000000000000000000000000000000000000000000000000000000
.......TGTA----------------------------------------------------------------ATG--TAACTGCCGTCTTGCAACGCC..........................................................................................................................................2811.0010000000000000000000000000000000000000010000000000000000000000000000000000000000
..........A----------------------------------------------------------------ATG--TAACTGCCGTCTTGC................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000010000000000000000000
.........................................................................................................................................ACACGAGTTGCGATTCTG-GGC................................................................................2111.0010000000000000000000000000000000000000000000000000000000000010000000000000000000
.............................................................................G--TAACTGCCGTCTTGCAAC.............................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000010000000
...............................................................................................................................AATT-AATCCACACGAGTTGCG..........................................................................................2111.0010000000000000000000001000000000000000000000000000000000000000000000000000000000
.............................................................................G--TAACTGCCGTCTTGCAACGCC..........................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000100000
...........................................................................ATG--TAACTGCCGTCTTGCA...............................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000010000000000000000000
...........................................................................................................................A---AATT-AATCCACACGAGTTGCGATTCT.....................................................................................2711.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
....CTATGTA----------------------------------------------------------------ATG--TAACTGCCGTCTTGC................................................................................................................................................2511.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................ACGAGTTGCGATTCTG-GGCAG..............................................................................2111.0010000000000000000000000000000000000000000000000000000000000010000000000000000000
....................................................................................................................................................GATTCTG-GGCAGTTGA---------------------------------------TTT................................1911.0010000000001000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................TCTTGCAACGCCT--GTGGATA-CAAAGGTC.......................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................................................................................................................................GCGATTCTG-GGCAGTTGA---------------------------------------TTT................................2111.0010000000000000000010000000000000000000000000000000000000000000000000000000000000
....CTATGTA----------------------------------------------------------------ATG--TAACTGCCGTC....................................................................................................................................................2111.0010000000000000000010000000000000000000000000000000000000000000000000000000000000
...........................................................................................TTGCAACGCCT--GTGGATA-CAAAGGTCCA.....................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000001000000
............................................................................................................ATA-CAAAGGTCCAAA---AATT-AATC.......................................................................................................2311.0010000000000000001000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................GATTCTG-GGCAGTTGA---------------------------------------TTTTACTAAAA........................2711.0010000000000000000000000000000100000000000000000000000000000000000000000000000000
.......................................................................................................................................CCACACGAGTTGCGATTCTG-GGC................................................................................2311.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................T-AATCCACACGAGTTGCGATTCTG-GGC................................................................................2711.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................A---AATT-AATCCACACGAGTT.............................................................................................1911.0010000000000000000000001000000000000000000000000000000000000000000000000000000000
................................................................................................................................ATT-AATCCACACGAGTTGCGATTCTG-GGC................................................................................2911.0010000000000000000000000000000000000000000000000000000000000010000000000000000000
...............................................................................................AACGCCT--GTGGATA-CAAAGG.........................................................................................................................2011.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................ATA-CAAAGGTCCAAA---AATT-AATCCA.....................................................................................................2511.0010000000000000000100000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................AATT-AATCCACACGAGTTGC...........................................................................................2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000
.................................................................................................................................................TGCGATTCTG-GGCAGTTG...........................................................................1811.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
...........................................................................ATG--TAACTGCCGTCTTGCAAC.............................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000100000000000000000
..................................................................................ACTGCCGTCTTGCAACGCCT--GTGG...................................................................................................................................2411.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................TTGCAACGCCT--GTGGATA-CAAAGGTCA......................................................................................................................2711.0010000000000000000000000000010000000000000000000000000000000000000000000000000000
...........................................................................................TTGCAACGCCT--GTGGATA-C..............................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010
.....................................................................................................................................ATCCACACGAGTTGCGATTCT.....................................................................................2111.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
.......................................................................................CGTCTTGCAACGCCT--GTG....................................................................................................................................1811.0010000000000000000010000000000000000000000000000000000000000000000000000000000000
...................................................................................CTGCCGTCTTGCAACGCCT--GT.....................................................................................................................................2111.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................TCCACACGAGTTGCGATTCTG-GGCAG..............................................................................2611.0010000000000000000000000010000000000000000000000000000000000000000000000000000000
........................................................................................................................................CACACGAGTTGCGATTCTG-...................................................................................1911.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
..........A----------------------------------------------------------------ATG--TAACTGCCGTCTTGCAA..............................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000100000000000000000
.................................................................................................................................TT-AATCCACACGAGTTGCG..........................................................................................1911.0010000000000000000001000000000000000000000000000000000000000000000000000000000000
................................................................................................ACGCCT--GTGGATA-CAAAGGTCCAA....................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000100000
............................................................................TG--TAACTGCCGTCTTGCAACGCC..........................................................................................................................................2311.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
........GTA----------------------------------------------------------------ATG--TAACTGCCGTCTTGC................................................................................................................................................2111.0010000000000000000010000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................CACACGAGTTGCGATTCTG-GGCA...............................................................................2311.0010000000000000000010000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................CACGAGTTGCGATTCTG-GGCA...............................................................................2111.0010000000000000000000000000000000000000000000000000000000000010000000000000000000
....................................................................................................................................AATCCACACGAGTTGCGATTC......................................................................................2111.0011000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................TCCACACGAGTTGCGATTC......................................................................................1911.0011000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................CAAA---AATT-AATCCACACGAGTTGC...........................................................................................2411.0010000000000000000000001000000000000000000000000000000000000000000000000000000000
.......................................................................................CGTCTTGCAACGCCT--GTGGATA-...............................................................................................................................2211.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
................................................................................................................................................TTGCGATTCTG-GGCAGTTGA---------------------------------------TTC................................2311.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
.................................................................................AACTGCCGTCTTGCAACGCCT--GTGG...................................................................................................................................2511.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
.......TGTA----------------------------------------------------------------ATG--TAACTGCCGTCTTGCAACG............................................................................................................................................2611.0010000000000000000000000000001000000000000000000000000000000000000000000000000000
.................................................................................................................................................TGCGATTCTG-GGCAGTTGA---------------------------------------TT.................................2111.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
................................................................................................................................................TTGCGATTCTG-GGCAGTTGA---------------------------------------TTTTAC.............................2611.0010000001000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................TCTG-GGCAGTTGA---------------------------------------TTTTACT............................2011.0010000000000000000001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................AGTTGCGATTCTG-GGCAGTT............................................................................2011.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................ATG--TAACTGCCGTCTTGCAACGCCT--GTGG...................................................................................................................................2911.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................G--TAACTGCCGTCTTGCAACGC...........................................................................................................................................2111.0010000000000000000010000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................AATCCACACGAGTTGCGATTCT.....................................................................................2211.0010000000000000000010000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................TT-AATCCACACGAGTTGCGATTCT.....................................................................................2411.0010000000000000001000000000000000000000000000000000000000000000000000000000000000
............................................................................TG--TAACTGCCGTCTTGCAACGCCT--.......................................................................................................................................2411.0010000000000000010000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................TG-GGCAGTTGA---------------------------------------TTTTACTAAAATCT.....................2511.0010000000000000000000000000010000000000000000000000000000000000000000000000000000
AGT-CTATGTA----------------------------------------------------------------ATG--TAACTGCC.......................................................................................................................................................2111.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................CCAAA---AATT-AATCCACACGAGTTGC...........................................................................................2511.0010000000000000000001000000000000000000000000000000000000000000000000000000000000
........GTA----------------------------------------------------------------ATG--TAACTGCCGTCTTGCAACGCCT--GT.....................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000
...........................................................................................................................................ACGAGTTGCGATTCTG-GGCAGTTGA---------------------------------------TT.................................2711.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
............................................................................................TGCAACGCCT--GTGGATA-CAAAGGT........................................................................................................................2411.0010000000000000000000010000000000000000000000000000000000000000000000000000000000
......................................................................................................................................TCCACACGAGTTGCGATTCTG-...................................................................................2111.0010000000000000000000000000000000000000000000000000000000000010000000000000000000
........................................................................................................................................CACACGAGTTGCGATTCTG-GGC................................................................................2211.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................CACGAGTTGCGATTCTG-GGCAGTT............................................................................2411.0010000000000000000000000000000000000000000000000000000000000010000000000000000000
.......................................................................................................................................CCACACGAGTTGCGATTCTG-...................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000001000000
AGT-CTATGTA----------------------------------------------------------------ATG--TAACTGCCGTCT...................................................................................................................................................2511.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
......ATGTA----------------------------------------------------------------ATG--TAACTGCCGTCTTGC................................................................................................................................................2311.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
...........................................................................................................................A---AATT-AATCCACACGAGTTG............................................................................................2011.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
............................................................................................TGCAACGCCT--GTGGATA-CAAAGGTCC......................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000001000000000
