dps_2986

Name	Class	Family	Strand
Helitron-1N1_DVir	RC	Helitron	+

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GGAACCGGGCCATTCGATTCGTTGTCACCGGCAGTGCGGTGCTCTTTATGGTGGGTGCTCAGATTAAAAATATCTCTATATTTTCGTCGTCGTCGTGGTCTTGCAACACCCAGAAGAAAGCGTCTCCAACCCCATAAAGAATATATATATATACTTGATCAGCGTCAATAGTCGAGTCGATATAGCTGTGTCTGTCTTTCCGGCCGTCCGTCTTGATGAGCGCCTCGCAATCAAATGCTGTATTACTATAC ************************************************(((((.....(((...(((((((....)))))))(((..((.((..(((........)))..)).))..)))))).....)))))((((((((((..((((((((((((...........)))))))..)))))..)))))...)))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M040 female body	V112 male body	GSM343916 embryo	SRR902010 ovaries
..........................................................................................................................................................TTGATCAGCGTCAATAGTCGAGTCGATA.....................................................................	28	0	1	1.00	1	1	0	0	0
.........................................................................................................AAACCCAGAATAAAGCGTCCC.............................................................................................................................	21	3	5	0.20	1	0	1	0	0
......................................................................................................................................................................................................TCCGTCCGTCCGTGTTGATCAGC..............................	23	3	6	0.17	1	1	0	0	0
.........................................................................................................................................................CTTGATCAGCGTCAA...................................................................................	15	0	19	0.16	3	0	0	0	3
..........................TCCGGAGGTGCGGTGCTCTT.............................................................................................................................................................................................................	20	3	9	0.11	1	1	0	0	0
.............................................TTATGGTCAGTGCTCAGA............................................................................................................................................................................................	18	2	10	0.10	1	0	0	1	0
..................................................................................................................................................AAATATACTTGATCAGGG.......................................................................................	18	2	17	0.06	1	0	0	1	0

CCTTGGCCCGGTAAGCTAAGCAACAGTGGCCGTCACGCCACGAGAAATACCACCCACGAGTCTAATTTTTATAGAGATATAAAAGCAGCAGCAGCACCAGAACGTTGTGGGTCTTCTTTCGCAGAGGTTGGGGTATTTCTTATATATATATATGAACTAGTCGCAGTTATCAGCTCAGCTATATCGACACAGACAGAAAGGCCGGCAGGCAGAACTACTCGCGGAGCGTTAGTTTACGACATAATGATATG ************************************************(((((.....(((...(((((((....)))))))(((..((.((..(((........)))..)).))..)))))).....)))))((((((((((..((((((((((((...........)))))))..)))))..)))))...)))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M040 female body	GSM444067 head	GSM343916 embryo
.................................................................................................................TTCTTTCGCGGATGTTGGGGG.....................................................................................................................	21	3	1	1.00	1	0	1	0
...................................................................................................................................................................................................................GAACGCCTCGCGGAGCGTT.....................	19	2	1	1.00	1	1	0	0
.........................................................................................................................CAGAGGTAGGGGCATTTCTT..............................................................................................................	20	2	2	0.50	1	0	0	1
..................................................................................................................................................................GCAGTTTTTAGCTCAGCTA......................................................................	19	2	5	0.20	1	1	0	0
.........................................................................................................................................................................TCAGATGAGCTATGTCGAC...............................................................	19	3	9	0.11	1	1	0	0
............................................................AGTAATTTTTATAGAGATA............................................................................................................................................................................	19	2	20	0.05	1	1	0	0

