ID:

dps_2980

 Coordinate:

XR_group6:1596559-1596709 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-1.2 -1.2

Flybase annnotation

exon [dpse_GLEANR_12858:3]; CDS [Dpse\GA23675-cds]; intron [Dpse\GA23675-in]

No Repeatable elements found

mature
  1. dps_2980  XR_group6:1596598-1596616 +
  2. XR_group6:1600586-1600604 -
star
  1. dps_2980  XR_group6:1596637-1596657 +
  2. XR_group6:1600545-1600565 -

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------#######################################-----------
TCGCCGCAGCACGGCCATGAATCGGAAGAGAAACTCTTTTTGGGGGACGGCAGAGGCAGCAACGGGAAAAGCCATTTGCATACACGAAAAATGTTGGAGAAAAATAGCAAAACATAAACGAAATTATAATTGAACAAGACGGAAAAATGAATTCTCATTTGCTAAAGCGATTAAGGCGATTAAAGCGATTACATTTTACAGATGTACGAGGGACGAGAGACGGAGAGGAGAGACGAGTAGTTTTTGGTAGA
*****************************************************************************************..(((((........)))))........................................****************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902011
testis
 V112
male body		 SRR902010
ovaries
 M022
male body
..............CCATGAGTCGGAAGCCAAAC......................................................................................................................................................................................................................... 20 3 4 2.00 8 8 0 0 0 0
..........................................................................................................................................................................................................TGTACGAGGGACGAGAGACGG............................ 21 0 2 1.50 3 0 3 0 0 0
.........................................................................................................................................................................................................................AGACGGAGAGGAGAGACGAG.............. 20 0 1 1.00 1 0 0 1 0 0
.................................CTCTTATTGGGTGACGGC........................................................................................................................................................................................................ 18 2 2 1.00 2 2 0 0 0 0
...............CATGAGTCGGAAGCCAAAC......................................................................................................................................................................................................................... 19 3 20 0.90 18 14 0 2 0 2
.............................................................................................................................................................TTTGCTAAAGCGATTAGGGC.......................................................................... 20 1 2 0.50 1 1 0 0 0 0
.........................................................................................AATGTTGGAGAAAAATAGC............................................................................................................................................... 19 0 2 0.50 1 0 1 0 0 0
................................................................................................................................ATTGAACAAGACGGAAAAATG...................................................................................................... 21 0 2 0.50 1 0 1 0 0 0
........................................................................................................................AAATTATAATTGAACAAGACGG............................................................................................................. 22 0 2 0.50 1 0 0 0 1 0
...........................................................................................................................TTATAATTGAACAAGACGGAA........................................................................................................... 21 0 2 0.50 1 0 1 0 0 0
.................................................................................................................................................................................................TTTTGCAGATGTACGAGGGA...................................... 20 1 2 0.50 1 0 0 1 0 0
..................................................................................................................................................................................................TTTACAGATGTACGAGGGACG.................................... 21 0 2 0.50 1 0 0 1 0 0
..........................................................................................................................ATTGTAATTGAACAAGACGGA............................................................................................................ 21 1 2 0.50 1 0 1 0 0 0
............................................................................TGCATACACGAAAAATGTTGG.......................................................................................................................................................... 21 0 2 0.50 1 1 0 0 0 0
.......................................TTGGGCGACGGTAGAGGCTGC............................................................................................................................................................................................... 21 3 4 0.25 1 0 1 0 0 0
...............CATGAGTCGGAAGCCAAACT........................................................................................................................................................................................................................ 20 3 5 0.20 1 0 0 1 0 0
................................ACTCTTATGGGGTGACGGC........................................................................................................................................................................................................ 19 3 16 0.19 3 3 0 0 0 0
.................................CTCTTATGGGGGGACGGC........................................................................................................................................................................................................ 18 2 8 0.13 1 1 0 0 0 0
..............CCATGAGTCGGAAGCCAAA.......................................................................................................................................................................................................................... 19 3 20 0.10 2 2 0 0 0 0
...................................................................................ACGAAAAATGGTGGAGGAAAT................................................................................................................................................... 21 3 12 0.08 1 1 0 0 0 0
..............................................................................................................................TAATCGGACAAGACAGAAAAA........................................................................................................ 21 3 13 0.08 1 0 0 0 1 0
....................................................................................................................................................................................................TACAAATGCACCAGGGACG.................................... 19 3 20 0.05 1 1 0 0 0 0
........................................TGGGCGACGGTAGAGGCTGC............................................................................................................................................................................................... 20 3 20 0.05 1 0 1 0 0 0