............................................................................................TGCAACGCCT--GTGGATA-CAAAGGTC.......................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000001000000000000000
.............................................................................G--TAACTGCCGTCTTGCAACGCCT--GTGG...................................................................................................................................2711.0010000000000000000000000000010000000000000000000000000000000000000000000000000000
droMoj3
GACAACAG----CACAGCAGC---C------GGCACTC--------------G---------------------TCTT--TAACTGCCGTCTTGCAGCTCCT--GTGGATG-CCCAGGTCCAAT---AAGT-AATCCACACGTGCTGCGATTCCG-GGCAGTTGAGG-GG---A-GCAA-CAGG--AT--TCCT--TTAA-GAACTACAGCT------A--------------------SizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
.............ACAGCAGC---C------GGCACTC--------------G---------------------TCTT--...............................................................................................................................................................2112.002101000
...................................................................................................................................................CGATTCCG-GGCAGTTGAGG-GG---..................................................................2112.002100001
.............................................................................................GCAGCTCCT--GTGGATG-CCC............................................................................................................................1911.001000010
..........................................................................................CTTGCAGCTCCT--GTGGATG-CCCAG..........................................................................................................................2411.001000001
..........................................................................................................................................................G-GGCAGTTGAGG-GG---A-GCA.............................................................1811.001000100
...........................................................................................TTGCAGCTCCT--GTGGATG-CCCA...........................................................................................................................2211.001000100
............................................................................................TGCAGCTCCT--GTGGATG-CCCAGGTCCA.....................................................................................................................2711.001001000
..................................................................................................................................................GCGATTCCG-GGCAGTTGAGG-GG---A-GC..............................................................2511.001000100
..................................ACTC--------------G---------------------TCTT--TAACTGCCGTCT...................................................................................................................................................2111.001000001
...............................................................................................AGCTCCT--GTGGATG-CCCAG..........................................................................................................................1911.001000100
.................................................................................................................................................................TTGAGG-GG---A-GCAA-CAGG--AT--TC...............................................2111.001100000
...............................................................................................................................................................................GCAA-CAGG--AT--TCCT--TTAA-GAACTACAGC............................2811.001100000
....................................................................................TGCCGTCTTGCAGCTCCT--GTGGATG-CCCA...........................................................................................................................2911.001100000
.........................................................................................TCTTGCAGCTCCT--GTGGAT.................................................................................................................................1911.001100000
.ACAACAG----CACAGCAGC---C------GGCA............................................................................................................................................................................................................2111.001100000
..........................................................................................................................AT---AAGT-AATCCACACGTGCTGCG..........................................................................................2311.001100000
...........................................................................................................................T---AAGT-AATCCACACGTGCTG............................................................................................2011.001100000
droGri2
ATA-GAGGA---ATCATCATAAT-T------TGTAT---------ATCAATCTA-T------ATAATCTTACAATGAT--TAACTGCCGTCTTGCCGGGCCT--GTGGGCA-CCCAGGTCCAAACAAAAGT-TGCCCACATGCTCGGCGATTCTG-AGCAGTTAAA--------------------------C---TCAGT---------TTAA--CTT--CATTCACAACT-------SizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
..................................................................................ACTGCCGTCTTGCCGGGCCT--G......................................................................................................................................2111.00110
droAna3
TTA-AG------------------------------------------GAACCGTT------T--ATC------TCCCATTAACTGCTGTCTTGCAGAGTCT--GTGGAC---G-TGGTCCAAA----TT--TGTCTACAGCCACTGCGATTCCG-GGCAGTTGAAAGTG---AT--AA-TACGG-AC--TCCCCAAAAACACATCACATCT-GCGCTT--TGTGCACC----------SizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
...................................................................C------TCCCATTAACTGCTGTCTTGC................................................................................................................................................2217.007160000
.......................................................................................................................................CTACAGCCACTGCGATTCCG-GGC................................................................................2316.006060000
.................................................................ATC------TCCCATTAACTGCTGTCTTGC................................................................................................................................................2414.004031000
.........................................................................................................................AAA----TT--TGTCTACAGCCACTGC...........................................................................................2113.003030000
..............................................................T--ATC------TCCCATTAACTGCTGTCTTGC................................................................................................................................................2513.003120000
...............................................................................................AGAGTCT--GTGGAC---G-TGGTCC......................................................................................................................2013.003110010
..........................................................................................................................AA----TT--TGTCTACAGCCACTGC...........................................................................................2013.003030000
...............................................................................................AGAGTCT--GTGGAC---G-TGGTCCA.....................................................................................................................2112.002110000
.....................................................................................................................GTCCAAA----TT--TGTCTACAGCCACTGC...........................................................................................2512.002020000
.........................................................................................................................................ACAGCCACTGCGATTCCG-GGC................................................................................2112.002020000
.......................................................................................TGTCTTGCAGAGTCT--GTGGA..................................................................................................................................2012.002100010
.......................................................................................................................................CTACAGCCACTGCGATTCCG-GGCA...............................................................................2412.002011000
...........................................................................................................................A----TT--TGTCTACAGCCACTGC...........................................................................................1912.002020000
................................................................................................................................................................GTTGAAAGTG---AT--AA-TACGG-AC--T................................................2212.002010001
.........................................................................................................................AAA----TT--TGTCTACAGCCACT.............................................................................................1911.001010000
...................................................................................................................................................................GAAAGTG---AT--AA-TACGG-AC--TCCCC............................................2311.001010000
................................................................................................................................................................GTTGAAAGTG---AT--AA-TACGG-AC--TCCCCAA..........................................2811.001100000
...................................................................................CTGCTGTCTTGCAGAGTCT--GT.....................................................................................................................................2111.001010000
......................................................................................................................................................................................................AACACATCACATCT-GCGCTT--TGT...............2311.001010000
...............................................................................................AGAGTCT--GTGGAC---G-TGGT........................................................................................................................1811.001010000
................................................GAACCGTT------T--ATC------TCCCATTAACT..........................................................................................................................................................2311.001010000
.....................................................................................................................................................................................................AAACACATCACATCT-GCGC......................1911.001010000
.....................................................................................................................................................................................................AAACACATCACATCT-GCGCTT--TGTGCAC...........2811.001010000
................................................................................................GAGTCT--GTGGAC---G-TGGTCCAA....................................................................................................................2111.001100000
TTA-AG------------------------------------------GAACCGTT------T--ATC------TCC..................................................................................................................................................................2011.001000001
................................................................................................GAGTCT--GTGGAC---G-TGGTCCAAA----...............................................................................................................2211.001100000
................................................................................TAACTGCTGTCTTGCAGAGTCT--GT.....................................................................................................................................2411.001000100
.....................................................................................GCTGTCTTGCAGAGTCT--GC.....................................................................................................................................1911.001010000
........................................................................................................................................................................................................CACATCACATCT-GCGCTT--TGTGCACC----------2611.001010000
................................................................................................GAGTCT--GTGGAC---G-TGGTCC......................................................................................................................1911.001010000
.....................................................................................................................................................................AAGTG---AT--AA-TACGG-AC--TCCCCAAAA........................................2511.001000010
...................................................................................................................................................................GAAAGTG---AT--AA-TACGG-AC--TCCCCAA..........................................2511.001100000
...........................................................................................................................................................................................................ATCACATCT-GCGCTT--TGTGCAC...........2211.001010000
.......................................................................................................................................................................GTG---AT--AA-TACGG-AC--TCCCCAAA.........................................2211.001000001
....................................................................................TGCTGTCTTGCAGAGTCT--GTGGA..................................................................................................................................2311.001000001
............................................................................................TGCAGAGTCT--GTGGAC---G-TGGTCCAAA----TT--...........................................................................................................2811.001000001
...............................................................................................AGAGTCT--GTGGAC---G-TGGTC.......................................................................................................................1911.001001000
................................................................................................................................................................GTTGAAAGTG---AT--AA-TACGG-AC--TCCCC............................................2611.001010000
...........................................................................................................................A----TT--TGTCTACAGCCACTGCGATTCCG-GGC................................................................................2911.001010000
..............................................................................................CAGAGTCT--GTGGAC---G-TGGTCCA.....................................................................................................................2211.001010000
.............................................................................CATTAACTGCTGTCTTGC................................................................................................................................................1811.001001000
...................................................................................................................................................................GAAAGTG---AT--AA-TACGG-AC--T................................................1911.001001000
...................................................................................................................................................................GAAAGTG---AT--AA-TACGG-AC--TCCC.............................................2211.001010000
...................................................................C------TCCCATTAACTGCTGTCTTGCA...............................................................................................................................................2311.001001000
....................................................................................................................................TGTCTACAGCCACTGCGATTCCG-GGCA...............................................................................2711.001100000
........................................................................................................................CAAA----TT--TGTCTACAGCCACTGC...........................................................................................2211.001010000
......................................................TT------T--ATC------TCCCATTAACTGCT.......................................................................................................................................................2011.001010000
............................................................................................TGCAGAGTCT--GTGGAC---G-TGGTCCA.....................................................................................................................2411.001000010