Species	Coordinate	ID	Alignment
dp5	XR_group6:1982042-1982292 +	dps_2986	GGAACCGGGCCATTCG-ATTCGTTGTCACCGG-----CAG--------------------------------TGCGGTGCTCTTTATGGTGGGTGCTC--AGATTAAAAATAT------CTCTAT--ATTTTCG--TCGTCG-----TCGTGGTC--TTGCAACACCCAGAAGAA-AGCGTCTCCAACCCCATAAAGAATATA----TATATATACTTGATCAGCGTCAATAGTCGAGTCGATATAGCTGT--GTCTGTCTTTCCGGC--------CGTCCGTC----TTGATGAGCGCCTCGCAATCAAATG---------CTGTATTA--CTATAC
droPer2	scaffold_9:273302-273556 +		GGAACCGGGCCATTCG-ATTCGTTGTCACCGG-----CAG--------------------------------TGCGGTGCTCTTTATGGTGGGTGCTC--AGATTAAAAATAT------CTCTAT--ATTTTCG--TCGTCG-----TCGTGGTC--TTGCAACACCCAGAAGAA-AGCGTCTCCAACCCCATAAAGAATATATATGTATATATACTTGATCAGCGTCAATAGTCGAGTCGATATAGCTGT--GTTTGTCTTTCCGGC--------CGTCCGTC----TTGATGAGCGCCTCGCAATCAAATG---------CTGTATTC--CTGTGA
droWil2	scf2_1100000004585:1870714-1870895 -		TC--------------GATTTATCCTTGCCGC-----CAG--------------------------------CGGGATGATTTTTATACCC-----TTGCA--------------AAAAGGGTAT--ATTAA----TTTTGG-----TCAGAAGT--GTGCAACGCATAGAAGGA-AGCATTTCCGACCATATAAAGTA--------TATATATTCTTGATCAGCATGACGAGACGAGTTTATATAGCCAT--GTCCGTCCGTCCGTC--------CGTCCGTC------------------------------------------------------
droVir3	scaffold_12967:229940-230152 +		TT--------------G-----TTACTGCCGT-----TGC--------------------------------TGCTGTGGTTTTTATATTCTGAACCCATTA----AAAATGGGTATAGGCGTAT--ATAGT--ATTTTTGCAAAATCCAAATGT--ATGTATCAGGCAGAAGGA-AGCATCTCCAACC-CATAAAGTA--------TATATATTCTTGATCAGCATCAATAGCCGAGTCGATCTAGCCAT--GTCCGTATGTCTGTC--------CGTCCGCCCGTATGTATTAACGC---------------------------------------
droMoj3	scaffold_6541:1890766-1890939 +		AA--------------TA----------------------------------------------------------------------------------------------T------CTGTATATGATGG----CTTTG------TAAAAAGT--ATGTAACAGGCAGAAGGA-AGCGTTCTAGACCCCACAAAGAA--------TATATATTCTTGATTAGGGCGGCGAGCTGAGTCAATATAGCCCT--GTCCGCCCGTCCCTC--------TGTT---C----TGTGTGAACGCCGAGATCTCATGTA------------TACTCGTATATGC
droGri2	scaffold_15110:15836918-15837094 +		TA-----------------------------------------------------------------------------------------------------------------AAAATGGTTT--AATAG----TTTTGT-----GCTAACGT--ATGTAACAGGCAGAGGGA-AGCATCTCCGATCCCATAAAGTA--------TATATATTCTTGAACAGGATCAAAAGCCGTGTTGATATAGCCAT--GTAGGTCTGTCCGTCCCTTCGTCCATCCGTC----TGTATGAACTCGTGGATCTCAGAGAC---------TATA-----------
droAna3	scaffold_13230:3043179-3043376 +		GG---------------------------------------------------------------------------CGATTTTTATAACCGGTACTCGTAGA----------GTACAAGGGTAT--ATTGT----ATTCTT-----GTGAATGT--ATGAAACAGAGACAAGGA-ATCATCTCCGACC-CATAAAGTG--------GATACATTCTTGATCAGCATAAATATCCGATTCGATCTAACCAT--GCCCGATTGTCCGTC--------TGC----C----TGTATAAACACGTGGACCTCAGAGA------------TAGAT--CTATAA
droBip1	scf7180000395813:27815-28019 +		TC--------------C-----TTTTCGCTGA-----TAA--------------------------------TA----GCTTTTTATACCCGGTACTCGTAGA----------GTAAAAGGGTAT--ATTGT----AGTCGT-----GTGAATAT--ATGTAAGATAGAGAAGGG-ATCACCTTCGACCCCATAAAGCA--------TATACATTCTTGATCAGCATCAACAGCCGAGTCGATATAGGCAG-AGTCCGTCCGTCCGTC--------TGT----C----CGTATGAATGCGTGGATCTCAAAGAC------------------------
droKik1	scf7180000302752:15870-16081 +		GGAATCCTGCCATTCA-ATGCG----CATTCC-----TAGTGCGATATATTTCTGTTCAATTTTGC-------AAT-TTATTTTTATACCC-----TTGC------------------AGGGTAT--TATAA----TTTCAG-----TCAGAAGT--TTGCAACGCAGTGAAGGA-GACGTTTCCGACCCTATAAAGTA--------TATATATTCTTGATCAGCATCAACAGCCGAGTCGATCTAGCCAT--GTCCGTCTGTCCGTC--------TGTCTGTC----T-------------------------------------------------
droFic1	scf7180000449242:3444-3653 +		CAA-----GCAAGTCG-ATTTATTGTGTGCGG-----AAG-T---------------TTATTT---------TGGAAGGCTTTTTATACCC-----TTGCACA----------GCAAAAGGGTAT--TATAA----TTTCAG-----TCAGAAGT--TTGCAACGCAGTGAAGGA-GACACCTCAGACCCCATAAAGTA--------TATATATTCTTGATCAGCATCACGAGCAGAATCGAAATATAGCT--GTACGTCTGTACGTCTGTCCATCTGTCCGTC----T-------------------------------------------------
droEle1	scf7180000490971:189986-190174 -		TT-------------------------ACAGG-----AAA--------------------------------TACGGTGATTTTTATACCC-----TTGCA----------------GAGGGTAT--TATAA----TTTCAG-----TCAGAAGT--TTGCAACGCAGTGAAGGA-GACGTTTCCGACCCTATAAAGTA--------TATATATTCTTGATCAGCATCACTAGTAGAGTCGATCTAGCCAT--GTCCGTCTGTCCGTC--------CGTCTGTC----CGTCTGTCCGTCTGTCAGTC------------------------------
droRho1	scf7180000763006:8548-8777 -		TT--------------G-----TTGTCAATTC-----CAA--------------------------------T--CGCGCTTTTTATACCCGTTACTCGTAGA----------GTAAAAGGGTAT--ATTGT----ATTCGT-----GCAAAAGT--ATGTAACAGCTAGAAGGA-AGCGTTTCCGACCCTATAAAGTA--------TATATATTCTTGATCAGGGTCACTAGCCGAGTCGATATAGCCAT--GTCCGTCTGTCCGTC--------TGTCCGTC----CGTATGAACGCTGAGATCTCGGAAACTATAAAAGCTATAA----AAATGC
droBia1	scf7180000302521:51062-51250 +		GT------------------------CACGGA-----CAG--------------------------------GGAG-CTATTTTTATACCCGTTACTCGTAAA----------GTAAAAGGGTATATACTAG----ATTCGT-----CGCAAAGT--GTGTAACAGGTAAAAGAA-GCCGTTTCCGACCCCATAAAGTA--------TATGTAATCTGAATCAGGATCACTTGCCGAGTCGATATAGCCAT--GTTCGTCTGTCCGTC--------CGT----C----CGTATGAACGC---------------------------------------
droTak1	scf7180000415103:270423-270649 -		GGCGCCAGGTCATCTT-GTCCGT-------GGCCGCCAAGTTCGATCCCTATAA------------------GGTAAGAATTTTTATACCTGCTACTCGTAGA----------GAAAAAGGGTAT--ATTGT----ATTCGT-----GCAACAGT--ATGTAACAGCTAGAAGGA-AGCATTTCCGACCCCATAAAGTA--------CATATATTCTTCATCAGGGTCACTAGCCGAGTCGATATAGCCAT--GTCCGTTTGTCCGTC--------TGTCTGTC----TGTATGAACGC---------------------------------------
droEug1	scf7180000407725:5886-6085 -		TT--------------GA----TTTCCACCGC-----AGT--------------------------------TGCCGCACTTTTTATACCCGTTACTCGTAGA----------GTAAAAGGGTAT--ACTAG----ATTCGT-----TGAAAAGTAAGTGTAACAGATAGAAGGA-AGCTTTTGCGACCCTATAAAGTA--------TATATATTCTTGATCAGGATCAATAGCGAAGTCGATTGAGCCAT--GTCCGTCTGTCCGTC--------CGTCCGTC----CGTATGAACGC---------------------------------------
dm3	chr3R:204116-204282 -		T--------------------------------------------------------------------------------TTTTATACTCGTTACTCGTAGA----------GTAAAAGTGTGT--ACTAG----ATTTTT-----TTTAAACT--ATGTGGCAGGTCGAAGAA-AGCGTTTCCGACCATATAAGGTA--------TACATATTGTTGACCAGGATCAATACTCAAGTCGATCTGACCCT--GTCTGTCTGCCCGTC--------------------CGTATGAACGTCT-------------------------------------
droSim2	node_111346:5457-5608 +		T-----------------------------------------------------------------------------------TATGCCTGTTACTCATAGA----------GTAAAAGAATAT--ACTAT----ATTCGT-----TGAAAACT--ATGGAACATGCAGAAGGAAAGCGTTTCCGGCTATATACAGTA--TA----TATATATTCTTGATCAGGAACAATAGCCGAGTCGATCTAGCCAT--GTCCGTCTGTCCG------------------------------------------------------------------------
droSec2	scaffold_18:1198663-1198843 +		TC--------------GAGTCGATATGGCCAT-----GAC--------------------------------TGTCTTGATATTTTTATCCGATACTCGTAGA----------GTAAAAAGGTAT--ACTAT----ATTCGT-----TGAAAAGT--ATGTAACAGGCAGAAGGA-AGCGTTTCCGATCGTATAAAGTG--------TATATATTCTTGATCAGGATCAATAACCAAGTCGATCTGTCTAT--ATCCGTCTGTCCG------------------------------------------------------------------------
droYak3	chrXh:162067-162276 -		GGAACC--GCCATTGG-GT----TATCATCGGGCGCTGTATT---------------CAATTT------------TTTGTTTTTTATATCCGTTACTCGTAGA----------GTAAAAGGGTAT--ACTAG----ATTCGT-----TGAAAACT--ATGTAACAGGCAGAAGGA-AGCGTTTCCGACCATATAAAGTA--------TATATATTCTTGATCAGGATCAATAGCAGAGTCGATCTGGCCGTGTGTCCGTGTGTCCGTC--------CGTCTGTC------------------------------------------------------
droEre2	scaffold_4929:23598418-23598600 +		GAA----------------TCTTTGTCGCCGG-----CCT--------------GGTTTATTTTACGGGTATAAATCGTATTTTTATACCTGTTACTCGTAGA--------------------------------------------------GC--TTGCAACATGCAGAAGGA-AGCGTTTCCGTTCATATAAAGAA--------TATATATTCTTGATCAGGATCAATAGCCGAGTCGATCTGTCCAT--GTCCGTCTGTCCGT------------------------ATTAACGTCTCGAT---------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