Anti-sense strand reads

AGCGGCGTCGTGCCGGTACTTAGCCTTCTCTTTGAGAAAAACCCCCTGCCGTCTCCGTCGTTGCCCTTTTCGGTAAACGTATGTGCTTTTTACAACCTCTTTTTATCGTTTTGTATTTGCTTTAATATTAACTTGTTCTGCCTTTTTACTTAAGAGTAAACGATTTCGCTAATTCCGCTAATTTCGCTAATGTAAAATGTCTACATGCTCCCTGCTCTCTGCCTCTCCTCTCTGCTCATCAAAAACCATCT
******************************************************************************************************..(((((........)))))........................................***************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902011
testis
 GSM343916
embryo
..............GGTACTCAGCCTTCGGTTTG......................................................................................................................................................................................................................... 20 3 4 2.50 10 10 0 0
....................................AAAAAGCCGCTGCCGTCTCC................................................................................................................................................................................................... 20 2 1 1.00 1 1 0 0
.............CGGTACTCAGCCTTCGGTTTG......................................................................................................................................................................................................................... 21 3 2 0.50 1 1 0 0
..................................................................................................................ATTTGCTTTAATATTAACTT..................................................................................................................... 20 0 2 0.50 1 0 1 0
.....................................AAAAACCGCTGCCGTCTCC................................................................................................................................................................................................... 19 2 5 0.20 1 1 0 0
...GACGTCGTGCCGGTCCTTAG.................................................................................................................................................................................................................................... 20 2 5 0.20 1 1 0 0
...............................................................................................................................................................................................................CTCCCTTCTCTCTGACACTCC....................... 21 3 8 0.13 1 0 0 1
....................................................................................................................TTGCTATAATATTAACTGTTT.................................................................................................................. 21 3 20 0.05 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 XR_group6:1596509-1596759 + dps_2980 TCGCCGCAGCACGGCCATGAATCGGAAGAGAAACTCTTTTTGGGGGACGGCAGAGGCAGCAACGGGAAAAGCCATTTGCATACACGAAAAATGTTGGAGAAAAATAGCAAAACATAAACGAAATTATAATTGAACAAGACGGAAAAATGAATTCTCATTTGCTAAAGCGATTAAGGCGATTAAAGCGATTACATTTTACAGATGTACGAGGGACGA--------------------GAGACGGAGAGGAGAGACGAGTAGTTTTTGGTAGA
droPer2 scaffold_12:2286977-2287247 + TCGTCGCAGCACGGCCATGAATCGGAAGAGAAACTCTTTTTGGGGGACGGCAGCGGCAGCAACGGGAAAAGCCATTTGCATACACGAAAAATGTTGGAGAAAAATAGCAAAACATAAACGAAATTATAATTGAACAAGACGGAAAAATGAATTCTCATTTGCTAAAGCGATTAAGGCGATTAAAGCGATTACATTTTACAGATGTACGAGGGACGAGAGATGGCGACGAGAGACGAGAGACGGAGACGAGAGACGAGTAGTTTTTGGTAGA
droEug1 scf7180000409215:73776-73804 + ------------------------------------------------------------------------------------------------------------AAAACATAAACCAAATTATTATTTAACAA--------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
TCGCCGCAGCACGGCCATGAATCGGAAGAGAAACTCTTTTTGGGGGACGGCAGAGGCAGCAACGGGAAAAGCCATTTGCATACACGAAAAATGTTGGAGAAAAATAGCAAAACATAAACGAAATTATAATTGAACAAGACGGAAAAATGAATTCTCATTTGCTAAAGCGATTAAGGCGATTAAAGCGATTACATTTTACAGATGTACGAGGGACGA--------------------GAGACGGAGAGGAGAGACGAGTAGTTTTTGGTAGASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................................................................................................................................................................................................TGTACGAGGGACGA--------------------GAGACGG............................2121.5030000000030
.............................................................................................................................................................................................................................................AGACGGAGAGGAGAGACGAG..............2011.0010000001000
.........................................................................................AATGTTGGAGAAAAATAGC...................................................................................................................................................................1920.5010000000010
................................................................................................................................ATTGAACAAGACGGAAAAATG..........................................................................................................................2120.5010000000010
........................................................................................................................AAATTATAATTGAACAAGACGG.................................................................................................................................2220.5010000000100
...........................................................................................................................TTATAATTGAACAAGACGGAA...............................................................................................................................2120.5010000000010
..................................................................................................................................................................................................TTTACAGATGTACGAGGGACG........................................................2120.5010000001000
............................................................................TGCATACACGAAAAATGTTGG..............................................................................................................................................................................2120.5010100000000
droPer2
TCGTCGCAGCACGGCCATGAATCGGAAGAGAAACTCTTTTTGGGGGACGGCAGCGGCAGCAACGGGAAAAGCCATTTGCATACACGAAAAATGTTGGAGAAAAATAGCAAAACATAAACGAAATTATAATTGAACAAGACGGAAAAATGAATTCTCATTTGCTAAAGCGATTAAGGCGATTAAAGCGATTACATTTTACAGATGTACGAGGGACGAGAGATGGCGACGAGAGACGAGAGACGGAGACGAGAGACGAGTAGTTTTTGGTAGASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................................................................................................................................................................................................TTTTACAGATGTACGAGGGAC.........................................................2120.501010000
.....................................................................................................................................................................................................ACAGATGTACGAGGGACGA.......................................................1920.501000001
..................................................................................................................................................................................................TTTACAGATGTACGAGGGAC.........................................................2020.501000001
.....................................................................................................................................................................................................ACAGATGTACGAGGGACGAG......................................................2020.501000001
....................................................................................................................................................................................................................................................GACGAGAGACGAGTAGTTTTT......2120.501000001
..................................................................................................................................................................................................................................................GAGACGAGAGACGAGTAGTT.........2020.501000001
..................................................................................................................................................................................................TTTACAGATGTACGAGGGACG........................................................2120.501000010
droEug1
------------------------------------------------------------------------------------------------------------AAAACATAAACCAAATTATTATTTAACAA--------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads

Generated: 05/18/2015 at 05:56 AM