....................................................................................................................................................GATTCCG-GGCAGTTGAAAGTG---AT--A.............................................................2411.001010000
.....................................................................................................................................................................................................AAACACATCACATCT-GCGCTT--T.................2211.001010000
.................................................................................AACTGCTGTCTTGCAGAGTC..........................................................................................................................................2011.001010000
.....................................................GTT------T--ATC------TCCCATTAACTGCT.......................................................................................................................................................2111.001010000
.............................................................................................GCAGAGTCT--GTGGAC---G-TGGTCCAAA----TT--T..........................................................................................................2811.001000001
..........................................................................................................................................CAGCCACTGCGATTCCG-GGC................................................................................2011.001010000
..................................................ACCGTT------T--ATC------TCCCATTAACC..........................................................................................................................................................2111.001010000
.............................................................................................................................................................................................................CACATCT-GCGCTT--TGTGCACC----------2111.001010000
...........................................................................................................................................AGCCACTGCGATTCCG-GGT................................................................................1920.501010000
droBip1
TTA-AG------------------------------------------GATCAGCA-T----T---TC------TCCCATTAACTGCCGTCTTGCAGCGTCT--GTGGAC---G-TGGTCCAAA----TT--TGTCTACAGCCGCTGCGATTCCGGGGCAGTTGCAAGTG---AAACCA-TACGG-AT--TCCT--CAAATACATCACATCT-GCGCTT--TGTGCAC-----------SizeHit CountTotal NormTotal
No Reads
droKik1
A--------------------------------------------------------------------------------AACTGCTGTCTTGCAGCGCCT--GTGGAC---TGTGGTCCAAA----TTA-AGTCTACAGTCGCTGCGATTCCG-GGCAGTTGAGT-GGCCGATGCTG-G----------------------ATCGCACTTAACGCTTCGTGTGCACC--GCAGAGAASizeHit CountTotal NormTotal
No Reads
droFic1
AGA-AGAGATAGG--ATCGGA---T------TGGAGTG-----G-ATCGATCGCCT------GGGATC------TGCC--TAACTGCCGTCTTGCAGCGC-C--GTAGAC---TTTGGTCCAAA---ATTT-AGCCTACGGCCGCTACGATTCCG-GGCAGTTGAAA-GG---ATCCAG-GATGCGAGT-CGC---CCAACCCTTCACACTTAACGCTT--TGTGCACC----------SizeHit CountTotal NormTotal
No Reads
droEle1
AGA-AGAGATAAGTCAACGGA---T------CGGATTG-----GAGTGGATCGGAT------TGCGTC------TGCC--TAACTGCCGTCTTGCAGCAC-T--GTAGTC---TTTGGTCCAAA---ATTT-AGTCTACAGCCGCTGCGATTCTG-GGCAGTTGAAA-GG---ATGCAATGATGACAG---GC---CCAGACCATCACACTTAACGCTT--TGTGCACC----------SizeHit CountTotal NormTotal
No Reads
droRho1
AGA-GGAGATAAGTCAACGGA---T------CGGATTG-----GAATGGATTGGAT------TGGATC------TGCC--TAACTGCCGTCTTGCAGCGC-T--GTATTC---TTTGGTCCAAA---ATTT-AGTCTATAGTCGCTACGATTCTG-GGCAGTTGAAA-TG---ATCCAA-GACGAGAG---GC---CCAATCCATCACACTTAACGCTT--TGTGCAC-----------SizeHit CountTotal NormTotal
No Reads
droBia1
AGA-GGAGATAAGTAAACAGA---T------CGGATTGGACTGGAGTGGATCGGAT------TGCATC------GGCC--TAACTGCTGTCTTGCAGGGC-C--GTAGAC---TTTGGTCCAAA---ATTT-AGTCTACGGTCGCTGCGATTCCG-GGCAGTTGAAA-GG---ATGCAA-GACGAGAG---AC---TCAGTCCACTAGACTTAACGCTT--TGTGCAC-----------SizeHit CountTotal NormTotal
No Reads
droTak1
G---------------------------------------------TGGATCGGAT------GGCATC------TGCC--TAACTGCTGTCTTGCAGGGC-C--GTGGAC---TTTGGTCCAAA---ATTT-AGTCTATGGTCGCTGCGATTCCG-GGCAGTTGAAA-GG---ATGCCA-AATGAGAG---AC---CCA---------ACCTAACGCTT--TGTGCAC-----------SizeHit CountTotal NormTotal
No Reads
droEug1
AAA-AGAGATAACTCAACAGG---T------CGGATTG-----GAGCGGATCGGAT------TGAATC------TGAT--TAACTGCTGTCTTGCAGCGC-T--GTAGAC---TGTGGTCCAAA---ATTT-AGTCTATAGTCGCTGCGATTCTG-GGCAGTTGTAA-GG---ATAAAAAGATGAGAG---GC---CCAAACCATCACACTTAACGCTT--TGTGCACC----------SizeHit CountTotal NormTotal
No Reads
dm3
AGA-AGAGATAAGTTAACAGA---T------TGGATTT-----GCGTCGATCGGAT------TGAATC------TGCC--TAACTGCTGTCTTGCAGGGC-T--GTAGGC---TTCGGTCCAAA---ATTA-AGTCTACAGTCTCTGCGATTCCG-GGCAGTTGAAA-TG---ATGCAA-GATGAGAG---GC---TCAGTCCATAACACTTAACGCTT--TGTGCACC----------SizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
........................................................................................................................................TACAGTCTCTGCGATTCCG-GGCAGT.............................................................................251106.0010600000000000000000000000000000000000000000010000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000010000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000201300001000100000004000021207111010
.............................................................................................................................................................................ATGCAA-GATGAGAG---GC---TCA........................................19120.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400001000000000000000000000000000000000000000000000000000000000000000000010000000000000000000001000000000000000000000000011100000000000000002400000000000000000000000000000000000000000000000000200000000000100000000000000000000000100000
...................GA---T------TGGATTT-----GCGTCGATCGGAT------.................................................................................................................................................................................23119.0019000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000001104000000000000100000000000000000000000000000000000000100000000200100000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000011000000000000000000000000001000000000000
....................A---T------TGGATTT-----GCGTCGATCGGAT------.................................................................................................................................................................................22119.0019000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000100010000000000000000000000000100000000100000100000000010100000001000000000000000000000000000000000000000000000000000040000000001210000000000000001000010000000
.........................................................................................................................................................................G---ATGCAA-GATGAGAG---GC---TCA........................................20116.0016000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000120010000051001000000000000000000000000000000000000001000000000000000000000000000000000000000100000000000000000000000010000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000
.........................................................................................................................................................................G---ATGCAA-GATGAGAG---GC---TCAGTCCA...................................25115.0015000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000200000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000001000000000000000000001000000000000000000000000000000000000000000000010000010100000010000201000000000000010000100000
.......................................................................................TGTCTTGCAGGGC-T--GTAGGC---..............................................................................................................................20114.0014000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000001010000000100100000000000000100004310000000000
..................................................TCGGAT------TGAATC------TGCC--TAACTGCTGT.....................................................................................................................................................26113.0013000000000000000000000000000000000000000000000000000000000000000000000000000001000000010000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000001102400000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................TAACTGCTGTCTTGCAGGG............................................................................................................................................19113.0013000000000000000000000000000020000000000000000000002100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000020100000000000000000000000100000
..................................................................................................................................................................TGAAA-TG---ATGCAA-GATGAGAG---................................................21112.0012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000
.......................................................................................................................................................TCCG-GGCAGTTGAAA-TG---ATGCAA-GATGA......................................................28112.0012000000000000000000000000000000000000000000000000000000000000000000000000000053220000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................T------TGGATTT-----GCGTCGATCGGAT------TGAATC------.....................................................................................................................................................................27111.0011000000000000000000000000000000000000010000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000010001000000000000000000000000000000000000000000000000000000000000000000000000030000001000000000000001000100000
........................T------TGGATTT-----GCGTCGATCGGAT------.................................................................................................................................................................................2119.009000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000200000000000000000000000000000000010000000000000000000000000000000002201000000000000000000000000000
.....................................................................................GCTGTCTTGCAGGGC-T--GTAGGC---..............................................................................................................................2219.009000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000020000000000000000000000000000000100000000000000000000000100000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
........................................................................................................................................................................TG---ATGCAA-GATGAGAG---GC---TCAGTCCA...................................2619.009000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000010000000030000000200000000000000000100000
.....................................................................................GCTGTCTTGCAGGGC-T--GTA....................................................................................................................................1919.009000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000121100000000001000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
....................................TT-----GCGTCGATCGGAT------TGAATC------TGC..................................................................................................................................................................2418.008000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000010000000000001000000000000200000
.............................................................................................................................................................................ATGCAA-GATGAGAG---GC---TCAGTCC....................................2318.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000001100000000000000000000000000000000000000000000000000000000000000010000000000000000020200000000
................................GGATTT-----GCGTCGATCGGAT------.................................................................................................................................................................................1918.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000010002000000000000020000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................TGGATTT-----GCGTCGATCGGAT------.................................................................................................................................................................................2018.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000100000000001100000000000000000000000000000
.......................................................................................TGTCTTGCAGGGC-T--GTAGGC---T.............................................................................................................................2117.007000000000000000000000000000000000000000000000000000000000000000000000000000010010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000012000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
.................CAGA---T------TGGATTT-----GCGTCGATCGGA........................................................................................................................................................................................2417.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007
.........................................................................................................................................................................G---ATGCAA-GATGAGAG---GC---T..........................................1817.007000000000000000000000000001000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000010000000000000000110000000000100000000000000000000000000000
............................................................................................TGCAGGGC-T--GTAGGC---TTCGGTCCA.....................................................................................................................2416.006000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000010100000000000000001000000000000000000000
............................................................................................TGCAGGGC-T--GTAGGC---TTCGGTCCAA....................................................................................................................2516.006000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000200000
........................................................................................................................................TACAGTCTCTGCGATTCCG-GGCAGTT............................................................................2616.006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000321000
...................................TTT-----GCGTCGATCGGAT------TGAATC------TGCC--...............................................................................................................................................................2616.006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000020000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000
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..................................................................TC------TGCC--TAACTGCTGTCTTGCAGGGC-..........................................................................................................................................2612.002000000000000000000000000000000000000000000000100000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.......................................................................................................................................................................................GAGAG---GC---TCAGTCCATAACACTTAA.........................2511.001000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.GA-AGAGATAAGTTAACAGA---T------T...............................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...........................................................................................................................................................................................G---GC---TCAGTCCATAACACT............................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................C------TGCC--TAACTGCTGTCTTGCAGG.............................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................GA---T------TGGATTT-----GCGTCGATC...........................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................TGAATC------TGCC--TAACTGCTGTCTTGCAGG.............................................................................................................................................2811.001000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................AA-GATGAGAG---GC---TCAGTCCATAAC...............................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..........................................................................................CTTGCAGGGC-T--GTAGGC---TTCGGTCCAAA---A...............................................................................................................2911.001000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................ATGCAA-GATGAGAG---GC---TCAGTCCATA.................................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.....................................................................................................................................................ATTCCG-GGCAGTTGAAA-TG---ATG...............................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.........................................................................................................................................................CG-GGCAGTTGAAA-TG---ATGCAA-GATGA......................................................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................TC------TGCC--TAACTGCTGTCTTGCAGG.............................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...................GA---T------TGGATTT-----GCGTCGATCGGAT------TGAATC------.....................................................................................................................................................................2911.001000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................TCAGTCCATAACACTTAACGCTT--TGTGCAC...........3011.001000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................GATCGGAT------TGAATC------TGCC--TA.............................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................TGCGATTCCG-GGCAGTTGAAA-TG---ATGC..............................................................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