dp5

GGAACCGGGCCATTCG-ATTCGTTGTCACCGG-----CAG--------------------------------TGCGGTGCTCTTTATGGTGGGTGCTC--AGATTAAAAATAT------CTCTAT--ATTTTCG--TCGTCG-----TCGTGGTC--TTGCAACACCCAGAAGAA-AGCGTCTCCAACCCCATAAAGAATATA----TATATATACTTGATCAGCGTCAATAGTCGAGTCGATATAGCTGT--GTCTGTCTTTCCGGC--------CGTCCGTC----TTGATGAGCGCCTCGCAATCAAATG---------CTGTATTA--CTATAC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
........................................................................................................................................................................................................................TTGATCAGCGTCAATAGTCGAGTCGATA..............................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................CTTGATCAGCGTCAA............................................................................................................	15	19	0.16	3	0	0	0	0	0	0	0	3	0	0

droPer2

GGAACCGGGCCATTCG-ATTCGTTGTCACCGG-----CAG--------------------------------TGCGGTGCTCTTTATGGTGGGTGCTC--AGATTAAAAATAT------CTCTAT--ATTTTCG--TCGTCG-----TCGTGGTC--TTGCAACACCCAGAAGAA-AGCGTCTCCAACCCCATAAAGAATATATATGTATATATACTTGATCAGCGTCAATAGTCGAGTCGATATAGCTGT--GTTTGTCTTTCCGGC--------CGTCCGTC----TTGATGAGCGCCTCGCAATCAAATG---------CTGTATTC--CTGTGA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droWil2

TC--------------GATTTATCCTTGCCGC-----CAG--------------------------------CGGGATGATTTTTATACCC-----TTGCA--------------AAAAGGGTAT--ATTAA----TTTTGG-----TCAGAAGT--GTGCAACGCATAGAAGGA-AGCATTTCCGACCATATAAAGTA--------TATATATTCTTGATCAGCATGACGAGACGAGTTTATATAGCCAT--GTCCGTCCGTCCGTC--------CGTCCGTC------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
............................................................................................................................T--ATTAA----TTTTGG-----TCAGAAGT--GTGCA................................................................................................................................................................................	25	20	0.90	18	0	18	0	0	0
..................................................................................................................................................................................................................................TGACGAGACGAGTTTATATAGCCAT--G....................................................................................	26	20	0.05	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................AT--GTCCGTCCGTCCGTC--------CG............................................................	19	20	0.05	1	0	1	0	0	0
...........................................................................................................................................................................................................................ATCAGCATGACGAGACGAGTT..................................................................................................	21	20	0.05	1	0	0	0	1	0
..................................................................................................................................AA----TTTTGG-----TCAGAAGT--GTGCAACG.............................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0