.................................................................................AACTGCTGTCTTGCAGGGC-..........................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................TTCCG-GGCAGTTGAAA-TG---ATGCAA-GATGA......................................................2911.001000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................TGCAGGGC-T--GTAGGC---TTCT..........................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................T--GTAGGC---TTCGGTCCAAA---ATTA-AGTCTA.....................................................................................................2811.001000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................AGTCTACAGTCTCTGCGAT........................................................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................TCGGAT------TGAATC------TGCC--TAACTGCTG......................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
AGA-AGAGATAAGTCAACAGA---T------TGGATTT-----GCGCCGATCGGCT------TGAATC------TGCC--TAACTGCTGTCTTGCAGGGC-T--GTAGGC---TTCGGTCCAAA---ATTT-AGTCTACAGTCGCTGCGATTCCG-GGCAGTTGAAA-TG---ATGCAA-GATGAGAG---GC---CCAGTCCATAACACTTAACGCTT--TGTGCACC----------SizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
............................................................................................................................................GTCGCTGCGATTCCG-GGC................................................................................18118.0018031500000000000000
..........................................................................................................................AA---ATTT-AGTCTACAGTCGCTGC...........................................................................................2217.00701510000000000000
............................................................................................TGCAGGGC-T--GTAGGC---TTCGGTCC......................................................................................................................2315.00511200000000100000
............GTCAACAGA---T------TGGATTT-----GC..................................................................................................................................................................................................1915.00500500000000000000
............................................................................................................................................GTCGCTGCGATTCCG-GGCAGT.............................................................................2114.00400300000001000000
...............................................................................................................................ATTT-AGTCTACAGTCGCTGC...........................................................................................2014.00400300000000100000
..........................................................................................CTTGCAGGGC-T--GTAGGC---TTCGGTCC......................................................................................................................2513.00300300000000000000
....................................................................................................................................................GATTCCG-GGCAGTTGAAA-T......................................................................1913.00320100000000000000
.....................................................................................GCTGTCTTGCAGGGC-T--GTA....................................................................................................................................1913.00300300000000000000
............................................................................................TGCAGGGC-T--GTAGGC---TTC...........................................................................................................................1813.00320100000000000000
.................................................................................................................................TT-AGTCTACAGTCGCTGCGATT.......................................................................................2213.00330000000000000000
.........................................................................................................................................................................................................CCATAACACTTAACGCTT--TGTGCACC----------2613.00300300000000000000
......................................................................................................................................................TTCCG-GGCAGTTGAAA-TG---ATGCAA-GA.........................................................2613.00300000030000000000
............................................................................................................................................GTCGCTGCGATTCCG-GGCAG..............................................................................2012.00200200000000000000
........................................................................................................................................................................TG---ATGCAA-GATGAGAG---GC---C..........................................1912.00200200000000000000
.......................................................................................................................CCAAA---ATTT-AGTCTACAGTCGCTGC...........................................................................................2512.00201100000000000000
............................................................................................................................................GTCGCTGCGATTCCG-GGCA...............................................................................1912.00200200000000000000
...................................................CGGCT------TGAATC------TGCC--TAACTGCTGTCT...................................................................................................................................................2712.00202000000000000000
..........................................................................................................................................................................................................CATAACACTTAACGCTT--TGTGCACC----------2512.00200200000000000000
...........................................................................................................................................AGTCGCTGCGATTCCG-GGC................................................................................1912.00200200000000000000
.........TAAGTCAACAGA---T------TGGATTT-----GCGCCGA.............................................................................................................................................................................................2712.00200000010001000000
............GTCAACAGA---T------TGGATTT-----GCGCCGAT............................................................................................................................................................................................2512.00200200000000000000
................................................................................................................................TTT-AGTCTACAGTCGCTGC...........................................................................................1912.00200100000000100000
.........................................................................................................................AAA---ATTT-AGTCTACAGTCGCTG............................................................................................2212.00200200000000000000
..............CAACAGA---T------TGGATTT-----GCGCCGATCGGCT------.................................................................................................................................................................................2812.00200110000000000000
............................................................................................................................................GTCGCTGCGATTCCG-GGCAGG.............................................................................2112.00200200000000000000
............GTCAACAGA---T------TGGATTT-----GCGCC...............................................................................................................................................................................................2212.00200200000000000000
................................................................................................................................TTT-AGTCTACAGTCGCTG............................................................................................1812.00200200000000000000
...............AACAGA---T------TGGATTT-----GCGC................................................................................................................................................................................................1812.00210100000000000000
..........................................................................................................................AA---ATTT-AGTCTACAGTCGCTG............................................................................................2112.00200200000000000000
.......GATAAGTCAACAGA---T------TGGAT...........................................................................................................................................................................................................2011.00100100000000000000
...............................................................................................................................ATTT-AGTCTACAGTCGCTGCGATT.......................................................................................2411.00100000000000100000
..................................................................................ACTGCTGTCTTGCAGGGC-T--GTA....................................................................................................................................2211.00100000000000001000
.....................................................................................GCTGTCTTGCAGGGC-T--GTAGGC---T.............................................................................................................................2311.00100100000000000000
............................................................................................................................................GTCGCTGCGATTCCG-GGCAGC.............................................................................2111.00100100000000000000
.......................................................................................................................................CTACAGTCGCTGCGATTCCG-GGCAGT.............................................................................2611.00100100000000000000
........................................................................................................................................TACAGTCGCTGCGATTCCG-GGCAGT.............................................................................2511.00100100000000000000
............................................................................................TGCAGGGC-T--GTAGGC---TTCGGTCCA.....................................................................................................................2411.00100100000000000000
...................................................................................CTGCTGTCTTGCAGGGC-T--GTAGGC---..............................................................................................................................2411.00100100000000000000
.......................................................................................................................................................TCCG-GGCAGTTGAAA-TG---ATGCAA-GA.........................................................2511.00100000010000000000
..........................................................................................................................................CAGTCGCTGCGATTCCG-G..................................................................................1811.00100000100000000000
.................................................................................AACTGCTGTCTTGCAGGGC-T--GTAGGC---TT............................................................................................................................2811.00110000000000000000
...................................................CGGCT------TGAATC------TGCC--TAACT..........................................................................................................................................................2011.00110000000000000000
........ATAAGTCAACAGA---T------TGGATTT-----GC..................................................................................................................................................................................................2311.00101000000000000000
....................................................................................TGCTGTCTTGCAGGGC-T--GTAGG..................................................................................................................................2211.00100100000000000000
...............................................................................................AGGGC-T--GTAGGC---TTCGGTCC......................................................................................................................2011.00110000000000000000
....................................................................................................................................AGTCTACAGTCGCTGCGATTCCG-GGC................................................................................2611.00100100000000000000
....................................................................................................................................................................................GATGAGAG---GC---CCAGTCCATAACACT............................2511.00100000000000100000
..........................................................................................................................AA---ATTT-AGTCTACAGTCGCTGG...........................................................................................2211.00100100000000000000
............GTCAACAGA---T------TGGATTT-----GCGC................................................................................................................................................................................................2111.00100010000000000000
...............................TGGATTT-----GCGCCGATCGGCT------TGAATC------.....................................................................................................................................................................2611.00100000000001000000
......................................................................................................................................................TTCCG-GGCAGTTGAAA-TG---ATGCAA-G..........................................................2511.00100000000000100000
..............CAACAGA---T------TGGATTT-----GCGC................................................................................................................................................................................................1911.00100100000000000000
.....................................................................................................................................................................................................CAGTCCATAACACTTAACGCT.....................2111.00101000000000000000
.......................................................................................................................................................................................................GTCCATAACACTTAACGCTT--TGTGCACC----------2811.00100100000000000000
.........................................................................................TCTTGCAGGGC-T--GTAGGC---T.............................................................................................................................1911.00100100000000000000
.....................................................................................................................................GTCTACAGTCGCTGCGATTCCG-GGCAG..............................................................................2711.00100100000000000000
....................................................................................TGCTGTCTTGCAGGGC-T--GTA....................................................................................................................................2011.00100100000000000000
.......................................................................................................................................CTACAGTCGCTGCGATTCCG-GGC................................................................................2311.00100100000000000000
................................................................................................................................................................GTTGAAA-TG---ATGCAA-GATGAGAG---GC---C..........................................2611.00100000000000100000
...........................................................................................................................................AGTCGCTGCGATTCCG-GGCAGTT............................................................................2311.00100000000000100000
............................................................................CC--TAACTGCTGTCTTGCAGGGC-T--GTAG...................................................................................................................................2711.00100100000000000000
.......................................................................................................................................................................................................GTCCATAACACTTAACGCTT--..................2011.00100100000000000000
.................................................................................................................................................TGCGATTCCG-GGCAGTTGAAA-TG---ATG...............................................................2611.00100000001000000000
..................................................................................................................................T-AGTCTACAGTCGCTGCGATTCCG-GGC................................................................................2711.00100100000000000000
...............................................................................................AGGGC-T--GTAGGC---TTC...........................................................................................................................1511.00100000000001000000
........................T------TGGATTT-----GCGCCGATCGGC........................................................................................................................................................................................2011.00100000000000100000
......................................................................................................................................................TTCCG-GGCAGTTGAAA-TG---ATGC..............................................................2211.00100100000000000000
.........................................................................................................................................ACAGTCGCTGCGATTCCG-GGCAGT.............................................................................2411.00100000000001000000
...............................................................................................................................................................................GCAA-GATGAGAG---GC---CCAGTCCAT..................................2311.00100000000000100000
............................................................................................TGCAGGGC-T--GTAGGC---TTCGG.........................................................................................................................2011.00100100000000000000
..................................................................................................................................................................................A-GATGAGAG---GC---CCAGTCCA...................................1911.00100000000000100000
...........................................................................................................................................AGTCGCTGCGATTCCG-GGCAGT.............................................................................2211.00100000001000000000
...............................................................................................................................ATTT-AGTCTACAGTCGCTG............................................................................................1911.00100100000000000000
...........................................................................................................................A---ATTT-AGTCTACAGTCGCTGC...........................................................................................2111.00100000000000100000
...........................................................................................................................................AGTCGCTGCGATTCCG-GGCA...............................................................................2011.00100000000000100000
......................................................CT------TGAATC------TGCC--TAACTGC........................................................................................................................................................1911.00100100000000000000
..................................................................TC------TGCC--TAACTGCTGTCT...................................................................................................................................................1811.00100100000000000000
.......................................................................................TGTCTTGCAGGGC-T--GTAGGC---T.............................................................................................................................2111.00110000000000000000
........................T------TGGATTT-----GCGCCGATCGGCT------TGAATC------.....................................................................................................................................................................2711.00100000000001000000
..........................................................................................................................................CAGTCGCTGCGATTCCG-GGC................................................................................2011.00101000000000000000
.......................................................................................................................................................TCCG-GGCAGTTGAAA-TG---ATGC..............................................................2111.00100100000000000000
.............................................GCCGATCGGCT------TGAATC------TGC..................................................................................................................................................................2011.00100010000000000000
..................................................................................................................................................................................A-GATGAGAG---GC---CCAGTCCAT..................................2011.00100000000000100000
..........................................................................................CTTGCAGGGC-T--GTAGGC---TTC...........................................................................................................................2011.00110000000000000000
........................T------TGGATTT-----GCGCCGATCGGCC------.................................................................................................................................................................................2111.00100100000000000000
........................T------TGGATTT-----GCGCCGATCGGCT------T................................................................................................................................................................................2211.00100100000000000000
.......................................................................................................................................................................................................GTCCATAACACTTAACGCTT--TGT...............2311.00100010000000000000
....................A---T------TGGATTT-----GCGCCGATCGGCT------.................................................................................................................................................................................2211.00101000000000000000
............GTCAACAGA---T------TGGATTT-----GCGCCGATC...........................................................................................................................................................................................2611.00100000000000100000
.....................................................................................................................................GTCTACAGTCGCTGCGAT........................................................................................1811.00100000100000000000
......................................................................................................................................TCTACAGTCGCTGCGATTCCG-GGCAG..............................................................................2611.00100100000000000000
.....................................................................................................................................................ATTCCG-GGCAGTTGAAA-T......................................................................1811.00100100000000000000
..........AAGTCAACAGA---T------TGGATTT-----GC..................................................................................................................................................................................................2111.00100100000000000000
.......................................................................................................................................................................................................GTCCATAACACTTAACGCT.....................1911.00100100000000000000
................ACAGA---T------TGGATTT-----GCGCCGAT............................................................................................................................................................................................2111.00100000000000100000
.................................................................................................................................TT-AGTCTACAGTCGCTGC...........................................................................................1811.00100100000000000000
...................................TTT-----GCGCCGATCGGCT------TGAATC------TGCC--...............................................................................................................................................................2611.00100000001000000000
.......................................................................................................................................................TCCG-GGCAGTTGAAA-TG---ATGCAA-GATG.......................................................2711.00100000000000001000
........................................................................................................................CAAA---ATTT-AGTCTACAGTCGCTG............................................................................................2311.00100100000000000000
........................................................................................................................CAAA---ATTT-AGTCTACAGTCGCTGC...........................................................................................2411.00100100000000000000
......................................................................................................................................................................................................AGTCCATAACACTTAACGCTT--TGTGCACC----------2911.00100100000000000000
.....................................................................................GCTGTCTTGCAGGGC-T--GTAGGC---..............................................................................................................................2211.00100000000000100000
...........................................................................................................................................................................................................ATAACACTTAACGCTT--TGT...............1911.00100000000000100000
droSec2
AGA-AGAGATAAGTCAACAGA---T------TGGATTT-----GCGTCGATCGGCT------TGAATC------TGCC--TAACTGCTGTCTTGCAGGGC-T--GTAGGC---TTCGGTCCAAA---ATTT-AGTCTACAGTCACTGCGATTCCG-GGCAGTTGAAA-TG---ATGCAA-GATGAGAG---GC---CCAGTCCATAACACTTAACGCTT--TGTGCACC----------SizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
............GTCAACAGA---T------TGGATTT-----GC..................................................................................................................................................................................................1919.0090270
............GTCAACAGA---T------TGGATTT-----GCGTCGAT............................................................................................................................................................................................2514.0040040
............GTCAACAGA---T------TGGATTT-----GCGTCGATC...........................................................................................................................................................................................2614.0040220
....................................................................................TGCTGTCTTGCAGGGC-T--GTAGGC---..............................................................................................................................2312.0020110
............................................................................................................................................GTCACTGCGATTCCG-GGCAGT.............................................................................2112.0020020
............................................................................................TGCAGGGC-T--GTAGGC---TTCGGTCCA.....................................................................................................................2412.0020101
...................GA---T------TGGATTT-----GCGTCGAT............................................................................................................................................................................................1812.0021001
.................................................................................AACTGCTGTCTTGCAGGGC-T--GTAGGC---..............................................................................................................................2612.0020110
............................................................................................................................................GTCACTGCGATTCCG-GGCAGTT............................................................................2212.0020020
.......GATAAGTCAACAGA---T------TGGATTT-----GC..................................................................................................................................................................................................2412.0020110
................ACAGA---T------TGGATTT-----GCGTCGAT............................................................................................................................................................................................2112.0020002
............................................................................................TGCAGGGC-T--GTAGGC---TTCGGTCC......................................................................................................................2312.0020110
............................................................................................................................................GTCACTGCGATTCCG-GGCA...............................................................................1912.0020020
.........................................................................................................................................................................G---ATGCAA-GATGAGAG---GC---CCAGTCCA...................................2512.0020110
..................................................................................................................................................................TGAAA-TG---ATGCAA-GATGAGAG---GC---CC.........................................2512.0020020
......AGATAAGTCAACAGA---T------TGGATTT-----GC..................................................................................................................................................................................................2511.0010100
..............CAACAGA---T------TGGATTT-----GCGTCGAT............................................................................................................................................................................................2311.0010100
...........................................................................................................................................AGTCACTGCGATTCCG-GGCAGTT............................................................................2311.0010010
............................................................................................TGCAGGGC-T--GTAGGC---TTCGGT........................................................................................................................2111.0010100
.................................................................................................................................................................................AA-GATGAGAG---GC---CCAGTCC....................................1911.0010010
...................................................................C------TGCC--TAACTGCTGTCTTGCAGGG............................................................................................................................................2411.0010100
...................................................................................................................................................................GAAA-TG---ATGCAA-GATGAGAG---GC---C..........................................2311.0011000
..................................ATTT-----GCGTCGATCGGCT------TGA..............................................................................................................................................................................2011.0010100
..................................................................................................................................................................TGAAA-TG---ATGCAA-GATGAG.....................................................1911.0010010
.............................................................................................................................................................................ATGCAA-GATGAGAG---GC---CCAGTC.....................................2211.0010010
...........AGTCAACAGA---T------TGGATTT-----GCGTCGATC...........................................................................................................................................................................................2711.0010010
....................................................................................................................................................................................GATGAGAG---GC---CCAGTCCATAACACT............................2511.0010010