droVir3

TT--------------G-----TTACTGCCGT-----TGC--------------------------------TGCTGTGGTTTTTATATTCTGAACCCATTA----AAAATGGGTATAGGCGTAT--ATAGT--ATTTTTGCAAAATCCAAATGT--ATGTATCAGGCAGAAGGA-AGCATCTCCAACC-CATAAAGTA--------TATATATTCTTGATCAGCATCAATAGCCGAGTCGATCTAGCCAT--GTCCGTATGTCTGTC--------CGTCCGCCCGTATGTATTAACGC---------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...................................................................................................TTA----AAAATGGGTATAGGCGTAT--ATAG...............................................................................................................................................................................................................	26	1	6.00	6	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................TTA----AAAATGGGTATAGGCGTAT--ATAGT--............................................................................................................................................................................................................	27	1	6.00	6	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................TCCAAATGT--ATGTATCAGGCAGAAGG....................................................................................................................................................................	26	8	3.25	26	0	0	1	0	1	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	4	2	2	0	0	0	0	0	6	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................TTA----AAAATGGGTATAGGCGTAT--AT.................................................................................................................................................................................................................	24	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................TCGATCTAGCCAT--GTCCGTATGTCTG........................................................................	26	8	1.25	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	5	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................ATGGGTATAGGCGTAT--ATAG...............................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................TTA----AAAATGGGTATAGGCGTAT--ATAGT--A...........................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................TTA----AAAATGGGTATAGGCGTAT--ATA................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................TCCAAATGT--ATGTATCAGGCAGAAGGA-..................................................................................................................................................................	27	7	1.00	7	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................TCGATCTAGCCAT--GTCCGTATG............................................................................	22	12	0.92	11	0	0	1	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	5	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................TCCAAATGT--ATGTATCAGGCAGAAG.....................................................................................................................................................................	25	9	0.89	8	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	1	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................GTCGATCTAGCCAT--GTCCGTATGTC..........................................................................	25	9	0.89	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	2	1	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................TCGATCTAGCCAT--GTCCGTATGTC..........................................................................	24	11	0.82	9	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	3	0	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................TCGATCTAGCCAT--GTCCGTATGTCTGT.......................................................................	27	8	0.75	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................GAGTCGATCTAGCCAT--GTCCGTATG............................................................................	25	9	0.67	6	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..............................................................................................................................................................................................................................................TCGATCTAGCCAT--GTCCGTATGT...........................................................................	23	11	0.64	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	4	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................GTCGATCTAGCCAT--GTCCGTATGTCT.........................................................................	26	8	0.63	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................TCGATCTAGCCAT--GTCCGTATGTCT.........................................................................	25	8	0.63	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................TCCAAATGT--ATGTATCAGGCAGAAGGA-A.................................................................................................................................................................	28	7	0.57	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................GAGTCGATCTAGCCAT--GTCCGTATGT...........................................................................	26	8	0.50	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................TAGCCAT--GTCCGTATGTCTGTC--------..............................................................	22	13	0.46	6	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................TAAAGTA--------TATATATTCTTGATCAGCA................................................................................................................	26	20	0.45	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................TATATTCTTGATCAGCATCAATAG.........................................................................................................	24	20	0.45	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TT--------------G-----TTACTGCCGT-----TGC--------------------------------TGCTG.....................................................................................................................................................................................................................................................................	21	17	0.41	7	0	0	5	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................GAGTCGATCTAGCCAT--GTCCGTATGTCT.........................................................................	28	8	0.38	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TT--------------G-----TTACTGCCGT-----TGC--------------------------------TGCT......................................................................................................................................................................................................................................................................	20	20	0.30	6	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................CGATCTAGCCAT--GTCCGTATGTCTGT.......................................................................	26	8	0.25	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................TCTAGCCAT--GTCCGTATGTCTG........................................................................	22	12	0.25	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................ATATATTCTTGATCAGCATCAATAG.........................................................................................................	25	20	0.25	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................GAGTCGATCTAGCCAT--GTCCGTATGTC..........................................................................	27	8	0.25	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................TCGATCTAGCCAT--GTCCGTA..............................................................................	20	17	0.24	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TT--------------G-----TTACTGCCGT-----TGC--------------------------------TGCTGT....................................................................................................................................................................................................................................................................	22	17	0.24	4	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................TCCAAATGT--ATGTATCAGGCAGA.......................................................................................................................................................................	23	9	0.22	2	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................GTCGATCTAGCCAT--GTCCGTATGT...........................................................................	24	9	0.22	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................TCCAAATGT--ATGTATCAGGCAGAA......................................................................................................................................................................	24	9	0.22	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................GCCGAGTCGATCTAGCCAT--GTCCGTAT.............................................................................	27	9	0.22	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TT--------------G-----TTACTGCCGT-----TGC--------------------------------TGC.......................................................................................................................................................................................................................................................................	19	20	0.20	4	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................CGATCTAGCCAT--GTCCGTATGTC..........................................................................	23	11	0.18	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................CGATCTAGCCAT--GTCCGTATGT...........................................................................	22	11	0.18	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................TCTAGCCAT--GTCCGTATGTCT.........................................................................	21	12	0.17	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................CGATCTAGCCAT--GTCCGTATGTCTGTC--------..............................................................	27	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................GATCTAGCCAT--GTCCGTATGTC..........................................................................	22	13	0.15	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................ATATATTCTTGATCAGCATCAATAGC........................................................................................................	26	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................GTCGATCTAGCCAT--GTCCGTA..............................................................................	21	15	0.13	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................AGTCGATCTAGCCAT--GTCCGTA..............................................................................	22	15	0.13	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................CGATCTAGCCAT--GTCCGTATGTCTG........................................................................	25	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................CGATCTAGCCAT--GTCCGTATGTCT.........................................................................	24	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................GTCGATCTAGCCAT--GTCCGTATGTCTG........................................................................	27	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...................................................................................................................................................CCAAATGT--ATGTATCAGGCAGAAGG....................................................................................................................................................................	25	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................AGTCGATCTAGCCAT--GTCCGTATGTC..........................................................................	26	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................AGTCGATCTAGCCAT--GTCCGTATGT...........................................................................	25	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................TCTTGATCAGCATCAATAGCCGAGT...................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................GAGTCGATCTAGCCAT--GTCCG................................................................................	21	20	0.10	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................GGCAGAAGGA-AGCATCTCCA........................................................................................................................................................	20	20	0.10	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................GCCGAGTCGATCTAGCCAT--GTCCGT...............................................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................TCTAGCCAT--GTCCGTATGTCTGTC--------..............................................................	24	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.T--------------G-----TTACTGCCGT-----TGC--------------------------------TGC.......................................................................................................................................................................................................................................................................	18	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
................................................................................................................................................................................................................................................GATCTAGCCAT--GTCCGTATGTCTG........................................................................	24	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................TCCAAATGT--ATGTATCAGGCAT........................................................................................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................AGTCGATCTAGCCAT--GTCCGTATG............................................................................	24	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................TAAAGTA--------TATATATTCTTGATCAGC.................................................................................................................	25	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................TTCTTGATCAGCATCAATAGCCGAGTC..................................................................................................	27	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TCAGCATCAATAGCCGAGTCGATCTAG...........................................................................................	27	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................TCCAAATGT--ATGTATCAGG...........................................................................................................................................................................	19	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................GCCGAGTCGATCTAGCCAT--GTCCGTA..............................................................................	26	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................TGT--ATGTATCAGGCAGAAGG....................................................................................................................................................................	20	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................CTAGCCAT--GTCCGTATGTCTG........................................................................	21	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................AGTCGATCTAGCCAT--GTCCGTAT.............................................................................	23	12	0.08	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................ATCTAGCCAT--GTCCGTATGTCT.........................................................................	22	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................ATCTAGCCAT--GTCCGTATGTCTG........................................................................	23	12	0.08	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................GAGTCGATCTAGCCAT--GTCCGTATGG...........................................................................	26	13	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................CAAATGT--ATGTATCAGGCAGA.......................................................................................................................................................................	21	13	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................GATCTAGCCAT--GTCCGTATGT...........................................................................	21	15	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................TAGCCAT--GTCCGTATGTCTGT.......................................................................	21	15	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................AGCCAT--GTCCGTATGTCTGT.......................................................................	20	15	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................GCAAAATCCAAATGT--ATGTAT...............................................................................................................................................................................	21	15	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.T--------------G-----TTACTGCCGT-----TGC--------------------------------TGCTG.....................................................................................................................................................................................................................................................................	20	17	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.T--------------G-----TTACTGCCGT-----TGC--------------------------------TGCTGT....................................................................................................................................................................................................................................................................	21	17	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................CAGCATCAATAGCCGAGTCGATCTAGC..........................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................CAGAAGGA-AGCATCTCCAACC-C...................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TT--------------G-----TTACTGCCGT-----TGC--------------------------------TG........................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................TCTAGCCAT--GTCCGTATG............................................................................	18	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................ATTCTTGATCAGCATCAATAGCCGAG....................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................GCCGAGTCGATCTAGCCAT--G....................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................TA--------TATATATTCTTGATCAGCATCAAT...........................................................................................................	26	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................TTGATCAGCATCAATAGCCGAGTCG.................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................GTCGATCTAGCCAT--GTCCGTATT............................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................TAGCCGAGTCGATCTAGCCAT--GTC..................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..................................................................................................................................................................................................................................TCAATAGCCGAGTCGATCTAG...........................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................ATCAGCATCAATAGCCGAGTC..................................................................................................	21	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................CGAGTCGATCTAGCCAT--GT...................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................CAGCATCAATAGCCGAGTCGATC..............................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................CAGGCAGAAGGA-AGCATCTCCA........................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................TTCTTGATCAGCATCAATAGCCG......................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................TAGCCGAGTCGATCTAG...........................................................................................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AA--------------TA----------------------------------------------------------------------------------------------T------CTGTATATGATGG----CTTTG------TAAAAAGT--ATGTAACAGGCAGAAGGA-AGCGTTCTAGACCCCACAAAGAA--------TATATATTCTTGATTAGGGCGGCGAGCTGAGTCAATATAGCCCT--GTCCGCCCGTCCCTC--------TGTT---C----TGTGTGAACGCCGAGATCTCATGTA------------TACTCGTATATGC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.......................................................................................................................................................AAGT--ATGTAACAGGCAGAAGGA-AGCGTT............................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................................................TGTAACAGGCAGAAGGA-AGCG..............................................................................................................................................................	21	20	0.20	4	4	0	0	0	0	0
..........................................................................................................................................................................................ACCCCACAAAGAA--------TATATATTCTTGA......................................................................................................................	26	16	0.13	2	1	0	0	0	1	0
...............................................................................................................................................................GTAACAGGCAGAAGGA-AGC...............................................................................................................................................................	19	20	0.05	1	0	0	0	0	1	0
.........................................................................................................................................................GT--ATGTAACAGGCAGAAGGA-AGCGT.............................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	1