.........................................................................................................................................................................G---ATGCAA-GATGAGAG---GC---CCAGT......................................2211.0010010
....................................................................................................................................................................AAA-TG---ATGCAA-GATGAGAG---GC---CC.........................................2311.0010010
..............CAACAGA---T------TGGATTT-----GCGTCGATC...........................................................................................................................................................................................2411.0010010
...................................................................................................................................................................GAAA-TG---ATGCAA-GATGAGA....................................................1911.0011000
..................................................................................................................................T-AGTCTACAGTCACTGCGATTCCG-GGC................................................................................2711.0011000
....................A---T------TGGATTT-----GCGTCGATCGGCT------.................................................................................................................................................................................2211.0010100
..................AGA---T------TGGATTT-----GCGTCGATCGGC........................................................................................................................................................................................2311.0011000
............................................................................................................................................GTCACTGCGATTCCG-GGCC...............................................................................1911.0010010
..................................................................................................................................................................TGAAA-TG---ATGCAA-GATGAGA....................................................2011.0010010
....................................................................................................................................................................................GATGAGAG---GC---CCAGTCCAT..................................1911.0010010
.........TAAGTCAACAGA---T------TGGATTT-----GC..................................................................................................................................................................................................2211.0010010
.........TAAGTCAACAGA---T------TGGATTT-----GCGTCGAT............................................................................................................................................................................................2811.0010100
........................................................................................................................................TACAGTCACTGCGATTCCG-GGCAGT.............................................................................2511.0010100
.................................GATTT-----GCGTCGATCGGCT------TGA..............................................................................................................................................................................2111.0010100
.........................................................................................................................................................................G---ATGCAA-GATGAGAG---GC---C..........................................1811.0010010
...........AGTCAACAGA---T------TGGATTT-----GC..................................................................................................................................................................................................2011.0010010
.......................................................................................................................................................................................GAGAG---GC---CCAGTCCATAACACT............................2211.0010001
................................................................................................GGGC-T--GTAGGC---TTCGGTCC......................................................................................................................1911.0010010
...................................................................................................................................................................GAAA-TG---ATGCAA-GATGAGAG---GC---CC.........................................2411.0010010
............................................................................................TGCAGGGC-T--GTAGGC---TTC...........................................................................................................................1811.0010001
................................................................................................................................................CTGCGATTCCG-GGCAGTTGA..........................................................................2011.0011000
...............AACAGA---T------TGGATTT-----GCGTCGAT............................................................................................................................................................................................2211.0010001
...............AACAGA---T------TGGATTT-----GCGTCGATC...........................................................................................................................................................................................2311.0010100
.........................................................................................................................................................................G---ATGCAA-GATGAGAG---GC---CC.........................................1911.0010010
....................A---T------TGGATTT-----GCGTCGATCGGCT------TGAATC------.....................................................................................................................................................................2811.0010100
....................................................................................................................................................................AAA-TG---ATGCAA-GATGAGAG---GC---CCAGTCC....................................2811.0010100
......................................................................................................................................................................A-TG---ATGCAA-GATGAGAG---GC---CCAGTCC....................................2611.0010100
...................................................CGGCT------TGAATC------TGCC--TAACTGCTGTCT...................................................................................................................................................2711.0010010
..................................................................................................................................................................................A-GATGAGAG---GC---CCAGTCC....................................1811.0010010
.....................................................................................................................................................................................ATGAGAG---GC---CCAGTCCATAACACTT...........................2511.0010010
....................A---T------TGGATTT-----GCGTCGATCGGCT------TGAAT............................................................................................................................................................................2711.0010100
...................................................................................................................................................................GAAA-TG---ATGCAA-GATGAGAG---GC---CCA........................................2511.0010100
......................................................................................................................................................................A-TG---ATGCAA-GATGAGAG---GC---CCAGT......................................2411.0010100
................................................................................................................................................................GTTGAAA-TG---ATGCAA-GATGAGAG---GC---...........................................2511.0010010
...................................................................................................................................................................GAAA-TG---ATGCAA-GATGAGAG---GC---...........................................2211.0010010
....................................................................................TGCTGTCTTGCAGGGC-T--G......................................................................................................................................1811.0010010
......................................................................................................................................................................A-TG---ATGCAA-GATGAGAG---GC---C..........................................2011.0010001
.....................................................................................................................................................................................ATGAGAG---GC---CCAGTCCATAACACT............................2411.0010010
.............TCAACAGA---T------TGGATTT-----GCGT................................................................................................................................................................................................2011.0010010
............................................................................................................................................GTCACTGCGATTCCG-GGC................................................................................1811.0010010
................................................................................................................................................................GTTGAAA-TG---ATGCAA-GATGAG.....................................................2111.0010100
..............................................................................................................................................CACTGCGATTCCG-GGCAGTTG...........................................................................2111.0010100
..........................................................................................CTTGCAGGGC-T--GTAGGC---TTC...........................................................................................................................2011.0011000
droYak3
AGA-AGAGAT---------------------CGGATCG-----GCGTCGATCGGAT------TAAGTC------TGCC--TAACTGCTGTCTTGCAGGGC-T--GTAGGC---TTTGGTCCAAA---ATTT-AGTCTACAGTCGCTGCGATTCCG-GGCAGTTGAAA-TG---ATGCAA-GATGAAAGAGAGC---CCGGTCCATAACACTTAACGCTT--TGTGCACC----------SizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
............................................................................................................................................GTCGCTGCGATTCCG-GGCAGT.............................................................................2116.00601300020000
............................................................................................................................................GTCGCTGCGATTCCG-GGC................................................................................1816.00610500000000
.............................................................................................................................................................................ATGCAA-GATGAAAGAGAGC---CCGGTC.....................................2515.00501300010000
.....................................................................................GCTGTCTTGCAGGGC-T--GTAGGC---..............................................................................................................................2214.00400200020000
.........................................................................................................................................................................G---ATGCAA-GATGAAAGAGAGC---CCGGT......................................2513.00300100020000
.................................................................................AACTGCTGTCTTGCAGGGC-T--GTAGGC---..............................................................................................................................2613.00300210000000
................................................................................................................................TTT-AGTCTACAGTCGCTGC...........................................................................................1912.00201100000000
AGA-AGAGAT---------------------CGGATCG-----GC..................................................................................................................................................................................................1812.00200200000000
............................................................................................................................................GTCGCTGCGATTCCG-GGCAGTT............................................................................2212.00201100000000
....................................................................................................................................................................................GATGAAAGAGAGC---CCGGTC.....................................1912.00200100010000
.......................................................................................................................................CTACAGTCGCTGCGATTCCG-GGC................................................................................2312.00200100010000
....................................................................................................................................................GATTCCG-GGCAGTTGAAA-TG---..................................................................2012.00200110000000
.........................................................................................................................................................................G---ATGCAA-GATGAAAGAGAGC---CC.........................................2212.00200200000000
..........................................................................................CTTGCAGGGC-T--GTAGGC---TTTGGTCC......................................................................................................................2512.00200100010000
...............................................................................................................................ATTT-AGTCTACAGTCGCTGC...........................................................................................2012.00200020000000
..........................................................................................................................................................................................................CATAACACTTAACGCTT--TGT...............2012.00200100010000
...........................................................................................................................A---ATTT-AGTCTACAGTCGCTGC...........................................................................................2111.00100100000000
...............................................................................................................................ATTT-AGTCTACAGTCGCTGCG..........................................................................................2111.00100000010000
..........................................................................................................................AA---ATTT-AGTCTACAGTCGCTGC...........................................................................................2211.00100100000000
....................................................................................................................................................................AAA-TG---ATGCAA-GATGAAAGA..................................................2011.00100100000000
....................................................................................TGCTGTCTTGCAGGGC-T--GTAGGC---..............................................................................................................................2311.00101000000000
.................................................................................................................................................................................AA-GATGAAAGAGAGC---CCGGT......................................2011.00100000010000
...............................................................................................................................................................................GCAA-GATGAAAGAGAGC---CCGGTC.....................................2311.00100100000000
....AGAGAT---------------------CGGATCG-----GCGTCGATCGGAT------T................................................................................................................................................................................2711.00100000010000
............................................................................................................................................GTCGCTGCGATTCCG-GGCA...............................................................................1911.00110000000000
AGA-AGAGAT---------------------CGGATCG-----GCGTCGATCGGAT------.................................................................................................................................................................................2911.00100000010000
AGA-AGAGAT---------------------CGGATCG-----GCGTCGATCG..........................................................................................................................................................................................2611.00100000010000
.........................................................................................................................................................................G---ATGCAA-GATGAAAGAGAGC---CCGGTC.....................................2611.00100000010000
..................................................................................................................................................................TGAAA-TG---ATGCAA-GATGAAAGAGA................................................2411.00100000010000
..A-AGAGAT---------------------CGGATCG-----GCGTCGAT............................................................................................................................................................................................2211.00100100000000
........................................................................................................................................TACAGTCGCTGCGATTCCG-GGCA...............................................................................2311.00100100000000
............................................................................................................................................GTCGCTGCGATTCCG-GGCAGTC............................................................................2211.00100100000000
....................................................................................................................................................................................GATGAAAGAGAGC---CCGGTCCATAACACTTA..........................3011.00100000010000
....................................CG-----GCGTCGATCGGAT------TAAGTC------TGC..................................................................................................................................................................2411.00100100000000
..................................................................................................................................................................TGAAA-TG---ATGCAA-GATGAAA....................................................2011.00100000010000
....................................................................................................................................................................AAA-TG---ATGCAA-GATGAAAGAGAGC---CCGGT......................................2911.00100000010000
......................................................................................................................................................................A-TG---ATGCAA-GATGAAAGAGAGC---CCG........................................2511.00100000010000
...................................................CGGAT------TAAGTC------TGCC--TAACT..........................................................................................................................................................2011.00100100000000
...............................................................................................AGGGC-T--GTAGGC---TTTGGTC.......................................................................................................................1911.00100000010000
.....................................................................................................................................................................................ATGAAAGAGAGC---CCGGTCC....................................1911.00100100000000
..........................................................................................................................................CAGTCGCTGCGATTCCG-GGC................................................................................2011.00100100000000
.........................................................................................................................AAA---ATTT-AGTCTACAGTCGCTGC...........................................................................................2311.00100100000000
..........................................................................................................................................................................................................CATAACACTTAACGCTT--TGTGCACC----------2511.00100100000000
.....GAGAT---------------------CGGATCG-----GCGTCGAT............................................................................................................................................................................................2011.00110000000000
........................................................................................................................................TACAGTCGCTGCGATTCCG-GGCAGT.............................................................................2511.00100010000000
....................................................................................................................................................................................GATGAAAGAGAGC---CCGGTCC....................................2011.00100100000000
....................................................................................................................................................................................GATGAAAGAGAGC---CCGGTCCATAAC...............................2511.00100000010000
..................................................................................................................................................................TGAAA-TG---ATGCAA-GATGAAAGA..................................................2211.00100100000000
.................................................................................AACTGCTGTCTTGCAGGGC-T--G......................................................................................................................................2111.00100100000000
........................................................................................................................CAAA---ATTT-AGTCTACAGTCGCTGC...........................................................................................2411.00100100000000
........................................................................................................................................................................................AAAGAGAGC---CCGGTCCATAAC...............................2111.00100100000000
.....................................G-----GCGTCGATCGGAT------TAAGT............................................................................................................................................................................1911.00100000010000
....................................................................................................................................................................AAA-TG---ATGCAA-GATGAAAG...................................................1911.00100010000000
...................................................................................................................................................................GAAA-TG---ATGCAA-GATGAAAGAGA................................................2311.00100000010000
......................................................................................CTGTCTTGCAGGGC-T--GTAGGC---TTTGGTCC......................................................................................................................2911.00100100000000
..................................................................................................................................................................TGAAA-TG---ATGCAA-GATGAAAGAGAGC---CC.........................................2811.00100000010000
..................................................................................................................................................................................A-GATGAAAGAGAGC---CCGGTCC....................................2111.00100100000000
.........................................................................................................................................................................G---ATGCAA-GATGAAAGAGAGC---CCGGTCCAC..................................2911.00100100000000
.................................................ATCGGAT------TAAGTC------TGCC--TAACTGCTGTCT...................................................................................................................................................2911.00110000000000
.............................................................................................................................................................................ATGCAA-GATGAAAGAGAGC---CCGGTCC....................................2611.00100100000000
.........................................................................................................................................................................G---ATGCAA-GATGAAAGAGAGC---CCGGC......................................2511.00100100000000
............................................................................................................................................................................................AGAGC---CCGGTCCATAACACT............................2011.00100010000000
......................................................................................CTGTCTTGCAGGGC-T--GTAGGC---..............................................................................................................................2111.00100100000000
..................................................................................................................................................................TGAAA-TG---ATGCAA-GATGAAAGAGAGC---C..........................................2711.00100100000000
.............................................................................C--TAACTGCTGTCTTGCAGGGC-T--.......................................................................................................................................2211.00100100000000
....................................................................................................................................................................AAA-TG---ATGCAA-GATGAAAGAGAGC---C..........................................2511.00100100000000
AGA-AGAGAT---------------------CGGATCG-----GCGTCGATC...........................................................................................................................................................................................2511.00100100000000
................................................................................................................................TTT-AGTCTACAGTCGCTGCGATTCCG-GGC................................................................................2911.00100000010000
.....GAGAT---------------------CGGATCG-----GCGTCGATC...........................................................................................................................................................................................2111.00100100000000
................................................................................................................................................................................CAA-GATGAAAGAGAGC---CCGGTCC....................................2311.00100100000000
................................................................................................................................................................................CAA-GATGAAAGAGAGC---CCGGTC.....................................2211.00101000000000
.......GAT---------------------CGGATCG-----GCGTCGATCGGAT------.................................................................................................................................................................................2311.00110000000000
....AGAGAT---------------------CGGATCG-----GCGTCGAT............................................................................................................................................................................................2111.00100010000000
....AGAGAT---------------------CGGATCG-----GCGTCGAC............................................................................................................................................................................................2111.00100100000000
..............................................................................................................................................................................TGCAA-GATGAAAGAGAGC---...........................................1811.00100100000000
....AGAGAT---------------------CGGATCG-----GCGTCGATC...........................................................................................................................................................................................2211.00100000010000
.............................................................................................................................................................................ATGCAA-GATGAAAGAGAGC---CCGGC......................................2411.00100100000000
.....................................................................................................................................................................AA-TG---ATGCAA-GATGAAAGAGAGC---CCGGT......................................2811.00100000010000
.............................................GTCGATCGGAT------TAAGTC------TGC..................................................................................................................................................................2011.00100000010000
..................................ATCG-----GCGTCGATCGGAT------TAAGTC------TGC..................................................................................................................................................................2611.00100000010000
.....................................................................................GCTGTCTTGCAGGGC-T--GTAGGC---TTTGGTC.......................................................................................................................2911.00100000010000
...................................................................................CTGCTGTCTTGCAGGGC-T--GTAGGC---..............................................................................................................................2411.00100100000000
..................................................................................................................................................................TGAAA-TG---ATGCAA-GATGAAAGAGAGC---CCG........................................2911.00100000010000
.....................................................................................GCTGTCTTGCAGGGC-T--GTAGGC---TTTGGT........................................................................................................................2811.00100100000000
droEre2
AGA-AGAGAT---------------------CGGATTG-----GCGTCAATCGGAT------TGAATC------TGCC--TAACTGCTGTCTTGCAGGGC-T--GTAGGC---TTCGGTCCAAA---ATTT-AGTCTACAGTCGCTGCGATTCCG-GGCAGTTGAAA-GG---ATGCAA-GATGAGAG---GC---CCAGTCCATGACACTTAACGCTT--TGTGCAC-----------SizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
...............................................................................................................................ATTT-AGTCTACAGTCGCTGC...........................................................................................2017.0070205000
............................................................................................................................................GTCGCTGCGATTCCG-GGCAGTT............................................................................2216.0060105000
.......................................................................................................................................................................................................GTCCATGACACTTAACGCTT--TGT...............2316.0060501000
...................................................................................CTGCTGTCTTGCAGGGC-T--GTAGGC---..............................................................................................................................2415.0050302000
............................................................................................................................................GTCGCTGCGATTCCG-GGCA...............................................................................1915.0050203000
............................................................................................................................................GTCGCTGCGATTCCG-GGC................................................................................1814.0040400000
..........................................................................................................................AA---ATTT-AGTCTACAGTCGCTGC...........................................................................................2213.0030102000
............................................................................................................................................GTCGCTGCGATTCCG-GGCAGT.............................................................................2113.0030300000
..........................................................................................CTTGCAGGGC-T--GTAGGC---TTCGGTCC......................................................................................................................2513.0030201000
..A-AGAGAT---------------------CGGATTG-----GCGTCAATCGGAT------.................................................................................................................................................................................2713.0030200100
................................................................................................................................................................GTTGAAA-GG---ATGCAA-GATGAGAG---................................................2313.0030102000
................................................................................................................................TTT-AGTCTACAGTCGCTGCGATTCC.....................................................................................2512.0020200000
...........................................................................................................................................AGTCGCTGCGATTCCG-GGCAGTT............................................................................2312.0020101000
.......................................................................................................................................................................................................GTCCATGACACTTAACGCTT--TGC...............2312.0020200000