droGri2

TA-----------------------------------------------------------------------------------------------------------------AAAATGGTTT--AATAG----TTTTGT-----GCTAACGT--ATGTAACAGGCAGAGGGA-AGCATCTCCGATCCCATAAAGTA--------TATATATTCTTGAACAGGATCAAAAGCCGTGTTGATATAGCCAT--GTAGGTCTGTCCGTCCCTTCGTCCATCCGTC----TGTATGAACTCGTGGATCTCAGAGAC---------TATA-----------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droAna3

GG---------------------------------------------------------------------------CGATTTTTATAACCGGTACTCGTAGA----------GTACAAGGGTAT--ATTGT----ATTCTT-----GTGAATGT--ATGAAACAGAGACAAGGA-ATCATCTCCGACC-CATAAAGTG--------GATACATTCTTGATCAGCATAAATATCCGATTCGATCTAACCAT--GCCCGATTGTCCGTC--------TGC----C----TGTATAAACACGTGGACCTCAGAGA------------TAGAT--CTATAA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..............................................................................................ACTCGTAGA----------GTACAAGGG........................................................................................................................................................................................................................	18	10	0.10	1	1	0	0	0	0	0

droBip1

TC--------------C-----TTTTCGCTGA-----TAA--------------------------------TA----GCTTTTTATACCCGGTACTCGTAGA----------GTAAAAGGGTAT--ATTGT----AGTCGT-----GTGAATAT--ATGTAAGATAGAGAAGGG-ATCACCTTCGACCCCATAAAGCA--------TATACATTCTTGATCAGCATCAACAGCCGAGTCGATATAGGCAG-AGTCCGTCCGTCCGTC--------TGT----C----CGTATGAATGCGTGGATCTCAAAGAC------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GGAATCCTGCCATTCA-ATGCG----CATTCC-----TAGTGCGATATATTTCTGTTCAATTTTGC-------AAT-TTATTTTTATACCC-----TTGC------------------AGGGTAT--TATAA----TTTCAG-----TCAGAAGT--TTGCAACGCAGTGAAGGA-GACGTTTCCGACCCTATAAAGTA--------TATATATTCTTGATCAGCATCAACAGCCGAGTCGATCTAGCCAT--GTCCGTCTGTCCGTC--------TGTCTGTC----T-------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CAA-----GCAAGTCG-ATTTATTGTGTGCGG-----AAG-T---------------TTATTT---------TGGAAGGCTTTTTATACCC-----TTGCACA----------GCAAAAGGGTAT--TATAA----TTTCAG-----TCAGAAGT--TTGCAACGCAGTGAAGGA-GACACCTCAGACCCCATAAAGTA--------TATATATTCTTGATCAGCATCACGAGCAGAATCGAAATATAGCT--GTACGTCTGTACGTCTGTCCATCTGTCCGTC----T-------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TT-------------------------ACAGG-----AAA--------------------------------TACGGTGATTTTTATACCC-----TTGCA----------------GAGGGTAT--TATAA----TTTCAG-----TCAGAAGT--TTGCAACGCAGTGAAGGA-GACGTTTCCGACCCTATAAAGTA--------TATATATTCTTGATCAGCATCACTAGTAGAGTCGATCTAGCCAT--GTCCGTCTGTCCGTC--------CGTCTGTC----CGTCTGTCCGTCTGTCAGTC------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TT--------------G-----TTGTCAATTC-----CAA--------------------------------T--CGCGCTTTTTATACCCGTTACTCGTAGA----------GTAAAAGGGTAT--ATTGT----ATTCGT-----GCAAAAGT--ATGTAACAGCTAGAAGGA-AGCGTTTCCGACCCTATAAAGTA--------TATATATTCTTGATCAGGGTCACTAGCCGAGTCGATATAGCCAT--GTCCGTCTGTCCGTC--------TGTCCGTC----CGTATGAACGCTGAGATCTCGGAAACTATAAAAGCTATAA----AAATGC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GT------------------------CACGGA-----CAG--------------------------------GGAG-CTATTTTTATACCCGTTACTCGTAAA----------GTAAAAGGGTATATACTAG----ATTCGT-----CGCAAAGT--GTGTAACAGGTAAAAGAA-GCCGTTTCCGACCCCATAAAGTA--------TATGTAATCTGAATCAGGATCACTTGCCGAGTCGATATAGCCAT--GTTCGTCTGTCCGTC--------CGT----C----CGTATGAACGC---------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GGCGCCAGGTCATCTT-GTCCGT-------GGCCGCCAAGTTCGATCCCTATAA------------------GGTAAGAATTTTTATACCTGCTACTCGTAGA----------GAAAAAGGGTAT--ATTGT----ATTCGT-----GCAACAGT--ATGTAACAGCTAGAAGGA-AGCATTTCCGACCCCATAAAGTA--------CATATATTCTTCATCAGGGTCACTAGCCGAGTCGATATAGCCAT--GTCCGTTTGTCCGTC--------TGTCTGTC----TGTATGAACGC---------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TT--------------GA----TTTCCACCGC-----AGT--------------------------------TGCCGCACTTTTTATACCCGTTACTCGTAGA----------GTAAAAGGGTAT--ACTAG----ATTCGT-----TGAAAAGTAAGTGTAACAGATAGAAGGA-AGCTTTTGCGACCCTATAAAGTA--------TATATATTCTTGATCAGGATCAATAGCGAAGTCGATTGAGCCAT--GTCCGTCTGTCCGTC--------CGTCCGTC----CGTATGAACGC---------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

T--------------------------------------------------------------------------------TTTTATACTCGTTACTCGTAGA----------GTAAAAGTGTGT--ACTAG----ATTTTT-----TTTAAACT--ATGTGGCAGGTCGAAGAA-AGCGTTTCCGACCATATAAGGTA--------TACATATTGTTGACCAGGATCAATACTCAAGTCGATCTGACCCT--GTCTGTCTGCCCGTC--------------------CGTATGAACGTCT-------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..............................................................................................................................................................................................TATAAGGTA--------TACATATTGTTGA......................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................TATAAGGTA--------TACATATTGTTG.......................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
T--------------------------------------------------------------------------------TTTTATACTCGTTACTCGTAGA----------G................................................................................................................................................................................................................................	24	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................TTTATACTCGTTACTCGTAGA----------G................................................................................................................................................................................................................................	22	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................TTATACTCGTTACTCGTAGA----------.................................................................................................................................................................................................................................	20	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................GAAGAA-AGCGTTTCCGACC.....................................................................................................................................................	19	13	0.15	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................GAAGAA-AGCGTTTCCGACCATAT.................................................................................................................................................	23	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................TCGTTACTCGTAGA----------GTAAAT...........................................................................................................................................................................................................................	20	15	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................AAGAA-AGCGTTTCCGACCATA..................................................................................................................................................	21	15	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................AGAA-AGCGTTTCCGACCAT...................................................................................................................................................	19	17	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