................................................................................................................................TTT-AGTCTACAGTCGCTGCGATTCCG-GGC................................................................................2912.0020200000
......................................................................................................................................TCTACAGTCGCTGCGATTCC.....................................................................................2012.0020002000
...............................................................................................................................................................................GCAA-GATGAGAG---GC---CCAGTCCAT..................................2312.0020002000
....................................................................................................................................................................AAA-GG---ATGCAA-GATGAGAG---GC---...........................................2112.0020200000
AGA-AGAGAT---------------------CGGATTG-----GCGTCAATCGGA........................................................................................................................................................................................2811.0011000000
.................................GATTG-----GCGTCAATCGGAT------TGA..............................................................................................................................................................................2111.0010001000
................................GGATTG-----GCGTCAATCGGAT------TGAATC------.....................................................................................................................................................................2511.0010100000
..........................................................................................................................................................................................................CATGACACTTAACGCTT--TGT...............2011.0010001000
....................................................................................................................................AGTCTACAGTCGCTGCGATTCCG-GGCA...............................................................................2711.0010100000
....................................................................................................................................................GATTCCG-GGCAGTTGAAA-GG---AT................................................................2211.0010001000
...................................TTG-----GCGTCAATCGGAT------TGA..............................................................................................................................................................................1911.0010100000
....................................TG-----GCGTCAATCGGAT------TGAATC------TGC..................................................................................................................................................................2411.0010001000
..................................................................................ACTGCTGTCTTGCAGGGC-T--GTA....................................................................................................................................2211.0010000100
............................................................................................................................................GTCGCTGCGATTCCG-GGCG...............................................................................1911.0010001000
..................................................................................................................................................................................A-GATGAGAG---GC---CCAGTCCATGACACT............................2611.0010001000
................................................................................................................................................................GTTGAAA-GG---ATGCAA-GATG.......................................................1911.0010001000
..........................................................................................CTTGCAGGGC-T--GTAGGC---TTCGGTC.......................................................................................................................2411.0010001000
......................................................................................................................................................................................TGAGAG---GC---CCAGTCCATGACACT............................2311.0010001000
.........................................................................................................................................................................G---ATGCAA-GATGAGAG---GC---CCAGT......................................2211.0010100000
.........................................................................................................................................................................G---ATGCAA-GATGAGAG---GC---CCA........................................2011.0010001000
...........................................................................................................................A---ATTT-AGTCTACAGTCGCTGCGATTCC.....................................................................................2711.0010000010
................................................................................................................................TTT-AGTCTACAGTCGCTGC...........................................................................................1911.0010001000
..A-AGAGAT---------------------CGGATTG-----GCGTCAATCGGAT------T................................................................................................................................................................................2811.0010000100
.......................................................................................................................................................................................................GTCCATGACACTTAACGCT.....................1911.0010100000
.............................................................................................................................................................................ATGCAA-GATGAGAG---GC---CCA........................................1911.0010001000
....................................................................................................................................................GATTCCG-GGCAGTTGAAA-G......................................................................1911.0010010000
..............................................................................................................................................................................TGCAA-GATGAGAG---GC---CCAGTCC....................................2211.0010001000
.................................................................................AACTGCTGTCTTGCAGGG............................................................................................................................................1811.0010001000
........................................................................................................................................TACAGTCGCTGCGATTCCG-GGCAGTT............................................................................2611.0010001000
...........................................................................................................................................AGTCGCTGCGATTCCG-GGCAG..............................................................................2111.0010100000
.....GAGAT---------------------CGGATTG-----GCGTCAATCGGAT------.................................................................................................................................................................................2511.0010100000
....................................................................................................................................................................................GATGAGAG---GC---CCAGTCCATGACAC.............................2411.0010100000
...........................................................................................................GGC---TTCGGTCCAAA---ATTT-AGTCTACA...................................................................................................2611.0010100000
..................................................................................................................................................................TGAAA-GG---ATGCAA-GATGAGA....................................................2011.0010001000
....................................................................................................................................................GATTCCG-GGCAGTTGAAA-GG---..................................................................2011.0010001000
...............................................................................................................................................................AGTTGAAA-GG---ATGCAA-GATGAGAG---................................................2411.0010001000
............................................................................................TGCAGGGC-T--GTAGGC---TTCGGTCCA.....................................................................................................................2411.0010000010
....AGAGAT---------------------CGGATTG-----GCGTCAATCGGAT------.................................................................................................................................................................................2611.0010100000
.........................................................................................................................................ACAGTCGCTGCGATTCCG-GGC................................................................................2111.0010100000
..............................................................................................................................................................................TGCAA-GATGAGAG---GC---CCA........................................1811.0011000000
....................................................................................................................................AGTCTACAGTCGCTGCGATTCCG-GGC................................................................................2611.0010100000
.......................................................................................................................................CTACAGTCGCTGCGATTCCG-GGC................................................................................2311.0010001000
.................................................ATCGGAT------TGAATC------TGCC--TAAC...........................................................................................................................................................2111.0011000000
..................................................................................................................................................................TGAAA-GG---ATGCAA-GATGAGAG---GC---CCA........................................2611.0010100000
...........................................................................................................................A---ATTT-AGTCTACAGTCGCTGCGATTC......................................................................................2611.0010000100
....................................................................................................................................AGTCTACAGTCGCTGCGATT.......................................................................................2011.0010000100
................................GGATTG-----GCGTCAATCGGAT------.................................................................................................................................................................................1911.0011000000
.................................................................................AACTGCTGTCTTGCAGGGC-T--GTAGGC---..............................................................................................................................2611.0010001000
...............................................................................................................................................................AGTTGAAA-GG---ATGCAA-GATGAGA....................................................2311.0010001000
.......................................................................................................................................................................................................GTCCATGACACTTAACGCTT--TGTT..............2411.0010001000
..........................................................................................CTTGCAGGGC-T--GTAGGC---TTC...........................................................................................................................2011.0011000000
.............................................................................................................................................................................ATGCAA-GATGAGAG---GC---CCAGTCC....................................2311.0010100000
.......................................................................................................................CCAAA---ATTT-AGTCTACAGTCGCTGC...........................................................................................2511.0010100000
.............................................................................C--TAACTGCTGTCTTGCAGGGC-T--GTAGGC---..............................................................................................................................2811.0010100000
.................................................................................................................................TT-AGTCTACAGTCGCTGCGATTCCG-...................................................................................2511.0010100000
...................................................................................................................................................................GAAA-GG---ATGCAA-GATGAGAG---GC---CCA........................................2511.0010100000
..........................................................................TGCC--TAACTGCTGTCTTGCAGGG............................................................................................................................................2311.0010000010
................................................................................................................................................................GTTGAAA-GG---ATGCAA-GATGAGAG---GC---CCA........................................2811.0010100000
..................................ATTG-----GCGTCAATCGGAT------TGA..............................................................................................................................................................................2011.0010001000
.....................................................................................GCTGTCTTGCAGGGC-T--GTAGGC---..............................................................................................................................2211.0010001000
................................GGATTG-----GCGTCAATCGGAT------TGAAT............................................................................................................................................................................2411.0010100000
.................................................................................................................................TT-AGTCTACAGTCGCTGCGATTCCG-GGC................................................................................2811.0010100000
................................................................................................................................................................GTTGAAA-GG---ATGCAA-GATGAGAG---GC---C..........................................2611.0010100000
.....................................................................................................................................................................AA-GG---ATGCAA-GATGAGAG---G...............................................1911.0010001000
...........................................................................................................................................AGTCGCTGCGATTCCG-GGC................................................................................1911.0010100000
.................................................................ATC------TGCC--TAACTGCTGTCTTGC................................................................................................................................................2211.0010100000
.......................................................................................................................................................................................GAGAG---GC---CCAGTCCATGACAC.............................2111.0010000100
.......GAT---------------------CGGATTG-----GCGTCAATCGGAT------.................................................................................................................................................................................2311.0011000000
............................................................................................TGCAGGGC-T--GTAGGC---TTCGGTCCAA....................................................................................................................2511.0011000000
.......................................................................................................................................................................................GAGAG---GC---CCAGTCCATGACA..............................2011.0010000100
...............................................................................................................................................................................GCAA-GATGAGAG---GC---CCAGTCCATGACA..............................2711.0010000100
..................................................................................................................................................................TGAAA-GG---ATGCAA-GATGAGAG---................................................2111.0010001000

Generated: 10/20/2015 at 11:27 PM