T-----------------------------------------------------------------------------------TATGCCTGTTACTCATAGA----------GTAAAAGAATAT--ACTAT----ATTCGT-----TGAAAACT--ATGGAACATGCAGAAGGAAAGCGTTTCCGGCTATATACAGTA--TA----TATATATTCTTGATCAGGAACAATAGCCGAGTCGATCTAGCCAT--GTCCGTCTGTCCG------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..........................................................................................................................................................................................................................................CGAGTCGATCTAGCCAT--GTCCGTCT.............................................................................	25	20	5.15	103	0	0	4	0	0	0	0	2	0	0	97	0	0	0	0	0	0
..........................................................................................................................................................T--ATGGAACATGCAGAAGGAAAGCGTT............................................................................................................................................................	26	1	4.00	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
.............................................................................................................................................................................................................................CAGGAACAATAGCCGAGTCGATCTA............................................................................................	25	1	4.00	4	0	0	0	0	0	0	2	0	1	1	0	0	0	0	0	0	0
.........................................................................................................................................TTCGT-----TGAAAACT--ATGGAACATGC..........................................................................................................................................................................	24	1	4.00	4	0	0	0	0	0	0	1	0	3	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................GTA--TA----TATATATTCTTGATCAGGAAC..............................................................................................................	26	1	4.00	4	0	0	2	0	0	0	1	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................AAAACT--ATGGAACATGCAGAAGGAA..................................................................................................................................................................	25	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0
.....................................................................................................................................................AAAACT--ATGGAACATGCAGAAGGA...................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
..........................................................................................................................................................T--ATGGAACATGCAGAAGGAAAGCGT.............................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...................................................................................................................................T----ATTCGT-----TGAAAACT--ATGGAACATGC..........................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................CAGGAACAATAGCCGAGTCGATCTAGC..........................................................................................	27	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................GTA--TA----TATATATTCTTGATCAGGAACA.............................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0
.....................................................................................................................................................AAAACT--ATGGAACATGCAGAAGGAAAGC...............................................................................................................................................................	28	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................CAATAGCCGAGTCGATCTAGCCAT--.....................................................................................	24	20	1.85	37	0	0	1	1	0	0	0	2	0	2	22	0	9	0	0	0	0
..........................................................................................................................................................................................................................................CGAGTCGATCTAGCCAT--GTCCGTCTG............................................................................	26	20	1.15	23	0	0	1	5	0	0	0	0	0	0	17	0	0	0	0	0	0
.....................................................................................................................................................AAAACT--ATGGAACATGCAGAAGGAT..................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................GTA--TA----TATATATTCTTGATCAGGAACT.............................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................GGAACAATAGCCGAGTCGATCTAGC..........................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................TCGT-----TGAAAACT--ATGGAACATGCAGAA......................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................TCGT-----TGAAAACT--ATGGAACATGCAGA.......................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................TGAAAACT--ATGGAACATGCAGAAGGAA..................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................................TCTTGATCAGGAACAATAGCCGAGT...................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................TCGT-----TGAAAACT--ATGGAACATGCAG........................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................GTA--TA----TATATATTCTTGATCAGGAA...............................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................AAAACT--ATGGAACATGCAGAAGG....................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................AAAACT--ATGGAACATGCAGAAGGAAAGCG..............................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................TATATTCTTGATCAGGAACAATAGCCGAGT...................................................................................................	30	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................TAGCCGAGTCGATCTAGCCAT--GTC..................................................................................	24	20	0.95	19	0	0	0	0	0	0	3	3	0	3	10	0	0	0	0	0	0
..........................................................................................................................................................................................................................................CGAGTCGATCTAGCCAT--GTCCGT...............................................................................	23	20	0.85	17	0	0	0	3	0	0	0	0	0	1	13	0	0	0	0	0	0
......................................................................................................................................................................................................................................TAGCCGAGTCGATCTAGCCAT--GTCCG................................................................................	26	20	0.65	13	0	0	0	0	0	0	1	0	8	0	4	0	0	0	0	0	0
........................................................................................................................................................................................................................................GCCGAGTCGATCTAGCCAT--GTCCGTC..............................................................................	26	20	0.65	13	0	0	0	0	0	0	0	0	1	0	11	1	0	0	0	0	0
.............................................................................................................................................................................................................................CAGGAACAATAGCCGAGTCGATC..............................................................................................	23	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................CAATAGCCGAGTCGATCTAGCCAT--GT...................................................................................	26	20	0.45	9	0	0	0	0	0	0	0	0	0	0	7	0	2	0	0	0	0
........................................................................................................................................................................................................................................GCCGAGTCGATCTAGCCAT--GTC..................................................................................	22	20	0.40	8	0	0	0	0	0	0	0	6	0	0	2	0	0	0	0	0	0
.......................................................................................................................................................................................................................................AGCCGAGTCGATCTAGCCAT--GTCCGTC..............................................................................	27	20	0.40	8	0	0	0	1	0	0	1	1	0	0	5	0	0	0	0	0	0
....................................................................................................................................................................ATGCAGAAGGAAAGC...............................................................................................................................................................	15	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................GCCGAGTCGATCTAGCCAT--.....................................................................................	19	20	0.30	6	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0
........................................................................................................................................................................................................................................GCCGAGTCGATCTAGCCAT--GTCCGT...............................................................................	25	20	0.30	6	0	0	0	0	0	0	0	2	0	0	3	0	1	0	0	0	0
.............................................................................................................................................................................................................................................GTCGATCTAGCCAT--GTCCGTCTGTC..........................................................................	25	20	0.30	6	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0
....................................................................................................................................................................................................................................AATAGCCGAGTCGATCTAGCCAT--GTC..................................................................................	26	20	0.25	5	0	0	0	1	0	0	0	0	0	0	4	0	0	0	0	0	0
......................................................................................................................................................................................................................................TAGCCGAGTCGATCTAGCCAT--GTCCGTC..............................................................................	28	20	0.25	5	0	0	0	0	0	0	1	2	1	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................GAGTCGATCTAGCCAT--GTC..................................................................................	19	20	0.25	5	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0
..............................................................................................................................................................................................................................................TCGATCTAGCCAT--GTCCGTCTGTCCG------------------------------------------------------------------------	26	20	0.25	5	0	0	2	0	0	0	0	0	0	0	3	0	0	0	0	0	0
..........................................................................................................................................................................................................................................CGAGTCGATCTAGCCAT--GTCCGTCTT............................................................................	26	20	0.25	5	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0
...........................................................................................................................................................................................................................................GAGTCGATCTAGCCAT--GTCCGTCT.............................................................................	24	20	0.25	5	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0
..........................................................................................................................................................................................................................................CGAGTCGATCTAGCCAT--GTCCGTC..............................................................................	24	20	0.25	5	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................TAGCCGAGTCGATCTAGCCAT--GTCCGT...............................................................................	27	20	0.25	5	0	0	2	0	0	0	0	0	1	0	2	0	0	0	0	0	0
......................................................................................................................................................................................................................................TAGCCGAGTCGATCTAGCCAT--GTCC.................................................................................	25	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
...........................................................................................................................................................................................................................................GAGTCGATCTAGCCAT--G....................................................................................	17	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
.......................................................................................................................................................................................................................................AGCCGAGTCGATCTAGCCAT--GTCCGT...............................................................................	26	20	0.15	3	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................TAGCCGAGTCGATCTAGCCAT--G....................................................................................	22	20	0.15	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................TCTAGCCAT--GTCCGTCTGTCCG------------------------------------------------------------------------	22	20	0.10	2	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................CAATAGCCGAGTCGATCTAGCCAT--G....................................................................................	25	20	0.10	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................TCGATCTAGCCAT--GTCCGTCTGTC..........................................................................	24	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..........................................................................................................................................................................................................................................CGAGTCGATCTAGCCAT--GTCCG................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..........................................................................................................................................................................................................................................CGAGTCGATCTAGCCAT--GT...................................................................................	19	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
......................................................................................................................................................................................................................................TAGCCGAGTCGATCTAGCCAT--GT...................................................................................	23	20	0.10	2	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................GTCGATCTAGCCAT--GTCCGTCTG............................................................................	23	20	0.10	2	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................CAATAGCCGAGTCGATCTAGCCAT--GTCC.................................................................................	28	20	0.10	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................AGCCGAGTCGATCTAGCC.........................................................................................	18	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..........................................................................................................................................................................................................................................CGAGTCGATCTAGCC.........................................................................................	15	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...................................................................................................................................................................................................................................................CTAGCCAT--GTCCGTCT.............................................................................	16	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...............................................................................................................................................................................................................................................CGATCTAGCCAT--GTCCGTCTGTCCG------------------------------------------------------------------------	25	20	0.10	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................TATATTCTTGATCAGGAACAG............................................................................................................	21	15	0.07	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................TAGCCAT--GTCCGTCT.............................................................................	15	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................................................................................................................................................GATCTAGCCAT--GTCCGT...............................................................................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................ATCTAGCCAT--GTCCGTCTGTC..........................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................AGCCGAGTCGATCTAGCCAT--GT...................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................GCCGAGTCGATCTAGCCAT--GTCC.................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.......................................................................................................................................................................................................................................AGCCGAGTCGATCTAGCCAT--GTC..................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................CAATAGCCGAGTCGATCTAGCCAT--GTC..................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................ATAGCCGAGTCGATCTAGCCAT--GTCCG................................................................................	27	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................AGTCGATCTAGCCAT--GTCCGTC..............................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................AGCCGAGTCGATCTAGCCAT--G....................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................GTCGATCTAGCCAT--GTCCGTCTGT...........................................................................	24	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................CAATAGCCGAGTCGATCTAGCCAT--GG...................................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................CTAGCCAT--GTCCGTCTGTCCG------------------------------------------------------------------------	21	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................TAGCCGAGTCGATCTAGCC.........................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................GCCGAGTCGATCTAGCCAT--G....................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................GTCGATCTAGCCAT--GTCCGT...............................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................GATCTAGCCAT--GTCC.................................................................................	15	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................GCCGAGTCGATCTAGCCAT--GTCCGTCTG............................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................GCCGAGTCGATCTAGCCAT--GTCCG................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................CAATAGCCGAGTCGATCTAGCCA........................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.......................................................................................................................................................................................................................................AGCCGAGTCGATCTAGCCAT--GTCCG................................................................................	25	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................GCCGAGTCGATCTAGCCAT--GTCCGTCT.............................................................................	27	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................GCCGAGTCGATCTAGCCAT--GTCCGTCTGT...........................................................................	29	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................CAATAGCCGAGTCGATCTAG...........................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................CGATCTAGCCAT--GTCCGTC..............................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................CTTGATCAGGAACAG............................................................................................................	15	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................AATAGCCGAGTCGATCTAGCCAT--GT...................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................GCCGAGTCGATCTAGCCA........................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................AGTCGATCTAGCCAT--GTCCGTCTGTC..........................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................TCGATCTAGCCAT--GTCCGTCTGT...........................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................TAGCCGAGTCGATCTAGCCAT--.....................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................GAGTCGATCTAGCCAT--GT...................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................CCGAGTCGATCTAGCCAT--.....................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................CCGAGTCGATCTAGCCAT--GT...................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................CGAGTCGATCTAGCCAT--GTCCGTCTGT...........................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

TC--------------GAGTCGATATGGCCAT-----GAC--------------------------------TGTCTTGATATTTTTATCCGATACTCGTAGA----------GTAAAAAGGTAT--ACTAT----ATTCGT-----TGAAAAGT--ATGTAACAGGCAGAAGGA-AGCGTTTCCGATCGTATAAAGTG--------TATATATTCTTGATCAGGATCAATAACCAAGTCGATCTGTCTAT--ATCCGTCTGTCCG------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...........................................................................................................................................................................AGGA-AGCGTTTCCGATCGTATAAAGT............................................................................................................................................	26	3	0.33	1	1	0	0	0
.........................................................................................................................................TTCGT-----TGAAAAGT--ATGTAACAGG...........................................................................................................................................................................	23	20	0.10	2	0	0	2	0
....................................................................................................................................................................................................GTG--------TATATATTCTTGATCAGGATC..............................................................................................................	24	10	0.10	1	1	0	0	0
...................................................................................................................................................................CAGGCAGAAGGA-AGCGTTTCCGA.......................................................................................................................................................	23	20	0.05	1	0	1	0	0
.........................................................................................................................................TTCGT-----TGAAAAGT--ATGTAACAGGCAGA.......................................................................................................................................................................	27	20	0.05	1	0	0	0	1
.........................................................................................................................................TTCGT-----TGAAAAGT--ATGTAACAG............................................................................................................................................................................	22	20	0.05	1	1	0	0	0
..........................................................................................................................................TCGT-----TGAAAAGT--ATGTAACAGGCAG........................................................................................................................................................................	25	20	0.05	1	1	0	0	0
................................................................................................................................................................TAACAGGCAGAAGGA-AGCGTTTCC.........................................................................................................................................................	24	20	0.05	1	0	0	0	1
..............................................................................................................................................................TGTAACAGGCAGAAGGA-AGCGTTT...........................................................................................................................................................	24	20	0.05	1	0	0	0	1
..........................................................................................................................................TCGT-----TGAAAAGT--ATGTAACAGG...........................................................................................................................................................................	22	20	0.05	1	0	1	0	0

droYak3

GGAACC--GCCATTGG-GT----TATCATCGGGCGCTGTATT---------------CAATTT------------TTTGTTTTTTATATCCGTTACTCGTAGA----------GTAAAAGGGTAT--ACTAG----ATTCGT-----TGAAAACT--ATGTAACAGGCAGAAGGA-AGCGTTTCCGACCATATAAAGTA--------TATATATTCTTGATCAGGATCAATAGCAGAGTCGATCTGGCCGTGTGTCCGTGTGTCCGTC--------CGTCTGTC------------------------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.....................................................................................................................................................................................................................................................GGCCGTGTGTCCGTGTGTCCGTC--------C.............................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................TTGATCAGGATCAATAGCAGAGT...................................................................................................	23	14	0.50	7	0	0	0	0	0	0	0	0	0	0	7
........................................................................................................................................................................................................................TTGATCAGGATCAATAGCAGAGTCGA................................................................................................	26	13	0.31	4	0	0	0	0	0	0	0	0	0	0	4
..............................................................................................................................................................TGTAACAGGCAGAAGGA-AGCGT.............................................................................................................................................................	22	20	0.30	6	0	0	6	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................TTCTTGATCAGGATCAATAGCAGAG....................................................................................................	25	15	0.20	3	0	2	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................GGATCAATAGCAGAGTCGATCTGGC..........................................................................................	25	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................TAG----ATTCGT-----TGAAAACT--ATGTAACAGG...........................................................................................................................................................................	27	11	0.09	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................TTCTTGATCAGGATCAATAGCAGAGT...................................................................................................	26	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................CT--ATGTAACAGGCAGAAGGA-AGCGTT............................................................................................................................................................	26	13	0.08	1	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................AAAACT--ATGTAACAGGCAGAAGGA-AG................................................................................................................................................................	26	15	0.07	1	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................AAACT--ATGTAACAGGCAGAAG.....................................................................................................................................................................	21	18	0.06	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................TTGATCAGGATCAATAGCAG......................................................................................................	20	19	0.05	1	0	0	0	0	0	0	0	0	0	0	1

droEre2

GAA----------------TCTTTGTCGCCGG-----CCT--------------GGTTTATTTTACGGGTATAAATCGTATTTTTATACCTGTTACTCGTAGA--------------------------------------------------GC--TTGCAACATGCAGAAGGA-AGCGTTTCCGTTCATATAAAGAA--------TATATATTCTTGATCAGGATCAATAGCCGAGTCGATCTGTCCAT--GTCCGTCTGTCCGT------------------------ATTAACGTCTCGAT---------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
........................................................................................................................................................................................................................TTGATCAGGATCAATAGCCGAGTC..................................................................................................	24	20	0.10	2	0	0	0	0	0	0	2
.......................................................................................................................................................................................................................CTTGATCAGGATCAATAGCC.......................................................................................................	20	20	0.05	1	0	0	0	0	1	0	0
..........................................................................................................................................................................................................................GATCAGGATCAATAGCCGAGT...................................................................................................	21	20	0.05	1	0	0	0	0	1	0	0
...............................................................................................................................................................................................................TATATATTCTTGATCAGGATCAATAGCC.......................................................................................................	28	20	0.05	1	0	1	0	0	0	0	0
.............................................................................................................................................................................................................................CAGGATCAATAGCCGAGTCGATCTG............................................................................................	25	20	0.05	1	1	0	0	0	0	0	0

dps_2986

XR_group6:1982092-1982242 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-23.7	-23.4	-23.3